AlfalfaGEDB | Msa0895000

M. sativa cultivar zhongmu-4 / Msa0895000

KEGG: K04733
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0895000	XP_013452655.1	97.218	683	12	1	1	683	1	676	0.0	1352

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0895000	sp\|Q9LP77\|Y1848_ARATH	57.887	653	244	11	22	672	32	655	0.0	705

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0895000	A0A072UCA8	97.218	683	12	1	1	683	1	676	0.0	1352

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0034210	Msa0895000	0.802128	6.498210e-49	-8.615850e-47
Msa0128310	Msa0895000	0.808225	3.438481e-50	-8.615850e-47
Msa0174440	Msa0895000	0.800823	1.202747e-48	-8.615850e-47
Msa0415600	Msa0895000	0.807662	4.530667e-50	-8.615850e-47
Msa0472950	Msa0895000	0.818277	2.132121e-52	-8.615850e-47
Msa0517250	Msa0895000	0.802498	5.451943e-49	-8.615850e-47
Msa0549370	Msa0895000	0.804283	2.327013e-49	-8.615850e-47
Msa0700460	Msa0895000	0.802751	4.835753e-49	-8.615850e-47
Msa0895000	Msa0921750	0.858168	9.916677e-63	-8.615850e-47
Msa0895000	Msa0994540	0.824464	7.956711e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0895000	MtrunA17_Chr6g0478621	97.218	683	12	1	1	683	1	676	0.0	1352
Msa0895000	MtrunA17_Chr8g0393211	68.189	657	166	11	25	670	35	659	0.0	823
Msa0895000	MtrunA17_Chr5g0434551	54.438	676	254	12	7	679	8	632	0.0	669
Msa0895000	MtrunA17_Chr3g0108301	43.750	672	315	12	1	661	13	632	3.18e-174	512
Msa0895000	MtrunA17_Chr5g0432851	43.994	666	312	12	1	660	22	632	2.90e-170	502
Msa0895000	MtrunA17_Chr3g0128551	43.722	661	308	15	22	671	28	635	1.53e-163	484
Msa0895000	MtrunA17_Chr8g0387791	43.150	635	292	13	40	667	38	610	1.24e-155	464
Msa0895000	MtrunA17_Chr3g0126271	39.318	674	336	10	7	673	6	613	2.35e-148	444
Msa0895000	MtrunA17_Chr1g0209521	44.006	659	317	19	11	656	19	638	2.71e-144	436
Msa0895000	MtrunA17_Chr5g0396941	38.540	685	312	17	3	672	9	599	1.21e-142	429

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0895000	AT1G48480.1	57.887	653	244	11	22	672	32	655	0.0	705
Msa0895000	AT3G17840.1	58.025	648	225	11	22	658	30	641	0.0	685
Msa0895000	AT5G16590.1	50.681	661	276	14	5	663	9	621	0.0	606
Msa0895000	AT3G02880.1	51.603	655	264	13	10	659	13	619	0.0	596
Msa0895000	AT2G26730.1	46.418	670	300	12	10	670	12	631	3.06e-174	513
Msa0895000	AT3G08680.1	43.043	690	327	16	1	678	2	637	5.90e-166	491
Msa0895000	AT3G08680.2	43.043	690	327	16	1	678	2	637	5.90e-166	491
Msa0895000	AT5G05160.1	42.711	686	324	21	6	679	12	640	2.44e-149	448
Msa0895000	AT1G68400.1	43.662	639	320	18	25	656	32	637	3.53e-144	436
Msa0895000	AT5G24100.1	39.222	668	330	14	3	657	9	613	8.27e-137	415

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Find 244 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCGCCGGAAGTTCAC+CGG	0.507469	6_1:+81693186	None:intergenic
AAAATATCTAAATAGCTCCC+TGG	0.570956	6_1:-81690719	Msa0895000:three_prime_UTR
AAACCCCACCGGAATTTCAC+CGG	0.536957	6_1:+81693114	None:intergenic
AAATGGTAATGGATATTCGT+CGG	0.657180	6_1:-81692564	Msa0895000:CDS
AAATTATTTAAAAGTTTAGA+AGG	0.319598	6_1:+81690644	None:intergenic
AACATAAGCACACATGATTC+AGG	0.429159	6_1:+81690856	None:intergenic
AACCCTTGTCCTAAGGAAGG+GGG	0.668984	6_1:-81692893	Msa0895000:CDS
AACGGAGGCTGAGAGTGTGG+AGG	0.705941	6_1:+81693293	None:intergenic
AAGAAAGGGAAATTATCTGG+TGG	0.682756	6_1:-81692758	Msa0895000:CDS
AAGAAGAAAGGGAAATTATC+TGG	0.385486	6_1:-81692761	Msa0895000:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTGTATCTTCAAAACAAC+CGG	-	chr6_1:81690953-81690972	Msa0895000:exon	30.0%
GTTTCAAACAACATGCTAAA+CGG	-	chr6_1:81691033-81691052	Msa0895000:CDS	30.0%
AAGAAGAAAGGGAAATTATC+TGG	-	chr6_1:81691261-81691280	Msa0895000:CDS	30.0%
CATAATCAGCTTATTGATGA+AGG	-	chr6_1:81691408-81691427	Msa0895000:CDS	30.0%
ATGAAAATTTAGCACCTCTT+AGG	-	chr6_1:81691772-81691791	Msa0895000:intron	30.0%
TGAAAATTTAGCACCTCTTA+GGG	-	chr6_1:81691773-81691792	Msa0895000:intron	30.0%
CTATAATAATAAGCCCTAAG+AGG	+	chr6_1:81691789-81691808	None:intergenic	30.0%
TCTTGCATTACATTTCCATT+TGG	-	chr6_1:81692158-81692177	Msa0895000:intron	30.0%
CTTGCATTACATTTCCATTT+GGG	-	chr6_1:81692159-81692178	Msa0895000:intron	30.0%
AACAAAGTAACAAACCCAAA+TGG	+	chr6_1:81692176-81692195	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	81690243	81693801	81690243	ID=Msa0895000;Name=Msa0895000
chr6_1	mRNA	81690243	81693801	81690243	ID=Msa0895000-mRNA-1;Parent=Msa0895000;Name=Msa0895000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=217\|1\|1\|1\|1\|1\|2\|711\|683
chr6_1	exon	81690243	81691591	81690243	ID=Msa0895000-mRNA-1:exon:13843;Parent=Msa0895000-mRNA-1
chr6_1	exon	81692171	81693801	81692171	ID=Msa0895000-mRNA-1:exon:13842;Parent=Msa0895000-mRNA-1
chr6_1	five_prime_UTR	81693585	81693801	81693585	ID=Msa0895000-mRNA-1:five_prime_utr;Parent=Msa0895000-mRNA-1
chr6_1	CDS	81692171	81693584	81692171	ID=Msa0895000-mRNA-1:cds;Parent=Msa0895000-mRNA-1
chr6_1	CDS	81690954	81691591	81690954	ID=Msa0895000-mRNA-1:cds;Parent=Msa0895000-mRNA-1
chr6_1	three_prime_UTR	81690243	81690953	81690243	ID=Msa0895000-mRNA-1:three_prime_utr;Parent=Msa0895000-mRNA-1

Gene Sequence

>Msa0895000

ATGGAGTTTTATTTCTCATTCTTTTACTTTTTTCTGACACTTTTTCTTCCGTCGGTAAAACCCGACCTTACTTCCGAACGCGCCGCTTTATTAACCCTACGCGCCGCCGTAACCGGCCGAACCCTACTCTGGAACACTACCTCCGCCTCTCCCTGCAACTGGGCTGGCGTCCATTGTAACCAAAACCACACTCACGTTGTCGAGCTTCATCTTCCCGCCGTCGCACTCTCCGGCAACCTCCCCACCGGAGTATTCTCCGAACTCCCTAACCTCCACACTCTCAGCCTCCGTTTCAACTCTCTCTCCGGTCCACTCCCCTTCGACCTTGCTTCTTGCACCTCCCTCAAAAACCTCTACCTTCAGCAGAATCTTCTCTCCGGTGAACTTCCGGCGACTTTTTTCAACCTCACCGGACTAGTTCGTCTGAACTTAGCTTCCAACAATTTCTCCGGTGAAATTCCGGTGGGGTTTGGTAACCTAACCCGGTTGAAAACTTTGTATCTTCAAAACAACCGGTTCACCGGTTCGTTAAGCGAGTTTCAGTTAAACCCGGTTCAACTCGCTCAGTTCAATGTTTCAAACAACATGCTAAACGGTTCTGTTCCTGAAAAGTTGCAAACTTTTGGTAAAGATTCTTTTTTGGGTAATTTGTTATGTGGGAAACCACTTAACCCTTGTCCTAAGGAAGGGGGTGCAAATAGTGGAAAAGGGGGTGCAAATAGTGGTAATGGGGGTAGAAATAGTGGAAATGGGGGTAGAAATTCAAGTGTGGTTGATGATAATAATGGGTTTGTGAGGAACAAGAAGAAAGGGAAATTATCTGGTGGTGCTATAGCTGGAATTGTTATTGGGTCAGTTGTGATTCTTTTGCTTGTGGTTTTTGCTTTGATTGTTTTATGTAGGAATAGAAATGGTGAAAAAATTGATGAAGTTGCAAGAACTTTGAAGCATAATCAGCTTATTGATGAAGGGATTCATGGTGAGAATGTTGGTCATGGAAATGGTAATGGATATTCGTCGGCCGCGGCTATGGCGGTTGCGGCGCCGGTGAATGGTGAGAGAGGTAATGAAGGTGTTGTGATTGGTGGTGGTGATAAAAAATTGGTATTTTTTAAGAATTGGGGTAGGGTGTTTGATTTAGAGGATTTGTTAAGGGCTTCTGCTGAGGTATTAGGGAAAGGGACATTTGGGACATCTTATAAGGCAGTTTTGGAGGCTGGTCCAGTGGCTGTGGCTGTGAAGAGGTTAAGGGATGTGACAATTTCTGAGAGGGAGTTTAAGGAGAAGATTGAGAAGGTTGGAACAATGGTTCATGAAAATTTAGCACCTCTTAGGGCTTATTATTATAGTAGAGATGAGAAGCTTCTTGTTCATGATTATTTGCATATGGGAAGTTTATCTGCACTTTTGCATGGAAACAAAGGAGGGGGTAGGACACCATTGACTTGGGAAATGAGATCAGGCATTGCACTTGGCGCTGCTCGCGGCATTGAATACCTACATTCACAAGGTCCTAATGTTTCTCATGGAAACATAAAGTCATCTAACATCCTACTAACCAAGTCCTACGATGCAAGAGTATCTGATTTCGGTCTTGCCCATCTTGTTGGTCCTTCATCCACACCCAATAGGGTTGCTGGCTACCGTGCTCCCGAGGTAACCGATCCTCGGAAAGTTTCTCAAAAGGCAGATGTATACAGCTTTGGTGTATTGCTCTTGGAACTTCTGACCGGAAAGGCTCCAACTCACTCCCTCCTGAACGACGAAGGTGTGGACCTTCCGAGATGGGTGCAATCGGTTGTTAAAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAACTCCTTAGGTATCAAAATGTTGAAGAGGAAATGGTGCAGTTGTTGCAACTTGCCGTAGATTGTGCTGCTCCATATCCCGATAACCGCCCTTCCATGTCGCAAGTGAGACAGCACATAGAAGAGTTGCATAGGTCTAGCTCGAAAGAGGGTAGTCAAGACCAAATTCAACAACCTGATGTGATCAGTGACATAGATGATATCTCTTCTAGATGA

Protein sequence

>Msa0895000

MEFYFSFFYFFLTLFLPSVKPDLTSERAALLTLRAAVTGRTLLWNTTSASPCNWAGVHCNQNHTHVVELHLPAVALSGNLPTGVFSELPNLHTLSLRFNSLSGPLPFDLASCTSLKNLYLQQNLLSGELPATFFNLTGLVRLNLASNNFSGEIPVGFGNLTRLKTLYLQNNRFTGSLSEFQLNPVQLAQFNVSNNMLNGSVPEKLQTFGKDSFLGNLLCGKPLNPCPKEGGANSGKGGANSGNGGRNSGNGGRNSSVVDDNNGFVRNKKKGKLSGGAIAGIVIGSVVILLLVVFALIVLCRNRNGEKIDEVARTLKHNQLIDEGIHGENVGHGNGNGYSSAAAMAVAAPVNGERGNEGVVIGGGDKKLVFFKNWGRVFDLEDLLRASAEVLGKGTFGTSYKAVLEAGPVAVAVKRLRDVTISEREFKEKIEKVGTMVHENLAPLRAYYYSRDEKLLVHDYLHMGSLSALLHGNKGGGRTPLTWEMRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHSLLNDEGVDLPRWVQSVVKEEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAPYPDNRPSMSQVRQHIEELHRSSSKEGSQDQIQQPDVISDIDDISSR*