AlfalfaGEDB | Msa1117920

M. sativa cultivar zhongmu-4 / Msa1117920

KEGG: -
GO: -
PFAM: PF14383.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117920	XP_003624821.1	95.252	337	16	0	1	337	1	337	0.0	607

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117920	G7L3Q5	95.252	337	16	0	1	337	1	337	0.0	607

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005890	Msa1117920	0.802956	4.385837e-49	-8.615850e-47
Msa0018160	Msa1117920	0.813604	2.352829e-51	-8.615850e-47
Msa0021500	Msa1117920	0.814612	1.409971e-51	-8.615850e-47
Msa0025580	Msa1117920	0.810526	1.103101e-50	-8.615850e-47
Msa0034210	Msa1117920	0.809176	2.153383e-50	-8.615850e-47
Msa0036870	Msa1117920	0.810478	1.129871e-50	-8.615850e-47
Msa0052260	Msa1117920	0.804633	1.966986e-49	-8.615850e-47
Msa0054690	Msa1117920	0.844560	7.007879e-59	-8.615850e-47
Msa0090400	Msa1117920	0.814164	1.770832e-51	-8.615850e-47
Msa0125550	Msa1117920	0.806420	8.298915e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117920	MtrunA17_Chr7g0254901	95.252	337	16	0	1	337	1	337	0.0	607

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117920	AT3G56810.1	28.340	247	133	5	133	337	88	332	1.61e-15	76.6

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Find 92 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCACGTCAAGACAAT+TGG	0.426627	7_3:+66376126	Msa1117920:CDS
AAACACCAGCGTTAGTAGCG+AGG	0.630494	7_3:+66376511	Msa1117920:CDS
AAATTCGAAATTATCACGCG+AGG	0.662168	7_3:+66376416	Msa1117920:CDS
AACCGAAGGTAAGGAAACGG+CGG	0.755169	7_3:-66376200	None:intergenic
AACGAAACGAACCGAAGGTA+AGG	0.480610	7_3:-66376209	None:intergenic
AAGAATAGGATTAGCTTTGC+AGG	0.354347	7_3:+66380403	Msa1117920:CDS
AAGACAATTGGCTGTATGTC+CGG	0.444181	7_3:+66376138	Msa1117920:CDS
AAGGAAACGGCGGTGGCGAC+GGG	0.421061	7_3:-66376190	None:intergenic
AAGTCGTCAAGAACAGACAC+AGG	0.683064	7_3:-66376762	None:intergenic
AAGTGTAGATGAAGTGTGTA+GGG	0.475361	7_3:+66380349	Msa1117920:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTCACGTCAAGACAAT+TGG	+	chr7_3:66376126-66376145	Msa1117920:CDS	30.0%
CCTGAAAATGAGAACAAAAA+AGG	-	chr7_3:66376291-66376310	None:intergenic	30.0%
AGAAAATCATAGATTCAGTG+AGG	+	chr7_3:66376640-66376659	Msa1117920:CDS	30.0%
ATCATAGTTGAATTAGGTTC+TGG	-	chr7_3:66378061-66378080	None:intergenic	30.0%
TAGTAATAATAGTTGGGAAG+AGG	-	chr7_3:66378090-66378109	None:intergenic	30.0%
TAGACGGTTAATTCAATTCA+AGG	-	chr7_3:66378266-66378285	None:intergenic	30.0%
TGTATAAATAAAGGGGAAAG+TGG	-	chr7_3:66378515-66378534	None:intergenic	30.0%
AATTCCGGTTCTATAGTATA+GGG	-	chr7_3:66378609-66378628	None:intergenic	30.0%
TAATTCCGGTTCTATAGTAT+AGG	-	chr7_3:66378610-66378629	None:intergenic	30.0%
AATAAATCATGGTACTTTGG+TGG	+	chr7_3:66378863-66378882	Msa1117920:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	66376010	66380699	66376010	ID=Msa1117920;Name=Msa1117920
chr7_3	mRNA	66376010	66380699	66376010	ID=Msa1117920-mRNA-1;Parent=Msa1117920;Name=Msa1117920-mRNA-1;_AED=0.03;_eAED=0.03;_QI=56\|1\|1\|1\|1\|1\|3\|176\|337
chr7_3	exon	66376010	66376219	66376010	ID=Msa1117920-mRNA-1:exon:16025;Parent=Msa1117920-mRNA-1
chr7_3	exon	66376310	66376834	66376310	ID=Msa1117920-mRNA-1:exon:16026;Parent=Msa1117920-mRNA-1
chr7_3	exon	66380189	66380699	66380189	ID=Msa1117920-mRNA-1:exon:16027;Parent=Msa1117920-mRNA-1
chr7_3	five_prime_UTR	66376010	66376065	66376010	ID=Msa1117920-mRNA-1:five_prime_utr;Parent=Msa1117920-mRNA-1
chr7_3	CDS	66376066	66376219	66376066	ID=Msa1117920-mRNA-1:cds;Parent=Msa1117920-mRNA-1
chr7_3	CDS	66376310	66376834	66376310	ID=Msa1117920-mRNA-1:cds;Parent=Msa1117920-mRNA-1
chr7_3	CDS	66380189	66380523	66380189	ID=Msa1117920-mRNA-1:cds;Parent=Msa1117920-mRNA-1
chr7_3	three_prime_UTR	66380524	66380699	66380524	ID=Msa1117920-mRNA-1:three_prime_utr;Parent=Msa1117920-mRNA-1

Gene Sequence

>Msa1117920

ATGAAGAGACAAAGCAGCGCGGTGTCGCCGTCGTCTTCACGGCGAGAAACGACGCCGGACAAAATTCACGTCAAGACAATTGGCTGTATGTCCGGCATTCTCCACCTCATTTCCACTTCTCATTCCCGTCGCCACCGCCGTTTCCTTACCTTCGGTAAGAAACAGTCTAAGAATCAAGTTTCCACCGTCACCGCCACCGCTAATTTGCCACCAGAAAAAACGAATGAGAAGAAGAGTAGTGATGAAGTTTCAACCGTACGAAATTCGAAATTATCACGCGAGGTTCCGAGGAGTCCGACTTTACCGGCGGAGATTCGCCGTTCGAGTCCAAGGAAGTCATCGGAGAATATTCGTGAAACACCAGCGTTAGTAGCGAGGCTGATGGGACTGGAATCGCTTCCGTCTTCACCGGAGTCAGTTGTGGAGAAGAGACAGAAGCTGCTTGGAGCGTTGCAGAGATGCGACGAGGATCTCAAGGTGCTGAAGAAAATCATAGATTCAGTGAGGACTCCTGAACTCGTTCCGTCGACGTCGCCGGCGGTGGTTAAGCATACGGTTTGTGAGGTGAAGTGTTCGGTGGTTAACGGTGACCAACAACAGCCGAGTCCTGTGTCTGTTCTTGACGACTTCACTCGTTCGCCACTCAGTCCAAATTGTCACTCCGGTCGCCATTCACATTCACGAATGCAACAACAGAAGCAGCAGTTACTGAAGAAGCCAGGAGAGGAAGAAATCAACAGCACATTATATATGCACGAGAGAATGACAAACGAGTTGGTTAGTAAGAAAGTCAACGATGAAGATCGTTCAGTTATGTGGAGTAGCAAGGGCATGAAGAGAAGTGTAGATGAAGTGTGTAGGGATGTTGCTTGGGGAGAAAATAGAGAGCTTGGAAGAATAGGATTAGCTTTGCAGGATTGTATATGCAGGGATTTAATTGAAGAGATTGTTAGAGAATTAGGATGCTTGAATACTTTGCCATTTGAGTCCTGTAAGAGAAGACTCTGCTTCTGA

Protein sequence

>Msa1117920

MKRQSSAVSPSSSRRETTPDKIHVKTIGCMSGILHLISTSHSRRHRRFLTFGKKQSKNQVSTVTATANLPPEKTNEKKSSDEVSTVRNSKLSREVPRSPTLPAEIRRSSPRKSSENIRETPALVARLMGLESLPSSPESVVEKRQKLLGALQRCDEDLKVLKKIIDSVRTPELVPSTSPAVVKHTVCEVKCSVVNGDQQQPSPVSVLDDFTRSPLSPNCHSGRHSHSRMQQQKQQLLKKPGEEEINSTLYMHERMTNELVSKKVNDEDRSVMWSSKGMKRSVDEVCRDVAWGENRELGRIGLALQDCICRDLIEEIVRELGCLNTLPFESCKRRLCF*