Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415600 | XP_003600642.2 | 88.926 | 298 | 9 | 1 | 54 | 327 | 104 | 401 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415600 | G7J7Z9 | 88.926 | 298 | 9 | 1 | 54 | 327 | 104 | 401 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025580 | Msa0415600 | 0.809105 | 2.230291e-50 | -8.615850e-47 |
| Msa0032460 | Msa0415600 | 0.814969 | 1.174854e-51 | -8.615850e-47 |
| Msa0034210 | Msa0415600 | 0.803585 | 3.250011e-49 | -8.615850e-47 |
| Msa0035340 | Msa0415600 | 0.823868 | 1.098805e-53 | -8.615850e-47 |
| Msa0035380 | Msa0415600 | 0.803464 | 3.443780e-49 | -8.615850e-47 |
| Msa0050660 | Msa0415600 | 0.804682 | 1.921136e-49 | -8.615850e-47 |
| Msa0054690 | Msa0415600 | 0.816063 | 6.707012e-52 | -8.615850e-47 |
| Msa0128310 | Msa0415600 | 0.804853 | 1.769456e-49 | -8.615850e-47 |
| Msa0149350 | Msa0415600 | 0.808026 | 3.790112e-50 | -8.615850e-47 |
| Msa0154620 | Msa0415600 | 0.805334 | 1.403347e-49 | -8.615850e-47 |
| Msa0173290 | Msa0415600 | 0.806814 | 6.850614e-50 | -8.615850e-47 |
| Msa0174440 | Msa0415600 | 0.801155 | 1.029017e-48 | -8.615850e-47 |
| Msa0176060 | Msa0415600 | 0.803805 | 2.926085e-49 | -8.615850e-47 |
| Msa0185960 | Msa0415600 | 0.807520 | 4.856996e-50 | -8.615850e-47 |
| Msa0380670 | Msa0415600 | 0.810739 | 9.922111e-51 | -8.615850e-47 |
| Msa0415600 | Msa0422050 | 0.807382 | 5.193640e-50 | -8.615850e-47 |
| Msa0415600 | Msa0430300 | 0.821270 | 4.414395e-53 | -8.615850e-47 |
| Msa0415600 | Msa0483910 | 0.801100 | 1.055653e-48 | -8.615850e-47 |
| Msa0415600 | Msa0517250 | 0.833983 | 3.896544e-56 | -8.615850e-47 |
| Msa0415600 | Msa0520260 | 0.812270 | 4.612589e-51 | -8.615850e-47 |
| Msa0415600 | Msa0530780 | 0.829860 | 4.063685e-55 | -8.615850e-47 |
| Msa0415600 | Msa0549370 | 0.821989 | 3.010145e-53 | -8.615850e-47 |
| Msa0415600 | Msa0563940 | 0.813035 | 3.137280e-51 | -8.615850e-47 |
| Msa0415600 | Msa0585340 | 0.808929 | 2.432501e-50 | -8.615850e-47 |
| Msa0415600 | Msa0587620 | 0.813801 | 2.129419e-51 | -8.615850e-47 |
| Msa0415600 | Msa0661150 | 0.817280 | 3.579223e-52 | -8.615850e-47 |
| Msa0415600 | Msa0665620 | 0.801576 | 8.436031e-49 | -8.615850e-47 |
| Msa0415600 | Msa0700460 | 0.848893 | 4.585058e-60 | -8.615850e-47 |
| Msa0415600 | Msa0756490 | 0.829171 | 5.976299e-55 | -8.615850e-47 |
| Msa0415600 | Msa0845440 | 0.806877 | 6.644536e-50 | -8.615850e-47 |
| Msa0415600 | Msa0895000 | 0.807662 | 4.530667e-50 | -8.615850e-47 |
| Msa0415600 | Msa0981320 | 0.813551 | 2.416861e-51 | -8.615850e-47 |
| Msa0415600 | Msa1020670 | 0.803991 | 2.676751e-49 | -8.615850e-47 |
| Msa0415600 | Msa1025560 | 0.804596 | 2.001988e-49 | -8.615850e-47 |
| Msa0415600 | Msa1034600 | 0.807230 | 5.595683e-50 | -8.615850e-47 |
| Msa0415600 | Msa1042160 | 0.832499 | 9.129388e-56 | -8.615850e-47 |
| Msa0415600 | Msa1042190 | 0.831320 | 1.784191e-55 | -8.615850e-47 |
| Msa0415600 | Msa1044680 | 0.819935 | 8.941556e-53 | -8.615850e-47 |
| Msa0415600 | Msa1045140 | 0.811249 | 7.692730e-51 | -8.615850e-47 |
| Msa0415600 | Msa1064370 | 0.812311 | 4.520223e-51 | -8.615850e-47 |
| Msa0415600 | Msa1074370 | 0.818816 | 1.609099e-52 | -8.615850e-47 |
| Msa0415600 | Msa1078970 | 0.801877 | 7.316724e-49 | -8.615850e-47 |
| Msa0415600 | Msa1080000 | 0.812845 | 3.453615e-51 | -8.615850e-47 |
| Msa0415600 | Msa1081390 | 0.801183 | 1.015286e-48 | -8.615850e-47 |
| Msa0415600 | Msa1105640 | 0.824418 | 8.159253e-54 | -8.615850e-47 |
| Msa0415600 | Msa1116220 | 0.821925 | 3.114693e-53 | -8.615850e-47 |
| Msa0415600 | Msa1148960 | 0.800143 | 1.654837e-48 | -8.615850e-47 |
| Msa0415600 | Msa1167470 | 0.833645 | 4.734531e-56 | -8.615850e-47 |
| Msa0415600 | Msa1216090 | 0.808112 | 3.635198e-50 | -8.615850e-47 |
| Msa0415600 | Msa1216110 | 0.818151 | 2.277055e-52 | -8.615850e-47 |
| Msa0415600 | Msa1240770 | 0.834186 | 3.466882e-56 | -8.615850e-47 |
| Msa0415600 | Msa1282260 | 0.860359 | 2.183004e-63 | -8.615850e-47 |
| Msa0415600 | Msa1321340 | 0.830116 | 3.520101e-55 | -8.615850e-47 |
| Msa0415600 | Msa1359690 | 0.809132 | 2.201140e-50 | -8.615850e-47 |
| Msa0415600 | Msa1393780 | 0.800512 | 1.391810e-48 | -8.615850e-47 |
| Msa0415600 | Msa1413690 | 0.812829 | 3.480925e-51 | -8.615850e-47 |
| Msa0415600 | Msa1452140 | 0.806009 | 1.012702e-49 | -8.615850e-47 |
| Msa0292330 | Msa0415600 | 0.801429 | 9.041310e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415600 | MtrunA17_Chr3g0109831 | 88.926 | 298 | 9 | 1 | 54 | 327 | 104 | 401 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415600 | AT1G65900.2 | 51.117 | 358 | 141 | 8 | 1 | 327 | 9 | 363 | 1.69e-113 | 333 |
| Msa0415600 | AT1G65900.1 | 57.143 | 287 | 91 | 6 | 71 | 327 | 124 | 408 | 7.04e-111 | 328 |
Find 74 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTCAACATTTAGATTT+TGG | 0.139325 | 3_2:-61911115 | None:intergenic |
| TAACTAACTCATTCAGCTTA+TGG | 0.245856 | 3_2:+61907367 | Msa0415600:five_prime_UTR |
| TATCTTTCAAGTTCTAAATT+AGG | 0.251881 | 3_2:+61911773 | Msa0415600:three_prime_UTR |
| GTTTCATACCTTCAAATAAT+AGG | 0.262313 | 3_2:-61910632 | None:intergenic |
| CGAGTTTCTTTAGGTTTATT+CGG | 0.267679 | 3_2:+61911873 | Msa0415600:three_prime_UTR |
| TGAGCAGCATTTAGGCTTAC+TGG | 0.271446 | 3_2:+61908973 | Msa0415600:CDS |
| TTAGTTTCAATCCATTTATC+AGG | 0.305852 | 3_2:+61907192 | Msa0415600:five_prime_UTR |
| TTCAGAGGATACTCCTTTGC+AGG | 0.306271 | 3_2:+61909177 | Msa0415600:CDS |
| ATTTCAGGACCAATATTTAT+AGG | 0.308150 | 3_2:-61911693 | None:intergenic |
| AATGAAAGCATACCTTAAAA+AGG | 0.326865 | 3_2:-61911586 | None:intergenic |
| TACGATCAACGAGTTTCTTT+AGG | 0.331527 | 3_2:+61911864 | Msa0415600:three_prime_UTR |
| TGTTATCTTTGTAGGGTGTT+TGG | 0.331912 | 3_2:+61910593 | Msa0415600:intron |
| TTTAATTGTGGAAGTGTTGA+TGG | 0.344046 | 3_2:+61907446 | Msa0415600:five_prime_UTR |
| GTGTCCCTGTCACACATTTC+AGG | 0.348906 | 3_2:-61911708 | None:intergenic |
| AAAGGAGTATCCTCTGAAAA+AGG | 0.352650 | 3_2:-61909172 | None:intergenic |
| GTCATTAAGAATGCTGTTGA+TGG | 0.373808 | 3_2:+61907557 | Msa0415600:CDS |
| GAAAAGCCTTCATGATAGTT+AGG | 0.379949 | 3_2:+61911908 | Msa0415600:three_prime_UTR |
| GCAATTATCTGCATTCTTTG+TGG | 0.393926 | 3_2:-61907233 | None:intergenic |
| CATTCAAGCCAACTGTTGCT+TGG | 0.399346 | 3_2:+61910469 | Msa0415600:CDS |
| TGGATTCAGCTCATTGCTCT+TGG | 0.406134 | 3_2:+61907387 | Msa0415600:five_prime_UTR |
| AGCATTCTTAATGACTTTGA+AGG | 0.407640 | 3_2:-61907549 | None:intergenic |
| TAGGCTTGTGTTTGTAAGAA+AGG | 0.415138 | 3_2:-61911150 | None:intergenic |
| TGATAAATGGATTGAAACTA+AGG | 0.418366 | 3_2:-61907190 | None:intergenic |
| GCTCATTGCTCTTGGTTCCA+AGG | 0.421541 | 3_2:+61907395 | Msa0415600:five_prime_UTR |
| GGAGAAACACCTATAAATAT+TGG | 0.424265 | 3_2:+61911684 | Msa0415600:CDS |
| CGGATTCAAAGTTCGTCTCT+TGG | 0.430422 | 3_2:+61911188 | Msa0415600:CDS |
| CTGCTAATACCAACTGAGGT+TGG | 0.432760 | 3_2:-61911508 | None:intergenic |
| AAATCATCCACATGGCACTA+TGG | 0.442117 | 3_2:-61911751 | None:intergenic |
| TGCTAATACCAACTGAGGTT+GGG | 0.447985 | 3_2:-61911507 | None:intergenic |
| TAAGGAGAATTATTTGTGCT+TGG | 0.450575 | 3_2:+61910422 | Msa0415600:CDS |
| AAAGGAAGCCTATTATTTGA+AGG | 0.452450 | 3_2:+61910624 | Msa0415600:CDS |
| TGCAATTCCTCCAAGTCATC+AGG | 0.461813 | 3_2:-61910831 | None:intergenic |
| GAAACTAAGGTGAAATCATA+AGG | 0.469841 | 3_2:-61907177 | None:intergenic |
| CTCTGATCCTGATGACTTGG+AGG | 0.481275 | 3_2:+61910824 | Msa0415600:CDS |
| GTTAAGTTTCTTACCTGCAA+AGG | 0.492265 | 3_2:-61909190 | None:intergenic |
| TTCTTACAAACACAAGCCTA+TGG | 0.497805 | 3_2:+61911153 | Msa0415600:CDS |
| GGAGTGTATGAATGAATTGT+TGG | 0.502471 | 3_2:-61907156 | None:intergenic |
| CCTGGAGAAGAAGGTAGCTC+TGG | 0.503118 | 3_2:-61907580 | None:intergenic |
| ATACAGTATGTGGAAGATGC+AGG | 0.506685 | 3_2:+61910762 | Msa0415600:intron |
| GGCTTACTGGAGAGCTTGAA+AGG | 0.507335 | 3_2:+61908986 | Msa0415600:CDS |
| GAGTACTAGTACAGTGAAAG+TGG | 0.511700 | 3_2:+61907472 | Msa0415600:five_prime_UTR |
| TGTAAAGTACCTGGAGAAGA+AGG | 0.518618 | 3_2:-61907589 | None:intergenic |
| GCCTATGGAGATATGACAAA+CGG | 0.519757 | 3_2:+61911168 | Msa0415600:CDS |
| TGTCTCTGATCCTGATGACT+TGG | 0.528012 | 3_2:+61910821 | Msa0415600:CDS |
| CCAGAGCTACCTTCTTCTCC+AGG | 0.538312 | 3_2:+61907580 | Msa0415600:CDS |
| TACAGTATGTGGAAGATGCA+GGG | 0.549358 | 3_2:+61910763 | Msa0415600:intron |
| TTGGTCCTGAAATGTGTGAC+AGG | 0.550850 | 3_2:+61911703 | Msa0415600:CDS |
| TCCGTTTGTCATATCTCCAT+AGG | 0.556280 | 3_2:-61911169 | None:intergenic |
| CATCCACATGGCACTATGGT+AGG | 0.556357 | 3_2:-61911747 | None:intergenic |
| TTAGTTTGGTTCTTTAATTG+TGG | 0.558641 | 3_2:+61907434 | Msa0415600:five_prime_UTR |
| TATTTCATCCAAGCAACAGT+TGG | 0.564039 | 3_2:-61910477 | None:intergenic |
| TTATACAATTTCAACACACA+TGG | 0.571170 | 3_2:-61909034 | None:intergenic |
| GTCATGGTGTAATTTCCAGT+TGG | 0.573300 | 3_2:-61911551 | None:intergenic |
| TGTGTGTTGAAATTGTATAA+AGG | 0.573373 | 3_2:+61909037 | Msa0415600:CDS |
| AGAACTCCTAACTATCATGA+AGG | 0.582156 | 3_2:-61911914 | None:intergenic |
| AGCAGTTTCCCAACCTCAGT+TGG | 0.586144 | 3_2:+61911499 | Msa0415600:CDS |
| GTTGACATAGTGTAGTTGAC+TGG | 0.587690 | 3_2:-61911086 | None:intergenic |
| GAAGTTGCAAAATTGCAAGC+TGG | 0.587843 | 3_2:-61909145 | None:intergenic |
| AAGGTTCCTAAAATAAGTCA+TGG | 0.589506 | 3_2:-61911567 | None:intergenic |
| CAGGGACACATCCTCAACAT+TGG | 0.590217 | 3_2:+61911722 | Msa0415600:CDS |
| TGGAGAAGTCACTGTGTCTG+AGG | 0.592569 | 3_2:-61909014 | None:intergenic |
| ATAACTCAAGGATTGCATCA+AGG | 0.602869 | 3_2:+61908325 | Msa0415600:CDS |
| CTCATTGGTAGAATAACTCA+AGG | 0.613473 | 3_2:+61908313 | Msa0415600:intron |
| ACAGTATGTGGAAGATGCAG+GGG | 0.627644 | 3_2:+61910764 | Msa0415600:intron |
| AGTACTAGTACAGTGAAAGT+GGG | 0.628088 | 3_2:+61907473 | Msa0415600:five_prime_UTR |
| GCATGTGAAGATTGGTACAA+TGG | 0.631928 | 3_2:+61911476 | Msa0415600:intron |
| AGATCTGCTAATACCAACTG+AGG | 0.642586 | 3_2:-61911512 | None:intergenic |
| TATGGTAGGATCCAATGTTG+AGG | 0.658692 | 3_2:-61911733 | None:intergenic |
| TCAGCAGAGAAGTTTGACAA+TGG | 0.686948 | 3_2:-61908387 | None:intergenic |
| GTGTTGAAATTGTATAAAGG+AGG | 0.695864 | 3_2:+61909040 | Msa0415600:CDS |
| CAGTATGTGGAAGATGCAGG+GGG | 0.700781 | 3_2:+61910765 | Msa0415600:intron |
| TGAAAGATAAATCATCCACA+TGG | 0.726809 | 3_2:-61911759 | None:intergenic |
| TGGTCCTGAAATGTGTGACA+GGG | 0.748927 | 3_2:+61911704 | Msa0415600:CDS |
| GATCCTACCATAGTGCCATG+TGG | 0.753347 | 3_2:+61911744 | Msa0415600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAATTATTAATATTTTT+TGG | - | chr3_2:61910520-61910539 | None:intergenic | 0.0% |
| !! | AATTAATAAATATTAATTTA+TGG | + | chr3_2:61910532-61910551 | Msa0415600:intron | 0.0% |
| !!! | ATATATATATATATATATTT+TGG | + | chr3_2:61911370-61911389 | Msa0415600:intron | 0.0% |
| !!! | TTATTTTTTTATATAGAAAG+TGG | + | chr3_2:61907344-61907363 | Msa0415600:five_prime_UTR | 10.0% |
| !!! | AACAAAGAATTTTTTTTTAT+GGG | - | chr3_2:61909485-61909504 | None:intergenic | 10.0% |
| !!! | AAACAAAGAATTTTTTTTTA+TGG | - | chr3_2:61909486-61909505 | None:intergenic | 10.0% |
| !!! | TATTACATTTTTTAACAAAT+TGG | + | chr3_2:61910980-61910999 | Msa0415600:intron | 10.0% |
| !!! | TTTTTTGAAATTTTTGAAAT+AGG | + | chr3_2:61911818-61911837 | Msa0415600:three_prime_UTR | 10.0% |
| !!! | TGATTTTCTTAAATAATTAG+TGG | + | chr3_2:61907700-61907719 | Msa0415600:intron | 15.0% |
| !!! | GATTTTCTTAAATAATTAGT+GGG | + | chr3_2:61907701-61907720 | Msa0415600:intron | 15.0% |
| !!! | ATTTTCTTAAATAATTAGTG+GGG | + | chr3_2:61907702-61907721 | Msa0415600:intron | 15.0% |
| !!! | TCATTGATTAAATATAAGTT+AGG | - | chr3_2:61908287-61908306 | None:intergenic | 15.0% |
| !! | ATAAAGTTTCAAAATTCAAA+AGG | + | chr3_2:61909230-61909249 | Msa0415600:intron | 15.0% |
| !!! | AGTTCATTCTGATTATTTTA+AGG | - | chr3_2:61907287-61907306 | None:intergenic | 20.0% |
| !!! | TATTTTTCTTAGCATTAGTT+TGG | + | chr3_2:61907420-61907439 | Msa0415600:five_prime_UTR | 20.0% |
| !!! | GTGAATTTTCATATTTACTA+TGG | + | chr3_2:61907521-61907540 | Msa0415600:exon | 20.0% |
| !!! | TTTTCTTTCAATTATTGCTA+AGG | + | chr3_2:61907628-61907647 | Msa0415600:intron | 20.0% |
| !! | AGAATACAAAGAATTTACAT+TGG | + | chr3_2:61907801-61907820 | Msa0415600:intron | 20.0% |
| !! | ACAAATAACTTTGCTAATAA+TGG | - | chr3_2:61907909-61907928 | None:intergenic | 20.0% |
| !! | AAGTTATTTGTAATCAAAGA+TGG | + | chr3_2:61907918-61907937 | Msa0415600:intron | 20.0% |
| !! | AGTTATTTGTAATCAAAGAT+GGG | + | chr3_2:61907919-61907938 | Msa0415600:intron | 20.0% |
| !!! | TCTTTTCATAACAATGTTAT+AGG | - | chr3_2:61908118-61908137 | None:intergenic | 20.0% |
| !! | TAACATTGTTATGAAAAGAT+AGG | + | chr3_2:61908119-61908138 | Msa0415600:intron | 20.0% |
| !! | TAGCAAACATGTAAAAAATT+AGG | - | chr3_2:61908237-61908256 | None:intergenic | 20.0% |
| !! | CAATGCTAAAACTAATTATT+TGG | + | chr3_2:61908456-61908475 | Msa0415600:intron | 20.0% |
| !!! | TACAAATTTAGTCATACTTT+TGG | + | chr3_2:61908482-61908501 | Msa0415600:intron | 20.0% |
| !! | ATAAGTCATTCTTAAGTTTA+TGG | - | chr3_2:61908509-61908528 | None:intergenic | 20.0% |
| !!! | TTTATTTTCATAAGCTTTCT+AGG | - | chr3_2:61908817-61908836 | None:intergenic | 20.0% |
| !! | AGAATATAAGAATTAAAAGC+AGG | - | chr3_2:61908939-61908958 | None:intergenic | 20.0% |
| !!! | AATTTATTTTTCGCTTTGTT+GGG | - | chr3_2:61909916-61909935 | None:intergenic | 20.0% |
| !!! | ATTCAGAGAAATATTCATTT+TGG | + | chr3_2:61909933-61909952 | Msa0415600:intron | 20.0% |
| !! | AATTAATTGAATGAAGAAGT+TGG | + | chr3_2:61909956-61909975 | Msa0415600:intron | 20.0% |
| !!! | AACTTTTTTTTTCTGAAACA+TGG | + | chr3_2:61910703-61910722 | Msa0415600:intron | 20.0% |
| !! | TATTTACTCAATAGAAACAA+TGG | - | chr3_2:61911009-61911028 | None:intergenic | 20.0% |
| !!! | TTGTTTCATACTTTTTACTA+TGG | + | chr3_2:61911255-61911274 | Msa0415600:intron | 20.0% |
| !!! | TGAAATTCTTTCTTTTATCT+TGG | - | chr3_2:61911299-61911318 | None:intergenic | 20.0% |
| !!! | TTATTTTAGGAACCTTTTTA+AGG | + | chr3_2:61911574-61911593 | Msa0415600:CDS | 20.0% |
| !! | AGAAAAAAATTGAATTCCTT+TGG | - | chr3_2:61911620-61911639 | None:intergenic | 20.0% |
| !!! | TATCTTTCAAGTTCTAAATT+AGG | + | chr3_2:61911773-61911792 | Msa0415600:three_prime_UTR | 20.0% |
| !!! | TGATAAATGGATTGAAACTA+AGG | - | chr3_2:61907193-61907212 | None:intergenic | 25.0% |
| ! | TTAGTTTCAATCCATTTATC+AGG | + | chr3_2:61907192-61907211 | Msa0415600:five_prime_UTR | 25.0% |
| ! | ATGCTAAGAAAAATAAACCT+TGG | - | chr3_2:61907415-61907434 | None:intergenic | 25.0% |
| !!! | TTAGTTTGGTTCTTTAATTG+TGG | + | chr3_2:61907434-61907453 | Msa0415600:five_prime_UTR | 25.0% |
| ! | TTCAGTGTAATTATTTGTGT+CGG | - | chr3_2:61907675-61907694 | None:intergenic | 25.0% |
| ! | TATTGTGTATGGAGAAAATT+TGG | + | chr3_2:61908009-61908028 | Msa0415600:intron | 25.0% |
| ! | AAAGATCAATCACTACTAAA+TGG | + | chr3_2:61908077-61908096 | Msa0415600:intron | 25.0% |
| !! | TCAAGTTGTTTATTCAAACA+GGG | - | chr3_2:61908720-61908739 | None:intergenic | 25.0% |
| !! | ATCAAGTTGTTTATTCAAAC+AGG | - | chr3_2:61908721-61908740 | None:intergenic | 25.0% |
| ! | TTATACAATTTCAACACACA+TGG | - | chr3_2:61909037-61909056 | None:intergenic | 25.0% |
| ! | TGTGTGTTGAAATTGTATAA+AGG | + | chr3_2:61909037-61909056 | Msa0415600:CDS | 25.0% |
| ! | AAATCATTAACGTGTAACAA+AGG | + | chr3_2:61909298-61909317 | Msa0415600:intron | 25.0% |
| ! | TGAATGAAGGTGAAAATTAT+CGG | + | chr3_2:61909627-61909646 | Msa0415600:intron | 25.0% |
| !!! | GAATTTATTTTTCGCTTTGT+TGG | - | chr3_2:61909917-61909936 | None:intergenic | 25.0% |
| ! | TTGGTTATATTAGTTAGCTA+AGG | - | chr3_2:61910024-61910043 | None:intergenic | 25.0% |
| ! | GTAGTAATTTAGTTATGCTA+TGG | - | chr3_2:61910252-61910271 | None:intergenic | 25.0% |
| ! | TAGCTTATGTTACTAACAAA+TGG | + | chr3_2:61910382-61910401 | Msa0415600:intron | 25.0% |
| ! | AACTGAAATGTTATCTTTGT+AGG | + | chr3_2:61910585-61910604 | Msa0415600:intron | 25.0% |
| ! | ACTGAAATGTTATCTTTGTA+GGG | + | chr3_2:61910586-61910605 | Msa0415600:intron | 25.0% |
| ! | GTTTCATACCTTCAAATAAT+AGG | - | chr3_2:61910635-61910654 | None:intergenic | 25.0% |
| !! | GCTACTGATATAAGTTATTT+TGG | + | chr3_2:61910725-61910744 | Msa0415600:intron | 25.0% |
| ! | AAAAAATTGCATACAGTATG+TGG | + | chr3_2:61910752-61910771 | Msa0415600:intron | 25.0% |
| !! | TAAATTTTGAACTCACACAT+AGG | - | chr3_2:61910863-61910882 | None:intergenic | 25.0% |
| ! | CTGTTCAATGTTCAATTTAA+TGG | - | chr3_2:61910892-61910911 | None:intergenic | 25.0% |
| !! | GATCTTCAACATTTAGATTT+TGG | - | chr3_2:61911118-61911137 | None:intergenic | 25.0% |
| ! | GTTGTACAAACAATTATACA+TGG | - | chr3_2:61911451-61911470 | None:intergenic | 25.0% |
| !!! | ATTACACCATGACTTATTTT+AGG | + | chr3_2:61911561-61911580 | Msa0415600:CDS | 25.0% |
| !! | AATGAAAGCATACCTTAAAA+AGG | - | chr3_2:61911589-61911608 | None:intergenic | 25.0% |
| ! | ATTTCAGGACCAATATTTAT+AGG | - | chr3_2:61911696-61911715 | None:intergenic | 25.0% |
| GAAACTAAGGTGAAATCATA+AGG | - | chr3_2:61907180-61907199 | None:intergenic | 30.0% | |
| TAACTAACTCATTCAGCTTA+TGG | + | chr3_2:61907367-61907386 | Msa0415600:five_prime_UTR | 30.0% | |
| !! | TTTAATTGTGGAAGTGTTGA+TGG | + | chr3_2:61907446-61907465 | Msa0415600:five_prime_UTR | 30.0% |
| AGCATTCTTAATGACTTTGA+AGG | - | chr3_2:61907552-61907571 | None:intergenic | 30.0% | |
| TCTTAAATAATTAGTGGGGT+CGG | + | chr3_2:61907706-61907725 | Msa0415600:intron | 30.0% | |
| CTTTGTATTCTTTCATGATG+AGG | - | chr3_2:61907792-61907811 | None:intergenic | 30.0% | |
| !!! | ATGTTTTGGAAAGACAGATT+GGG | - | chr3_2:61907867-61907886 | None:intergenic | 30.0% |
| !!! | AATGTTTTGGAAAGACAGAT+TGG | - | chr3_2:61907868-61907887 | None:intergenic | 30.0% |
| ! | GTCTTTCCAAAACATTGATT+AGG | + | chr3_2:61907872-61907891 | Msa0415600:intron | 30.0% |
| ! | ACTGTACCTAATCAATGTTT+TGG | - | chr3_2:61907881-61907900 | None:intergenic | 30.0% |
| TGTATGGAGAAAATTTGGTT+CGG | + | chr3_2:61908014-61908033 | Msa0415600:intron | 30.0% | |
| ATCTTTGTCGAGGAATTTAT+TGG | - | chr3_2:61908063-61908082 | None:intergenic | 30.0% | |
| AATCAATGAATTCCTCTCAT+TGG | + | chr3_2:61908298-61908317 | Msa0415600:intron | 30.0% | |
| AAAAAAATCATTAGCCACGA+GGG | - | chr3_2:61908569-61908588 | None:intergenic | 30.0% | |
| AAAAAAAATCATTAGCCACG+AGG | - | chr3_2:61908570-61908589 | None:intergenic | 30.0% | |
| AACTAAAGTTTCCTTCTTAG+AGG | + | chr3_2:61908614-61908633 | Msa0415600:intron | 30.0% | |
| ! | AAACCCTTTTGTCTTAATCA+TGG | - | chr3_2:61908693-61908712 | None:intergenic | 30.0% |
| ! | GATTAAGACAAAAGGGTTTT+AGG | + | chr3_2:61908694-61908713 | Msa0415600:intron | 30.0% |
| GTGTTGAAATTGTATAAAGG+AGG | + | chr3_2:61909040-61909059 | Msa0415600:CDS | 30.0% | |
| GAGTAATGATGATCAATGAA+GGG | + | chr3_2:61909550-61909569 | Msa0415600:intron | 30.0% | |
| AGTAATGATGATCAATGAAG+GGG | + | chr3_2:61909551-61909570 | Msa0415600:intron | 30.0% | |
| GATAGTTGATCAATGAATGA+AGG | + | chr3_2:61909614-61909633 | Msa0415600:intron | 30.0% | |
| CTCTTCCATATATGTTCTTA+AGG | - | chr3_2:61909785-61909804 | None:intergenic | 30.0% | |
| TAAGAACATATATGGAAGAG+TGG | + | chr3_2:61909785-61909804 | Msa0415600:intron | 30.0% | |
| GCAGAATGGATCAAATTTAT+AGG | + | chr3_2:61910162-61910181 | Msa0415600:intron | 30.0% | |
| TACTGTAGTATACACTTGAT+TGG | - | chr3_2:61910214-61910233 | None:intergenic | 30.0% | |
| TAAGGAGAATTATTTGTGCT+TGG | + | chr3_2:61910422-61910441 | Msa0415600:CDS | 30.0% | |
| AAAGGAAGCCTATTATTTGA+AGG | + | chr3_2:61910624-61910643 | Msa0415600:CDS | 30.0% | |
| ! | AGTCAACGAGTCATATTTTT+AGG | - | chr3_2:61910929-61910948 | None:intergenic | 30.0% |
| ! | ATTATTTCTCATGTAGACTG+TGG | + | chr3_2:61911031-61911050 | Msa0415600:intron | 30.0% |
| ! | ATTGAAGTTTTCTTTCCAAC+TGG | + | chr3_2:61911536-61911555 | Msa0415600:CDS | 30.0% |
| AAGGTTCCTAAAATAAGTCA+TGG | - | chr3_2:61911570-61911589 | None:intergenic | 30.0% | |
| GGAGAAACACCTATAAATAT+TGG | + | chr3_2:61911684-61911703 | Msa0415600:CDS | 30.0% | |
| TGAAAGATAAATCATCCACA+TGG | - | chr3_2:61911762-61911781 | None:intergenic | 30.0% | |
| ! | CGAGTTTCTTTAGGTTTATT+CGG | + | chr3_2:61911873-61911892 | Msa0415600:three_prime_UTR | 30.0% |
| !! | CTTTTCATATGATTTGCACT+TGG | + | chr3_2:61911935-61911954 | Msa0415600:three_prime_UTR | 30.0% |
| GGAGTGTATGAATGAATTGT+TGG | - | chr3_2:61907159-61907178 | None:intergenic | 35.0% | |
| !! | TGCAGCTTTTTCCTGATAAA+TGG | - | chr3_2:61907206-61907225 | None:intergenic | 35.0% |
| GCAATTATCTGCATTCTTTG+TGG | - | chr3_2:61907236-61907255 | None:intergenic | 35.0% | |
| AGTACTAGTACAGTGAAAGT+GGG | + | chr3_2:61907473-61907492 | Msa0415600:five_prime_UTR | 35.0% | |
| ! | GAAAGTGGGAAACTTTTCTA+AGG | + | chr3_2:61907487-61907506 | Msa0415600:five_prime_UTR | 35.0% |
| GTCATTAAGAATGCTGTTGA+TGG | + | chr3_2:61907557-61907576 | Msa0415600:CDS | 35.0% | |
| ! | CAAGTTGTTTGTAAAGTACC+TGG | - | chr3_2:61907601-61907620 | None:intergenic | 35.0% |
| CAGGTACTTTACAAACAACT+TGG | + | chr3_2:61907599-61907618 | Msa0415600:intron | 35.0% | |
| !! | GTCGGTGTCACTATATAAAA+GGG | - | chr3_2:61907657-61907676 | None:intergenic | 35.0% |
| !! | TGTCGGTGTCACTATATAAA+AGG | - | chr3_2:61907658-61907677 | None:intergenic | 35.0% |
| AATCAAAGATGGGAGAAATC+TGG | + | chr3_2:61907929-61907948 | Msa0415600:intron | 35.0% | |
| AGAGGAGAATCTACATTATG+TGG | + | chr3_2:61908037-61908056 | Msa0415600:intron | 35.0% | |
| GATCAATCACTACTAAATGG+TGG | + | chr3_2:61908080-61908099 | Msa0415600:intron | 35.0% | |
| ACATTTGTTTGTCCTTCTGT+TGG | + | chr3_2:61908176-61908195 | Msa0415600:intron | 35.0% | |
| CATTTGTTTGTCCTTCTGTT+GGG | + | chr3_2:61908177-61908196 | Msa0415600:intron | 35.0% | |
| ATTTGTTTGTCCTTCTGTTG+GGG | + | chr3_2:61908178-61908197 | Msa0415600:intron | 35.0% | |
| TATGTATAATCCCCAACAGA+AGG | - | chr3_2:61908191-61908210 | None:intergenic | 35.0% | |
| TTCTGTTGGGGATTATACAT+AGG | + | chr3_2:61908190-61908209 | Msa0415600:intron | 35.0% | |
| TGAGTTATTCTACCAATGAG+AGG | - | chr3_2:61908313-61908332 | None:intergenic | 35.0% | |
| CTCATTGGTAGAATAACTCA+AGG | + | chr3_2:61908313-61908332 | Msa0415600:intron | 35.0% | |
| ATAACTCAAGGATTGCATCA+AGG | + | chr3_2:61908325-61908344 | Msa0415600:CDS | 35.0% | |
| CACATTGAACTGATTATGCA+TGG | - | chr3_2:61908435-61908454 | None:intergenic | 35.0% | |
| CATGCATAATCAGTTCAATG+TGG | + | chr3_2:61908433-61908452 | Msa0415600:intron | 35.0% | |
| ! | TAATTATTTCTTTCCCCTCG+TGG | + | chr3_2:61908552-61908571 | Msa0415600:intron | 35.0% |
| AAAAAATCATTAGCCACGAG+GGG | - | chr3_2:61908568-61908587 | None:intergenic | 35.0% | |
| !!! | TTTTTTCCTTGTTTGCCTCT+TGG | + | chr3_2:61908584-61908603 | Msa0415600:intron | 35.0% |
| ! | CTTTAGTTCCAAATTCCAAG+AGG | - | chr3_2:61908602-61908621 | None:intergenic | 35.0% |
| TCTTAATCATGGCACAAAAC+TGG | - | chr3_2:61908682-61908701 | None:intergenic | 35.0% | |
| TGTGCCATGATTAAGACAAA+AGG | + | chr3_2:61908686-61908705 | Msa0415600:intron | 35.0% | |
| GTGCCATGATTAAGACAAAA+GGG | + | chr3_2:61908687-61908706 | Msa0415600:intron | 35.0% | |
| !!! | TCTTGTTTTGAGCAGCATTT+AGG | + | chr3_2:61908965-61908984 | Msa0415600:CDS | 35.0% |
| !!! | AACTTCAGTTCCTTTTTCAG+AGG | + | chr3_2:61909162-61909181 | Msa0415600:CDS | 35.0% |
| !! | AAAGGAGTATCCTCTGAAAA+AGG | - | chr3_2:61909175-61909194 | None:intergenic | 35.0% |
| GTTAAGTTTCTTACCTGCAA+AGG | - | chr3_2:61909193-61909212 | None:intergenic | 35.0% | |
| !! | TGATGTTTGTTGTGCTTACA+TGG | + | chr3_2:61909268-61909287 | Msa0415600:intron | 35.0% |
| ATGTCATAAGTTGTCTCTAC+AGG | + | chr3_2:61909334-61909353 | Msa0415600:intron | 35.0% | |
| TGTGACACGCTTAATTCAAA+AGG | - | chr3_2:61909405-61909424 | None:intergenic | 35.0% | |
| ACATGTCAGAAACATCTATG+AGG | + | chr3_2:61909510-61909529 | Msa0415600:intron | 35.0% | |
| CATGTCAGAAACATCTATGA+GGG | + | chr3_2:61909511-61909530 | Msa0415600:intron | 35.0% | |
| TGAGGGTTATAAAGATGTGT+CGG | + | chr3_2:61909528-61909547 | Msa0415600:intron | 35.0% | |
| GGAGTAATGATGATCAATGA+AGG | + | chr3_2:61909549-61909568 | Msa0415600:intron | 35.0% | |
| AAGGTGAAAATTATCGGTGT+TGG | + | chr3_2:61909633-61909652 | Msa0415600:intron | 35.0% | |
| ! | AGTTAAAAGCATAGCTGCAT+AGG | - | chr3_2:61909662-61909681 | None:intergenic | 35.0% |
| GCAAGCCTTAAGAACATATA+TGG | + | chr3_2:61909777-61909796 | Msa0415600:intron | 35.0% | |
| !! | ATAGAAAAGAGTGTTCTACC+AGG | + | chr3_2:61909849-61909868 | Msa0415600:intron | 35.0% |
| AGTTGTGATTAGTAGCTAGT+TGG | - | chr3_2:61910043-61910062 | None:intergenic | 35.0% | |
| AACTACAAGGATACAGAACA+TGG | - | chr3_2:61910324-61910343 | None:intergenic | 35.0% | |
| AGCACAGAAATTCAACTACA+AGG | - | chr3_2:61910337-61910356 | None:intergenic | 35.0% | |
| ! | CAAATGGCTTGTAACTGTAT+AGG | + | chr3_2:61910398-61910417 | Msa0415600:intron | 35.0% |
| GCTTGTAACTGTATAGGTTA+AGG | + | chr3_2:61910404-61910423 | Msa0415600:intron | 35.0% | |
| TATTTCATCCAAGCAACAGT+TGG | - | chr3_2:61910480-61910499 | None:intergenic | 35.0% | |
| ! | TGTTATCTTTGTAGGGTGTT+TGG | + | chr3_2:61910593-61910612 | Msa0415600:intron | 35.0% |
| ! | TTTTGAACTCACACATAGGA+GGG | - | chr3_2:61910859-61910878 | None:intergenic | 35.0% |
| ! | ATTTTGAACTCACACATAGG+AGG | - | chr3_2:61910860-61910879 | None:intergenic | 35.0% |
| TAGGCTTGTGTTTGTAAGAA+AGG | - | chr3_2:61911153-61911172 | None:intergenic | 35.0% | |
| TTCTTACAAACACAAGCCTA+TGG | + | chr3_2:61911153-61911172 | Msa0415600:CDS | 35.0% | |
| ! | TTTCAACAAAGAGAGCATGT+TGG | + | chr3_2:61911314-61911333 | Msa0415600:intron | 35.0% |
| AACTTTCTGCATGTGAAGAT+TGG | + | chr3_2:61911468-61911487 | Msa0415600:intron | 35.0% | |
| CTTTCATTGCTAAACACCAA+AGG | + | chr3_2:61911601-61911620 | Msa0415600:intron | 35.0% | |
| ATATGAACAGCTTGAGAAGT+TGG | - | chr3_2:61911654-61911673 | None:intergenic | 35.0% | |
| TACGATCAACGAGTTTCTTT+AGG | + | chr3_2:61911864-61911883 | Msa0415600:three_prime_UTR | 35.0% | |
| GAAAAGCCTTCATGATAGTT+AGG | + | chr3_2:61911908-61911927 | Msa0415600:three_prime_UTR | 35.0% | |
| AGAACTCCTAACTATCATGA+AGG | - | chr3_2:61911917-61911936 | None:intergenic | 35.0% | |
| GAGTACTAGTACAGTGAAAG+TGG | + | chr3_2:61907472-61907491 | Msa0415600:five_prime_UTR | 40.0% | |
| ! | TGTAAAGTACCTGGAGAAGA+AGG | - | chr3_2:61907592-61907611 | None:intergenic | 40.0% |
| ATGAAGCACGAATACAGACA+CGG | - | chr3_2:61907735-61907754 | None:intergenic | 40.0% | |
| TGTATTCGTGCTTCATGGTT+CGG | + | chr3_2:61907739-61907758 | Msa0415600:intron | 40.0% | |
| CGAATCTTGGCTATTGTGTA+TGG | + | chr3_2:61907998-61908017 | Msa0415600:intron | 40.0% | |
| GTAGTGATTGATCTTTGTCG+AGG | - | chr3_2:61908073-61908092 | None:intergenic | 40.0% | |
| TCAGCAGAGAAGTTTGACAA+TGG | - | chr3_2:61908390-61908409 | None:intergenic | 40.0% | |
| ! | GCTGATACAGATTCTTTTCC+TGG | + | chr3_2:61908405-61908424 | Msa0415600:CDS | 40.0% |
| CTGATTATGCATGGAATACC+AGG | - | chr3_2:61908426-61908445 | None:intergenic | 40.0% | |
| CAAATTCCAAGAGGCAAACA+AGG | - | chr3_2:61908593-61908612 | None:intergenic | 40.0% | |
| CTTGTTTGCCTCTTGGAATT+TGG | + | chr3_2:61908591-61908610 | Msa0415600:intron | 40.0% | |
| ! | GAAGATTCTCACCTCTAAGA+AGG | - | chr3_2:61908628-61908647 | None:intergenic | 40.0% |
| TTATGCAAACCAGTCGAAAC+AGG | + | chr3_2:61908904-61908923 | Msa0415600:intron | 40.0% | |
| AACTAATGACCTGTTTCGAC+TGG | - | chr3_2:61908916-61908935 | None:intergenic | 40.0% | |
| GAAGTTGCAAAATTGCAAGC+TGG | - | chr3_2:61909148-61909167 | None:intergenic | 40.0% | |
| GCGTACATATCTATGAAGCA+CGG | + | chr3_2:61909376-61909395 | Msa0415600:intron | 40.0% | |
| ! | TAGTTATGCTATGGACTGAG+TGG | - | chr3_2:61910243-61910262 | None:intergenic | 40.0% |
| !! | GGGTGTTTGGTCTTTTACAA+AGG | + | chr3_2:61910606-61910625 | Msa0415600:intron | 40.0% |
| GTTTCGCTAACAGATAGCTA+GGG | - | chr3_2:61910657-61910676 | None:intergenic | 40.0% | |
| TGTTTCGCTAACAGATAGCT+AGG | - | chr3_2:61910658-61910677 | None:intergenic | 40.0% | |
| AGCTATCTGTTAGCGAAACA+TGG | + | chr3_2:61910658-61910677 | Msa0415600:intron | 40.0% | |
| ATACAGTATGTGGAAGATGC+AGG | + | chr3_2:61910762-61910781 | Msa0415600:intron | 40.0% | |
| TACAGTATGTGGAAGATGCA+GGG | + | chr3_2:61910763-61910782 | Msa0415600:intron | 40.0% | |
| GTTGACATAGTGTAGTTGAC+TGG | - | chr3_2:61911089-61911108 | None:intergenic | 40.0% | |
| GCCTATGGAGATATGACAAA+CGG | + | chr3_2:61911168-61911187 | Msa0415600:CDS | 40.0% | |
| TCCGTTTGTCATATCTCCAT+AGG | - | chr3_2:61911172-61911191 | None:intergenic | 40.0% | |
| GCATGTGAAGATTGGTACAA+TGG | + | chr3_2:61911476-61911495 | Msa0415600:intron | 40.0% | |
| TGCTAATACCAACTGAGGTT+GGG | - | chr3_2:61911510-61911529 | None:intergenic | 40.0% | |
| AGATCTGCTAATACCAACTG+AGG | - | chr3_2:61911515-61911534 | None:intergenic | 40.0% | |
| GTCATGGTGTAATTTCCAGT+TGG | - | chr3_2:61911554-61911573 | None:intergenic | 40.0% | |
| AGCTGTTCATATCATCTTGC+AGG | + | chr3_2:61911662-61911681 | Msa0415600:intron | 40.0% | |
| GCTGTTCATATCATCTTGCA+GGG | + | chr3_2:61911663-61911682 | Msa0415600:intron | 40.0% | |
| TATGGTAGGATCCAATGTTG+AGG | - | chr3_2:61911736-61911755 | None:intergenic | 40.0% | |
| AAATCATCCACATGGCACTA+TGG | - | chr3_2:61911754-61911773 | None:intergenic | 40.0% | |
| TGGATTCAGCTCATTGCTCT+TGG | + | chr3_2:61907387-61907406 | Msa0415600:five_prime_UTR | 45.0% | |
| GTGTCTGTATTCGTGCTTCA+TGG | + | chr3_2:61907734-61907753 | Msa0415600:intron | 45.0% | |
| ! | ATGGGAGAAATCTGGTTCCT+CGG | + | chr3_2:61907937-61907956 | Msa0415600:intron | 45.0% |
| ATTCGAACCCTAGCCACTTA+CGG | - | chr3_2:61907983-61908002 | None:intergenic | 45.0% | |
| !! | GGAGAAAATTTGGTTCGGAG+AGG | + | chr3_2:61908019-61908038 | Msa0415600:intron | 45.0% |
| AGGTACAAACACAGCTTAGC+AGG | - | chr3_2:61908267-61908286 | None:intergenic | 45.0% | |
| TGAGCAGCATTTAGGCTTAC+TGG | + | chr3_2:61908973-61908992 | Msa0415600:CDS | 45.0% | |
| TTCAGAGGATACTCCTTTGC+AGG | + | chr3_2:61909177-61909196 | Msa0415600:CDS | 45.0% | |
| !! | TAGTGTTGATGTGTCGTGTC+AGG | + | chr3_2:61909686-61909705 | Msa0415600:intron | 45.0% |
| ! | TGTCGGAGCTTTTGCTTCAT+AGG | + | chr3_2:61909715-61909734 | Msa0415600:intron | 45.0% |
| CACTTTGACAGAGAGCAGAA+TGG | + | chr3_2:61910148-61910167 | Msa0415600:intron | 45.0% | |
| CATTCAAGCCAACTGTTGCT+TGG | + | chr3_2:61910469-61910488 | Msa0415600:CDS | 45.0% | |
| ACAGTATGTGGAAGATGCAG+GGG | + | chr3_2:61910764-61910783 | Msa0415600:intron | 45.0% | |
| TGTCTCTGATCCTGATGACT+TGG | + | chr3_2:61910821-61910840 | Msa0415600:CDS | 45.0% | |
| TGCAATTCCTCCAAGTCATC+AGG | - | chr3_2:61910834-61910853 | None:intergenic | 45.0% | |
| CGGATTCAAAGTTCGTCTCT+TGG | + | chr3_2:61911188-61911207 | Msa0415600:CDS | 45.0% | |
| CTGCTAATACCAACTGAGGT+TGG | - | chr3_2:61911511-61911530 | None:intergenic | 45.0% | |
| TTGGTCCTGAAATGTGTGAC+AGG | + | chr3_2:61911703-61911722 | Msa0415600:CDS | 45.0% | |
| TGGTCCTGAAATGTGTGACA+GGG | + | chr3_2:61911704-61911723 | Msa0415600:CDS | 45.0% | |
| GCTCATTGCTCTTGGTTCCA+AGG | + | chr3_2:61907395-61907414 | Msa0415600:five_prime_UTR | 50.0% | |
| !! | GCTTCATGGTTCGGTAGTCA+TGG | + | chr3_2:61907748-61907767 | Msa0415600:intron | 50.0% |
| ! | TCTGGTTCCTCGGAGTAGTA+AGG | + | chr3_2:61907947-61907966 | Msa0415600:intron | 50.0% |
| TTGGACACCGTAAGTGGCTA+GGG | + | chr3_2:61907973-61907992 | Msa0415600:intron | 50.0% | |
| AGTGGCTAGGGTTCGAATCT+TGG | + | chr3_2:61907985-61908004 | Msa0415600:intron | 50.0% | |
| GGCTTACTGGAGAGCTTGAA+AGG | + | chr3_2:61908986-61909005 | Msa0415600:CDS | 50.0% | |
| TGGAGAAGTCACTGTGTCTG+AGG | - | chr3_2:61909017-61909036 | None:intergenic | 50.0% | |
| GTCGTGTCAGGTGTCTATGT+CGG | + | chr3_2:61909698-61909717 | Msa0415600:intron | 50.0% | |
| AGCGCAGAAAATCTGCAACC+TGG | - | chr3_2:61909870-61909889 | None:intergenic | 50.0% | |
| ! | CTCCATGTTGAGAAGCATGG+TGG | + | chr3_2:61909888-61909907 | Msa0415600:intron | 50.0% |
| CTCCACCATGCTTCTCAACA+TGG | - | chr3_2:61909893-61909912 | None:intergenic | 50.0% | |
| CAGTATGTGGAAGATGCAGG+GGG | + | chr3_2:61910765-61910784 | Msa0415600:intron | 50.0% | |
| ! | AGATGCAGGGGGAGAGATTT+TGG | + | chr3_2:61910776-61910795 | Msa0415600:CDS | 50.0% |
| ! | CTCTGATCCTGATGACTTGG+AGG | + | chr3_2:61910824-61910843 | Msa0415600:CDS | 50.0% |
| AGCAGTTTCCCAACCTCAGT+TGG | + | chr3_2:61911499-61911518 | Msa0415600:CDS | 50.0% | |
| GTGTCCCTGTCACACATTTC+AGG | - | chr3_2:61911711-61911730 | None:intergenic | 50.0% | |
| CAGGGACACATCCTCAACAT+TGG | + | chr3_2:61911722-61911741 | Msa0415600:CDS | 50.0% | |
| GATCCTACCATAGTGCCATG+TGG | + | chr3_2:61911744-61911763 | Msa0415600:CDS | 50.0% | |
| CATCCACATGGCACTATGGT+AGG | - | chr3_2:61911750-61911769 | None:intergenic | 50.0% | |
| CCTGGAGAAGAAGGTAGCTC+TGG | - | chr3_2:61907583-61907602 | None:intergenic | 55.0% | |
| CCAGAGCTACCTTCTTCTCC+AGG | + | chr3_2:61907580-61907599 | Msa0415600:CDS | 55.0% | |
| CCAAGTGCCTTACTACTCCG+AGG | - | chr3_2:61907957-61907976 | None:intergenic | 55.0% | |
| ! | CCTCGGAGTAGTAAGGCACT+TGG | + | chr3_2:61907954-61907973 | Msa0415600:intron | 55.0% |
| AGGCACTTGGACACCGTAAG+TGG | + | chr3_2:61907967-61907986 | Msa0415600:intron | 55.0% | |
| CTTGGACACCGTAAGTGGCT+AGG | + | chr3_2:61907972-61907991 | Msa0415600:intron | 55.0% | |
| GCGCTCCATGTTGAGAAGCA+TGG | + | chr3_2:61909885-61909904 | Msa0415600:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 61907155 | 61911963 | 61907155 | ID=Msa0415600;Name=Msa0415600 |
| chr3_2 | mRNA | 61907155 | 61911963 | 61907155 | ID=Msa0415600-mRNA-1;Parent=Msa0415600;Name=Msa0415600-mRNA-1;_AED=0.10;_eAED=0.10;_QI=385|0.87|1|1|0.87|0.88|9|193|327 |
| chr3_2 | exon | 61907155 | 61907601 | 61907155 | ID=Msa0415600-mRNA-1:exon:13172;Parent=Msa0415600-mRNA-1 |
| chr3_2 | exon | 61908324 | 61908426 | 61908324 | ID=Msa0415600-mRNA-1:exon:13173;Parent=Msa0415600-mRNA-1 |
| chr3_2 | exon | 61908965 | 61909198 | 61908965 | ID=Msa0415600-mRNA-1:exon:13174;Parent=Msa0415600-mRNA-1 |
| chr3_2 | exon | 61910420 | 61910506 | 61910420 | ID=Msa0415600-mRNA-1:exon:13175;Parent=Msa0415600-mRNA-1 |
| chr3_2 | exon | 61910607 | 61910645 | 61910607 | ID=Msa0415600-mRNA-1:exon:13176;Parent=Msa0415600-mRNA-1 |
| chr3_2 | exon | 61910768 | 61910866 | 61910768 | ID=Msa0415600-mRNA-1:exon:13177;Parent=Msa0415600-mRNA-1 |
| chr3_2 | exon | 61911047 | 61911209 | 61911047 | ID=Msa0415600-mRNA-1:exon:13178;Parent=Msa0415600-mRNA-1 |
| chr3_2 | exon | 61911486 | 61911595 | 61911486 | ID=Msa0415600-mRNA-1:exon:13179;Parent=Msa0415600-mRNA-1 |
| chr3_2 | exon | 61911684 | 61911963 | 61911684 | ID=Msa0415600-mRNA-1:exon:13180;Parent=Msa0415600-mRNA-1 |
| chr3_2 | five_prime_UTR | 61907155 | 61907539 | 61907155 | ID=Msa0415600-mRNA-1:five_prime_utr;Parent=Msa0415600-mRNA-1 |
| chr3_2 | CDS | 61907540 | 61907601 | 61907540 | ID=Msa0415600-mRNA-1:cds;Parent=Msa0415600-mRNA-1 |
| chr3_2 | CDS | 61908324 | 61908426 | 61908324 | ID=Msa0415600-mRNA-1:cds;Parent=Msa0415600-mRNA-1 |
| chr3_2 | CDS | 61908965 | 61909198 | 61908965 | ID=Msa0415600-mRNA-1:cds;Parent=Msa0415600-mRNA-1 |
| chr3_2 | CDS | 61910420 | 61910506 | 61910420 | ID=Msa0415600-mRNA-1:cds;Parent=Msa0415600-mRNA-1 |
| chr3_2 | CDS | 61910607 | 61910645 | 61910607 | ID=Msa0415600-mRNA-1:cds;Parent=Msa0415600-mRNA-1 |
| chr3_2 | CDS | 61910768 | 61910866 | 61910768 | ID=Msa0415600-mRNA-1:cds;Parent=Msa0415600-mRNA-1 |
| chr3_2 | CDS | 61911047 | 61911209 | 61911047 | ID=Msa0415600-mRNA-1:cds;Parent=Msa0415600-mRNA-1 |
| chr3_2 | CDS | 61911486 | 61911595 | 61911486 | ID=Msa0415600-mRNA-1:cds;Parent=Msa0415600-mRNA-1 |
| chr3_2 | CDS | 61911684 | 61911770 | 61911684 | ID=Msa0415600-mRNA-1:cds;Parent=Msa0415600-mRNA-1 |
| chr3_2 | three_prime_UTR | 61911771 | 61911963 | 61911771 | ID=Msa0415600-mRNA-1:three_prime_utr;Parent=Msa0415600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
