Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0906670 | XP_013451026.1 | 96.396 | 333 | 11 | 1 | 1 | 332 | 1 | 333 | 0.0 | 659 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0906670 | sp|Q9S7W5|TCP13_ARATH | 75.000 | 88 | 22 | 0 | 32 | 119 | 57 | 144 | 1.94e-39 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0906670 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0108850 | Msa0906670 | 0.826795 | 2.230267e-54 | -8.615850e-47 |
| Msa0151950 | Msa0906670 | 0.826305 | 2.918223e-54 | -8.615850e-47 |
| Msa0216560 | Msa0906670 | 0.803937 | 2.746760e-49 | -8.615850e-47 |
| Msa0256430 | Msa0906670 | 0.805634 | 1.214191e-49 | -8.615850e-47 |
| Msa0873930 | Msa0906670 | 0.983529 | 5.434908e-158 | -8.615850e-47 |
| Msa0906670 | Msa0934940 | -0.822309 | 2.538118e-53 | -8.615850e-47 |
| Msa0906670 | Msa0975970 | 0.803039 | 4.215722e-49 | -8.615850e-47 |
| Msa0906670 | Msa1041550 | 0.821107 | 4.813114e-53 | -8.615850e-47 |
| Msa0906670 | Msa1081530 | 0.810498 | 1.118930e-50 | -8.615850e-47 |
| Msa0906670 | Msa1120620 | 0.802176 | 6.350715e-49 | -8.615850e-47 |
| Msa0906670 | Msa1166450 | 0.824394 | 8.265712e-54 | -8.615850e-47 |
| Msa0906670 | Msa1357720 | 0.822938 | 1.812057e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0906670 | MtrunA17_Chr6g0454781 | 96.396 | 333 | 11 | 1 | 1 | 332 | 1 | 333 | 0.0 | 659 |
| Msa0906670 | MtrunA17_Chr7g0219461 | 44.149 | 376 | 140 | 18 | 2 | 332 | 1 | 351 | 2.42e-66 | 212 |
| Msa0906670 | MtrunA17_Chr4g0061561 | 69.318 | 88 | 27 | 0 | 27 | 114 | 35 | 122 | 2.40e-38 | 138 |
| Msa0906670 | MtrunA17_Chr3g0086961 | 63.303 | 109 | 37 | 2 | 22 | 128 | 28 | 135 | 4.54e-38 | 139 |
| Msa0906670 | MtrunA17_Chr8g0376571 | 72.222 | 72 | 20 | 0 | 39 | 110 | 51 | 122 | 5.07e-28 | 113 |
| Msa0906670 | MtrunA17_Chr2g0325171 | 58.140 | 86 | 30 | 2 | 27 | 109 | 5 | 87 | 9.24e-24 | 99.8 |
| Msa0906670 | MtrunA17_Chr4g0040921 | 56.250 | 96 | 36 | 2 | 27 | 119 | 3 | 95 | 1.16e-23 | 99.4 |
| Msa0906670 | MtrunA17_Chr8g0360441 | 53.261 | 92 | 40 | 1 | 19 | 110 | 27 | 115 | 8.77e-22 | 95.5 |
| Msa0906670 | MtrunA17_Chr2g0316391 | 63.235 | 68 | 25 | 0 | 43 | 110 | 14 | 81 | 9.49e-21 | 90.5 |
| Msa0906670 | MtrunA17_Chr6g0456881 | 42.857 | 105 | 55 | 2 | 50 | 150 | 127 | 230 | 1.25e-16 | 80.1 |
| Msa0906670 | MtrunA17_Chr7g0220931 | 56.140 | 57 | 25 | 0 | 51 | 107 | 122 | 178 | 7.40e-15 | 74.7 |
| Msa0906670 | MtrunA17_Chr4g0062691 | 58.621 | 58 | 24 | 0 | 50 | 107 | 133 | 190 | 8.55e-15 | 74.7 |
| Msa0906670 | MtrunA17_Chr1g0205131 | 51.667 | 60 | 29 | 0 | 48 | 107 | 108 | 167 | 2.88e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0906670 | AT3G02150.1 | 75.000 | 88 | 22 | 0 | 32 | 119 | 57 | 144 | 7.85e-41 | 144 |
| Msa0906670 | AT3G02150.2 | 75.000 | 88 | 22 | 0 | 32 | 119 | 57 | 144 | 1.97e-40 | 145 |
| Msa0906670 | AT5G60970.1 | 70.000 | 90 | 26 | 1 | 35 | 124 | 49 | 137 | 3.43e-38 | 139 |
| Msa0906670 | AT5G08070.2 | 67.778 | 90 | 26 | 1 | 26 | 115 | 13 | 99 | 9.26e-37 | 132 |
| Msa0906670 | AT5G08070.1 | 67.778 | 90 | 26 | 1 | 26 | 115 | 13 | 99 | 9.26e-37 | 132 |
| Msa0906670 | AT1G30210.2 | 70.833 | 72 | 21 | 0 | 39 | 110 | 40 | 111 | 5.95e-28 | 111 |
| Msa0906670 | AT1G30210.1 | 70.833 | 72 | 21 | 0 | 39 | 110 | 40 | 111 | 5.95e-28 | 111 |
| Msa0906670 | AT4G18390.1 | 69.444 | 72 | 22 | 0 | 39 | 110 | 32 | 103 | 3.03e-27 | 110 |
| Msa0906670 | AT4G18390.2 | 69.444 | 72 | 22 | 0 | 39 | 110 | 32 | 103 | 3.03e-27 | 110 |
| Msa0906670 | AT3G15030.2 | 64.286 | 70 | 22 | 1 | 43 | 109 | 39 | 108 | 1.47e-21 | 95.1 |
| Msa0906670 | AT3G15030.4 | 64.286 | 70 | 22 | 1 | 43 | 109 | 39 | 108 | 1.47e-21 | 95.1 |
| Msa0906670 | AT3G15030.3 | 64.286 | 70 | 22 | 1 | 43 | 109 | 39 | 108 | 1.47e-21 | 95.1 |
| Msa0906670 | AT3G15030.1 | 64.286 | 70 | 22 | 1 | 43 | 109 | 39 | 108 | 1.47e-21 | 95.1 |
| Msa0906670 | AT2G31070.1 | 66.154 | 65 | 22 | 0 | 43 | 107 | 23 | 87 | 2.92e-21 | 93.6 |
| Msa0906670 | AT1G53230.1 | 63.235 | 68 | 25 | 0 | 43 | 110 | 43 | 110 | 9.82e-21 | 92.4 |
| Msa0906670 | AT1G53230.2 | 63.235 | 68 | 25 | 0 | 43 | 110 | 43 | 110 | 9.82e-21 | 92.4 |
| Msa0906670 | AT3G18550.2 | 34.058 | 138 | 89 | 2 | 36 | 172 | 136 | 272 | 4.95e-15 | 75.9 |
| Msa0906670 | AT3G18550.1 | 44.706 | 85 | 46 | 1 | 36 | 120 | 136 | 219 | 1.21e-14 | 74.7 |
| Msa0906670 | AT3G18550.4 | 44.706 | 85 | 46 | 1 | 36 | 120 | 136 | 219 | 1.21e-14 | 74.7 |
| Msa0906670 | AT3G18550.3 | 34.266 | 143 | 86 | 4 | 36 | 172 | 136 | 276 | 1.31e-14 | 74.7 |
| Msa0906670 | AT1G67260.2 | 47.143 | 70 | 37 | 0 | 38 | 107 | 76 | 145 | 1.58e-14 | 73.9 |
| Msa0906670 | AT1G67260.3 | 47.143 | 70 | 37 | 0 | 38 | 107 | 76 | 145 | 1.58e-14 | 73.9 |
| Msa0906670 | AT1G67260.1 | 47.143 | 70 | 37 | 0 | 38 | 107 | 76 | 145 | 1.71e-14 | 73.9 |
| Msa0906670 | AT1G68800.2 | 46.269 | 67 | 36 | 0 | 41 | 107 | 104 | 170 | 3.72e-13 | 70.1 |
| Msa0906670 | AT1G68800.1 | 46.269 | 67 | 36 | 0 | 41 | 107 | 104 | 170 | 3.78e-13 | 70.1 |
Find 65 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAATCTTGATCTTTA+TGG | 0.044174 | 6_2:-5318307 | None:intergenic |
| ATTCCTCAATTATCAAATTT+TGG | 0.140046 | 6_2:+5318026 | Msa0906670:CDS |
| TTCCATCTATATCTTTAATT+TGG | 0.175055 | 6_2:-5318058 | None:intergenic |
| GGCAAAACAACACTTCAATT+TGG | 0.234675 | 6_2:+5317739 | Msa0906670:CDS |
| AATGGAAATTCAGCTTCTTT+TGG | 0.237631 | 6_2:-5317351 | None:intergenic |
| AGGAAAATCTTGATCTTTAT+GGG | 0.249668 | 6_2:-5318306 | None:intergenic |
| AACTCAACATTTGATCATAT+TGG | 0.267875 | 6_2:-5318190 | None:intergenic |
| ATCAAATTCTAAACAAGGTT+TGG | 0.270536 | 6_2:+5317764 | Msa0906670:CDS |
| AAATGTGGTGATAGACTATT+TGG | 0.273755 | 6_2:-5317888 | None:intergenic |
| AGCAAAGTATACACAATAAA+AGG | 0.279500 | 6_2:+5317498 | Msa0906670:CDS |
| TTGTTACTAACAAAGAAAAT+TGG | 0.289821 | 6_2:+5317793 | Msa0906670:CDS |
| GGAAGAACTTCTTGTTTCAA+TGG | 0.338725 | 6_2:-5317369 | None:intergenic |
| AAAGATATAGATGGAAATAA+TGG | 0.354082 | 6_2:+5318065 | Msa0906670:CDS |
| TCAAATTCTAAACAAGGTTT+GGG | 0.369970 | 6_2:+5317765 | Msa0906670:CDS |
| TAAAAGGACTAAGAGATAGA+AGG | 0.370333 | 6_2:+5317514 | Msa0906670:CDS |
| CATAGAGGTGAATTGCTGTT+TGG | 0.373931 | 6_2:-5317551 | None:intergenic |
| TATGATCTTCAAGATAGGTT+AGG | 0.379456 | 6_2:+5317570 | Msa0906670:CDS |
| GAATAGAAGTGAAGAGGATA+AGG | 0.381720 | 6_2:+5317818 | Msa0906670:CDS |
| GTGAGGGTGTCTAGAGCCTT+TGG | 0.385600 | 6_2:+5317459 | Msa0906670:CDS |
| GATGTAGTTGAATCATTTGA+TGG | 0.398042 | 6_2:-5317390 | None:intergenic |
| ATCATATTTGAGACATTGTC+AGG | 0.398351 | 6_2:-5317915 | None:intergenic |
| TATGCCACTTGGTTATCAAT+TGG | 0.411517 | 6_2:+5317986 | Msa0906670:CDS |
| CTATTTCTAATGATGATGTT+AGG | 0.414220 | 6_2:+5317718 | Msa0906670:CDS |
| AACCAAATTAAAGATATAGA+TGG | 0.417012 | 6_2:+5318056 | Msa0906670:CDS |
| AATCCAAAATTTGATAATTG+AGG | 0.428558 | 6_2:-5318029 | None:intergenic |
| CTAGACACCCTCACAATTCT+CGG | 0.444864 | 6_2:-5317450 | None:intergenic |
| ACCTCTATGATCTTCAAGAT+AGG | 0.446546 | 6_2:+5317565 | Msa0906670:CDS |
| CCTCAAGGAAACTTCACCTT+AGG | 0.453243 | 6_2:+5317675 | Msa0906670:CDS |
| AACCTAGCAAGGTTGTTGAT+TGG | 0.456423 | 6_2:+5317601 | Msa0906670:CDS |
| AATCAACAACCTTGCTAGGT+TGG | 0.486484 | 6_2:-5317599 | None:intergenic |
| ATGATCTTCAAGATAGGTTA+GGG | 0.493307 | 6_2:+5317571 | Msa0906670:CDS |
| TATTGGTAATTGATTTGTGT+TGG | 0.498253 | 6_2:-5318173 | None:intergenic |
| AGAAGGTTGATTTGCTCCAC+GGG | 0.498527 | 6_2:-5317943 | None:intergenic |
| GAAATAGTACTAGCAAAAGA+TGG | 0.507242 | 6_2:-5317702 | None:intergenic |
| TTGGTTGCTTAATATAGCTA+AGG | 0.527119 | 6_2:+5317620 | Msa0906670:CDS |
| GTTGACAAACACAATGATGA+TGG | 0.532225 | 6_2:-5318107 | None:intergenic |
| ACCCTCATGAGTTGTTGAGT+TGG | 0.533643 | 6_2:-5318239 | None:intergenic |
| CCTTGAGGTATTTGAAGTGG+TGG | 0.545071 | 6_2:-5317660 | None:intergenic |
| AAAAGGACTAAGAGATAGAA+GGG | 0.548162 | 6_2:+5317515 | Msa0906670:CDS |
| TGCACTGCTCCAACATGTGA+AGG | 0.549384 | 6_2:-5318143 | None:intergenic |
| ACATGTTGGAGCAGTGCAGA+TGG | 0.549860 | 6_2:+5318148 | Msa0906670:CDS |
| CAAACACAATGATGATGGAA+AGG | 0.552149 | 6_2:-5318102 | None:intergenic |
| AGCAAAAGATGGATAACCTA+AGG | 0.554824 | 6_2:-5317691 | None:intergenic |
| AGAGGATAAGGAGAAGAAAG+AGG | 0.558032 | 6_2:+5317830 | Msa0906670:CDS |
| GACTAAGAGATAGAAGGGTA+AGG | 0.563692 | 6_2:+5317520 | Msa0906670:CDS |
| AAGAAGGTTGATTTGCTCCA+CGG | 0.566627 | 6_2:-5317944 | None:intergenic |
| TGGAAATCAAATTCTAAACA+AGG | 0.571909 | 6_2:+5317759 | Msa0906670:CDS |
| TTTCCTTGAGGTATTTGAAG+TGG | 0.572428 | 6_2:-5317663 | None:intergenic |
| AAACACAATGATGATGGAAA+GGG | 0.575569 | 6_2:-5318101 | None:intergenic |
| TTGGATGAATAGAAGTGAAG+AGG | 0.578717 | 6_2:+5317812 | Msa0906670:CDS |
| TCAAATATGATTATCTCCCG+TGG | 0.582563 | 6_2:+5317927 | Msa0906670:CDS |
| TGAGGAATATGACTAGATGA+AGG | 0.598042 | 6_2:-5318011 | None:intergenic |
| ACCTATCTTGAAGATCATAG+AGG | 0.598434 | 6_2:-5317566 | None:intergenic |
| AACCAATCAACAACCTTGCT+AGG | 0.598789 | 6_2:-5317603 | None:intergenic |
| AGGGCTAAACCAACCTAGCA+AGG | 0.604516 | 6_2:+5317590 | Msa0906670:CDS |
| ATCCAACTCAACAACTCATG+AGG | 0.610385 | 6_2:+5318237 | Msa0906670:CDS |
| TTGTTGAATACTATGCCACT+TGG | 0.614899 | 6_2:+5317975 | Msa0906670:CDS |
| TAAAAGATCCGAGAATTGTG+AGG | 0.618056 | 6_2:+5317442 | Msa0906670:CDS |
| AAAAGATCCGAGAATTGTGA+GGG | 0.632124 | 6_2:+5317443 | Msa0906670:CDS |
| TCCAACTCAACAACTCATGA+GGG | 0.652080 | 6_2:+5318238 | Msa0906670:CDS |
| CCACCACTTCAAATACCTCA+AGG | 0.652969 | 6_2:+5317660 | Msa0906670:CDS |
| CATCATCAACAACATCGCAA+TGG | 0.655304 | 6_2:+5317412 | Msa0906670:CDS |
| CCTAAGGTGAAGTTTCCTTG+AGG | 0.673049 | 6_2:-5317675 | None:intergenic |
| GGCTCCAATTGATAACCAAG+TGG | 0.685997 | 6_2:-5317990 | None:intergenic |
| ACATTGTCAGGTACTAAATG+TGG | 0.701020 | 6_2:-5317903 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTACTAACAAAGAAAAT+TGG | + | chr6_2:5317793-5317812 | Msa0906670:CDS | 20.0% |
| !!! | ATTCCTCAATTATCAAATTT+TGG | + | chr6_2:5318026-5318045 | Msa0906670:CDS | 20.0% |
| !!! | AATCCAAAATTTGATAATTG+AGG | - | chr6_2:5318032-5318051 | None:intergenic | 20.0% |
| !! | AACCAAATTAAAGATATAGA+TGG | + | chr6_2:5318056-5318075 | Msa0906670:CDS | 20.0% |
| !! | TTCCATCTATATCTTTAATT+TGG | - | chr6_2:5318061-5318080 | None:intergenic | 20.0% |
| !! | AAAGATATAGATGGAAATAA+TGG | + | chr6_2:5318065-5318084 | Msa0906670:CDS | 20.0% |
| !! | TTGAGAGAATGAAAAAATTT+AGG | - | chr6_2:5318269-5318288 | None:intergenic | 20.0% |
| !! | TTGTTACTAACAAAGAAAAT+TGG | + | chr6_2:5317793-5317812 | Msa0906670:CDS | 20.0% |
| !!! | ATTCCTCAATTATCAAATTT+TGG | + | chr6_2:5318026-5318045 | Msa0906670:CDS | 20.0% |
| !!! | AATCCAAAATTTGATAATTG+AGG | - | chr6_2:5318032-5318051 | None:intergenic | 20.0% |
| !! | AACCAAATTAAAGATATAGA+TGG | + | chr6_2:5318056-5318075 | Msa0906670:CDS | 20.0% |
| !! | TTCCATCTATATCTTTAATT+TGG | - | chr6_2:5318061-5318080 | None:intergenic | 20.0% |
| !! | AAAGATATAGATGGAAATAA+TGG | + | chr6_2:5318065-5318084 | Msa0906670:CDS | 20.0% |
| !! | TTGAGAGAATGAAAAAATTT+AGG | - | chr6_2:5318269-5318288 | None:intergenic | 20.0% |
| ! | AGCAAAGTATACACAATAAA+AGG | + | chr6_2:5317498-5317517 | Msa0906670:CDS | 25.0% |
| !!! | CTATTTCTAATGATGATGTT+AGG | + | chr6_2:5317718-5317737 | Msa0906670:CDS | 25.0% |
| ! | TGGAAATCAAATTCTAAACA+AGG | + | chr6_2:5317759-5317778 | Msa0906670:CDS | 25.0% |
| ! | ATCAAATTCTAAACAAGGTT+TGG | + | chr6_2:5317764-5317783 | Msa0906670:CDS | 25.0% |
| ! | TCAAATTCTAAACAAGGTTT+GGG | + | chr6_2:5317765-5317784 | Msa0906670:CDS | 25.0% |
| !!! | TATTGGTAATTGATTTGTGT+TGG | - | chr6_2:5318176-5318195 | None:intergenic | 25.0% |
| ! | AACTCAACATTTGATCATAT+TGG | - | chr6_2:5318193-5318212 | None:intergenic | 25.0% |
| ! | AGGAAAATCTTGATCTTTAT+GGG | - | chr6_2:5318309-5318328 | None:intergenic | 25.0% |
| ! | AAGGAAAATCTTGATCTTTA+TGG | - | chr6_2:5318310-5318329 | None:intergenic | 25.0% |
| ! | AGCAAAGTATACACAATAAA+AGG | + | chr6_2:5317498-5317517 | Msa0906670:CDS | 25.0% |
| !!! | CTATTTCTAATGATGATGTT+AGG | + | chr6_2:5317718-5317737 | Msa0906670:CDS | 25.0% |
| ! | TGGAAATCAAATTCTAAACA+AGG | + | chr6_2:5317759-5317778 | Msa0906670:CDS | 25.0% |
| ! | ATCAAATTCTAAACAAGGTT+TGG | + | chr6_2:5317764-5317783 | Msa0906670:CDS | 25.0% |
| ! | TCAAATTCTAAACAAGGTTT+GGG | + | chr6_2:5317765-5317784 | Msa0906670:CDS | 25.0% |
| !!! | TATTGGTAATTGATTTGTGT+TGG | - | chr6_2:5318176-5318195 | None:intergenic | 25.0% |
| ! | AACTCAACATTTGATCATAT+TGG | - | chr6_2:5318193-5318212 | None:intergenic | 25.0% |
| ! | AGGAAAATCTTGATCTTTAT+GGG | - | chr6_2:5318309-5318328 | None:intergenic | 25.0% |
| ! | AAGGAAAATCTTGATCTTTA+TGG | - | chr6_2:5318310-5318329 | None:intergenic | 25.0% |
| ! | AATGGAAATTCAGCTTCTTT+TGG | - | chr6_2:5317354-5317373 | None:intergenic | 30.0% |
| GATGTAGTTGAATCATTTGA+TGG | - | chr6_2:5317393-5317412 | None:intergenic | 30.0% | |
| ! | ATGTCTATCTTTTGTTCCAA+AGG | - | chr6_2:5317478-5317497 | None:intergenic | 30.0% |
| TAAAAGGACTAAGAGATAGA+AGG | + | chr6_2:5317514-5317533 | Msa0906670:CDS | 30.0% | |
| AAAAGGACTAAGAGATAGAA+GGG | + | chr6_2:5317515-5317534 | Msa0906670:CDS | 30.0% | |
| TATGATCTTCAAGATAGGTT+AGG | + | chr6_2:5317570-5317589 | Msa0906670:CDS | 30.0% | |
| ATGATCTTCAAGATAGGTTA+GGG | + | chr6_2:5317571-5317590 | Msa0906670:CDS | 30.0% | |
| TTGGTTGCTTAATATAGCTA+AGG | + | chr6_2:5317620-5317639 | Msa0906670:CDS | 30.0% | |
| GAAATAGTACTAGCAAAAGA+TGG | - | chr6_2:5317705-5317724 | None:intergenic | 30.0% | |
| AAATGTGGTGATAGACTATT+TGG | - | chr6_2:5317891-5317910 | None:intergenic | 30.0% | |
| ! | ATCATATTTGAGACATTGTC+AGG | - | chr6_2:5317918-5317937 | None:intergenic | 30.0% |
| !!! | AGCAAATCAACCTTCTTTTT+TGG | + | chr6_2:5317950-5317969 | Msa0906670:CDS | 30.0% |
| !!! | GCAAATCAACCTTCTTTTTT+GGG | + | chr6_2:5317951-5317970 | Msa0906670:CDS | 30.0% |
| TTCAACAATCCCAAAAAAGA+AGG | - | chr6_2:5317963-5317982 | None:intergenic | 30.0% | |
| !! | AAACACAATGATGATGGAAA+GGG | - | chr6_2:5318104-5318123 | None:intergenic | 30.0% |
| ! | CAATATTTTCCTTCACATGT+TGG | + | chr6_2:5318134-5318153 | Msa0906670:CDS | 30.0% |
| ! | AATGGAAATTCAGCTTCTTT+TGG | - | chr6_2:5317354-5317373 | None:intergenic | 30.0% |
| GATGTAGTTGAATCATTTGA+TGG | - | chr6_2:5317393-5317412 | None:intergenic | 30.0% | |
| ! | ATGTCTATCTTTTGTTCCAA+AGG | - | chr6_2:5317478-5317497 | None:intergenic | 30.0% |
| TAAAAGGACTAAGAGATAGA+AGG | + | chr6_2:5317514-5317533 | Msa0906670:CDS | 30.0% | |
| AAAAGGACTAAGAGATAGAA+GGG | + | chr6_2:5317515-5317534 | Msa0906670:CDS | 30.0% | |
| TATGATCTTCAAGATAGGTT+AGG | + | chr6_2:5317570-5317589 | Msa0906670:CDS | 30.0% | |
| ATGATCTTCAAGATAGGTTA+GGG | + | chr6_2:5317571-5317590 | Msa0906670:CDS | 30.0% | |
| TTGGTTGCTTAATATAGCTA+AGG | + | chr6_2:5317620-5317639 | Msa0906670:CDS | 30.0% | |
| GAAATAGTACTAGCAAAAGA+TGG | - | chr6_2:5317705-5317724 | None:intergenic | 30.0% | |
| AAATGTGGTGATAGACTATT+TGG | - | chr6_2:5317891-5317910 | None:intergenic | 30.0% | |
| ! | ATCATATTTGAGACATTGTC+AGG | - | chr6_2:5317918-5317937 | None:intergenic | 30.0% |
| !!! | AGCAAATCAACCTTCTTTTT+TGG | + | chr6_2:5317950-5317969 | Msa0906670:CDS | 30.0% |
| !!! | GCAAATCAACCTTCTTTTTT+GGG | + | chr6_2:5317951-5317970 | Msa0906670:CDS | 30.0% |
| TTCAACAATCCCAAAAAAGA+AGG | - | chr6_2:5317963-5317982 | None:intergenic | 30.0% | |
| !! | AAACACAATGATGATGGAAA+GGG | - | chr6_2:5318104-5318123 | None:intergenic | 30.0% |
| ! | CAATATTTTCCTTCACATGT+TGG | + | chr6_2:5318134-5318153 | Msa0906670:CDS | 30.0% |
| ! | GGAAGAACTTCTTGTTTCAA+TGG | - | chr6_2:5317372-5317391 | None:intergenic | 35.0% |
| TAAAAGATCCGAGAATTGTG+AGG | + | chr6_2:5317442-5317461 | Msa0906670:CDS | 35.0% | |
| AAAAGATCCGAGAATTGTGA+GGG | + | chr6_2:5317443-5317462 | Msa0906670:CDS | 35.0% | |
| ACCTCTATGATCTTCAAGAT+AGG | + | chr6_2:5317565-5317584 | Msa0906670:CDS | 35.0% | |
| ACCTATCTTGAAGATCATAG+AGG | - | chr6_2:5317569-5317588 | None:intergenic | 35.0% | |
| ! | TTTCCTTGAGGTATTTGAAG+TGG | - | chr6_2:5317666-5317685 | None:intergenic | 35.0% |
| AGCAAAAGATGGATAACCTA+AGG | - | chr6_2:5317694-5317713 | None:intergenic | 35.0% | |
| GGCAAAACAACACTTCAATT+TGG | + | chr6_2:5317739-5317758 | Msa0906670:CDS | 35.0% | |
| TTGGATGAATAGAAGTGAAG+AGG | + | chr6_2:5317812-5317831 | Msa0906670:CDS | 35.0% | |
| GAATAGAAGTGAAGAGGATA+AGG | + | chr6_2:5317818-5317837 | Msa0906670:CDS | 35.0% | |
| ACATTGTCAGGTACTAAATG+TGG | - | chr6_2:5317906-5317925 | None:intergenic | 35.0% | |
| TCAAATATGATTATCTCCCG+TGG | + | chr6_2:5317927-5317946 | Msa0906670:CDS | 35.0% | |
| TTGTTGAATACTATGCCACT+TGG | + | chr6_2:5317975-5317994 | Msa0906670:CDS | 35.0% | |
| ! | TATGCCACTTGGTTATCAAT+TGG | + | chr6_2:5317986-5318005 | Msa0906670:CDS | 35.0% |
| TGAGGAATATGACTAGATGA+AGG | - | chr6_2:5318014-5318033 | None:intergenic | 35.0% | |
| !! | CAAACACAATGATGATGGAA+AGG | - | chr6_2:5318105-5318124 | None:intergenic | 35.0% |
| GTTGACAAACACAATGATGA+TGG | - | chr6_2:5318110-5318129 | None:intergenic | 35.0% | |
| ! | GGAAGAACTTCTTGTTTCAA+TGG | - | chr6_2:5317372-5317391 | None:intergenic | 35.0% |
| TAAAAGATCCGAGAATTGTG+AGG | + | chr6_2:5317442-5317461 | Msa0906670:CDS | 35.0% | |
| AAAAGATCCGAGAATTGTGA+GGG | + | chr6_2:5317443-5317462 | Msa0906670:CDS | 35.0% | |
| ACCTCTATGATCTTCAAGAT+AGG | + | chr6_2:5317565-5317584 | Msa0906670:CDS | 35.0% | |
| ACCTATCTTGAAGATCATAG+AGG | - | chr6_2:5317569-5317588 | None:intergenic | 35.0% | |
| ! | TTTCCTTGAGGTATTTGAAG+TGG | - | chr6_2:5317666-5317685 | None:intergenic | 35.0% |
| AGCAAAAGATGGATAACCTA+AGG | - | chr6_2:5317694-5317713 | None:intergenic | 35.0% | |
| GGCAAAACAACACTTCAATT+TGG | + | chr6_2:5317739-5317758 | Msa0906670:CDS | 35.0% | |
| TTGGATGAATAGAAGTGAAG+AGG | + | chr6_2:5317812-5317831 | Msa0906670:CDS | 35.0% | |
| GAATAGAAGTGAAGAGGATA+AGG | + | chr6_2:5317818-5317837 | Msa0906670:CDS | 35.0% | |
| ACATTGTCAGGTACTAAATG+TGG | - | chr6_2:5317906-5317925 | None:intergenic | 35.0% | |
| TCAAATATGATTATCTCCCG+TGG | + | chr6_2:5317927-5317946 | Msa0906670:CDS | 35.0% | |
| TTGTTGAATACTATGCCACT+TGG | + | chr6_2:5317975-5317994 | Msa0906670:CDS | 35.0% | |
| ! | TATGCCACTTGGTTATCAAT+TGG | + | chr6_2:5317986-5318005 | Msa0906670:CDS | 35.0% |
| TGAGGAATATGACTAGATGA+AGG | - | chr6_2:5318014-5318033 | None:intergenic | 35.0% | |
| !! | CAAACACAATGATGATGGAA+AGG | - | chr6_2:5318105-5318124 | None:intergenic | 35.0% |
| GTTGACAAACACAATGATGA+TGG | - | chr6_2:5318110-5318129 | None:intergenic | 35.0% | |
| CATCATCAACAACATCGCAA+TGG | + | chr6_2:5317412-5317431 | Msa0906670:CDS | 40.0% | |
| GACTAAGAGATAGAAGGGTA+AGG | + | chr6_2:5317520-5317539 | Msa0906670:CDS | 40.0% | |
| ! | CATAGAGGTGAATTGCTGTT+TGG | - | chr6_2:5317554-5317573 | None:intergenic | 40.0% |
| AATCAACAACCTTGCTAGGT+TGG | - | chr6_2:5317602-5317621 | None:intergenic | 40.0% | |
| AACCTAGCAAGGTTGTTGAT+TGG | + | chr6_2:5317601-5317620 | Msa0906670:CDS | 40.0% | |
| AACCAATCAACAACCTTGCT+AGG | - | chr6_2:5317606-5317625 | None:intergenic | 40.0% | |
| AGAGGATAAGGAGAAGAAAG+AGG | + | chr6_2:5317830-5317849 | Msa0906670:CDS | 40.0% | |
| !! | AAGAAGGTTGATTTGCTCCA+CGG | - | chr6_2:5317947-5317966 | None:intergenic | 40.0% |
| ATCCAACTCAACAACTCATG+AGG | + | chr6_2:5318237-5318256 | Msa0906670:CDS | 40.0% | |
| TCCAACTCAACAACTCATGA+GGG | + | chr6_2:5318238-5318257 | Msa0906670:CDS | 40.0% | |
| CATCATCAACAACATCGCAA+TGG | + | chr6_2:5317412-5317431 | Msa0906670:CDS | 40.0% | |
| GACTAAGAGATAGAAGGGTA+AGG | + | chr6_2:5317520-5317539 | Msa0906670:CDS | 40.0% | |
| ! | CATAGAGGTGAATTGCTGTT+TGG | - | chr6_2:5317554-5317573 | None:intergenic | 40.0% |
| AATCAACAACCTTGCTAGGT+TGG | - | chr6_2:5317602-5317621 | None:intergenic | 40.0% | |
| AACCTAGCAAGGTTGTTGAT+TGG | + | chr6_2:5317601-5317620 | Msa0906670:CDS | 40.0% | |
| AACCAATCAACAACCTTGCT+AGG | - | chr6_2:5317606-5317625 | None:intergenic | 40.0% | |
| AGAGGATAAGGAGAAGAAAG+AGG | + | chr6_2:5317830-5317849 | Msa0906670:CDS | 40.0% | |
| !! | AAGAAGGTTGATTTGCTCCA+CGG | - | chr6_2:5317947-5317966 | None:intergenic | 40.0% |
| ATCCAACTCAACAACTCATG+AGG | + | chr6_2:5318237-5318256 | Msa0906670:CDS | 40.0% | |
| TCCAACTCAACAACTCATGA+GGG | + | chr6_2:5318238-5318257 | Msa0906670:CDS | 40.0% | |
| CTAGACACCCTCACAATTCT+CGG | - | chr6_2:5317453-5317472 | None:intergenic | 45.0% | |
| ! | CCTTGAGGTATTTGAAGTGG+TGG | - | chr6_2:5317663-5317682 | None:intergenic | 45.0% |
| CCACCACTTCAAATACCTCA+AGG | + | chr6_2:5317660-5317679 | Msa0906670:CDS | 45.0% | |
| CCTAAGGTGAAGTTTCCTTG+AGG | - | chr6_2:5317678-5317697 | None:intergenic | 45.0% | |
| CCTCAAGGAAACTTCACCTT+AGG | + | chr6_2:5317675-5317694 | Msa0906670:CDS | 45.0% | |
| !! | AGAAGGTTGATTTGCTCCAC+GGG | - | chr6_2:5317946-5317965 | None:intergenic | 45.0% |
| ! | GGCTCCAATTGATAACCAAG+TGG | - | chr6_2:5317993-5318012 | None:intergenic | 45.0% |
| ACCCTCATGAGTTGTTGAGT+TGG | - | chr6_2:5318242-5318261 | None:intergenic | 45.0% | |
| CTAGACACCCTCACAATTCT+CGG | - | chr6_2:5317453-5317472 | None:intergenic | 45.0% | |
| ! | CCTTGAGGTATTTGAAGTGG+TGG | - | chr6_2:5317663-5317682 | None:intergenic | 45.0% |
| CCACCACTTCAAATACCTCA+AGG | + | chr6_2:5317660-5317679 | Msa0906670:CDS | 45.0% | |
| CCTAAGGTGAAGTTTCCTTG+AGG | - | chr6_2:5317678-5317697 | None:intergenic | 45.0% | |
| CCTCAAGGAAACTTCACCTT+AGG | + | chr6_2:5317675-5317694 | Msa0906670:CDS | 45.0% | |
| !! | AGAAGGTTGATTTGCTCCAC+GGG | - | chr6_2:5317946-5317965 | None:intergenic | 45.0% |
| ! | GGCTCCAATTGATAACCAAG+TGG | - | chr6_2:5317993-5318012 | None:intergenic | 45.0% |
| ACCCTCATGAGTTGTTGAGT+TGG | - | chr6_2:5318242-5318261 | None:intergenic | 45.0% | |
| AGGGCTAAACCAACCTAGCA+AGG | + | chr6_2:5317590-5317609 | Msa0906670:CDS | 50.0% | |
| TGCACTGCTCCAACATGTGA+AGG | - | chr6_2:5318146-5318165 | None:intergenic | 50.0% | |
| ACATGTTGGAGCAGTGCAGA+TGG | + | chr6_2:5318148-5318167 | Msa0906670:CDS | 50.0% | |
| AGGGCTAAACCAACCTAGCA+AGG | + | chr6_2:5317590-5317609 | Msa0906670:CDS | 50.0% | |
| TGCACTGCTCCAACATGTGA+AGG | - | chr6_2:5318146-5318165 | None:intergenic | 50.0% | |
| ACATGTTGGAGCAGTGCAGA+TGG | + | chr6_2:5318148-5318167 | Msa0906670:CDS | 50.0% | |
| !! | GTGAGGGTGTCTAGAGCCTT+TGG | + | chr6_2:5317459-5317478 | Msa0906670:CDS | 55.0% |
| !! | GTGAGGGTGTCTAGAGCCTT+TGG | + | chr6_2:5317459-5317478 | Msa0906670:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 5317339 | 5318337 | 5317339 | ID=Msa0906670;Name=Msa0906670 |
| chr6_2 | mRNA | 5317339 | 5318337 | 5317339 | ID=Msa0906670-mRNA-1;Parent=Msa0906670;Name=Msa0906670-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|332 |
| chr6_2 | exon | 5317339 | 5318337 | 5317339 | ID=Msa0906670-mRNA-1:exon:1592;Parent=Msa0906670-mRNA-1 |
| chr6_2 | CDS | 5317339 | 5318337 | 5317339 | ID=Msa0906670-mRNA-1:cds;Parent=Msa0906670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
