AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0256430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0256430 MtrunA17_Chr2g0318131 99.515 206 1 0 19 224 162 367 3.50e-154 432
Msa0256430 MtrunA17_Chr2g0324001 76.471 204 48 0 19 222 108 311 3.08e-123 352
Msa0256430 MtrunA17_Chr6g0465041 23.810 168 128 0 37 204 56 223 1.19e-16 75.9
Msa0256430 MtrunA17_Chr1g0187331 29.032 186 120 6 34 216 9 185 9.64e-16 72.4
Msa0256430 MtrunA17_Chr1g0207521 27.273 176 125 2 37 210 85 259 3.00e-15 72.4
Msa0256430 MtrunA17_Chr8g0390511 23.039 204 131 2 31 208 5 208 4.25e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0256430 AT1G52870.2 83.333 198 33 0 19 216 155 352 2.82e-127 364
Msa0256430 AT4G03410.1 76.329 207 48 1 18 224 112 317 3.19e-123 352
Msa0256430 AT4G03410.2 76.699 206 47 1 18 223 112 316 4.57e-123 353
Msa0256430 AT1G52870.1 78.710 155 29 1 19 173 155 305 6.59e-92 272
Msa0256430 AT5G43140.1 24.713 174 130 1 37 210 82 254 8.11e-15 71.6
Msa0256430 AT4G33905.1 26.111 180 128 2 37 216 86 260 9.28e-15 71.6
Msa0256430 AT2G14860.1 26.901 171 124 1 37 207 77 246 3.00e-14 70.1
Msa0256430 AT4G14305.1 25.444 169 120 5 34 199 9 174 2.32e-11 60.8
Msa0256430 AT5G19750.1 22.543 173 132 2 37 209 118 288 3.14e-11 62.0

Find 66 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATATGATAGAGCTTATT+TGG 0.132143 2_2:-51197049 Msa0256430:CDS
CTAACATACATGAATTTCTT+AGG 0.138333 2_2:+51196045 None:intergenic
CGGTGCGCTGGACCTTAATT+TGG 0.229107 2_2:-51196133 Msa0256430:three_prime_UTR
ATGATGACGATGAAGAAATT+TGG 0.251534 2_2:+51198837 Msa0256440:CDS
AGGTCAAAATTGTGTATATA+TGG 0.272639 2_2:-51195888 Msa0256430:three_prime_UTR
CGCTGGACCTTAATTTGGTT+TGG 0.284224 2_2:-51196128 Msa0256430:three_prime_UTR
GATAGAAAAGATTATTATAA+TGG 0.338922 2_2:-51196167 Msa0256430:three_prime_UTR
CAGTTGAGCAAAGACTTCTT+TGG 0.344032 2_2:-51197073 Msa0256430:CDS
TCTATGTCCAAACCAAATTA+AGG 0.351514 2_2:+51196121 None:intergenic
CTTGTTGGATTTGCTCTACA+TGG 0.353651 2_2:-51197585 Msa0256430:CDS
AATTCATTGAAAATATTGAT+TGG 0.360409 2_2:+51197307 None:intergenic
TAGGATTCATTCTGTTAAAC+AGG 0.364327 2_2:-51195908 Msa0256430:three_prime_UTR
ATAAACTTACGTTGAAAGTA+TGG 0.377879 2_2:+51197022 None:intergenic
AAACTGCATGGTCGGCAGTT+TGG 0.384594 2_2:-51197375 Msa0256430:CDS
CTAAGAAATTCATGTATGTT+AGG 0.387434 2_2:-51196044 Msa0256430:three_prime_UTR
ATTAAATGACGCACCATGTA+TGG 0.391207 2_2:-51198869 None:intergenic
ACACAACTGGTTAGCTTATG+AGG 0.392465 2_2:-51197848 Msa0256430:CDS
TGATCGAAGGCAACTTTGAC+TGG 0.394081 2_2:+51197397 None:intergenic
CAAAGAAGTCTTTGCTCAAC+TGG 0.399250 2_2:+51197074 None:intergenic
TATTACAATGCAGTCGAGAT+AGG 0.404494 2_2:-51195927 Msa0256430:three_prime_UTR
TTGTTTATTCTGTAGGAGAC+TGG 0.418497 2_2:-51197777 Msa0256430:CDS
AGATATGATAGAGCTTATTT+GGG 0.418869 2_2:-51197048 Msa0256430:CDS
TATGGTCTACCTCACAAAAC+TGG 0.429644 2_2:+51197541 None:intergenic
TGAACAATTACATTGTGTAA+TGG 0.437531 2_2:+51195998 None:intergenic
AGTTGAGCAAAGACTTCTTT+GGG 0.441026 2_2:-51197072 Msa0256430:CDS
TGATGACGATGAAGAAATTT+GGG 0.441950 2_2:+51198838 Msa0256440:CDS
CGTGCACGGATGTTCAGATC+AGG 0.450132 2_2:-51197609 Msa0256430:CDS
TTGCCAAGATGGTGATTAGC+GGG 0.450889 2_2:-51197801 Msa0256430:CDS
TTTGCTCATCTAATAACTTA+CGG 0.455935 2_2:-51197104 Msa0256430:CDS
TAACATACATGAATTTCTTA+GGG 0.463410 2_2:+51196046 None:intergenic
AGCATTTACTATACAGTTGT+GGG 0.481625 2_2:-51197349 Msa0256430:CDS
GATATGCACCTCTACACAAC+TGG 0.490397 2_2:-51197861 Msa0256430:CDS
TAAGTTATTAGATGAGCAAA+TGG 0.497633 2_2:+51197107 None:intergenic
GAATGAAGTTCACGGTGCGC+TGG 0.500228 2_2:-51196145 Msa0256430:three_prime_UTR
ACTACCCACCATCCTTTGTA+AGG 0.501278 2_2:+51197421 None:intergenic
AGCTATTTCCTTACAAAGGA+TGG 0.507459 2_2:-51197429 Msa0256430:CDS
TGATTATTGCAGTGCTTCGA+AGG 0.509560 2_2:-51197654 Msa0256430:intron
ATGTTCAGATCAGGGCTTGT+TGG 0.511574 2_2:-51197600 Msa0256430:CDS
AACCCCGCTAATCACCATCT+TGG 0.520776 2_2:+51197798 None:intergenic
AGCGGGGTTGTTTATTCTGT+AGG 0.524576 2_2:-51197784 Msa0256430:CDS
CAGCATTTACTATACAGTTG+TGG 0.531133 2_2:-51197350 Msa0256430:CDS
TTACATTGTGTAATGGCTAC+AGG 0.540618 2_2:+51196005 None:intergenic
TTATAATGGAATGAAGTTCA+CGG 0.545579 2_2:-51196153 Msa0256430:three_prime_UTR
GGAAGCTCTCAAGACAAATC+CGG 0.548802 2_2:-51197827 Msa0256430:CDS
CTTCGATCAAACTGCATGGT+CGG 0.558882 2_2:-51197383 Msa0256430:CDS
GCCACATACCTCAGATGTAG+TGG 0.573931 2_2:+51196316 None:intergenic
TACAGGCAGGATGGAAGTTG+TGG 0.575586 2_2:-51197130 Msa0256430:intron
GTCATCATCAACATCACGTA+AGG 0.575919 2_2:-51198822 Msa0256430:intron
CAGGAGCTATTTCCTTACAA+AGG 0.576904 2_2:-51197433 Msa0256430:CDS
TATTTCCTTACAAAGGATGG+TGG 0.578819 2_2:-51197426 Msa0256430:CDS
AGGTTCTCTTACAGTCAACA+TGG 0.583530 2_2:+51197267 None:intergenic
TTTGCCAAGATGGTGATTAG+CGG 0.591010 2_2:-51197802 Msa0256430:CDS
ACTTTCTTATACAGGCAGGA+TGG 0.595260 2_2:-51197139 Msa0256430:intron
CGACCATGCAGTTTGATCGA+AGG 0.598693 2_2:+51197384 None:intergenic
TTGGGTCGTAGCTCCATACA+TGG 0.600038 2_2:+51198856 Msa0256440:CDS
TGTAGGAGACTGGATTGCAC+AGG 0.610678 2_2:-51197767 Msa0256430:intron
ATTTCCTTACAAAGGATGGT+GGG 0.611721 2_2:-51197425 Msa0256430:CDS
TAAGCTAACCAGTTGTGTAG+AGG 0.623564 2_2:+51197853 None:intergenic
AGCGAAATCCACTACATCTG+AGG 0.636729 2_2:-51196324 Msa0256430:intron
GGTTCTCTTACAGTCAACAT+GGG 0.640571 2_2:+51197268 None:intergenic
GTGCACGGATGTTCAGATCA+GGG 0.649536 2_2:-51197608 Msa0256430:CDS
TTGCCTTCGATCAAACTGCA+TGG 0.649875 2_2:-51197387 Msa0256430:CDS
TGCCAAGATGGTGATTAGCG+GGG 0.667655 2_2:-51197800 Msa0256430:CDS
GCATTTACTATACAGTTGTG+GGG 0.671450 2_2:-51197348 Msa0256430:CDS
TGATTGGAGAATCAAAACGC+AGG 0.680696 2_2:+51197323 None:intergenic
GTTCTCTTACAGTCAACATG+GGG 0.723534 2_2:+51197269 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACATTACATATTTTGTT+CGG - chr2_2:51196130-51196149 Msa0256430:three_prime_UTR 15.0%
!! AATTCATTGAAAATATTGAT+TGG + chr2_2:51197421-51197440 None:intergenic 15.0%
!!! GTTAAAAAGCATTTATATTA+TGG - chr2_2:51198469-51198488 Msa0256430:intron 15.0%
!! GATAGAAAAGATTATTATAA+TGG - chr2_2:51198558-51198577 Msa0256430:intron 15.0%
!!! AAACATTACATATTTTGTTC+GGG - chr2_2:51196131-51196150 Msa0256430:three_prime_UTR 20.0%
!!! GATTTCAATTTTAAAAACCT+TGG + chr2_2:51196271-51196290 None:intergenic 20.0%
!! ATAACATGAAATTCCATTAT+AGG - chr2_2:51196319-51196338 Msa0256430:intron 20.0%
!! TATTAGTTATACTTCTTATG+TGG + chr2_2:51196510-51196529 None:intergenic 20.0%
!!! CAACTTTAAATTAGCTTATA+AGG + chr2_2:51196675-51196694 None:intergenic 20.0%
!!! CTTATAAGCTAATTTAAAGT+TGG - chr2_2:51196673-51196692 Msa0256430:intron 20.0%
!!! CAATATTTTCAATGAATTGA+AGG - chr2_2:51197423-51197442 Msa0256430:CDS 20.0%
!! ATGATAAACACTTATCTATA+TGG - chr2_2:51197849-51197868 Msa0256430:CDS 20.0%
!!! AATCTTTTCATATATTTACC+AGG - chr2_2:51198515-51198534 Msa0256430:intron 20.0%
!! TAACATACATGAATTTCTTA+GGG + chr2_2:51198682-51198701 Msa0256440:CDS 20.0%
!! AACATTACATATTTTGTTCG+GGG - chr2_2:51196132-51196151 Msa0256430:three_prime_UTR 25.0%
! ATCCAGAAAAAAATTCTTCA+TGG - chr2_2:51196157-51196176 Msa0256430:three_prime_UTR 25.0%
! TGATAAAATACTCTACATGA+TGG - chr2_2:51196294-51196313 Msa0256430:intron 25.0%
! TTCCATTATAGGACTTAAAA+AGG - chr2_2:51196330-51196349 Msa0256430:CDS 25.0%
!!! TTCCTTTTTAAGTCCTATAA+TGG + chr2_2:51196335-51196354 None:intergenic 25.0%
! TGAAAAGGAAACAATTGAAT+GGG - chr2_2:51196431-51196450 Msa0256430:intron 25.0%
!! CACGTTTAAATTAGCTTATT+TGG + chr2_2:51196718-51196737 None:intergenic 25.0%
! TCAAGATAATCAAATTTGAC+TGG + chr2_2:51196774-51196793 None:intergenic 25.0%
!! ATTACCATTTATTTGTTGCA+TGG - chr2_2:51197488-51197507 Msa0256430:intron 25.0%
! TTCCTTAAACTTTCTTATAC+AGG - chr2_2:51197578-51197597 Msa0256430:CDS 25.0%
! TAAGTTATTAGATGAGCAAA+TGG + chr2_2:51197621-51197640 None:intergenic 25.0%
! TTTGCTCATCTAATAACTTA+CGG - chr2_2:51197621-51197640 Msa0256430:CDS 25.0%
! TAGATATGATAGAGCTTATT+TGG - chr2_2:51197676-51197695 Msa0256430:intron 25.0%
! AGATATGATAGAGCTTATTT+GGG - chr2_2:51197677-51197696 Msa0256430:intron 25.0%
! ATAAACTTACGTTGAAAGTA+TGG + chr2_2:51197706-51197725 None:intergenic 25.0%
! AACACTTAATCAATTAGTGT+AGG + chr2_2:51197826-51197845 None:intergenic 25.0%
!! TTATAATGGAATGAAGTTCA+CGG - chr2_2:51198572-51198591 Msa0256430:intron 25.0%
! CTAACATACATGAATTTCTT+AGG + chr2_2:51198683-51198702 Msa0256440:CDS 25.0%
! CTAAGAAATTCATGTATGTT+AGG - chr2_2:51198681-51198700 Msa0256430:intron 25.0%
! TGAACAATTACATTGTGTAA+TGG + chr2_2:51198730-51198749 Msa0256440:CDS 25.0%
! AGGTCAAAATTGTGTATATA+TGG - chr2_2:51198837-51198856 Msa0256430:CDS 25.0%
! TGATGACGATGAAGAAATTT+GGG + chr2_2:51195890-51195909 None:intergenic 30.0%
! ATGATGACGATGAAGAAATT+TGG + chr2_2:51195891-51195910 None:intergenic 30.0%
!!! GATTTTTAGGTGATCTTTGA+AGG - chr2_2:51195941-51195960 Msa0256430:three_prime_UTR 30.0%
! AGGTGAAGTTTTGCAAATTT+TGG - chr2_2:51195961-51195980 Msa0256430:three_prime_UTR 30.0%
! GGTGAAGTTTTGCAAATTTT+GGG - chr2_2:51195962-51195981 Msa0256430:three_prime_UTR 30.0%
AACACTATTAAATCTCACGA+CGG - chr2_2:51196014-51196033 Msa0256430:three_prime_UTR 30.0%
TCATTGTGGAAATCATATCA+TGG + chr2_2:51196053-51196072 None:intergenic 30.0%
TATGATTTCCACAATGAGAT+CGG - chr2_2:51196056-51196075 Msa0256430:three_prime_UTR 30.0%
!!! CTCCATGAAGAATTTTTTTC+TGG + chr2_2:51196162-51196181 None:intergenic 30.0%
AATATAGAGAGGTGAGATTA+CGG - chr2_2:51196212-51196231 Msa0256430:intron 30.0%
!! CATGTAGAGTATTTTATCAG+AGG + chr2_2:51196293-51196312 None:intergenic 30.0%
! CATTCAATTGTTTCCTTTTC+AGG + chr2_2:51196432-51196451 None:intergenic 30.0%
CTGAAAAGGAAACAATTGAA+TGG - chr2_2:51196430-51196449 Msa0256430:intron 30.0%
GAAAAGGAAACAATTGAATG+GGG - chr2_2:51196432-51196451 Msa0256430:intron 30.0%
CAAATTTGACTGGATATACA+GGG + chr2_2:51196764-51196783 None:intergenic 30.0%
TCAAATTTGACTGGATATAC+AGG + chr2_2:51196765-51196784 None:intergenic 30.0%
! TGAATTTTTCCTTATCTGCT+AGG - chr2_2:51196791-51196810 Msa0256430:intron 30.0%
!! TTACTATTACCAGTTTTGTG+AGG - chr2_2:51197175-51197194 Msa0256430:intron 30.0%
GGAAAAGAACATTGTTCATA+TGG + chr2_2:51197205-51197224 None:intergenic 30.0%
ATTCAAGAACAATGCAAGAA+AGG + chr2_2:51197226-51197245 None:intergenic 30.0%
TTCTTGAATTGTCTGACTTA+TGG - chr2_2:51197237-51197256 Msa0256430:intron 30.0%
ATGGAGATATGCTAATTAAG+TGG - chr2_2:51197256-51197275 Msa0256430:intron 30.0%
AGCATTTACTATACAGTTGT+GGG - chr2_2:51197376-51197395 Msa0256430:CDS 30.0%
AATAAATGGTAATAGCCAGA+AGG + chr2_2:51197481-51197500 None:intergenic 30.0%
GTTTCCATGCAACAAATAAA+TGG + chr2_2:51197495-51197514 None:intergenic 30.0%
TGCCTGTATAAGAAAGTTTA+AGG + chr2_2:51197583-51197602 None:intergenic 30.0%
TTAAACTTTCTTATACAGGC+AGG - chr2_2:51197582-51197601 Msa0256430:CDS 30.0%
ACTTTCAACGTAAGTTTATC+TGG - chr2_2:51197707-51197726 Msa0256430:intron 30.0%
ACTATACAATTTCTCCTAGA+TGG + chr2_2:51197761-51197780 None:intergenic 30.0%
TCATACTCAAAGATAGAATG+TGG - chr2_2:51197877-51197896 Msa0256430:CDS 30.0%
! ACTTGTGTTTTGTGATTGTT+TGG + chr2_2:51198017-51198036 None:intergenic 30.0%
! AAAGGAGCATACAGTTTATT+TGG + chr2_2:51198288-51198307 None:intergenic 30.0%
! CAATGGATATTTGCTAAGTT+TGG - chr2_2:51198447-51198466 Msa0256430:intron 30.0%
TCTATGTCCAAACCAAATTA+AGG + chr2_2:51198607-51198626 None:intergenic 30.0%
TAGGATTCATTCTGTTAAAC+AGG - chr2_2:51198817-51198836 Msa0256430:intron 30.0%
AACATCACGTAAGGTAAGTA+GGG - chr2_2:51195912-51195931 Msa0256430:three_prime_UTR 35.0%
ACACTATTAAATCTCACGAC+GGG - chr2_2:51196015-51196034 Msa0256430:three_prime_UTR 35.0%
ATGATTTCCACAATGAGATC+GGG - chr2_2:51196057-51196076 Msa0256430:three_prime_UTR 35.0%
TTCATGGAGAGAAATGAAAG+AGG - chr2_2:51196173-51196192 Msa0256430:three_prime_UTR 35.0%
GAAACTGACAGAATATAGAG+AGG - chr2_2:51196201-51196220 Msa0256430:intron 35.0%
!!! TTTTCAGGTATAAGCGGTTT+TGG + chr2_2:51196417-51196436 None:intergenic 35.0%
AAAACCGCTTATACCTGAAA+AGG - chr2_2:51196416-51196435 Msa0256430:intron 35.0%
!!! GTTTCCTTTTCAGGTATAAG+CGG + chr2_2:51196423-51196442 None:intergenic 35.0%
! CTATGTTTTATCCCGACTTT+GGG + chr2_2:51196483-51196502 None:intergenic 35.0%
! ACTATGTTTTATCCCGACTT+TGG + chr2_2:51196484-51196503 None:intergenic 35.0%
GGCTAATCTAAATTAGCAAC+TGG + chr2_2:51196743-51196762 None:intergenic 35.0%
AACACAAATCCTAGCAGATA+AGG + chr2_2:51196803-51196822 None:intergenic 35.0%
TTGTTTATTCTGTAGGAGAC+TGG - chr2_2:51196948-51196967 Msa0256430:intron 35.0%
TTTCATATACAGCTGAGTCT+CGG - chr2_2:51197000-51197019 Msa0256430:intron 35.0%
! CAATCTTTTATCATGCACTG+TGG - chr2_2:51197036-51197055 Msa0256430:CDS 35.0%
!!! TTTTTGAGTTTGATCGTGCA+CGG - chr2_2:51197102-51197121 Msa0256430:CDS 35.0%
! AGCTATTTCCTTACAAAGGA+TGG - chr2_2:51197296-51197315 Msa0256430:CDS 35.0%
TATTTCCTTACAAAGGATGG+TGG - chr2_2:51197299-51197318 Msa0256430:CDS 35.0%
ATTTCCTTACAAAGGATGGT+GGG - chr2_2:51197300-51197319 Msa0256430:CDS 35.0%
CAGCATTTACTATACAGTTG+TGG - chr2_2:51197375-51197394 Msa0256430:CDS 35.0%
GCATTTACTATACAGTTGTG+GGG - chr2_2:51197377-51197396 Msa0256430:CDS 35.0%
AGTTGAGCAAAGACTTCTTT+GGG - chr2_2:51197653-51197672 Msa0256430:intron 35.0%
! CTGCATAGAATTTTCCATCT+AGG - chr2_2:51197744-51197763 Msa0256430:intron 35.0%
ATGTGTGAAAATGCACAGTA+TGG - chr2_2:51197794-51197813 Msa0256430:CDS 35.0%
AGCACTTGATCAATTAGTGT+AGG + chr2_2:51198060-51198079 None:intergenic 35.0%
ACTTGTGTCTTGTAACTGTT+TGG + chr2_2:51198251-51198270 None:intergenic 35.0%
! ATATCTCTTCTTTTCACTCC+TGG + chr2_2:51198536-51198555 None:intergenic 35.0%
TTACATTGTGTAATGGCTAC+AGG + chr2_2:51198723-51198742 Msa0256440:CDS 35.0%
TATTACAATGCAGTCGAGAT+AGG - chr2_2:51198798-51198817 Msa0256430:intron 35.0%
GTCATCATCAACATCACGTA+AGG - chr2_2:51195903-51195922 Msa0256430:three_prime_UTR 40.0%
CAACATCACGTAAGGTAAGT+AGG - chr2_2:51195911-51195930 Msa0256430:three_prime_UTR 40.0%
! AGTAGGGTGTGTGGATTTTT+AGG - chr2_2:51195928-51195947 Msa0256430:three_prime_UTR 40.0%
AATGAGATCGGGAAGAAGAA+CGG - chr2_2:51196068-51196087 Msa0256430:three_prime_UTR 40.0%
! TTTTGCTGAAGCTTCTCGTT+AGG + chr2_2:51196114-51196133 None:intergenic 40.0%
GAGAGAAATGAAAGAGGAAG+TGG - chr2_2:51196179-51196198 Msa0256430:three_prime_UTR 40.0%
AGAGGTGAGATTACGGAATT+AGG - chr2_2:51196219-51196238 Msa0256430:intron 40.0%
GAGGTGAGATTACGGAATTA+GGG - chr2_2:51196220-51196239 Msa0256430:intron 40.0%
CTGCTAGGATTTGTGTTTCT+TGG - chr2_2:51196806-51196825 Msa0256430:intron 40.0%
!! TGTGTTTCTTGGTGCTATGT+AGG - chr2_2:51196817-51196836 Msa0256430:intron 40.0%
!! GTGTTTCTTGGTGCTATGTA+GGG - chr2_2:51196818-51196837 Msa0256430:intron 40.0%
TAAGCTAACCAGTTGTGTAG+AGG + chr2_2:51196875-51196894 None:intergenic 40.0%
!! ACACAACTGGTTAGCTTATG+AGG - chr2_2:51196877-51196896 Msa0256430:intron 40.0%
! AAATCCGGTTTTTGCCAAGA+TGG - chr2_2:51196913-51196932 Msa0256430:intron 40.0%
ATCACCATCTTGGCAAAAAC+CGG + chr2_2:51196920-51196939 None:intergenic 40.0%
TTTGCCAAGATGGTGATTAG+CGG - chr2_2:51196923-51196942 Msa0256430:intron 40.0%
!! TTCGAAGCACTGCAATAATC+AGG + chr2_2:51197072-51197091 None:intergenic 40.0%
TGATTATTGCAGTGCTTCGA+AGG - chr2_2:51197071-51197090 Msa0256430:CDS 40.0%
GCACGATCAAACTCAAAAAG+AGG + chr2_2:51197101-51197120 None:intergenic 40.0%
! CTTGTTGGATTTGCTCTACA+TGG - chr2_2:51197140-51197159 Msa0256430:intron 40.0%
TATGGTCTACCTCACAAAAC+TGG + chr2_2:51197187-51197206 None:intergenic 40.0%
ATAGCTCCTGGATAAATGAG+AGG + chr2_2:51197282-51197301 None:intergenic 40.0%
CTTTGTAAGGAAATAGCTCC+TGG + chr2_2:51197294-51197313 None:intergenic 40.0%
! CAGGAGCTATTTCCTTACAA+AGG - chr2_2:51197292-51197311 Msa0256430:CDS 40.0%
TGATTGGAGAATCAAAACGC+AGG + chr2_2:51197405-51197424 None:intergenic 40.0%
GTTCTCTTACAGTCAACATG+GGG + chr2_2:51197459-51197478 None:intergenic 40.0%
GGTTCTCTTACAGTCAACAT+GGG + chr2_2:51197460-51197479 None:intergenic 40.0%
AGGTTCTCTTACAGTCAACA+TGG + chr2_2:51197461-51197480 None:intergenic 40.0%
TTGACTGTAAGAGAACCTTC+TGG - chr2_2:51197463-51197482 Msa0256430:intron 40.0%
!! ATTCTTTTTCTGAGAGCCAG+TGG - chr2_2:51197519-51197538 Msa0256430:intron 40.0%
CAAGATAATGTTACCACCAC+TGG + chr2_2:51197538-51197557 None:intergenic 40.0%
ACTTTCTTATACAGGCAGGA+TGG - chr2_2:51197586-51197605 Msa0256430:CDS 40.0%
CAAAGAAGTCTTTGCTCAAC+TGG + chr2_2:51197654-51197673 None:intergenic 40.0%
CAGTTGAGCAAAGACTTCTT+TGG - chr2_2:51197652-51197671 Msa0256430:intron 40.0%
TCCTTTGTATATCTCTGCAG+TGG - chr2_2:51198302-51198321 Msa0256430:intron 40.0%
ACCACTGCAGAGATATACAA+AGG + chr2_2:51198306-51198325 None:intergenic 40.0%
!!! GCTTCTGGTTTTGTGATCAA+TGG - chr2_2:51198430-51198449 Msa0256430:intron 40.0%
! AATCTCACGACGGGTTTCAA+CGG - chr2_2:51196024-51196043 Msa0256430:three_prime_UTR 45.0%
TCTTCTTCCCGATCTCATTG+TGG + chr2_2:51196067-51196086 None:intergenic 45.0%
ATGAGATCGGGAAGAAGAAC+GGG - chr2_2:51196069-51196088 Msa0256430:three_prime_UTR 45.0%
! GTGAGAAAGTGTAACGACCA+AGG - chr2_2:51196251-51196270 Msa0256430:intron 45.0%
GGATCACAGTGTCAAGTCTT+AGG + chr2_2:51196381-51196400 None:intergenic 45.0%
TCTCAGTGAGTTCCCAAAGT+CGG - chr2_2:51196468-51196487 Msa0256430:intron 45.0%
!! TTCTTGGTGCTATGTAGGGA+TGG - chr2_2:51196822-51196841 Msa0256430:intron 45.0%
GATATGCACCTCTACACAAC+TGG - chr2_2:51196864-51196883 Msa0256430:intron 45.0%
GGAAGCTCTCAAGACAAATC+CGG - chr2_2:51196898-51196917 Msa0256430:intron 45.0%
TTGCCAAGATGGTGATTAGC+GGG - chr2_2:51196924-51196943 Msa0256430:intron 45.0%
AGCGGGGTTGTTTATTCTGT+AGG - chr2_2:51196941-51196960 Msa0256430:intron 45.0%
ATGTTCAGATCAGGGCTTGT+TGG - chr2_2:51197125-51197144 Msa0256430:CDS 45.0%
AAGTGGCCTCTCATTTATCC+AGG - chr2_2:51197273-51197292 Msa0256430:intron 45.0%
ACTACCCACCATCCTTTGTA+AGG + chr2_2:51197307-51197326 None:intergenic 45.0%
TGATCGAAGGCAACTTTGAC+TGG + chr2_2:51197331-51197350 None:intergenic 45.0%
TTGCCTTCGATCAAACTGCA+TGG - chr2_2:51197338-51197357 Msa0256430:CDS 45.0%
CTTCGATCAAACTGCATGGT+CGG - chr2_2:51197342-51197361 Msa0256430:CDS 45.0%
!! TCTCTGCAGTGGTTCTAACA+TGG - chr2_2:51198313-51198332 Msa0256430:intron 45.0%
AGCGAAATCCACTACATCTG+AGG - chr2_2:51198401-51198420 Msa0256430:intron 45.0%
! TCCACTACATCTGAGGTATG+TGG - chr2_2:51198408-51198427 Msa0256430:intron 45.0%
! CGCTGGACCTTAATTTGGTT+TGG - chr2_2:51198597-51198616 Msa0256430:intron 45.0%
!! TTTAAAAAAAAAAAAAAAAC+AGG + chr2_2:51198497-51198516 None:intergenic 5.0%
CGTAAGGTAAGTAGGGTGTG+TGG - chr2_2:51195919-51195938 Msa0256430:three_prime_UTR 50.0%
GACACTGTGATCCAGCTCAA+TGG - chr2_2:51196388-51196407 Msa0256430:intron 50.0%
!!! GGTTTTGGAGTCCATTGAGC+TGG + chr2_2:51196402-51196421 None:intergenic 50.0%
CTCAGTGAGTTCCCAAAGTC+GGG - chr2_2:51196469-51196488 Msa0256430:intron 50.0%
TGCCAAGATGGTGATTAGCG+GGG - chr2_2:51196925-51196944 Msa0256430:intron 50.0%
AACCCCGCTAATCACCATCT+TGG + chr2_2:51196930-51196949 None:intergenic 50.0%
TGTAGGAGACTGGATTGCAC+AGG - chr2_2:51196958-51196977 Msa0256430:intron 50.0%
GTGCACGGATGTTCAGATCA+GGG - chr2_2:51197117-51197136 Msa0256430:CDS 50.0%
CGACCATGCAGTTTGATCGA+AGG + chr2_2:51197344-51197363 None:intergenic 50.0%
AAACTGCATGGTCGGCAGTT+TGG - chr2_2:51197350-51197369 Msa0256430:CDS 50.0%
!! CTTTTTCTGAGAGCCAGTGG+TGG - chr2_2:51197522-51197541 Msa0256430:intron 50.0%
TACAGGCAGGATGGAAGTTG+TGG - chr2_2:51197595-51197614 Msa0256430:CDS 50.0%
GCCACATACCTCAGATGTAG+TGG + chr2_2:51198412-51198431 None:intergenic 50.0%
! CATCTGAGGTATGTGGCTTC+TGG - chr2_2:51198415-51198434 Msa0256430:intron 50.0%
CGTGCACGGATGTTCAGATC+AGG - chr2_2:51197116-51197135 Msa0256430:CDS 55.0%
GAATGAAGTTCACGGTGCGC+TGG - chr2_2:51198580-51198599 Msa0256430:intron 55.0%
CGGTGCGCTGGACCTTAATT+TGG - chr2_2:51198592-51198611 Msa0256430:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 51195871 51198876 51195871 ID=Msa0256430;Name=Msa0256430
chr2_2 mRNA 51195871 51198876 51195871 ID=Msa0256430-mRNA-1;Parent=Msa0256430;Name=Msa0256430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.66|0.71|0.85|0.83|0.85|7|334|224
chr2_2 exon 51195871 51196210 51195871 ID=Msa0256430-mRNA-1:exon:15471;Parent=Msa0256430-mRNA-1
chr2_2 exon 51196325 51196394 51196325 ID=Msa0256430-mRNA-1:exon:15470;Parent=Msa0256430-mRNA-1
chr2_2 exon 51197032 51197147 51197032 ID=Msa0256430-mRNA-1:exon:15469;Parent=Msa0256430-mRNA-1
chr2_2 exon 51197279 51197452 51197279 ID=Msa0256430-mRNA-1:exon:15468;Parent=Msa0256430-mRNA-1
chr2_2 exon 51197551 51197664 51197551 ID=Msa0256430-mRNA-1:exon:15467;Parent=Msa0256430-mRNA-1
chr2_2 exon 51197768 51197908 51197768 ID=Msa0256430-mRNA-1:exon:15466;Parent=Msa0256430-mRNA-1
chr2_2 exon 51198823 51198876 51198823 ID=Msa0256430-mRNA-1:exon:15465;Parent=Msa0256430-mRNA-1
chr2_2 CDS 51198823 51198876 51198823 ID=Msa0256430-mRNA-1:cds;Parent=Msa0256430-mRNA-1
chr2_2 CDS 51197768 51197908 51197768 ID=Msa0256430-mRNA-1:cds;Parent=Msa0256430-mRNA-1
chr2_2 CDS 51197551 51197664 51197551 ID=Msa0256430-mRNA-1:cds;Parent=Msa0256430-mRNA-1
chr2_2 CDS 51197279 51197452 51197279 ID=Msa0256430-mRNA-1:cds;Parent=Msa0256430-mRNA-1
chr2_2 CDS 51197032 51197147 51197032 ID=Msa0256430-mRNA-1:cds;Parent=Msa0256430-mRNA-1
chr2_2 CDS 51196325 51196394 51196325 ID=Msa0256430-mRNA-1:cds;Parent=Msa0256430-mRNA-1
chr2_2 CDS 51196205 51196210 51196205 ID=Msa0256430-mRNA-1:cds;Parent=Msa0256430-mRNA-1
chr2_2 three_prime_UTR 51195871 51196204 51195871 ID=Msa0256430-mRNA-1:three_prime_utr;Parent=Msa0256430-mRNA-1
Gene Sequence

>Msa0256430

ATGTATGGAGCTACGACCCAAATTTCTTCATCGTCATCATCAACATCACGTAAGGGATGGACAATCTATGAGATAGTAAGATATGCACCTCTACACAACTGGTTAGCTTATGAGGAAGCTCTCAAGACAAATCCGGTTTTTGCCAAGATGGTGATTAGCGGGGTTGTTTATTCTGTAGGAGACTGGATTGCACAGTGCTTCGAAGGAAAGCCTCTTTTTGAGTTTGATCGTGCACGGATGTTCAGATCAGGGCTTGTTGGATTTGCTCTACATGGCTCTCTTTCTCATTACTATTACCAGTTTTGTGAGGAGCTATTTCCTTACAAAGGATGGTGGGTAGTTCCAGTCAAAGTTGCCTTCGATCAAACTGCATGGTCGGCAGTTTGGAACAGCATTTACTATACAGTTGTGGGGATCCTGCGTTTTGATTCTCCAATCAATATTTTCAATGAATTGAAGGCAACATTTTTCCCCATGTTGACTGCAGGATGGAAGTTGTGGCCATTTGCTCATCTAATAACTTACGGTGTAATACCAGTTGAGCAAAGACTTCTTTGGGTAGATATGATAGAGCTTATTTGGGTGACCATACTTTCAACATATTCAAATGAAAAATCAGAAGCAAGAAGCTCTTCAGAGTCTATAGAAGCGAAATCCACTACATCTGAGGAGTGA

Protein sequence

>Msa0256430

MYGATTQISSSSSSTSRKGWTIYEIVRYAPLHNWLAYEEALKTNPVFAKMVISGVVYSVGDWIAQCFEGKPLFEFDRARMFRSGLVGFALHGSLSHYYYQFCEELFPYKGWWVVPVKVAFDQTAWSAVWNSIYYTVVGILRFDSPINIFNELKATFFPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDMIELIWVTILSTYSNEKSEARSSSESIEAKSTTSEE*