Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0873930 | XP_013451026.1 | 96.096 | 333 | 12 | 1 | 1 | 332 | 1 | 333 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0873930 | sp|Q9S7W5|TCP13_ARATH | 75.000 | 88 | 22 | 0 | 32 | 119 | 57 | 144 | 1.59e-39 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0873930 | A0A072U6R0 | 96.096 | 333 | 12 | 1 | 1 | 332 | 1 | 333 | 0.0 | 657 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0873930 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012260 | Msa0873930 | 0.815113 | 1.091728e-51 | -8.615850e-47 |
| Msa0030030 | Msa0873930 | 0.812946 | 3.281896e-51 | -8.615850e-47 |
| Msa0060970 | Msa0873930 | 0.814113 | 1.817158e-51 | -8.615850e-47 |
| Msa0108850 | Msa0873930 | 0.852645 | 4.028754e-61 | -8.615850e-47 |
| Msa0608120 | Msa0873930 | 0.800073 | 1.709637e-48 | -8.615850e-47 |
| Msa0690990 | Msa0873930 | 0.802635 | 5.108893e-49 | -8.615850e-47 |
| Msa0151950 | Msa0873930 | 0.850955 | 1.214818e-60 | -8.615850e-47 |
| Msa0216560 | Msa0873930 | 0.811600 | 6.454871e-51 | -8.615850e-47 |
| Msa0370870 | Msa0873930 | 0.820655 | 6.114354e-53 | -8.615850e-47 |
| Msa0419050 | Msa0873930 | 0.824422 | 8.141785e-54 | -8.615850e-47 |
| Msa0256170 | Msa0873930 | 0.804597 | 2.001601e-49 | -8.615850e-47 |
| Msa0256430 | Msa0873930 | 0.811274 | 7.600595e-51 | -8.615850e-47 |
| Msa0288320 | Msa0873930 | 0.803232 | 3.846464e-49 | -8.615850e-47 |
| Msa0310490 | Msa0873930 | 0.802149 | 6.434126e-49 | -8.615850e-47 |
| Msa0510560 | Msa0873930 | 0.811543 | 6.641594e-51 | -8.615850e-47 |
| Msa0873930 | Msa0906670 | 0.983529 | 5.434908e-158 | -8.615850e-47 |
| Msa0873930 | Msa0934940 | -0.824655 | 7.176019e-54 | -8.615850e-47 |
| Msa0873930 | Msa0975970 | 0.816240 | 6.123069e-52 | -8.615850e-47 |
| Msa0873930 | Msa1041550 | 0.818839 | 1.589634e-52 | -8.615850e-47 |
| Msa0873930 | Msa1081530 | 0.804178 | 2.446988e-49 | -8.615850e-47 |
| Msa0873930 | Msa1120620 | 0.813142 | 2.972433e-51 | -8.615850e-47 |
| Msa0873930 | Msa1166450 | 0.827563 | 1.460451e-54 | -8.615850e-47 |
| Msa0873930 | Msa1357720 | 0.822534 | 2.250445e-53 | -8.615850e-47 |
| Msa0873930 | Msa1405470 | 0.810666 | 1.029311e-50 | -8.615850e-47 |
| Msa0873930 | Msa1415820 | 0.814303 | 1.650590e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0873930 | MtrunA17_Chr6g0454781 | 96.096 | 333 | 12 | 1 | 1 | 332 | 1 | 333 | 0.0 | 657 |
| Msa0873930 | MtrunA17_Chr7g0219461 | 44.415 | 376 | 139 | 18 | 2 | 332 | 1 | 351 | 3.98e-67 | 214 |
| Msa0873930 | MtrunA17_Chr4g0061561 | 69.318 | 88 | 27 | 0 | 27 | 114 | 35 | 122 | 2.23e-38 | 138 |
| Msa0873930 | MtrunA17_Chr3g0086961 | 63.303 | 109 | 37 | 2 | 22 | 128 | 28 | 135 | 4.09e-38 | 139 |
| Msa0873930 | MtrunA17_Chr8g0376571 | 72.222 | 72 | 20 | 0 | 39 | 110 | 51 | 122 | 5.02e-28 | 113 |
| Msa0873930 | MtrunA17_Chr2g0325171 | 58.140 | 86 | 30 | 2 | 27 | 109 | 5 | 87 | 8.53e-24 | 99.8 |
| Msa0873930 | MtrunA17_Chr4g0040921 | 56.250 | 96 | 36 | 2 | 27 | 119 | 3 | 95 | 1.12e-23 | 99.4 |
| Msa0873930 | MtrunA17_Chr8g0360441 | 53.261 | 92 | 40 | 1 | 19 | 110 | 27 | 115 | 9.47e-22 | 95.1 |
| Msa0873930 | MtrunA17_Chr2g0316391 | 51.042 | 96 | 44 | 2 | 43 | 138 | 14 | 106 | 9.39e-21 | 90.5 |
| Msa0873930 | MtrunA17_Chr6g0456881 | 42.857 | 105 | 55 | 2 | 50 | 150 | 127 | 230 | 1.50e-16 | 80.1 |
| Msa0873930 | MtrunA17_Chr7g0220931 | 56.140 | 57 | 25 | 0 | 51 | 107 | 122 | 178 | 7.54e-15 | 74.7 |
| Msa0873930 | MtrunA17_Chr4g0062691 | 58.621 | 58 | 24 | 0 | 50 | 107 | 133 | 190 | 8.55e-15 | 74.7 |
| Msa0873930 | MtrunA17_Chr1g0205131 | 51.667 | 60 | 29 | 0 | 48 | 107 | 108 | 167 | 3.01e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0873930 | AT3G02150.1 | 75.000 | 88 | 22 | 0 | 32 | 119 | 57 | 144 | 6.92e-41 | 144 |
| Msa0873930 | AT3G02150.2 | 75.000 | 88 | 22 | 0 | 32 | 119 | 57 | 144 | 1.62e-40 | 145 |
| Msa0873930 | AT5G60970.1 | 70.000 | 90 | 26 | 1 | 35 | 124 | 49 | 137 | 3.12e-38 | 139 |
| Msa0873930 | AT5G08070.2 | 67.778 | 90 | 26 | 1 | 26 | 115 | 13 | 99 | 7.58e-37 | 133 |
| Msa0873930 | AT5G08070.1 | 67.778 | 90 | 26 | 1 | 26 | 115 | 13 | 99 | 7.58e-37 | 133 |
| Msa0873930 | AT1G30210.2 | 70.833 | 72 | 21 | 0 | 39 | 110 | 40 | 111 | 5.43e-28 | 111 |
| Msa0873930 | AT1G30210.1 | 70.833 | 72 | 21 | 0 | 39 | 110 | 40 | 111 | 5.43e-28 | 111 |
| Msa0873930 | AT4G18390.1 | 69.444 | 72 | 22 | 0 | 39 | 110 | 32 | 103 | 2.85e-27 | 110 |
| Msa0873930 | AT4G18390.2 | 69.444 | 72 | 22 | 0 | 39 | 110 | 32 | 103 | 2.85e-27 | 110 |
| Msa0873930 | AT3G15030.2 | 64.286 | 70 | 22 | 1 | 43 | 109 | 39 | 108 | 1.43e-21 | 95.1 |
| Msa0873930 | AT3G15030.4 | 64.286 | 70 | 22 | 1 | 43 | 109 | 39 | 108 | 1.43e-21 | 95.1 |
| Msa0873930 | AT3G15030.3 | 64.286 | 70 | 22 | 1 | 43 | 109 | 39 | 108 | 1.43e-21 | 95.1 |
| Msa0873930 | AT3G15030.1 | 64.286 | 70 | 22 | 1 | 43 | 109 | 39 | 108 | 1.43e-21 | 95.1 |
| Msa0873930 | AT2G31070.1 | 66.154 | 65 | 22 | 0 | 43 | 107 | 23 | 87 | 2.92e-21 | 93.6 |
| Msa0873930 | AT1G53230.1 | 60.811 | 74 | 27 | 1 | 43 | 116 | 43 | 114 | 8.49e-21 | 92.4 |
| Msa0873930 | AT1G53230.2 | 60.811 | 74 | 27 | 1 | 43 | 116 | 43 | 114 | 8.49e-21 | 92.4 |
| Msa0873930 | AT3G18550.2 | 34.058 | 138 | 89 | 2 | 36 | 172 | 136 | 272 | 5.04e-15 | 75.9 |
| Msa0873930 | AT3G18550.1 | 44.706 | 85 | 46 | 1 | 36 | 120 | 136 | 219 | 1.19e-14 | 74.7 |
| Msa0873930 | AT3G18550.4 | 44.706 | 85 | 46 | 1 | 36 | 120 | 136 | 219 | 1.19e-14 | 74.7 |
| Msa0873930 | AT3G18550.3 | 34.266 | 143 | 86 | 4 | 36 | 172 | 136 | 276 | 1.44e-14 | 74.7 |
| Msa0873930 | AT1G67260.2 | 47.143 | 70 | 37 | 0 | 38 | 107 | 76 | 145 | 1.55e-14 | 73.9 |
| Msa0873930 | AT1G67260.3 | 47.143 | 70 | 37 | 0 | 38 | 107 | 76 | 145 | 1.55e-14 | 73.9 |
| Msa0873930 | AT1G67260.1 | 47.143 | 70 | 37 | 0 | 38 | 107 | 76 | 145 | 1.71e-14 | 73.9 |
| Msa0873930 | AT1G68800.1 | 46.269 | 67 | 36 | 0 | 41 | 107 | 104 | 170 | 3.74e-13 | 70.1 |
| Msa0873930 | AT1G68800.2 | 46.269 | 67 | 36 | 0 | 41 | 107 | 104 | 170 | 3.86e-13 | 70.1 |
Find 64 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAATCTTGATCTTTA+TGG | 0.044174 | 6_1:-9558600 | None:intergenic |
| ATTCCTCAATTATCAAATTT+TGG | 0.140046 | 6_1:+9558319 | Msa0873930:CDS |
| TTCCATCTATATCTTTAATT+TGG | 0.175055 | 6_1:-9558351 | None:intergenic |
| GGCAAAACAACACTTCAATT+TGG | 0.234675 | 6_1:+9558032 | Msa0873930:CDS |
| AATGGAAATTCAGCTTCTTT+TGG | 0.237631 | 6_1:-9557644 | None:intergenic |
| AGGAAAATCTTGATCTTTAT+GGG | 0.249668 | 6_1:-9558599 | None:intergenic |
| AACTCAACATTTGATCATAT+TGG | 0.267875 | 6_1:-9558483 | None:intergenic |
| ATCAAATTCTAAACAAGGTT+TGG | 0.270536 | 6_1:+9558057 | Msa0873930:CDS |
| AAATGTGGTGATAGACTATT+TGG | 0.273755 | 6_1:-9558181 | None:intergenic |
| AGCAAAGTATACACAATAAA+AGG | 0.279500 | 6_1:+9557791 | Msa0873930:CDS |
| TTGTTACTAACAAAGAAAAT+TGG | 0.289821 | 6_1:+9558086 | Msa0873930:CDS |
| GGAAGAACTTCTTGTTTCAA+TGG | 0.338725 | 6_1:-9557662 | None:intergenic |
| AAAGATATAGATGGAAATAA+TGG | 0.354082 | 6_1:+9558358 | Msa0873930:CDS |
| TCAAATTCTAAACAAGGTTT+GGG | 0.369970 | 6_1:+9558058 | Msa0873930:CDS |
| TAAAAGGACTAAGAGATAGA+AGG | 0.370333 | 6_1:+9557807 | Msa0873930:CDS |
| CATAGAGGTGAATTGCTGTT+TGG | 0.373931 | 6_1:-9557844 | None:intergenic |
| TATGATCTTCAAGATAGGTT+AGG | 0.379456 | 6_1:+9557863 | Msa0873930:CDS |
| GAATAGAAGTGAAGAGGATA+AGG | 0.381720 | 6_1:+9558111 | Msa0873930:CDS |
| GTGAGGGTGTCTAGAGCCTT+TGG | 0.385600 | 6_1:+9557752 | Msa0873930:CDS |
| GATGTAGTTGAATCATTTGA+TGG | 0.398042 | 6_1:-9557683 | None:intergenic |
| ATCATATTTGAGACATTGTC+AGG | 0.398351 | 6_1:-9558208 | None:intergenic |
| TATGCCACTTGGTTATCAAT+TGG | 0.411517 | 6_1:+9558279 | Msa0873930:CDS |
| CTATTTCTAATGATGATGTT+AGG | 0.414220 | 6_1:+9558011 | Msa0873930:CDS |
| AACCAAATTAAAGATATAGA+TGG | 0.417012 | 6_1:+9558349 | Msa0873930:CDS |
| AATCCAAAATTTGATAATTG+AGG | 0.428558 | 6_1:-9558322 | None:intergenic |
| CTAGACACCCTCACAATTCT+CGG | 0.444864 | 6_1:-9557743 | None:intergenic |
| ACCTCTATGATCTTCAAGAT+AGG | 0.446546 | 6_1:+9557858 | Msa0873930:CDS |
| CCTCAAGGAAACTTCACCTT+AGG | 0.453243 | 6_1:+9557968 | Msa0873930:CDS |
| AACCTAGCAAGGTTGTTGAT+TGG | 0.456423 | 6_1:+9557894 | Msa0873930:CDS |
| AATCAACAACCTTGCTAGGT+TGG | 0.486484 | 6_1:-9557892 | None:intergenic |
| ATGATCTTCAAGATAGGTTA+GGG | 0.493307 | 6_1:+9557864 | Msa0873930:CDS |
| TATTGGTAATTGATTTGTGT+TGG | 0.498253 | 6_1:-9558466 | None:intergenic |
| AGAAGGTTGATTTGCTCCAC+GGG | 0.498527 | 6_1:-9558236 | None:intergenic |
| GAAATAGTACTAGCAAAAGA+TGG | 0.507242 | 6_1:-9557995 | None:intergenic |
| TTGGTTGCTTAATATAGCTA+AGG | 0.527119 | 6_1:+9557913 | Msa0873930:CDS |
| GTTGACAAACACAATGATGA+TGG | 0.532225 | 6_1:-9558400 | None:intergenic |
| ACCCTCATGAGTTGTTGAGT+TGG | 0.533643 | 6_1:-9558532 | None:intergenic |
| CCTTGAGGTATTTGAAGTGG+TGG | 0.545071 | 6_1:-9557953 | None:intergenic |
| AAAAGGACTAAGAGATAGAA+GGG | 0.548162 | 6_1:+9557808 | Msa0873930:CDS |
| ACATGTTGGAGCAGTGCAGA+TGG | 0.549860 | 6_1:+9558441 | Msa0873930:CDS |
| CAAACACAATGATGATGGAA+AGG | 0.552149 | 6_1:-9558395 | None:intergenic |
| AGCAAAAGATGGATAACCTA+AGG | 0.554824 | 6_1:-9557984 | None:intergenic |
| AGAGGATAAGGAGAAGAAAG+AGG | 0.558032 | 6_1:+9558123 | Msa0873930:CDS |
| GACTAAGAGATAGAAGGGTA+AGG | 0.563692 | 6_1:+9557813 | Msa0873930:CDS |
| AAGAAGGTTGATTTGCTCCA+CGG | 0.566627 | 6_1:-9558237 | None:intergenic |
| TGGAAATCAAATTCTAAACA+AGG | 0.571909 | 6_1:+9558052 | Msa0873930:CDS |
| TTTCCTTGAGGTATTTGAAG+TGG | 0.572428 | 6_1:-9557956 | None:intergenic |
| AAACACAATGATGATGGAAA+GGG | 0.575569 | 6_1:-9558394 | None:intergenic |
| TTGGATGAATAGAAGTGAAG+AGG | 0.578717 | 6_1:+9558105 | Msa0873930:CDS |
| TCAAATATGATTATCTCCCG+TGG | 0.582563 | 6_1:+9558220 | Msa0873930:CDS |
| TGAGGAATATGACTAGATGA+AGG | 0.598042 | 6_1:-9558304 | None:intergenic |
| ACCTATCTTGAAGATCATAG+AGG | 0.598434 | 6_1:-9557859 | None:intergenic |
| AACCAATCAACAACCTTGCT+AGG | 0.598789 | 6_1:-9557896 | None:intergenic |
| AGGGCTAAACCAACCTAGCA+AGG | 0.604516 | 6_1:+9557883 | Msa0873930:CDS |
| ATCCAACTCAACAACTCATG+AGG | 0.610385 | 6_1:+9558530 | Msa0873930:CDS |
| TTGTTGAATACTATGCCACT+TGG | 0.614899 | 6_1:+9558268 | Msa0873930:CDS |
| TAAAAGATCCGAGAATTGTG+AGG | 0.618056 | 6_1:+9557735 | Msa0873930:CDS |
| AAAAGATCCGAGAATTGTGA+GGG | 0.632124 | 6_1:+9557736 | Msa0873930:CDS |
| TCCAACTCAACAACTCATGA+GGG | 0.652080 | 6_1:+9558531 | Msa0873930:CDS |
| CCACCACTTCAAATACCTCA+AGG | 0.652969 | 6_1:+9557953 | Msa0873930:CDS |
| CATCATCAACAACATCGCAA+TGG | 0.655304 | 6_1:+9557705 | Msa0873930:CDS |
| CCTAAGGTGAAGTTTCCTTG+AGG | 0.673049 | 6_1:-9557968 | None:intergenic |
| GGCTCCAATTGATAACCAAG+TGG | 0.685997 | 6_1:-9558283 | None:intergenic |
| ACATTGTCAGGTACTAAATG+TGG | 0.701020 | 6_1:-9558196 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTACTAACAAAGAAAAT+TGG | + | chr6_1:9558086-9558105 | Msa0873930:CDS | 20.0% |
| !!! | ATTCCTCAATTATCAAATTT+TGG | + | chr6_1:9558319-9558338 | Msa0873930:CDS | 20.0% |
| !!! | AATCCAAAATTTGATAATTG+AGG | - | chr6_1:9558325-9558344 | None:intergenic | 20.0% |
| !! | AACCAAATTAAAGATATAGA+TGG | + | chr6_1:9558349-9558368 | Msa0873930:CDS | 20.0% |
| !! | TTCCATCTATATCTTTAATT+TGG | - | chr6_1:9558354-9558373 | None:intergenic | 20.0% |
| !! | AAAGATATAGATGGAAATAA+TGG | + | chr6_1:9558358-9558377 | Msa0873930:CDS | 20.0% |
| !! | TTGAGAGAATGAAAAAATTT+AGG | - | chr6_1:9558562-9558581 | None:intergenic | 20.0% |
| !! | TTGTTACTAACAAAGAAAAT+TGG | + | chr6_1:9558086-9558105 | Msa0873930:CDS | 20.0% |
| !!! | ATTCCTCAATTATCAAATTT+TGG | + | chr6_1:9558319-9558338 | Msa0873930:CDS | 20.0% |
| !!! | AATCCAAAATTTGATAATTG+AGG | - | chr6_1:9558325-9558344 | None:intergenic | 20.0% |
| !! | AACCAAATTAAAGATATAGA+TGG | + | chr6_1:9558349-9558368 | Msa0873930:CDS | 20.0% |
| !! | TTCCATCTATATCTTTAATT+TGG | - | chr6_1:9558354-9558373 | None:intergenic | 20.0% |
| !! | AAAGATATAGATGGAAATAA+TGG | + | chr6_1:9558358-9558377 | Msa0873930:CDS | 20.0% |
| !! | TTGAGAGAATGAAAAAATTT+AGG | - | chr6_1:9558562-9558581 | None:intergenic | 20.0% |
| ! | AGCAAAGTATACACAATAAA+AGG | + | chr6_1:9557791-9557810 | Msa0873930:CDS | 25.0% |
| !!! | CTATTTCTAATGATGATGTT+AGG | + | chr6_1:9558011-9558030 | Msa0873930:CDS | 25.0% |
| ! | TGGAAATCAAATTCTAAACA+AGG | + | chr6_1:9558052-9558071 | Msa0873930:CDS | 25.0% |
| ! | ATCAAATTCTAAACAAGGTT+TGG | + | chr6_1:9558057-9558076 | Msa0873930:CDS | 25.0% |
| ! | TCAAATTCTAAACAAGGTTT+GGG | + | chr6_1:9558058-9558077 | Msa0873930:CDS | 25.0% |
| !! | CAATATTTTTCTTCACATGT+TGG | + | chr6_1:9558427-9558446 | Msa0873930:CDS | 25.0% |
| !!! | TATTGGTAATTGATTTGTGT+TGG | - | chr6_1:9558469-9558488 | None:intergenic | 25.0% |
| ! | AACTCAACATTTGATCATAT+TGG | - | chr6_1:9558486-9558505 | None:intergenic | 25.0% |
| ! | AGGAAAATCTTGATCTTTAT+GGG | - | chr6_1:9558602-9558621 | None:intergenic | 25.0% |
| ! | AAGGAAAATCTTGATCTTTA+TGG | - | chr6_1:9558603-9558622 | None:intergenic | 25.0% |
| ! | AGCAAAGTATACACAATAAA+AGG | + | chr6_1:9557791-9557810 | Msa0873930:CDS | 25.0% |
| !!! | CTATTTCTAATGATGATGTT+AGG | + | chr6_1:9558011-9558030 | Msa0873930:CDS | 25.0% |
| ! | TGGAAATCAAATTCTAAACA+AGG | + | chr6_1:9558052-9558071 | Msa0873930:CDS | 25.0% |
| ! | ATCAAATTCTAAACAAGGTT+TGG | + | chr6_1:9558057-9558076 | Msa0873930:CDS | 25.0% |
| ! | TCAAATTCTAAACAAGGTTT+GGG | + | chr6_1:9558058-9558077 | Msa0873930:CDS | 25.0% |
| !! | CAATATTTTTCTTCACATGT+TGG | + | chr6_1:9558427-9558446 | Msa0873930:CDS | 25.0% |
| !!! | TATTGGTAATTGATTTGTGT+TGG | - | chr6_1:9558469-9558488 | None:intergenic | 25.0% |
| ! | AACTCAACATTTGATCATAT+TGG | - | chr6_1:9558486-9558505 | None:intergenic | 25.0% |
| ! | AGGAAAATCTTGATCTTTAT+GGG | - | chr6_1:9558602-9558621 | None:intergenic | 25.0% |
| ! | AAGGAAAATCTTGATCTTTA+TGG | - | chr6_1:9558603-9558622 | None:intergenic | 25.0% |
| ! | AATGGAAATTCAGCTTCTTT+TGG | - | chr6_1:9557647-9557666 | None:intergenic | 30.0% |
| GATGTAGTTGAATCATTTGA+TGG | - | chr6_1:9557686-9557705 | None:intergenic | 30.0% | |
| ! | ATGTCTATCTTTTGTTCCAA+AGG | - | chr6_1:9557771-9557790 | None:intergenic | 30.0% |
| TAAAAGGACTAAGAGATAGA+AGG | + | chr6_1:9557807-9557826 | Msa0873930:CDS | 30.0% | |
| AAAAGGACTAAGAGATAGAA+GGG | + | chr6_1:9557808-9557827 | Msa0873930:CDS | 30.0% | |
| TATGATCTTCAAGATAGGTT+AGG | + | chr6_1:9557863-9557882 | Msa0873930:CDS | 30.0% | |
| ATGATCTTCAAGATAGGTTA+GGG | + | chr6_1:9557864-9557883 | Msa0873930:CDS | 30.0% | |
| TTGGTTGCTTAATATAGCTA+AGG | + | chr6_1:9557913-9557932 | Msa0873930:CDS | 30.0% | |
| GAAATAGTACTAGCAAAAGA+TGG | - | chr6_1:9557998-9558017 | None:intergenic | 30.0% | |
| AAATGTGGTGATAGACTATT+TGG | - | chr6_1:9558184-9558203 | None:intergenic | 30.0% | |
| ! | ATCATATTTGAGACATTGTC+AGG | - | chr6_1:9558211-9558230 | None:intergenic | 30.0% |
| !!! | AGCAAATCAACCTTCTTTTT+TGG | + | chr6_1:9558243-9558262 | Msa0873930:CDS | 30.0% |
| !!! | GCAAATCAACCTTCTTTTTT+GGG | + | chr6_1:9558244-9558263 | Msa0873930:CDS | 30.0% |
| TTCAACAATCCCAAAAAAGA+AGG | - | chr6_1:9558256-9558275 | None:intergenic | 30.0% | |
| !! | AAACACAATGATGATGGAAA+GGG | - | chr6_1:9558397-9558416 | None:intergenic | 30.0% |
| ! | AATGGAAATTCAGCTTCTTT+TGG | - | chr6_1:9557647-9557666 | None:intergenic | 30.0% |
| GATGTAGTTGAATCATTTGA+TGG | - | chr6_1:9557686-9557705 | None:intergenic | 30.0% | |
| ! | ATGTCTATCTTTTGTTCCAA+AGG | - | chr6_1:9557771-9557790 | None:intergenic | 30.0% |
| TAAAAGGACTAAGAGATAGA+AGG | + | chr6_1:9557807-9557826 | Msa0873930:CDS | 30.0% | |
| AAAAGGACTAAGAGATAGAA+GGG | + | chr6_1:9557808-9557827 | Msa0873930:CDS | 30.0% | |
| TATGATCTTCAAGATAGGTT+AGG | + | chr6_1:9557863-9557882 | Msa0873930:CDS | 30.0% | |
| ATGATCTTCAAGATAGGTTA+GGG | + | chr6_1:9557864-9557883 | Msa0873930:CDS | 30.0% | |
| TTGGTTGCTTAATATAGCTA+AGG | + | chr6_1:9557913-9557932 | Msa0873930:CDS | 30.0% | |
| GAAATAGTACTAGCAAAAGA+TGG | - | chr6_1:9557998-9558017 | None:intergenic | 30.0% | |
| AAATGTGGTGATAGACTATT+TGG | - | chr6_1:9558184-9558203 | None:intergenic | 30.0% | |
| ! | ATCATATTTGAGACATTGTC+AGG | - | chr6_1:9558211-9558230 | None:intergenic | 30.0% |
| !!! | AGCAAATCAACCTTCTTTTT+TGG | + | chr6_1:9558243-9558262 | Msa0873930:CDS | 30.0% |
| !!! | GCAAATCAACCTTCTTTTTT+GGG | + | chr6_1:9558244-9558263 | Msa0873930:CDS | 30.0% |
| TTCAACAATCCCAAAAAAGA+AGG | - | chr6_1:9558256-9558275 | None:intergenic | 30.0% | |
| !! | AAACACAATGATGATGGAAA+GGG | - | chr6_1:9558397-9558416 | None:intergenic | 30.0% |
| ! | GGAAGAACTTCTTGTTTCAA+TGG | - | chr6_1:9557665-9557684 | None:intergenic | 35.0% |
| TAAAAGATCCGAGAATTGTG+AGG | + | chr6_1:9557735-9557754 | Msa0873930:CDS | 35.0% | |
| AAAAGATCCGAGAATTGTGA+GGG | + | chr6_1:9557736-9557755 | Msa0873930:CDS | 35.0% | |
| ACCTCTATGATCTTCAAGAT+AGG | + | chr6_1:9557858-9557877 | Msa0873930:CDS | 35.0% | |
| ACCTATCTTGAAGATCATAG+AGG | - | chr6_1:9557862-9557881 | None:intergenic | 35.0% | |
| ! | TTTCCTTGAGGTATTTGAAG+TGG | - | chr6_1:9557959-9557978 | None:intergenic | 35.0% |
| AGCAAAAGATGGATAACCTA+AGG | - | chr6_1:9557987-9558006 | None:intergenic | 35.0% | |
| GGCAAAACAACACTTCAATT+TGG | + | chr6_1:9558032-9558051 | Msa0873930:CDS | 35.0% | |
| TTGGATGAATAGAAGTGAAG+AGG | + | chr6_1:9558105-9558124 | Msa0873930:CDS | 35.0% | |
| GAATAGAAGTGAAGAGGATA+AGG | + | chr6_1:9558111-9558130 | Msa0873930:CDS | 35.0% | |
| ACATTGTCAGGTACTAAATG+TGG | - | chr6_1:9558199-9558218 | None:intergenic | 35.0% | |
| TCAAATATGATTATCTCCCG+TGG | + | chr6_1:9558220-9558239 | Msa0873930:CDS | 35.0% | |
| TTGTTGAATACTATGCCACT+TGG | + | chr6_1:9558268-9558287 | Msa0873930:CDS | 35.0% | |
| ! | TATGCCACTTGGTTATCAAT+TGG | + | chr6_1:9558279-9558298 | Msa0873930:CDS | 35.0% |
| TGAGGAATATGACTAGATGA+AGG | - | chr6_1:9558307-9558326 | None:intergenic | 35.0% | |
| !! | CAAACACAATGATGATGGAA+AGG | - | chr6_1:9558398-9558417 | None:intergenic | 35.0% |
| GTTGACAAACACAATGATGA+TGG | - | chr6_1:9558403-9558422 | None:intergenic | 35.0% | |
| ! | GGAAGAACTTCTTGTTTCAA+TGG | - | chr6_1:9557665-9557684 | None:intergenic | 35.0% |
| TAAAAGATCCGAGAATTGTG+AGG | + | chr6_1:9557735-9557754 | Msa0873930:CDS | 35.0% | |
| AAAAGATCCGAGAATTGTGA+GGG | + | chr6_1:9557736-9557755 | Msa0873930:CDS | 35.0% | |
| ACCTCTATGATCTTCAAGAT+AGG | + | chr6_1:9557858-9557877 | Msa0873930:CDS | 35.0% | |
| ACCTATCTTGAAGATCATAG+AGG | - | chr6_1:9557862-9557881 | None:intergenic | 35.0% | |
| ! | TTTCCTTGAGGTATTTGAAG+TGG | - | chr6_1:9557959-9557978 | None:intergenic | 35.0% |
| AGCAAAAGATGGATAACCTA+AGG | - | chr6_1:9557987-9558006 | None:intergenic | 35.0% | |
| GGCAAAACAACACTTCAATT+TGG | + | chr6_1:9558032-9558051 | Msa0873930:CDS | 35.0% | |
| TTGGATGAATAGAAGTGAAG+AGG | + | chr6_1:9558105-9558124 | Msa0873930:CDS | 35.0% | |
| GAATAGAAGTGAAGAGGATA+AGG | + | chr6_1:9558111-9558130 | Msa0873930:CDS | 35.0% | |
| ACATTGTCAGGTACTAAATG+TGG | - | chr6_1:9558199-9558218 | None:intergenic | 35.0% | |
| TCAAATATGATTATCTCCCG+TGG | + | chr6_1:9558220-9558239 | Msa0873930:CDS | 35.0% | |
| TTGTTGAATACTATGCCACT+TGG | + | chr6_1:9558268-9558287 | Msa0873930:CDS | 35.0% | |
| ! | TATGCCACTTGGTTATCAAT+TGG | + | chr6_1:9558279-9558298 | Msa0873930:CDS | 35.0% |
| TGAGGAATATGACTAGATGA+AGG | - | chr6_1:9558307-9558326 | None:intergenic | 35.0% | |
| !! | CAAACACAATGATGATGGAA+AGG | - | chr6_1:9558398-9558417 | None:intergenic | 35.0% |
| GTTGACAAACACAATGATGA+TGG | - | chr6_1:9558403-9558422 | None:intergenic | 35.0% | |
| CATCATCAACAACATCGCAA+TGG | + | chr6_1:9557705-9557724 | Msa0873930:CDS | 40.0% | |
| GACTAAGAGATAGAAGGGTA+AGG | + | chr6_1:9557813-9557832 | Msa0873930:CDS | 40.0% | |
| ! | CATAGAGGTGAATTGCTGTT+TGG | - | chr6_1:9557847-9557866 | None:intergenic | 40.0% |
| AATCAACAACCTTGCTAGGT+TGG | - | chr6_1:9557895-9557914 | None:intergenic | 40.0% | |
| AACCTAGCAAGGTTGTTGAT+TGG | + | chr6_1:9557894-9557913 | Msa0873930:CDS | 40.0% | |
| AACCAATCAACAACCTTGCT+AGG | - | chr6_1:9557899-9557918 | None:intergenic | 40.0% | |
| AGAGGATAAGGAGAAGAAAG+AGG | + | chr6_1:9558123-9558142 | Msa0873930:CDS | 40.0% | |
| !! | AAGAAGGTTGATTTGCTCCA+CGG | - | chr6_1:9558240-9558259 | None:intergenic | 40.0% |
| ATCCAACTCAACAACTCATG+AGG | + | chr6_1:9558530-9558549 | Msa0873930:CDS | 40.0% | |
| TCCAACTCAACAACTCATGA+GGG | + | chr6_1:9558531-9558550 | Msa0873930:CDS | 40.0% | |
| CATCATCAACAACATCGCAA+TGG | + | chr6_1:9557705-9557724 | Msa0873930:CDS | 40.0% | |
| GACTAAGAGATAGAAGGGTA+AGG | + | chr6_1:9557813-9557832 | Msa0873930:CDS | 40.0% | |
| ! | CATAGAGGTGAATTGCTGTT+TGG | - | chr6_1:9557847-9557866 | None:intergenic | 40.0% |
| AATCAACAACCTTGCTAGGT+TGG | - | chr6_1:9557895-9557914 | None:intergenic | 40.0% | |
| AACCTAGCAAGGTTGTTGAT+TGG | + | chr6_1:9557894-9557913 | Msa0873930:CDS | 40.0% | |
| AACCAATCAACAACCTTGCT+AGG | - | chr6_1:9557899-9557918 | None:intergenic | 40.0% | |
| AGAGGATAAGGAGAAGAAAG+AGG | + | chr6_1:9558123-9558142 | Msa0873930:CDS | 40.0% | |
| !! | AAGAAGGTTGATTTGCTCCA+CGG | - | chr6_1:9558240-9558259 | None:intergenic | 40.0% |
| ATCCAACTCAACAACTCATG+AGG | + | chr6_1:9558530-9558549 | Msa0873930:CDS | 40.0% | |
| TCCAACTCAACAACTCATGA+GGG | + | chr6_1:9558531-9558550 | Msa0873930:CDS | 40.0% | |
| CTAGACACCCTCACAATTCT+CGG | - | chr6_1:9557746-9557765 | None:intergenic | 45.0% | |
| ! | CCTTGAGGTATTTGAAGTGG+TGG | - | chr6_1:9557956-9557975 | None:intergenic | 45.0% |
| CCACCACTTCAAATACCTCA+AGG | + | chr6_1:9557953-9557972 | Msa0873930:CDS | 45.0% | |
| CCTAAGGTGAAGTTTCCTTG+AGG | - | chr6_1:9557971-9557990 | None:intergenic | 45.0% | |
| CCTCAAGGAAACTTCACCTT+AGG | + | chr6_1:9557968-9557987 | Msa0873930:CDS | 45.0% | |
| !! | AGAAGGTTGATTTGCTCCAC+GGG | - | chr6_1:9558239-9558258 | None:intergenic | 45.0% |
| ! | GGCTCCAATTGATAACCAAG+TGG | - | chr6_1:9558286-9558305 | None:intergenic | 45.0% |
| ACCCTCATGAGTTGTTGAGT+TGG | - | chr6_1:9558535-9558554 | None:intergenic | 45.0% | |
| CTAGACACCCTCACAATTCT+CGG | - | chr6_1:9557746-9557765 | None:intergenic | 45.0% | |
| ! | CCTTGAGGTATTTGAAGTGG+TGG | - | chr6_1:9557956-9557975 | None:intergenic | 45.0% |
| CCACCACTTCAAATACCTCA+AGG | + | chr6_1:9557953-9557972 | Msa0873930:CDS | 45.0% | |
| CCTAAGGTGAAGTTTCCTTG+AGG | - | chr6_1:9557971-9557990 | None:intergenic | 45.0% | |
| CCTCAAGGAAACTTCACCTT+AGG | + | chr6_1:9557968-9557987 | Msa0873930:CDS | 45.0% | |
| !! | AGAAGGTTGATTTGCTCCAC+GGG | - | chr6_1:9558239-9558258 | None:intergenic | 45.0% |
| ! | GGCTCCAATTGATAACCAAG+TGG | - | chr6_1:9558286-9558305 | None:intergenic | 45.0% |
| ACCCTCATGAGTTGTTGAGT+TGG | - | chr6_1:9558535-9558554 | None:intergenic | 45.0% | |
| AGGGCTAAACCAACCTAGCA+AGG | + | chr6_1:9557883-9557902 | Msa0873930:CDS | 50.0% | |
| ACATGTTGGAGCAGTGCAGA+TGG | + | chr6_1:9558441-9558460 | Msa0873930:CDS | 50.0% | |
| AGGGCTAAACCAACCTAGCA+AGG | + | chr6_1:9557883-9557902 | Msa0873930:CDS | 50.0% | |
| ACATGTTGGAGCAGTGCAGA+TGG | + | chr6_1:9558441-9558460 | Msa0873930:CDS | 50.0% | |
| !! | GTGAGGGTGTCTAGAGCCTT+TGG | + | chr6_1:9557752-9557771 | Msa0873930:CDS | 55.0% |
| !! | GTGAGGGTGTCTAGAGCCTT+TGG | + | chr6_1:9557752-9557771 | Msa0873930:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 9557632 | 9558630 | 9557632 | ID=Msa0873930;Name=Msa0873930 |
| chr6_1 | mRNA | 9557632 | 9558630 | 9557632 | ID=Msa0873930-mRNA-1;Parent=Msa0873930;Name=Msa0873930-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|332 |
| chr6_1 | exon | 9557632 | 9558630 | 9557632 | ID=Msa0873930-mRNA-1:exon:2909;Parent=Msa0873930-mRNA-1 |
| chr6_1 | CDS | 9557632 | 9558630 | 9557632 | ID=Msa0873930-mRNA-1:cds;Parent=Msa0873930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
