AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0914610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0914610 MtrunA17_Chr6g0469651 87.218 133 9 2 1 125 1 133 1.19e-57 174
Msa0914610 MtrunA17_Chr6g0469681 72.656 128 31 2 1 125 1 127 1.25e-49 154
Msa0914610 MtrunA17_Chr1g0202501 64.615 130 41 2 1 125 1 130 9.06e-40 129
Msa0914610 MtrunA17_Chr8g0387471 54.615 130 51 3 1 125 1 127 9.32e-37 121
Msa0914610 MtrunA17_Chr6g0469571 59.542 131 40 6 1 125 1 124 3.74e-33 112
Msa0914610 MtrunA17_Chr6g0469551 58.779 131 41 6 1 125 1 124 1.10e-32 111
Msa0914610 MtrunA17_Chr1g0202541 56.296 135 48 3 1 124 1 135 1.32e-32 111
Msa0914610 MtrunA17_Chr6g0469591 59.542 131 40 6 1 125 1 124 1.55e-32 110
Msa0914610 MtrunA17_Chr1g0202561 53.521 142 44 4 1 124 1 138 1.84e-29 103
Msa0914610 MtrunA17_Chr6g0469671 59.804 102 37 2 1 98 1 102 2.06e-29 102
Msa0914610 MtrunA17_Chr6g0469541 50.862 116 45 4 1 111 1 109 7.60e-28 98.6
Msa0914610 MtrunA17_Chr7g0233231 49.580 119 43 4 1 112 1 109 9.55e-28 98.6
Msa0914610 MtrunA17_Chr1g0202581 55.147 136 44 4 1 124 1 131 1.76e-27 98.6
Msa0914610 MtrunA17_Chr7g0233181 47.863 117 40 2 1 114 1 99 1.83e-27 97.4
Msa0914610 MtrunA17_Chr1g0204291 53.676 136 46 4 1 124 1 131 4.40e-27 97.4
Msa0914610 MtrunA17_Chr7g0233251 60.976 82 29 1 1 79 1 82 5.57e-27 96.7
Msa0914610 MtrunA17_Chr7g0233191 59.756 82 30 1 1 79 1 82 1.73e-26 95.1
Msa0914610 MtrunA17_Chr7g0233201 58.537 82 31 1 1 79 1 82 4.99e-26 94.0
Msa0914610 MtrunA17_Chr7g0233211 47.899 119 45 4 1 112 1 109 5.50e-26 94.0
Msa0914610 MtrunA17_Chr7g0248671 37.079 178 53 5 1 125 1 172 7.96e-17 72.0
Msa0914610 MtrunA17_Chr8g0348361 29.771 131 65 2 19 125 22 149 4.02e-14 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0914610 AT1G01490.1 56.338 71 27 2 1 67 1 71 6.69e-18 75.5
Msa0914610 AT1G01490.2 56.338 71 27 2 1 67 1 71 6.69e-18 75.5
Msa0914610 AT1G01490.4 56.522 69 26 2 3 67 30 98 8.26e-17 73.2
Msa0914610 AT5G52740.1 35.484 124 71 2 1 123 1 116 5.76e-16 68.9
Msa0914610 AT5G52760.1 40.000 130 57 7 5 124 7 125 2.02e-14 65.1
Msa0914610 AT5G52750.1 49.231 65 30 1 3 64 5 69 7.14e-13 61.6

Find 31 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATCAGCCAATTCCTCTTT+TGG 0.226013 6_2:-29234048 None:intergenic
TGAGAACATGAGAAGAAGTT+TGG 0.270000 6_2:+29234218 Msa0914610:three_prime_UTR
ACCAGCCAAAGAAGAGAAAA+AGG 0.297190 6_2:+29233990 Msa0914610:CDS
ACAAGAAAAGAAGAATAAAA+AGG 0.310585 6_2:-29234274 None:intergenic
GAAGGAAGAGCCAAAGATAA+AGG 0.341323 6_2:+29234023 Msa0914610:CDS
GAGAACATGAGAAGAAGTTT+GGG 0.358571 6_2:+29234219 Msa0914610:three_prime_UTR
ACAGTTCTGTAATAGTAATA+AGG 0.374019 6_2:-29234117 None:intergenic
AAGACCAGATACAGTCTTCA+TGG 0.391977 6_2:-29233521 None:intergenic
CTGTAATAGTAATAAGGATA+TGG 0.392835 6_2:-29234111 None:intergenic
AAAGGACCCAAAAGAGGAAT+TGG 0.394432 6_2:+29234041 Msa0914610:CDS
AAAGCCATGAAGACTGTATC+TGG 0.395060 6_2:+29233517 Msa0914610:CDS
GAGAAGAAGTTTGGGGTTGG+AGG 0.467072 6_2:+29234227 Msa0914610:three_prime_UTR
CATGAGAAGAAGTTTGGGGT+TGG 0.481334 6_2:+29234224 Msa0914610:three_prime_UTR
TTGACAGAAAATAGTGCTAA+AGG 0.490233 6_2:+29233465 Msa0914610:intron
AGGGGTTGAGTCTGTTTCAG+TGG 0.493775 6_2:+29233867 Msa0914610:intron
AGAAGAAGTTTGGGGTTGGA+GGG 0.507118 6_2:+29234228 Msa0914610:three_prime_UTR
GTCTGTTTCAGTGGACATGA+AGG 0.510268 6_2:+29233876 Msa0914610:CDS
CTAGCTTCAAATCAATATGC+AGG 0.524283 6_2:+29233142 Msa0914610:exon
GTGAGTAGTGTTGCTAAAGA+AGG 0.533667 6_2:-29233120 None:intergenic
CATGCTGAAATAGTTTCAGT+TGG 0.541567 6_2:+29233967 Msa0914610:CDS
AAAGATAAAGGACCCAAAAG+AGG 0.571741 6_2:+29234035 Msa0914610:CDS
GGAATTGGCTGATCTTGTGA+AGG 0.579782 6_2:+29234056 Msa0914610:CDS
TAACAAATAACACACCCACT+TGG 0.580370 6_2:-29234150 None:intergenic
TTGATGTGGTGGGAAAGTTA+AGG 0.592037 6_2:+29233935 Msa0914610:CDS
CATAGATACTGTTGATGTGG+TGG 0.595234 6_2:+29233924 Msa0914610:CDS
TTATTACTATTACAGAACTG+TGG 0.646231 6_2:+29234119 Msa0914610:CDS
ATAGATACTGTTGATGTGGT+GGG 0.650446 6_2:+29233925 Msa0914610:CDS
AGAACATGAGAAGAAGTTTG+GGG 0.656368 6_2:+29234220 Msa0914610:three_prime_UTR
CTGTGGAAGAGTCTCCAAGT+GGG 0.688645 6_2:+29234136 Msa0914610:CDS
AGACATAGATACTGTTGATG+TGG 0.701316 6_2:+29233921 Msa0914610:CDS
ACTGTGGAAGAGTCTCCAAG+TGG 0.720796 6_2:+29234135 Msa0914610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAGAAAAATATTTAAAA+AGG - chr6_2:29233355-29233374 None:intergenic 10.0%
!!! TTTTTATACTCTAAAAATAA+AGG + chr6_2:29233790-29233809 Msa0914610:intron 10.0%
!!! AGACATTTAAATATTTTTTA+TGG + chr6_2:29234173-29234192 Msa0914610:exon 10.0%
!! AAGAAGAAAAATATTTAAAA+AGG - chr6_2:29233355-29233374 None:intergenic 10.0%
!!! TTTTTATACTCTAAAAATAA+AGG + chr6_2:29233790-29233809 Msa0914610:intron 10.0%
!!! AGACATTTAAATATTTTTTA+TGG + chr6_2:29234173-29234192 Msa0914610:exon 10.0%
!! TGTTATAAAATTTCATCATT+AGG - chr6_2:29233208-29233227 None:intergenic 15.0%
!! TAAAAATAAAGGAAGAAAAA+TGG + chr6_2:29233801-29233820 Msa0914610:intron 15.0%
!!! TTTTTGTTATTTTCTTTTTC+AGG + chr6_2:29233847-29233866 Msa0914610:intron 15.0%
!!! TTTTGTTATTTTCTTTTTCA+GGG + chr6_2:29233848-29233867 Msa0914610:intron 15.0%
!!! ATAAATTGTACATTATTTTG+TGG + chr6_2:29234359-29234378 Msa0914610:three_prime_UTR 15.0%
!!! TAAATTGTACATTATTTTGT+GGG + chr6_2:29234360-29234379 Msa0914610:three_prime_UTR 15.0%
!! TGTTATAAAATTTCATCATT+AGG - chr6_2:29233208-29233227 None:intergenic 15.0%
!! TAAAAATAAAGGAAGAAAAA+TGG + chr6_2:29233801-29233820 Msa0914610:intron 15.0%
!!! TTTTTGTTATTTTCTTTTTC+AGG + chr6_2:29233847-29233866 Msa0914610:intron 15.0%
!!! TTTTGTTATTTTCTTTTTCA+GGG + chr6_2:29233848-29233867 Msa0914610:intron 15.0%
!!! ATAAATTGTACATTATTTTG+TGG + chr6_2:29234359-29234378 Msa0914610:three_prime_UTR 15.0%
!!! TAAATTGTACATTATTTTGT+GGG + chr6_2:29234360-29234379 Msa0914610:three_prime_UTR 15.0%
!! AAATTGGAAAAATTGAGAAA+TGG - chr6_2:29233247-29233266 None:intergenic 20.0%
!!! TATAGTTGATAAATCAAACA+TGG - chr6_2:29233279-29233298 None:intergenic 20.0%
!!! ACTACTCTTTTAATTTTTCA+TGG + chr6_2:29233404-29233423 Msa0914610:intron 20.0%
!!! TTTGTTATTTTCTTTTTCAG+GGG + chr6_2:29233849-29233868 Msa0914610:intron 20.0%
!! ACAAGAAAAGAAGAATAAAA+AGG - chr6_2:29234277-29234296 None:intergenic 20.0%
!! TTATCTAAGCTAAGAAAAAA+GGG + chr6_2:29234319-29234338 Msa0914610:three_prime_UTR 20.0%
!!! AAATTGTACATTATTTTGTG+GGG + chr6_2:29234361-29234380 Msa0914610:three_prime_UTR 20.0%
!! AAATTGGAAAAATTGAGAAA+TGG - chr6_2:29233247-29233266 None:intergenic 20.0%
!!! TATAGTTGATAAATCAAACA+TGG - chr6_2:29233279-29233298 None:intergenic 20.0%
!!! ACTACTCTTTTAATTTTTCA+TGG + chr6_2:29233404-29233423 Msa0914610:intron 20.0%
!!! TTTGTTATTTTCTTTTTCAG+GGG + chr6_2:29233849-29233868 Msa0914610:intron 20.0%
!! ACAAGAAAAGAAGAATAAAA+AGG - chr6_2:29234277-29234296 None:intergenic 20.0%
!! TTATCTAAGCTAAGAAAAAA+GGG + chr6_2:29234319-29234338 Msa0914610:three_prime_UTR 20.0%
!!! AAATTGTACATTATTTTGTG+GGG + chr6_2:29234361-29234380 Msa0914610:three_prime_UTR 20.0%
! AAACTGGCAACAAAAAAAAA+AGG - chr6_2:29233180-29233199 None:intergenic 25.0%
! TGATAAATCAAACATGGAAA+GGG - chr6_2:29233273-29233292 None:intergenic 25.0%
! TTGATAAATCAAACATGGAA+AGG - chr6_2:29233274-29233293 None:intergenic 25.0%
!! TTCCCTTTTGAATATTCAAT+TGG + chr6_2:29233379-29233398 Msa0914610:intron 25.0%
! CTCCAATTGAATATTCAAAA+GGG - chr6_2:29233384-29233403 None:intergenic 25.0%
! TCTCCAATTGAATATTCAAA+AGG - chr6_2:29233385-29233404 None:intergenic 25.0%
! ATTCAATATCGTATATACGA+TGG + chr6_2:29233707-29233726 Msa0914610:intron 25.0%
!! TCAAACAAAGTCACTTATTT+TGG + chr6_2:29233760-29233779 Msa0914610:intron 25.0%
!!! CAAACAAAGTCACTTATTTT+GGG + chr6_2:29233761-29233780 Msa0914610:intron 25.0%
! CTGTAATAGTAATAAGGATA+TGG - chr6_2:29234114-29234133 None:intergenic 25.0%
! ACAGTTCTGTAATAGTAATA+AGG - chr6_2:29234120-29234139 None:intergenic 25.0%
! TTATTACTATTACAGAACTG+TGG + chr6_2:29234119-29234138 Msa0914610:CDS 25.0%
!!! CTTTTCTTGTTCTTAGTTTT+TGG + chr6_2:29234287-29234306 Msa0914610:three_prime_UTR 25.0%
! CTTATCTAAGCTAAGAAAAA+AGG + chr6_2:29234318-29234337 Msa0914610:three_prime_UTR 25.0%
! AAACTGGCAACAAAAAAAAA+AGG - chr6_2:29233180-29233199 None:intergenic 25.0%
! TGATAAATCAAACATGGAAA+GGG - chr6_2:29233273-29233292 None:intergenic 25.0%
! TTGATAAATCAAACATGGAA+AGG - chr6_2:29233274-29233293 None:intergenic 25.0%
!! TTCCCTTTTGAATATTCAAT+TGG + chr6_2:29233379-29233398 Msa0914610:intron 25.0%
! CTCCAATTGAATATTCAAAA+GGG - chr6_2:29233384-29233403 None:intergenic 25.0%
! TCTCCAATTGAATATTCAAA+AGG - chr6_2:29233385-29233404 None:intergenic 25.0%
! ATTCAATATCGTATATACGA+TGG + chr6_2:29233707-29233726 Msa0914610:intron 25.0%
!! TCAAACAAAGTCACTTATTT+TGG + chr6_2:29233760-29233779 Msa0914610:intron 25.0%
!!! CAAACAAAGTCACTTATTTT+GGG + chr6_2:29233761-29233780 Msa0914610:intron 25.0%
! CTGTAATAGTAATAAGGATA+TGG - chr6_2:29234114-29234133 None:intergenic 25.0%
! ACAGTTCTGTAATAGTAATA+AGG - chr6_2:29234120-29234139 None:intergenic 25.0%
! TTATTACTATTACAGAACTG+TGG + chr6_2:29234119-29234138 Msa0914610:CDS 25.0%
!!! CTTTTCTTGTTCTTAGTTTT+TGG + chr6_2:29234287-29234306 Msa0914610:three_prime_UTR 25.0%
! CTTATCTAAGCTAAGAAAAA+AGG + chr6_2:29234318-29234337 Msa0914610:three_prime_UTR 25.0%
!! CAAAGTTTGAGATCAAGTTT+TGG + chr6_2:29233314-29233333 Msa0914610:intron 30.0%
TTGACAGAAAATAGTGCTAA+AGG + chr6_2:29233465-29233484 Msa0914610:intron 30.0%
GATCAAAAACTGACATTAGT+TGG + chr6_2:29233898-29233917 Msa0914610:CDS 30.0%
GAAAAAGGAGGAAAAAAAGA+AGG + chr6_2:29234005-29234024 Msa0914610:CDS 30.0%
AAAAAAGGGATGTTGAAGAA+GGG + chr6_2:29234333-29234352 Msa0914610:three_prime_UTR 30.0%
CTACTCTGTATTCAAAAATG+TGG + chr6_2:29234416-29234435 Msa0914610:three_prime_UTR 30.0%
!! CAAAGTTTGAGATCAAGTTT+TGG + chr6_2:29233314-29233333 Msa0914610:intron 30.0%
TTGACAGAAAATAGTGCTAA+AGG + chr6_2:29233465-29233484 Msa0914610:intron 30.0%
GATCAAAAACTGACATTAGT+TGG + chr6_2:29233898-29233917 Msa0914610:CDS 30.0%
GAAAAAGGAGGAAAAAAAGA+AGG + chr6_2:29234005-29234024 Msa0914610:CDS 30.0%
AAAAAAGGGATGTTGAAGAA+GGG + chr6_2:29234333-29234352 Msa0914610:three_prime_UTR 30.0%
CTACTCTGTATTCAAAAATG+TGG + chr6_2:29234416-29234435 Msa0914610:three_prime_UTR 30.0%
CTAGCTTCAAATCAATATGC+AGG + chr6_2:29233142-29233161 Msa0914610:exon 35.0%
TCATCATTAGGAGAGAAAAC+TGG - chr6_2:29233196-29233215 None:intergenic 35.0%
AACATGGAAAGGGACAAAAT+TGG - chr6_2:29233263-29233282 None:intergenic 35.0%
AGACATAGATACTGTTGATG+TGG + chr6_2:29233921-29233940 Msa0914610:CDS 35.0%
ATAGATACTGTTGATGTGGT+GGG + chr6_2:29233925-29233944 Msa0914610:CDS 35.0%
CATGCTGAAATAGTTTCAGT+TGG + chr6_2:29233967-29233986 Msa0914610:CDS 35.0%
! TTCCTCCTTTTTCTCTTCTT+TGG - chr6_2:29233998-29234017 None:intergenic 35.0%
!! TCTTTTGGGTCCTTTATCTT+TGG - chr6_2:29234036-29234055 None:intergenic 35.0%
AAAGATAAAGGACCCAAAAG+AGG + chr6_2:29234035-29234054 Msa0914610:CDS 35.0%
TAACAAATAACACACCCACT+TGG - chr6_2:29234153-29234172 None:intergenic 35.0%
TGAGAACATGAGAAGAAGTT+TGG + chr6_2:29234218-29234237 Msa0914610:three_prime_UTR 35.0%
GAGAACATGAGAAGAAGTTT+GGG + chr6_2:29234219-29234238 Msa0914610:three_prime_UTR 35.0%
AGAACATGAGAAGAAGTTTG+GGG + chr6_2:29234220-29234239 Msa0914610:three_prime_UTR 35.0%
GAAAAAAGGGATGTTGAAGA+AGG + chr6_2:29234332-29234351 Msa0914610:three_prime_UTR 35.0%
CTAGCTTCAAATCAATATGC+AGG + chr6_2:29233142-29233161 Msa0914610:exon 35.0%
TCATCATTAGGAGAGAAAAC+TGG - chr6_2:29233196-29233215 None:intergenic 35.0%
AACATGGAAAGGGACAAAAT+TGG - chr6_2:29233263-29233282 None:intergenic 35.0%
AGACATAGATACTGTTGATG+TGG + chr6_2:29233921-29233940 Msa0914610:CDS 35.0%
ATAGATACTGTTGATGTGGT+GGG + chr6_2:29233925-29233944 Msa0914610:CDS 35.0%
CATGCTGAAATAGTTTCAGT+TGG + chr6_2:29233967-29233986 Msa0914610:CDS 35.0%
! TTCCTCCTTTTTCTCTTCTT+TGG - chr6_2:29233998-29234017 None:intergenic 35.0%
!! TCTTTTGGGTCCTTTATCTT+TGG - chr6_2:29234036-29234055 None:intergenic 35.0%
AAAGATAAAGGACCCAAAAG+AGG + chr6_2:29234035-29234054 Msa0914610:CDS 35.0%
TAACAAATAACACACCCACT+TGG - chr6_2:29234153-29234172 None:intergenic 35.0%
TGAGAACATGAGAAGAAGTT+TGG + chr6_2:29234218-29234237 Msa0914610:three_prime_UTR 35.0%
GAGAACATGAGAAGAAGTTT+GGG + chr6_2:29234219-29234238 Msa0914610:three_prime_UTR 35.0%
AGAACATGAGAAGAAGTTTG+GGG + chr6_2:29234220-29234239 Msa0914610:three_prime_UTR 35.0%
GAAAAAAGGGATGTTGAAGA+AGG + chr6_2:29234332-29234351 Msa0914610:three_prime_UTR 35.0%
! TTGTGTGTGAGTGTGTTTTG+AGG - chr6_2:29233091-29233110 None:intergenic 40.0%
! GTGAGTAGTGTTGCTAAAGA+AGG - chr6_2:29233123-29233142 None:intergenic 40.0%
AAAGCCATGAAGACTGTATC+TGG + chr6_2:29233517-29233536 Msa0914610:CDS 40.0%
AAGACCAGATACAGTCTTCA+TGG - chr6_2:29233524-29233543 None:intergenic 40.0%
! AAGACTGTATCTGGTCTTTC+AGG + chr6_2:29233526-29233545 Msa0914610:intron 40.0%
! TGTATCTGGTCTTTCAGGTA+TGG + chr6_2:29233531-29233550 Msa0914610:intron 40.0%
CATAGATACTGTTGATGTGG+TGG + chr6_2:29233924-29233943 Msa0914610:CDS 40.0%
! TTGATGTGGTGGGAAAGTTA+AGG + chr6_2:29233935-29233954 Msa0914610:CDS 40.0%
ACCAGCCAAAGAAGAGAAAA+AGG + chr6_2:29233990-29234009 Msa0914610:CDS 40.0%
! TCCTTTTTCTCTTCTTTGGC+TGG - chr6_2:29233994-29234013 None:intergenic 40.0%
AGCCAAAGAAGAGAAAAAGG+AGG + chr6_2:29233993-29234012 Msa0914610:CDS 40.0%
GAAGGAAGAGCCAAAGATAA+AGG + chr6_2:29234023-29234042 Msa0914610:CDS 40.0%
AAAGGACCCAAAAGAGGAAT+TGG + chr6_2:29234041-29234060 Msa0914610:CDS 40.0%
! GATCAGCCAATTCCTCTTTT+GGG - chr6_2:29234050-29234069 None:intergenic 40.0%
! AGATCAGCCAATTCCTCTTT+TGG - chr6_2:29234051-29234070 None:intergenic 40.0%
! TTGTGTGTGAGTGTGTTTTG+AGG - chr6_2:29233091-29233110 None:intergenic 40.0%
! GTGAGTAGTGTTGCTAAAGA+AGG - chr6_2:29233123-29233142 None:intergenic 40.0%
AAAGCCATGAAGACTGTATC+TGG + chr6_2:29233517-29233536 Msa0914610:CDS 40.0%
AAGACCAGATACAGTCTTCA+TGG - chr6_2:29233524-29233543 None:intergenic 40.0%
! AAGACTGTATCTGGTCTTTC+AGG + chr6_2:29233526-29233545 Msa0914610:intron 40.0%
! TGTATCTGGTCTTTCAGGTA+TGG + chr6_2:29233531-29233550 Msa0914610:intron 40.0%
CATAGATACTGTTGATGTGG+TGG + chr6_2:29233924-29233943 Msa0914610:CDS 40.0%
! TTGATGTGGTGGGAAAGTTA+AGG + chr6_2:29233935-29233954 Msa0914610:CDS 40.0%
ACCAGCCAAAGAAGAGAAAA+AGG + chr6_2:29233990-29234009 Msa0914610:CDS 40.0%
! TCCTTTTTCTCTTCTTTGGC+TGG - chr6_2:29233994-29234013 None:intergenic 40.0%
AGCCAAAGAAGAGAAAAAGG+AGG + chr6_2:29233993-29234012 Msa0914610:CDS 40.0%
GAAGGAAGAGCCAAAGATAA+AGG + chr6_2:29234023-29234042 Msa0914610:CDS 40.0%
AAAGGACCCAAAAGAGGAAT+TGG + chr6_2:29234041-29234060 Msa0914610:CDS 40.0%
! GATCAGCCAATTCCTCTTTT+GGG - chr6_2:29234050-29234069 None:intergenic 40.0%
! AGATCAGCCAATTCCTCTTT+TGG - chr6_2:29234051-29234070 None:intergenic 40.0%
GTCTGTTTCAGTGGACATGA+AGG + chr6_2:29233876-29233895 Msa0914610:CDS 45.0%
GGAATTGGCTGATCTTGTGA+AGG + chr6_2:29234056-29234075 Msa0914610:CDS 45.0%
! CATGAGAAGAAGTTTGGGGT+TGG + chr6_2:29234224-29234243 Msa0914610:three_prime_UTR 45.0%
! AGAAGAAGTTTGGGGTTGGA+GGG + chr6_2:29234228-29234247 Msa0914610:three_prime_UTR 45.0%
GTCTGTTTCAGTGGACATGA+AGG + chr6_2:29233876-29233895 Msa0914610:CDS 45.0%
GGAATTGGCTGATCTTGTGA+AGG + chr6_2:29234056-29234075 Msa0914610:CDS 45.0%
! CATGAGAAGAAGTTTGGGGT+TGG + chr6_2:29234224-29234243 Msa0914610:three_prime_UTR 45.0%
! AGAAGAAGTTTGGGGTTGGA+GGG + chr6_2:29234228-29234247 Msa0914610:three_prime_UTR 45.0%
AGGGGTTGAGTCTGTTTCAG+TGG + chr6_2:29233867-29233886 Msa0914610:intron 50.0%
ACTGTGGAAGAGTCTCCAAG+TGG + chr6_2:29234135-29234154 Msa0914610:CDS 50.0%
CTGTGGAAGAGTCTCCAAGT+GGG + chr6_2:29234136-29234155 Msa0914610:CDS 50.0%
! GAGAAGAAGTTTGGGGTTGG+AGG + chr6_2:29234227-29234246 Msa0914610:three_prime_UTR 50.0%
AGGGGTTGAGTCTGTTTCAG+TGG + chr6_2:29233867-29233886 Msa0914610:intron 50.0%
ACTGTGGAAGAGTCTCCAAG+TGG + chr6_2:29234135-29234154 Msa0914610:CDS 50.0%
CTGTGGAAGAGTCTCCAAGT+GGG + chr6_2:29234136-29234155 Msa0914610:CDS 50.0%
! GAGAAGAAGTTTGGGGTTGG+AGG + chr6_2:29234227-29234246 Msa0914610:three_prime_UTR 50.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 29233073 29234453 29233073 ID=Msa0914610;Name=Msa0914610
chr6_2 mRNA 29233073 29234453 29233073 ID=Msa0914610-mRNA-1;Parent=Msa0914610;Name=Msa0914610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=85|0.5|0.66|1|1|1|3|280|125
chr6_2 exon 29233073 29233163 29233073 ID=Msa0914610-mRNA-1:exon:5290;Parent=Msa0914610-mRNA-1
chr6_2 exon 29233472 29233538 29233472 ID=Msa0914610-mRNA-1:exon:5291;Parent=Msa0914610-mRNA-1
chr6_2 exon 29233869 29234453 29233869 ID=Msa0914610-mRNA-1:exon:5292;Parent=Msa0914610-mRNA-1
chr6_2 five_prime_UTR 29233073 29233157 29233073 ID=Msa0914610-mRNA-1:five_prime_utr;Parent=Msa0914610-mRNA-1
chr6_2 CDS 29233158 29233163 29233158 ID=Msa0914610-mRNA-1:cds;Parent=Msa0914610-mRNA-1
chr6_2 CDS 29233472 29233538 29233472 ID=Msa0914610-mRNA-1:cds;Parent=Msa0914610-mRNA-1
chr6_2 CDS 29233869 29234173 29233869 ID=Msa0914610-mRNA-1:cds;Parent=Msa0914610-mRNA-1
chr6_2 three_prime_UTR 29234174 29234453 29234174 ID=Msa0914610-mRNA-1:three_prime_utr;Parent=Msa0914610-mRNA-1
Gene Sequence

>Msa0914610

ATGCAGAAAATAGTGCTAAAGGTAGAACTCTATGATGATAGAATCAAGAAAAAAGCCATGAAGACTGTATCTGGGGTTGAGTCTGTTTCAGTGGACATGAAGGATCAAAAACTGACATTAGTTGGAGACATAGATACTGTTGATGTGGTGGGAAAGTTAAGGAAACTATGTCATGCTGAAATAGTTTCAGTTGGACCAGCCAAAGAAGAGAAAAAGGAGGAAAAAAAGAAGGAAGAGCCAAAGATAAAGGACCCAAAAGAGGAATTGGCTGATCTTGTGAAGGCTTATGAAACATATTCTAATCAAATGAGACAACCATATCCTTATTACTATTACAGAACTGTGGAAGAGTCTCCAAGTGGGTGTGTTATTTGTTAA
Protein sequence

>Msa0914610

MQKIVLKVELYDDRIKKKAMKTVSGVESVSVDMKDQKLTLVGDIDTVDVVGKLRKLCHAEIVSVGPAKEEKKEEKKKEEPKIKDPKEELADLVKAYETYSNQMRQPYPYYYYRTVEESPSGCVIC*