AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1140230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140230 MtrunA17_Chr7g0221451 99.123 342 2 1 1 341 1 342 0.0 692
Msa1140230 MtrunA17_Chr1g0211061 67.147 347 77 9 1 341 1 316 5.38e-139 397
Msa1140230 MtrunA17_Chr8g0385751 36.232 345 155 12 36 341 43 361 7.73e-56 186
Msa1140230 MtrunA17_Chr1g0199044 29.730 148 64 5 41 148 56 203 9.79e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140230 AT2G33550.1 48.295 352 133 9 1 341 1 314 4.68e-96 288
Msa1140230 AT4G31270.1 33.913 115 70 1 39 153 17 125 8.38e-17 80.1
Msa1140230 AT2G35640.1 34.711 121 62 5 41 148 22 138 2.53e-12 67.4

Find 138 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAATTTCATTCACTTTA+TGG 0.011354 7_4:-11608430 Msa1140230:exon
TGAGATGTAGAGCCCGTTTC+TGG 0.174990 7_4:+11604974 None:intergenic
CCTTCACCTGTTCCTATATC+AGG 0.202031 7_4:-11607757 Msa1140230:intron
CGGAGGCACCGTCACAAAAT+AGG 0.204861 7_4:-11608491 Msa1140230:five_prime_UTR
ACAGTTCCATCATCGGAATT+AGG 0.210777 7_4:+11608390 None:intergenic
TAAACTGTTACTGCCATTAT+AGG 0.215864 7_4:-11604608 Msa1140230:three_prime_UTR
GCCATAAAGTGAATGAAATT+AGG 0.217948 7_4:+11608429 None:intergenic
TTGGACTAGGCAGGAGATTT+TGG 0.244674 7_4:-11608292 Msa1140230:CDS
AAACCGGGTCGGAATGGGTC+TGG 0.265216 7_4:-11608231 Msa1140230:CDS
GATAAAGGAGTGGGAGAGTC+AGG 0.272993 7_4:-11608088 Msa1140230:CDS
CAGTTCCATCATCGGAATTA+GGG 0.288650 7_4:+11608391 None:intergenic
TTCATATTTATGATAGTAAT+AGG 0.301580 7_4:-11607858 Msa1140230:CDS
GGCTGGTTGTTTCTCATTGT+TGG 0.301660 7_4:+11605003 None:intergenic
TTTCATTCACTTTATGGCTT+TGG 0.307015 7_4:-11608424 Msa1140230:exon
CCATAAAGTGAATGAAATTA+GGG 0.326616 7_4:+11608430 None:intergenic
GGTCGGAATGGGTCTGGGTT+TGG 0.340314 7_4:-11608225 Msa1140230:CDS
CTCTTCATTGCCGTCTCCAT+TGG 0.349024 7_4:+11604922 None:intergenic
TTCCTTCTCCTTGGCAGCCT+CGG 0.354622 7_4:+11607006 None:intergenic
CAAAATAACCAACCTGATAT+AGG 0.358309 7_4:+11607745 None:intergenic
AAGGAGATTAATAGAGAAAA+GGG 0.361069 7_4:+11608590 None:intergenic
TGCTGAAAGCCGGTTTAAAC+CGG 0.361320 7_4:-11608247 Msa1140230:CDS
GGCAGCATCGGTTGTTGTTC+CGG 0.362479 7_4:-11607929 Msa1140230:CDS
TCCATCCTCGCCACCGTTCA+CGG 0.362719 7_4:+11608338 None:intergenic
TCTTTCTAAAACGCCGTTAA+CGG 0.366762 7_4:-11608511 Msa1140230:five_prime_UTR
TGTGACGGTGCCTCCGTTAA+CGG 0.374926 7_4:+11608498 None:intergenic
GAAGGAGATTAATAGAGAAA+AGG 0.377518 7_4:+11608589 None:intergenic
TCCGATGATGGAACTGTTAA+CGG 0.379041 7_4:-11608384 Msa1140230:CDS
GGCTGCAGCTGTGGCAGCAT+CGG 0.381376 7_4:-11607941 Msa1140230:CDS
GAAGAAACCAACGCCCATTT+CGG 0.382737 7_4:+11608192 None:intergenic
GAGATGAAACGGAGTCGTTT+TGG 0.385379 7_4:-11608062 Msa1140230:CDS
TTGCAGTTTCATTCTGCTGC+TGG 0.394241 7_4:+11604798 None:intergenic
CTAGGACTATATACAACCTT+TGG 0.395087 7_4:-11604584 Msa1140230:three_prime_UTR
AACCGGGTCGGAATGGGTCT+GGG 0.399338 7_4:-11608230 Msa1140230:CDS
CCCGTTTCTGGATTCGAGGC+TGG 0.399420 7_4:+11604986 None:intergenic
GTAAGAAACACGGTGTGAAC+CGG 0.402207 7_4:-11608164 Msa1140230:CDS
TAGTCAATTAATTGATGTAT+TGG 0.403614 7_4:-11604885 Msa1140230:CDS
TTGGTTCGAGTGAACCGAAA+TGG 0.407548 7_4:-11608206 Msa1140230:CDS
GTTTAATAATACTAAAAGTA+AGG 0.413373 7_4:+11604626 None:intergenic
CCATCATCGGAATTAGGGTT+TGG 0.414944 7_4:+11608396 None:intergenic
CATTCCGACCCGGTTTAAAC+CGG 0.422032 7_4:+11608238 None:intergenic
CGGAGATTATAAGAAGATAA+AGG 0.430532 7_4:-11608103 Msa1140230:CDS
ATATAGTCCTAGTCCTATAA+TGG 0.431571 7_4:+11604595 None:intergenic
CTTGAGCATTTCCTTCTCCT+TGG 0.433995 7_4:+11606997 None:intergenic
CTTTATCTTCTTATAATCTC+CGG 0.440339 7_4:+11608104 None:intergenic
GTAATAGTGTACATACCATT+TGG 0.445594 7_4:-11604694 Msa1140230:three_prime_UTR
GGAGGCACCGTCACAAAATA+GGG 0.446436 7_4:-11608490 Msa1140230:five_prime_UTR
GATAAGCTTGCAAATGCTCT+TGG 0.446812 7_4:-11604755 Msa1140230:CDS
GCCGTCGATGGCGGTGGCAG+CGG 0.449844 7_4:-11607962 Msa1140230:CDS
CGGTTTAAACCGGGTCGGAA+TGG 0.460221 7_4:-11608237 Msa1140230:CDS
AGAGACGGTTGGAGGGGATG+AGG 0.467759 7_4:-11607884 Msa1140230:CDS
AGGAAAGTGAGTGGTGAGGA+TGG 0.468097 7_4:-11607838 Msa1140230:CDS
CATCTCAAGGGGAACGTAAG+AGG 0.469277 7_4:-11604958 Msa1140230:CDS
GGTTTAAACCGGGTCGGAAT+GGG 0.469821 7_4:-11608236 Msa1140230:CDS
GTCCGTGTCGGTTTCAGAGA+CGG 0.474170 7_4:-11607899 Msa1140230:CDS
GCCGCTGCCACCGCCATCGA+CGG 0.475194 7_4:+11607961 None:intergenic
CCAAACCCTAATTCCGATGA+TGG 0.478565 7_4:-11608396 Msa1140230:CDS
TGGTTCGAGTGAACCGAAAT+GGG 0.480374 7_4:-11608205 Msa1140230:CDS
AACCAACCTGATATAGGAAC+AGG 0.482028 7_4:+11607751 None:intergenic
ACCAGCCTCGAATCCAGAAA+CGG 0.487810 7_4:-11604987 Msa1140230:CDS
CACCGCTTCCTACACTGAAT+CGG 0.488900 7_4:+11608138 None:intergenic
CCACTACTGATGACTCCAAA+TGG 0.490195 7_4:+11604679 None:intergenic
GCCGTGAACGGTGGCGAGGA+TGG 0.493423 7_4:-11608339 Msa1140230:CDS
GGTGGCAGCGGCTGCAGCTG+TGG 0.495633 7_4:-11607950 Msa1140230:CDS
CTCGCCACCGTTCACGGCGG+AGG 0.497849 7_4:+11608344 None:intergenic
ACCGACACGGACACATTCAC+CGG 0.507822 7_4:+11607910 None:intergenic
TAGGACTATATACAACCTTT+GGG 0.508090 7_4:-11604583 Msa1140230:three_prime_UTR
CGAGGCTGCCACGTTGGACT+AGG 0.508267 7_4:-11608305 Msa1140230:CDS
GGAATGATTTGAGGAGAGAG+AGG 0.508729 7_4:-11608032 Msa1140230:CDS
GAGTCAGGTGAGAGATGAAA+CGG 0.509162 7_4:-11608073 Msa1140230:CDS
CCACTCCTCCGAGGCTGCCA+AGG 0.511072 7_4:-11607014 Msa1140230:CDS
GGTTGATGAGGAATGATTTG+AGG 0.515241 7_4:-11608041 Msa1140230:CDS
CCAGCCTCGAATCCAGAAAC+GGG 0.515344 7_4:-11604986 Msa1140230:CDS
TCGGTTTCAGAGACGGTTGG+AGG 0.516269 7_4:-11607892 Msa1140230:CDS
TAAGAAACACGGTGTGAACC+GGG 0.516907 7_4:-11608163 Msa1140230:CDS
CTCCGAGGCTGCCAAGGAGA+AGG 0.523413 7_4:-11607008 Msa1140230:CDS
TGATTCGCCGTCGATGGCGG+TGG 0.527873 7_4:-11607968 Msa1140230:CDS
AGGAGAGAGAGGAAATTGCC+TGG 0.529803 7_4:-11608021 Msa1140230:CDS
AGAGCCCGTTTCTGGATTCG+AGG 0.531658 7_4:+11604982 None:intergenic
ACCGTTAACAGTTCCATCAT+CGG 0.535210 7_4:+11608383 None:intergenic
GATACTTGATTCGCCGTCGA+TGG 0.535395 7_4:-11607974 Msa1140230:CDS
TTATAAGAAGATAAAGGAGT+GGG 0.535976 7_4:-11608097 Msa1140230:CDS
GAAACGGGCTCTACATCTCA+AGG 0.544821 7_4:-11604971 Msa1140230:CDS
CGGTTTCAGAGACGGTTGGA+GGG 0.546057 7_4:-11607891 Msa1140230:CDS
CCACCGTTCACGGCGGAGGA+CGG 0.551882 7_4:+11608348 None:intergenic
CTTCTCCTTGGCAGCCTCGG+AGG 0.552038 7_4:+11607009 None:intergenic
ATTATAAGAAGATAAAGGAG+TGG 0.554162 7_4:-11608098 Msa1140230:CDS
AAGGGGAACGTAAGAGGAAG+CGG 0.555390 7_4:-11604952 Msa1140230:CDS
GAAAGAGTGATGCTGAAAGC+CGG 0.563160 7_4:-11608257 Msa1140230:CDS
CCGTCCTCCGCCGTGAACGG+TGG 0.563465 7_4:-11608348 Msa1140230:CDS
AACCCAGACCCATTCCGACC+CGG 0.563556 7_4:+11608228 None:intergenic
TTTAATAATACTAAAAGTAA+GGG 0.564510 7_4:+11604627 None:intergenic
CCATTTGGAGTCATCAGTAG+TGG 0.565402 7_4:-11604679 Msa1140230:three_prime_UTR
TCCTACACTGAATCGGACCC+CGG 0.566040 7_4:+11608145 None:intergenic
AGGAAGCGGTTCGCAACCAA+TGG 0.566583 7_4:-11604938 Msa1140230:CDS
TTCTAAAACGCCGTTAACGG+AGG 0.566780 7_4:-11608508 Msa1140230:five_prime_UTR
GACGGTTGGAGGGGATGAGG+AGG 0.568399 7_4:-11607881 Msa1140230:CDS
CCACCGTCCTCCGCCGTGAA+CGG 0.574662 7_4:-11608351 Msa1140230:CDS
GGTTTCAGAGACGGTTGGAG+GGG 0.575314 7_4:-11607890 Msa1140230:CDS
CAACGGCGAGGCTGCCACGT+TGG 0.578495 7_4:-11608311 Msa1140230:CDS
CGATTCAGTGTAGGAAGCGG+TGG 0.579523 7_4:-11608137 Msa1140230:CDS
GAGTGAACCGAAATGGGCGT+TGG 0.586856 7_4:-11608199 Msa1140230:CDS
CTCCGCCGTGAACGGTGGCG+AGG 0.588326 7_4:-11608343 Msa1140230:CDS
GTGTCGGTTTCAGAGACGGT+TGG 0.589727 7_4:-11607895 Msa1140230:CDS
GTCCGATTCAGTGTAGGAAG+CGG 0.593847 7_4:-11608140 Msa1140230:CDS
GCTGAAAGCCGGTTTAAACC+GGG 0.593885 7_4:-11608246 Msa1140230:CDS
TGATAAGCTGTAGTGCAAGA+AGG 0.594772 7_4:-11604723 Msa1140230:exon
AAGCGGTGGAGCAACCTCGC+CGG 0.597218 7_4:-11608123 Msa1140230:CDS
TCCGGTGAATGTGTCCGTGT+CGG 0.602281 7_4:-11607911 Msa1140230:CDS
CAATGGAGACGGCAATGAAG+AGG 0.604269 7_4:-11604921 Msa1140230:CDS
GGAAAGTGAGTGGTGAGGAT+GGG 0.605368 7_4:-11607837 Msa1140230:CDS
GTTACTGCCATTATAGGACT+AGG 0.607869 7_4:-11604602 Msa1140230:three_prime_UTR
TAATAGGAAAGTGAGTGGTG+AGG 0.611943 7_4:-11607842 Msa1140230:CDS
GGAGAGAGAGGAAATTGCCT+GGG 0.612198 7_4:-11608020 Msa1140230:CDS
ACTTGATTCGCCGTCGATGG+CGG 0.613112 7_4:-11607971 Msa1140230:CDS
CGGTTCGCAACCAATGGAGA+CGG 0.613454 7_4:-11604932 Msa1140230:CDS
CCGTTCACGGCGGAGGACGG+TGG 0.619410 7_4:+11608351 None:intergenic
AAACGGGCTCTACATCTCAA+GGG 0.623139 7_4:-11604970 Msa1140230:CDS
CAAGGAGAAGGAAATGCTCA+AGG 0.623679 7_4:-11606996 Msa1140230:intron
CATTTGGAGTCATCAGTAGT+GGG 0.625979 7_4:-11604678 Msa1140230:three_prime_UTR
GATGCTAAGTGAACAACTAG+AGG 0.629368 7_4:-11604849 Msa1140230:CDS
GATGGAACTGTTAACGGTAA+CGG 0.629880 7_4:-11608378 Msa1140230:CDS
AACCGTCTCTGAAACCGACA+CGG 0.638183 7_4:+11607897 None:intergenic
CCTGATATAGGAACAGGTGA+AGG 0.639915 7_4:+11607757 None:intergenic
AACGGGCTCTACATCTCAAG+GGG 0.641332 7_4:-11604969 Msa1140230:CDS
ATAAATGCAGTAACTCCCAA+AGG 0.641377 7_4:+11604568 None:intergenic
TGGAGACGGCAATGAAGAGG+AGG 0.641529 7_4:-11604918 Msa1140230:CDS
TCTTCGTATTGTAAGAAACA+CGG 0.643626 7_4:-11608174 Msa1140230:CDS
GATAGTAATAGGAAAGTGAG+TGG 0.654357 7_4:-11607847 Msa1140230:CDS
ACCTCCTTATCAAAATACCC+AGG 0.654771 7_4:+11608003 None:intergenic
TGGCGAGGATGGAAAACCAA+CGG 0.670801 7_4:-11608328 Msa1140230:CDS
TCTTCTTATAATCTCCGGCG+AGG 0.675112 7_4:+11608109 None:intergenic
ACCGGGGTCCGATTCAGTGT+AGG 0.687179 7_4:-11608146 Msa1140230:CDS
AAGAAACACGGTGTGAACCG+GGG 0.696776 7_4:-11608162 Msa1140230:CDS
AAAGCCGGTTTAAACCGGGT+CGG 0.699962 7_4:-11608242 Msa1140230:CDS
AGGATGGAAAACCAACGGCG+AGG 0.725001 7_4:-11608323 Msa1140230:CDS
ATCTCCTGCCTAGTCCAACG+TGG 0.727740 7_4:+11608297 None:intergenic
CAGTTTCTACCACTCCTCCG+AGG 0.732051 7_4:-11607023 Msa1140230:CDS
ATCCTCGCCACCGTTCACGG+CGG 0.733386 7_4:+11608341 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATATATATTTTTTTATGTT+AGG - chr7_4:11606682-11606701 Msa1140230:intron 10.0%
!! TTTAATAATACTAAAAGTAA+GGG + chr7_4:11608552-11608571 None:intergenic 10.0%
!! AGAATGAAAAAGAAAAAAAA+GGG + chr7_4:11604648-11604667 None:intergenic 15.0%
!! AAGAATGAAAAAGAAAAAAA+AGG + chr7_4:11604649-11604668 None:intergenic 15.0%
!! TTCATATTTATGATAGTAAT+AGG - chr7_4:11605318-11605337 Msa1140230:intron 15.0%
!!! TTTTAGATTGAAATTGTTTT+CGG - chr7_4:11605532-11605551 Msa1140230:intron 15.0%
!! ATTTAAATAATTACAGCTAT+TGG - chr7_4:11605644-11605663 Msa1140230:intron 15.0%
!! TTTAAATAATTACAGCTATT+GGG - chr7_4:11605645-11605664 Msa1140230:intron 15.0%
!! TATATAATAGTGTTAATTAC+AGG - chr7_4:11605855-11605874 Msa1140230:intron 15.0%
!! GATTTCAATCATTAAATTTA+TGG + chr7_4:11606552-11606571 None:intergenic 15.0%
!! AAATTTAATGATTGAAATCA+TGG - chr7_4:11606553-11606572 Msa1140230:intron 15.0%
!! GAATTAACAAAATTTCAAAA+TGG - chr7_4:11607525-11607544 Msa1140230:intron 15.0%
!! GTTTAATAATACTAAAAGTA+AGG + chr7_4:11608553-11608572 None:intergenic 15.0%
!!! TTTTTTCTTCTTAAGAATGA+AGG + chr7_4:11604608-11604627 None:intergenic 20.0%
!! ATAAGCTTATACAATCAAAA+AGG + chr7_4:11605476-11605495 None:intergenic 20.0%
!!! TTTAGATTGAAATTGTTTTC+GGG - chr7_4:11605533-11605552 Msa1140230:intron 20.0%
!! TTAAATAATTACAGCTATTG+GGG - chr7_4:11605646-11605665 Msa1140230:intron 20.0%
!!! CATTTTTTTTGAATAATCAC+AGG - chr7_4:11605738-11605757 Msa1140230:intron 20.0%
!! AATAAAAAAACAGTACAGTA+TGG + chr7_4:11605993-11606012 None:intergenic 20.0%
!!! AGTGTTTTATGTTTTAAAGT+TGG - chr7_4:11606028-11606047 Msa1140230:intron 20.0%
!!! TTTTATGTTTTAAAGTTGGA+GGG - chr7_4:11606032-11606051 Msa1140230:intron 20.0%
!!! GTTTTAATACTAGAATGATA+TGG - chr7_4:11606251-11606270 Msa1140230:intron 20.0%
!! GATAAATATATGATTTACCA+CGG + chr7_4:11606777-11606796 None:intergenic 20.0%
!! AACAAACATAAAACAAATGA+TGG + chr7_4:11607065-11607084 None:intergenic 20.0%
!!! TTTTTCTGATATTGCATTTT+TGG - chr7_4:11607181-11607200 Msa1140230:intron 20.0%
!!! TTTTCTGATATTGCATTTTT+GGG - chr7_4:11607182-11607201 Msa1140230:intron 20.0%
!! AATTTCAGAAACGAAATTAA+CGG + chr7_4:11607576-11607595 None:intergenic 20.0%
!!! ATATTATCACTTTTCATGAA+TGG - chr7_4:11607947-11607966 Msa1140230:CDS 20.0%
!!! ATACATTCCTTTACTTTTAT+AGG - chr7_4:11608148-11608167 Msa1140230:CDS 20.0%
!! TAGTCAATTAATTGATGTAT+TGG - chr7_4:11608291-11608310 Msa1140230:CDS 20.0%
! AAGGAGATTAATAGAGAAAA+GGG + chr7_4:11604589-11604608 None:intergenic 25.0%
! CCATAAAGTGAATGAAATTA+GGG + chr7_4:11604749-11604768 None:intergenic 25.0%
! CTTTATCTTCTTATAATCTC+CGG + chr7_4:11605075-11605094 None:intergenic 25.0%
! ATTATAAGAAGATAAAGGAG+TGG - chr7_4:11605078-11605097 Msa1140230:intron 25.0%
! TTATAAGAAGATAAAGGAGT+GGG - chr7_4:11605079-11605098 Msa1140230:intron 25.0%
!! TTAGATTGAAATTGTTTTCG+GGG - chr7_4:11605534-11605553 Msa1140230:intron 25.0%
! TAAATAATTACAGCTATTGG+GGG - chr7_4:11605647-11605666 Msa1140230:intron 25.0%
! TAGTGTTAATTACAGGTATT+AGG - chr7_4:11605862-11605881 Msa1140230:intron 25.0%
! AGTGTTAATTACAGGTATTA+GGG - chr7_4:11605863-11605882 Msa1140230:intron 25.0%
! TTGAAACACTGCAATTTAAT+AGG + chr7_4:11605950-11605969 None:intergenic 25.0%
!!! GTTTTATGTTTTAAAGTTGG+AGG - chr7_4:11606031-11606050 Msa1140230:intron 25.0%
! TTAATAATCAAGGACAACAA+CGG + chr7_4:11606102-11606121 None:intergenic 25.0%
! AAGGTAAATAGTGTTCTTAA+TGG - chr7_4:11606199-11606218 Msa1140230:intron 25.0%
! TCGTTCTTATGTGATATATT+TGG - chr7_4:11606300-11606319 Msa1140230:intron 25.0%
! CGTTCTTATGTGATATATTT+GGG - chr7_4:11606301-11606320 Msa1140230:intron 25.0%
!!! AAATCCAAGGTTTTAAATCT+TGG - chr7_4:11606578-11606597 Msa1140230:intron 25.0%
! CTCTCAAATCATAATAATAC+TGG + chr7_4:11606801-11606820 None:intergenic 25.0%
! TGACCTTATATTTGTTTGTT+TGG - chr7_4:11606824-11606843 Msa1140230:intron 25.0%
! TGTCCAAACAAACAAATATA+AGG + chr7_4:11606830-11606849 None:intergenic 25.0%
! TATATTTGTTTGTTTGGACA+TGG - chr7_4:11606830-11606849 Msa1140230:intron 25.0%
! TATAATAGGTACTAAGTTTG+GGG + chr7_4:11606895-11606914 None:intergenic 25.0%
! CTATAATAGGTACTAAGTTT+GGG + chr7_4:11606896-11606915 None:intergenic 25.0%
! ACTATAATAGGTACTAAGTT+TGG + chr7_4:11606897-11606916 None:intergenic 25.0%
!! AGAAGATAGCTTTCATATTT+TGG + chr7_4:11606948-11606967 None:intergenic 25.0%
! AATTAACCAAAATTCATCTG+CGG + chr7_4:11607121-11607140 None:intergenic 25.0%
! ATCAAATTAACTTAGAGTTG+AGG + chr7_4:11607501-11607520 None:intergenic 25.0%
! TGAACTTCCTTATGAATAAA+TGG - chr7_4:11607772-11607791 Msa1140230:CDS 25.0%
! AAGTTGTAAGTACTATGTAA+TGG + chr7_4:11608007-11608026 None:intergenic 25.0%
! AGTACATATAATAGGCATAA+AGG - chr7_4:11608058-11608077 Msa1140230:CDS 25.0%
! ATTGATGTATTGGAGAAAAA+TGG - chr7_4:11608301-11608320 Msa1140230:CDS 25.0%
! TTGATGTATTGGAGAAAAAT+GGG - chr7_4:11608302-11608321 Msa1140230:CDS 25.0%
! TTTGACCAAAAAATAATGCA+GGG + chr7_4:11608525-11608544 None:intergenic 25.0%
! ATTTGACCAAAAAATAATGC+AGG + chr7_4:11608526-11608545 None:intergenic 25.0%
GAAGGAGATTAATAGAGAAA+AGG + chr7_4:11604590-11604609 None:intergenic 30.0%
CCCTAATTTCATTCACTTTA+TGG - chr7_4:11604746-11604765 Msa1140230:CDS 30.0%
GCCATAAAGTGAATGAAATT+AGG + chr7_4:11604750-11604769 None:intergenic 30.0%
TTTCATTCACTTTATGGCTT+TGG - chr7_4:11604752-11604771 Msa1140230:CDS 30.0%
!!! GAGATTTTGGTTTTGATACA+GGG - chr7_4:11604897-11604916 Msa1140230:CDS 30.0%
TCTTCGTATTGTAAGAAACA+CGG - chr7_4:11605002-11605021 Msa1140230:CDS 30.0%
CGGAGATTATAAGAAGATAA+AGG - chr7_4:11605073-11605092 Msa1140230:intron 30.0%
!! GTTGTTTTCTGATTTTGAGA+AGG - chr7_4:11605361-11605380 Msa1140230:intron 30.0%
CAAAATAACCAACCTGATAT+AGG + chr7_4:11605434-11605453 None:intergenic 30.0%
!! AGGTTGGTTATTTTGTTTCA+TGG - chr7_4:11605439-11605458 Msa1140230:intron 30.0%
GTCATGTGATTACATTCAAT+CGG - chr7_4:11605614-11605633 Msa1140230:intron 30.0%
AACACTGCAATTTAATAGGA+AGG + chr7_4:11605946-11605965 None:intergenic 30.0%
! GACAACATTGGTTAAAACTA+TGG + chr7_4:11606339-11606358 None:intergenic 30.0%
! AAAACTATTGTTATCGACTG+CGG + chr7_4:11606498-11606517 None:intergenic 30.0%
TGAAATCATGGATAAATCCA+AGG - chr7_4:11606565-11606584 Msa1140230:intron 30.0%
! AAGACCAAGATTTAAAACCT+TGG + chr7_4:11606585-11606604 None:intergenic 30.0%
TGTTGTGATTCTTAGTATTG+CGG - chr7_4:11606604-11606623 Msa1140230:intron 30.0%
CATTGCACAAAGCTATTAAT+TGG + chr7_4:11606751-11606770 None:intergenic 30.0%
! TGAAGCACTTTGACTATAAT+AGG + chr7_4:11606909-11606928 None:intergenic 30.0%
! GTAGCACAATTTACCATTTT+TGG + chr7_4:11606988-11607007 None:intergenic 30.0%
!!! AGGATTTTAGCTTATTTGAG+AGG + chr7_4:11607018-11607037 None:intergenic 30.0%
GTAGCATCGTAAACAATAAA+AGG + chr7_4:11607089-11607108 None:intergenic 30.0%
!!! GCAGATGAATTTTGGTTAAT+TGG - chr7_4:11607120-11607139 Msa1140230:intron 30.0%
TGTAGAATAGAATAAGCAAC+TGG + chr7_4:11607158-11607177 None:intergenic 30.0%
! TTTGGGATTTCAATAATGCT+AGG - chr7_4:11607199-11607218 Msa1140230:intron 30.0%
! CGTGATTGTTCATTTAAGAT+TGG - chr7_4:11607298-11607317 Msa1140230:intron 30.0%
TAAAGGAGTTGAGGAATTAA+AGG + chr7_4:11607452-11607471 None:intergenic 30.0%
! TCTCTAACAACAGTTTTCTT+TGG - chr7_4:11607548-11607567 Msa1140230:intron 30.0%
!! TTTCGTTTCTGAAATTGTCT+CGG - chr7_4:11607580-11607599 Msa1140230:intron 30.0%
CAATTTAACCCTAAGATTGA+AGG + chr7_4:11607685-11607704 None:intergenic 30.0%
CTTCAATCTTAGGGTTAAAT+TGG - chr7_4:11607683-11607702 Msa1140230:intron 30.0%
GTACACACCATTTATTCATA+AGG + chr7_4:11607782-11607801 None:intergenic 30.0%
ATGTATAAGTAGCACTTCTA+GGG + chr7_4:11607824-11607843 None:intergenic 30.0%
TATGTATAAGTAGCACTTCT+AGG + chr7_4:11607825-11607844 None:intergenic 30.0%
GTTGCTCATATTATTTGAGT+AGG + chr7_4:11607914-11607933 None:intergenic 30.0%
CTATGTCGAGTACATATAAT+AGG - chr7_4:11608050-11608069 Msa1140230:CDS 30.0%
CATATAATAGGCATAAAGGT+AGG - chr7_4:11608062-11608081 Msa1140230:CDS 30.0%
GTTGGTACCTATAAAAGTAA+AGG + chr7_4:11608158-11608177 None:intergenic 30.0%
! TCAGAACATCAATTTTCAGT+TGG - chr7_4:11608351-11608370 Msa1140230:CDS 30.0%
GTAATAGTGTACATACCATT+TGG - chr7_4:11608482-11608501 Msa1140230:five_prime_UTR 30.0%
TAAACTGTTACTGCCATTAT+AGG - chr7_4:11608568-11608587 Msa1140230:five_prime_UTR 30.0%
ATATAGTCCTAGTCCTATAA+TGG + chr7_4:11608584-11608603 None:intergenic 30.0%
TAGGACTATATACAACCTTT+GGG - chr7_4:11608593-11608612 Msa1140230:five_prime_UTR 30.0%
!! TCTTTCTAAAACGCCGTTAA+CGG - chr7_4:11604665-11604684 Msa1140230:three_prime_UTR 35.0%
!!! GGAGATTTTGGTTTTGATAC+AGG - chr7_4:11604896-11604915 Msa1140230:CDS 35.0%
!!! ATTGCCTGGGTATTTTGATA+AGG - chr7_4:11605169-11605188 Msa1140230:intron 35.0%
GATAGTAATAGGAAAGTGAG+TGG - chr7_4:11605329-11605348 Msa1140230:intron 35.0%
!! TTCTGATTTTGAGAAGGATG+AGG - chr7_4:11605367-11605386 Msa1140230:intron 35.0%
!! TTTTGAGAAGGATGAGGTTT+TGG - chr7_4:11605373-11605392 Msa1140230:intron 35.0%
GAATGTAATCACATGACATG+TGG + chr7_4:11605611-11605630 None:intergenic 35.0%
ACATGTTTGATGTTTGACGT+CGG + chr7_4:11605697-11605716 None:intergenic 35.0%
TTGAATAATCACAGGTTTCG+AGG - chr7_4:11605746-11605765 Msa1140230:intron 35.0%
! TTCAATGTCACTAGCATTGA+TGG - chr7_4:11605965-11605984 Msa1140230:intron 35.0%
!!! TGTTTTAAAGTTGGAGGGTT+TGG - chr7_4:11606037-11606056 Msa1140230:intron 35.0%
!!! GTTTTAAAGTTGGAGGGTTT+GGG - chr7_4:11606038-11606057 Msa1140230:intron 35.0%
TGGCAGATATTTGACAACAT+TGG + chr7_4:11606351-11606370 None:intergenic 35.0%
ATGTTGTCAAATATCTGCCA+TGG - chr7_4:11606351-11606370 Msa1140230:intron 35.0%
CATCCTTCACAAATTGATCA+TGG + chr7_4:11606408-11606427 None:intergenic 35.0%
CATGATCAATTTGTGAAGGA+TGG - chr7_4:11606406-11606425 Msa1140230:intron 35.0%
TGAGTCATCATAAAACACCA+TGG + chr7_4:11606437-11606456 None:intergenic 35.0%
GACTCATAATCGCAGATTTA+TGG - chr7_4:11606451-11606470 Msa1140230:intron 35.0%
TGCACTAGTGTGTCAAAAAA+AGG + chr7_4:11606728-11606747 None:intergenic 35.0%
TCATCTTGGTCAGATGAATA+GGG + chr7_4:11606863-11606882 None:intergenic 35.0%
ATCATCTTGGTCAGATGAAT+AGG + chr7_4:11606864-11606883 None:intergenic 35.0%
!! CCATTTTTGGAGACAAAGAA+AGG + chr7_4:11606975-11606994 None:intergenic 35.0%
CCTTTCTTTGTCTCCAAAAA+TGG - chr7_4:11606972-11606991 Msa1140230:intron 35.0%
! TTCTTACCGCAGATGAATTT+TGG - chr7_4:11607112-11607131 Msa1140230:intron 35.0%
AATAATGCTAGGACACACAT+AGG - chr7_4:11607210-11607229 Msa1140230:intron 35.0%
TTAAATGAACAATCACGCCT+TGG + chr7_4:11607295-11607314 None:intergenic 35.0%
AGTCCTGAAACTGTAAATGT+TGG - chr7_4:11607337-11607356 Msa1140230:intron 35.0%
GTCCTGAAACTGTAAATGTT+GGG - chr7_4:11607338-11607357 Msa1140230:intron 35.0%
TACCCAACATTTACAGTTTC+AGG + chr7_4:11607343-11607362 None:intergenic 35.0%
TCATGATTCAAGTCATGAGA+AGG + chr7_4:11607428-11607447 None:intergenic 35.0%
TTAAGGGATTAAAGGAGTTG+AGG + chr7_4:11607461-11607480 None:intergenic 35.0%
! GGTTTGAGTTAAGGGATTAA+AGG + chr7_4:11607469-11607488 None:intergenic 35.0%
!! GCTCAATTGGTTTGAGTTAA+GGG + chr7_4:11607477-11607496 None:intergenic 35.0%
!! AGCTCAATTGGTTTGAGTTA+AGG + chr7_4:11607478-11607497 None:intergenic 35.0%
TGTTAATCCGAGACAATTTC+AGG + chr7_4:11607624-11607643 None:intergenic 35.0%
AGCCTAAATCCTTCAATCTT+AGG - chr7_4:11607673-11607692 Msa1140230:intron 35.0%
GCCTAAATCCTTCAATCTTA+GGG - chr7_4:11607674-11607693 Msa1140230:intron 35.0%
ACCCTAAGATTGAAGGATTT+AGG + chr7_4:11607678-11607697 None:intergenic 35.0%
! TCTCCTTGTGACTTTTCTTT+AGG - chr7_4:11607873-11607892 Msa1140230:CDS 35.0%
! CTCCTTGTGACTTTTCTTTA+GGG - chr7_4:11607874-11607893 Msa1140230:CDS 35.0%
! TCCTTGTGACTTTTCTTTAG+GGG - chr7_4:11607875-11607894 Msa1140230:CDS 35.0%
ATTTGAGTAGGCTTAGATTG+TGG + chr7_4:11607902-11607921 None:intergenic 35.0%
AGGCATAAAGGTAGGATTTA+AGG - chr7_4:11608070-11608089 Msa1140230:CDS 35.0%
! AAAGGTAGGATTTAAGGTTC+TGG - chr7_4:11608076-11608095 Msa1140230:CDS 35.0%
CTAGGACTATATACAACCTT+TGG - chr7_4:11608592-11608611 Msa1140230:five_prime_UTR 35.0%
! CGTGTTTCCCTATTTTGTGA+CGG + chr7_4:11604696-11604715 None:intergenic 40.0%
CAGTTCCATCATCGGAATTA+GGG + chr7_4:11604788-11604807 None:intergenic 40.0%
ACAGTTCCATCATCGGAATT+AGG + chr7_4:11604789-11604808 None:intergenic 40.0%
!! TCCGATGATGGAACTGTTAA+CGG - chr7_4:11604792-11604811 Msa1140230:CDS 40.0%
ACCGTTAACAGTTCCATCAT+CGG + chr7_4:11604796-11604815 None:intergenic 40.0%
GATGGAACTGTTAACGGTAA+CGG - chr7_4:11604798-11604817 Msa1140230:CDS 40.0%
!! GGTTGATGAGGAATGATTTG+AGG - chr7_4:11605135-11605154 Msa1140230:intron 40.0%
ACCTCCTTATCAAAATACCC+AGG + chr7_4:11605176-11605195 None:intergenic 40.0%
TAATAGGAAAGTGAGTGGTG+AGG - chr7_4:11605334-11605353 Msa1140230:intron 40.0%
AACCAACCTGATATAGGAAC+AGG + chr7_4:11605428-11605447 None:intergenic 40.0%
! ATTAGGGTTAGTGTCGAATC+TGG - chr7_4:11605879-11605898 Msa1140230:intron 40.0%
! TTAGTGTCGAATCTGGTGTT+AGG - chr7_4:11605886-11605905 Msa1140230:intron 40.0%
TTGTCAAATATCTGCCATGG+CGG - chr7_4:11606354-11606373 Msa1140230:intron 40.0%
CTGCCATGATCAATTTGTGA+AGG - chr7_4:11606402-11606421 Msa1140230:intron 40.0%
AGATTTATGGCTTTCTGCCA+TGG - chr7_4:11606464-11606483 Msa1140230:intron 40.0%
AATCGCAGTTGAATGTGATG+TGG - chr7_4:11606629-11606648 Msa1140230:intron 40.0%
TGTTTGTTTGGACATGGCTT+AGG - chr7_4:11606836-11606855 Msa1140230:intron 40.0%
TCTGACCAAGATGATGTGAT+AGG - chr7_4:11606869-11606888 Msa1140230:intron 40.0%
GAAAGCAAGCTGTCTCATAA+AGG + chr7_4:11607038-11607057 None:intergenic 40.0%
TCGCACAAAGGTTGTAAACA+GGG + chr7_4:11607249-11607268 None:intergenic 40.0%
TTCGCACAAAGGTTGTAAAC+AGG + chr7_4:11607250-11607269 None:intergenic 40.0%
TTTACAACCTTTGTGCGAAC+AGG - chr7_4:11607251-11607270 Msa1140230:intron 40.0%
CTCTATAGGATACACATCCA+AGG - chr7_4:11607275-11607294 Msa1140230:intron 40.0%
TTAGAGTTGAGGAGCTCAAT+TGG + chr7_4:11607490-11607509 None:intergenic 40.0%
TGTGGATCCTGAAATTGTCT+CGG - chr7_4:11607614-11607633 Msa1140230:intron 40.0%
GGGAAAATATACAGCAAGTC+TGG + chr7_4:11607804-11607823 None:intergenic 40.0%
ACCCCTAAAGAAAAGTCACA+AGG + chr7_4:11607879-11607898 None:intergenic 40.0%
! CAACTTTTGACCTTCAGCTT+AGG - chr7_4:11608021-11608040 Msa1140230:CDS 40.0%
ATAGTCACATCCTAAGCTGA+AGG + chr7_4:11608034-11608053 None:intergenic 40.0%
GATGCTAAGTGAACAACTAG+AGG - chr7_4:11608327-11608346 Msa1140230:CDS 40.0%
GATAAGCTTGCAAATGCTCT+TGG - chr7_4:11608421-11608440 Msa1140230:exon 40.0%
TGATAAGCTGTAGTGCAAGA+AGG - chr7_4:11608453-11608472 Msa1140230:five_prime_UTR 40.0%
! CATTTGGAGTCATCAGTAGT+GGG - chr7_4:11608498-11608517 Msa1140230:five_prime_UTR 40.0%
!!! TGGGTCCCTGCATTATTTTT+TGG - chr7_4:11608517-11608536 Msa1140230:five_prime_UTR 40.0%
GTTACTGCCATTATAGGACT+AGG - chr7_4:11608574-11608593 Msa1140230:five_prime_UTR 40.0%
!! TTCTAAAACGCCGTTAACGG+AGG - chr7_4:11604668-11604687 Msa1140230:three_prime_UTR 45.0%
CCATCATCGGAATTAGGGTT+TGG + chr7_4:11604783-11604802 None:intergenic 45.0%
CCAAACCCTAATTCCGATGA+TGG - chr7_4:11604780-11604799 Msa1140230:CDS 45.0%
!! TTGGACTAGGCAGGAGATTT+TGG - chr7_4:11604884-11604903 Msa1140230:CDS 45.0%
GAAAGAGTGATGCTGAAAGC+CGG - chr7_4:11604919-11604938 Msa1140230:CDS 45.0%
! TGCTGAAAGCCGGTTTAAAC+CGG - chr7_4:11604929-11604948 Msa1140230:CDS 45.0%
! TTGGTTCGAGTGAACCGAAA+TGG - chr7_4:11604970-11604989 Msa1140230:CDS 45.0%
TGGTTCGAGTGAACCGAAAT+GGG - chr7_4:11604971-11604990 Msa1140230:CDS 45.0%
GAAGAAACCAACGCCCATTT+CGG + chr7_4:11604987-11605006 None:intergenic 45.0%
GTAAGAAACACGGTGTGAAC+CGG - chr7_4:11605012-11605031 Msa1140230:intron 45.0%
TAAGAAACACGGTGTGAACC+GGG - chr7_4:11605013-11605032 Msa1140230:intron 45.0%
TCTTCTTATAATCTCCGGCG+AGG + chr7_4:11605070-11605089 None:intergenic 45.0%
GAGTCAGGTGAGAGATGAAA+CGG - chr7_4:11605103-11605122 Msa1140230:intron 45.0%
! GAGATGAAACGGAGTCGTTT+TGG - chr7_4:11605114-11605133 Msa1140230:intron 45.0%
GGAATGATTTGAGGAGAGAG+AGG - chr7_4:11605144-11605163 Msa1140230:intron 45.0%
!!! GCCTGGGTATTTTGATAAGG+AGG - chr7_4:11605172-11605191 Msa1140230:intron 45.0%
!! TGAGAAGGATGAGGTTTTGG+TGG - chr7_4:11605376-11605395 Msa1140230:intron 45.0%
CCTGATATAGGAACAGGTGA+AGG + chr7_4:11605422-11605441 None:intergenic 45.0%
CCTTCACCTGTTCCTATATC+AGG - chr7_4:11605419-11605438 Msa1140230:intron 45.0%
CACCTGTTCCTATATCAGGT+TGG - chr7_4:11605423-11605442 Msa1140230:intron 45.0%
CTTGAGCATTTCCTTCTCCT+TGG + chr7_4:11606182-11606201 None:intergenic 45.0%
CAAGGAGAAGGAAATGCTCA+AGG - chr7_4:11606180-11606199 Msa1140230:intron 45.0%
! CTATTGTTATCGACTGCGGA+TGG + chr7_4:11606494-11606513 None:intergenic 45.0%
! AGCTTTGTGCAATGTTACCG+TGG - chr7_4:11606757-11606776 Msa1140230:intron 45.0%
GCACAAAGGTTGTAAACAGG+GGG + chr7_4:11607247-11607266 None:intergenic 45.0%
CGCACAAAGGTTGTAAACAG+GGG + chr7_4:11607248-11607267 None:intergenic 45.0%
ATAGAGTCCTGTTCGCACAA+AGG + chr7_4:11607261-11607280 None:intergenic 45.0%
TTGTGCGAACAGGACTCTAT+AGG - chr7_4:11607261-11607280 Msa1140230:intron 45.0%
GTCTCGGAAAGACAAATGTG+TGG - chr7_4:11607596-11607615 Msa1140230:intron 45.0%
!! GGCTGGTTGTTTCTCATTGT+TGG + chr7_4:11608176-11608195 None:intergenic 45.0%
! AAACGGGCTCTACATCTCAA+GGG - chr7_4:11608206-11608225 Msa1140230:CDS 45.0%
TTGCAGTTTCATTCTGCTGC+TGG + chr7_4:11608381-11608400 None:intergenic 45.0%
CCACTACTGATGACTCCAAA+TGG + chr7_4:11608500-11608519 None:intergenic 45.0%
! CCATTTGGAGTCATCAGTAG+TGG - chr7_4:11608497-11608516 Msa1140230:five_prime_UTR 45.0%
!! AAAATATAAATTAATAATCA+AGG + chr7_4:11606112-11606131 None:intergenic 5.0%
!!! ATATATATTTTTTTATGTTA+GGG - chr7_4:11606683-11606702 Msa1140230:intron 5.0%
!! GGAGGCACCGTCACAAAATA+GGG - chr7_4:11604686-11604705 Msa1140230:three_prime_UTR 50.0%
TGGCGAGGATGGAAAACCAA+CGG - chr7_4:11604848-11604867 Msa1140230:CDS 50.0%
! GCTGAAAGCCGGTTTAAACC+GGG - chr7_4:11604930-11604949 Msa1140230:CDS 50.0%
! AAAGCCGGTTTAAACCGGGT+CGG - chr7_4:11604934-11604953 Msa1140230:CDS 50.0%
CATTCCGACCCGGTTTAAAC+CGG + chr7_4:11604941-11604960 None:intergenic 50.0%
GGTTTAAACCGGGTCGGAAT+GGG - chr7_4:11604940-11604959 Msa1140230:CDS 50.0%
AAGAAACACGGTGTGAACCG+GGG - chr7_4:11605014-11605033 Msa1140230:intron 50.0%
GTCCGATTCAGTGTAGGAAG+CGG - chr7_4:11605036-11605055 Msa1140230:intron 50.0%
CACCGCTTCCTACACTGAAT+CGG + chr7_4:11605041-11605060 None:intergenic 50.0%
GATAAAGGAGTGGGAGAGTC+AGG - chr7_4:11605088-11605107 Msa1140230:intron 50.0%
!!! CGGAGTCGTTTTGGTTGATG+AGG - chr7_4:11605123-11605142 Msa1140230:intron 50.0%
AGGAGAGAGAGGAAATTGCC+TGG - chr7_4:11605155-11605174 Msa1140230:intron 50.0%
GGAGAGAGAGGAAATTGCCT+GGG - chr7_4:11605156-11605175 Msa1140230:intron 50.0%
! GATACTTGATTCGCCGTCGA+TGG - chr7_4:11605202-11605221 Msa1140230:intron 50.0%
!! AACCGTCTCTGAAACCGACA+CGG + chr7_4:11605282-11605301 None:intergenic 50.0%
AGGAAAGTGAGTGGTGAGGA+TGG - chr7_4:11605338-11605357 Msa1140230:intron 50.0%
GGAAAGTGAGTGGTGAGGAT+GGG - chr7_4:11605339-11605358 Msa1140230:intron 50.0%
TTGGAGGGTTTGGGAGACAA+TGG - chr7_4:11606047-11606066 Msa1140230:intron 50.0%
!! ATATCTGCCATGGCGGATTG+CGG - chr7_4:11606361-11606380 Msa1140230:intron 50.0%
TGGGGCCTATCACATCATCT+TGG + chr7_4:11606877-11606896 None:intergenic 50.0%
ACCAGCCTCGAATCCAGAAA+CGG - chr7_4:11608189-11608208 Msa1140230:CDS 50.0%
TGAGATGTAGAGCCCGTTTC+TGG + chr7_4:11608205-11608224 None:intergenic 50.0%
! GAAACGGGCTCTACATCTCA+AGG - chr7_4:11608205-11608224 Msa1140230:CDS 50.0%
! AACGGGCTCTACATCTCAAG+GGG - chr7_4:11608207-11608226 Msa1140230:CDS 50.0%
CATCTCAAGGGGAACGTAAG+AGG - chr7_4:11608218-11608237 Msa1140230:CDS 50.0%
AAGGGGAACGTAAGAGGAAG+CGG - chr7_4:11608224-11608243 Msa1140230:CDS 50.0%
CTCTTCATTGCCGTCTCCAT+TGG + chr7_4:11608257-11608276 None:intergenic 50.0%
CAATGGAGACGGCAATGAAG+AGG - chr7_4:11608255-11608274 Msa1140230:CDS 50.0%
TGTGACGGTGCCTCCGTTAA+CGG + chr7_4:11604681-11604700 None:intergenic 55.0%
!! CGGAGGCACCGTCACAAAAT+AGG - chr7_4:11604685-11604704 Msa1140230:three_prime_UTR 55.0%
AGGATGGAAAACCAACGGCG+AGG - chr7_4:11604853-11604872 Msa1140230:CDS 55.0%
ATCTCCTGCCTAGTCCAACG+TGG + chr7_4:11604882-11604901 None:intergenic 55.0%
CGGTTTAAACCGGGTCGGAA+TGG - chr7_4:11604939-11604958 Msa1140230:CDS 55.0%
GAGTGAACCGAAATGGGCGT+TGG - chr7_4:11604977-11604996 Msa1140230:CDS 55.0%
TCCTACACTGAATCGGACCC+CGG + chr7_4:11605034-11605053 None:intergenic 55.0%
CGATTCAGTGTAGGAAGCGG+TGG - chr7_4:11605039-11605058 Msa1140230:intron 55.0%
! ACTTGATTCGCCGTCGATGG+CGG - chr7_4:11605205-11605224 Msa1140230:intron 55.0%
!! GGCAGCATCGGTTGTTGTTC+CGG - chr7_4:11605247-11605266 Msa1140230:intron 55.0%
TCCGGTGAATGTGTCCGTGT+CGG - chr7_4:11605265-11605284 Msa1140230:intron 55.0%
ACCGACACGGACACATTCAC+CGG + chr7_4:11605269-11605288 None:intergenic 55.0%
!! GTCCGTGTCGGTTTCAGAGA+CGG - chr7_4:11605277-11605296 Msa1140230:intron 55.0%
!! GTGTCGGTTTCAGAGACGGT+TGG - chr7_4:11605281-11605300 Msa1140230:intron 55.0%
TCGGTTTCAGAGACGGTTGG+AGG - chr7_4:11605284-11605303 Msa1140230:intron 55.0%
CGGTTTCAGAGACGGTTGGA+GGG - chr7_4:11605285-11605304 Msa1140230:intron 55.0%
GGTTTCAGAGACGGTTGGAG+GGG - chr7_4:11605286-11605305 Msa1140230:intron 55.0%
CAGTTTCTACCACTCCTCCG+AGG - chr7_4:11606153-11606172 Msa1140230:intron 55.0%
TTCCTTCTCCTTGGCAGCCT+CGG + chr7_4:11606173-11606192 None:intergenic 55.0%
CCACAATGCGATTGCAGCTG+AGG + chr7_4:11606655-11606674 None:intergenic 55.0%
CCTCAGCTGCAATCGCATTG+TGG - chr7_4:11606652-11606671 Msa1140230:intron 55.0%
CCAGCCTCGAATCCAGAAAC+GGG - chr7_4:11608190-11608209 Msa1140230:CDS 55.0%
! AGAGCCCGTTTCTGGATTCG+AGG + chr7_4:11608197-11608216 None:intergenic 55.0%
AGGAAGCGGTTCGCAACCAA+TGG - chr7_4:11608238-11608257 Msa1140230:CDS 55.0%
CGGTTCGCAACCAATGGAGA+CGG - chr7_4:11608244-11608263 Msa1140230:CDS 55.0%
TGGAGACGGCAATGAAGAGG+AGG - chr7_4:11608258-11608277 Msa1140230:CDS 55.0%
TCCATCCTCGCCACCGTTCA+CGG + chr7_4:11604841-11604860 None:intergenic 60.0%
AAACCGGGTCGGAATGGGTC+TGG - chr7_4:11604945-11604964 Msa1140230:CDS 60.0%
AACCGGGTCGGAATGGGTCT+GGG - chr7_4:11604946-11604965 Msa1140230:CDS 60.0%
AACCCAGACCCATTCCGACC+CGG + chr7_4:11604951-11604970 None:intergenic 60.0%
GGTCGGAATGGGTCTGGGTT+TGG - chr7_4:11604951-11604970 Msa1140230:CDS 60.0%
ACCGGGGTCCGATTCAGTGT+AGG - chr7_4:11605030-11605049 Msa1140230:intron 60.0%
AGAGACGGTTGGAGGGGATG+AGG - chr7_4:11605292-11605311 Msa1140230:intron 60.0%
! ACAGCTATTGGGGGCACGTG+TGG - chr7_4:11605656-11605675 Msa1140230:intron 60.0%
! CAGCTATTGGGGGCACGTGT+GGG - chr7_4:11605657-11605676 Msa1140230:intron 60.0%
TGTGAAGGATGGCAGCGCCA+TGG - chr7_4:11606417-11606436 Msa1140230:intron 60.0%
! CCCGTTTCTGGATTCGAGGC+TGG + chr7_4:11608193-11608212 None:intergenic 60.0%
ATCCTCGCCACCGTTCACGG+CGG + chr7_4:11604838-11604857 None:intergenic 65.0%
CGAGGCTGCCACGTTGGACT+AGG - chr7_4:11604871-11604890 Msa1140230:CDS 65.0%
! GCTGCCACGTTGGACTAGGC+AGG - chr7_4:11604875-11604894 Msa1140230:CDS 65.0%
AAGCGGTGGAGCAACCTCGC+CGG - chr7_4:11605053-11605072 Msa1140230:intron 65.0%
! TGATTCGCCGTCGATGGCGG+TGG - chr7_4:11605208-11605227 Msa1140230:intron 65.0%
GGCTGCAGCTGTGGCAGCAT+CGG - chr7_4:11605235-11605254 Msa1140230:intron 65.0%
GACGGTTGGAGGGGATGAGG+AGG - chr7_4:11605295-11605314 Msa1140230:intron 65.0%
CTTCTCCTTGGCAGCCTCGG+AGG + chr7_4:11606170-11606189 None:intergenic 65.0%
CTCCGAGGCTGCCAAGGAGA+AGG - chr7_4:11606168-11606187 Msa1140230:intron 65.0%
!! TCTGCCATGGCGGATTGCGG+TGG - chr7_4:11606364-11606383 Msa1140230:intron 65.0%
!! CTGCCATGGCGGATTGCGGT+GGG - chr7_4:11606365-11606384 Msa1140230:intron 65.0%
TCTCCCACCGCAATCCGCCA+TGG + chr7_4:11606371-11606390 None:intergenic 65.0%
CGACTGCGGATGGCAGACCA+TGG + chr7_4:11606484-11606503 None:intergenic 65.0%
CCACCGTCCTCCGCCGTGAA+CGG - chr7_4:11604825-11604844 Msa1140230:CDS 70.0%
CCACCGTTCACGGCGGAGGA+CGG + chr7_4:11604831-11604850 None:intergenic 70.0%
GCCGTGAACGGTGGCGAGGA+TGG - chr7_4:11604837-11604856 Msa1140230:CDS 70.0%
CAACGTGGCAGCCTCGCCGT+TGG + chr7_4:11604867-11604886 None:intergenic 70.0%
CAACGGCGAGGCTGCCACGT+TGG - chr7_4:11604865-11604884 Msa1140230:CDS 70.0%
CCTTGGCAGCCTCGGAGGAG+TGG + chr7_4:11606165-11606184 None:intergenic 70.0%
CCACTCCTCCGAGGCTGCCA+AGG - chr7_4:11606162-11606181 Msa1140230:intron 70.0%
CCGTTCACGGCGGAGGACGG+TGG + chr7_4:11604828-11604847 None:intergenic 75.0%
CCGTCCTCCGCCGTGAACGG+TGG - chr7_4:11604828-11604847 Msa1140230:CDS 75.0%
CTCGCCACCGTTCACGGCGG+AGG + chr7_4:11604835-11604854 None:intergenic 75.0%
CTCCGCCGTGAACGGTGGCG+AGG - chr7_4:11604833-11604852 Msa1140230:CDS 75.0%
! GCCGTCGATGGCGGTGGCAG+CGG - chr7_4:11605214-11605233 Msa1140230:intron 75.0%
GCCGCTGCCACCGCCATCGA+CGG + chr7_4:11605218-11605237 None:intergenic 75.0%
GGTGGCAGCGGCTGCAGCTG+TGG - chr7_4:11605226-11605245 Msa1140230:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 11604574 11608624 11604574 ID=Msa1140230;Name=Msa1140230
chr7_4 mRNA 11604574 11608624 11604574 ID=Msa1140230-mRNA-1;Parent=Msa1140230;Name=Msa1140230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=191|1|1|1|1|1|3|159|341
chr7_4 exon 11604574 11605028 11604574 ID=Msa1140230-mRNA-1:exon:2778;Parent=Msa1140230-mRNA-1
chr7_4 exon 11606997 11607050 11606997 ID=Msa1140230-mRNA-1:exon:2777;Parent=Msa1140230-mRNA-1
chr7_4 exon 11607758 11608624 11607758 ID=Msa1140230-mRNA-1:exon:2776;Parent=Msa1140230-mRNA-1
chr7_4 five_prime_UTR 11608434 11608624 11608434 ID=Msa1140230-mRNA-1:five_prime_utr;Parent=Msa1140230-mRNA-1
chr7_4 CDS 11607758 11608433 11607758 ID=Msa1140230-mRNA-1:cds;Parent=Msa1140230-mRNA-1
chr7_4 CDS 11606997 11607050 11606997 ID=Msa1140230-mRNA-1:cds;Parent=Msa1140230-mRNA-1
chr7_4 CDS 11604733 11605028 11604733 ID=Msa1140230-mRNA-1:cds;Parent=Msa1140230-mRNA-1
chr7_4 three_prime_UTR 11604574 11604732 11604574 ID=Msa1140230-mRNA-1:three_prime_utr;Parent=Msa1140230-mRNA-1
Gene Sequence

>Msa1140230

ATGGCTTTGGAACAACCAAACCCTAATTCCGATGATGGAACTGTTAACGGTAACGGAACACCACCGTCCTCCGCCGTGAACGGTGGCGAGGATGGAAAACCAACGGCGAGGCTGCCACGTTGGACTAGGCAGGAGATTTTGGTTTTGATACAGGGAAAGAGTGATGCTGAAAGCCGGTTTAAACCGGGTCGGAATGGGTCTGGGTTTGGTTCGAGTGAACCGAAATGGGCGTTGGTTTCTTCGTATTGTAAGAAACACGGTGTGAACCGGGGTCCGATTCAGTGTAGGAAGCGGTGGAGCAACCTCGCCGGAGATTATAAGAAGATAAAGGAGTGGGAGAGTCAGGTGAGAGATGAAACGGAGTCGTTTTGGTTGATGAGGAATGATTTGAGGAGAGAGAGGAAATTGCCTGGGTATTTTGATAAGGAGGTTTATGAGATACTTGATTCGCCGTCGATGGCGGTGGCAGCGGCTGCAGCTGTGGCAGCATCGGTTGTTGTTCCGGTGAATGTGTCCGTGTCGGTTTCAGAGACGGTTGGAGGGGATGAGGAGGTTCATATTTATGATAGTAATAGGAAAGTGAGTGGTGAGGATGGGTTGTTTTCTGATTTTGAGAAGGATGAGGTTTTGGTGGCTAATAAGAATGTTCATGTTCCTTCACCTGTTCCTATATCAGAGAAGCAGTTTCTACCACTCCTCCGAGGCTGCCAAGGAGAAGGAAATGCTCAAGGTACCAACAATGAGAAACAACCAGCCTCGAATCCAGAAACGGGCTCTACATCTCAAGGGGAACGTAAGAGGAAGCGGTTCGCAACCAATGGAGACGGCAATGAAGAGGAGGAAAGTTTGCATAGTCAATTAATTGATGTATTGGAGAAAAATGGGAAGATGCTAAGTGAACAACTAGAGGCTCAGAACATCAATTTTCAGTTGGATCGCCAGCAGCAGAATGAAACTGCAAGTAGCATAGTTGCTGTGCTTGATAAGCTTGCAAATGCTCTTGGAAGAATTGCTGATAAGCTGTAG

Protein sequence

>Msa1140230

MALEQPNPNSDDGTVNGNGTPPSSAVNGGEDGKPTARLPRWTRQEILVLIQGKSDAESRFKPGRNGSGFGSSEPKWALVSSYCKKHGVNRGPIQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRNDLRRERKLPGYFDKEVYEILDSPSMAVAAAAAVAASVVVPVNVSVSVSETVGGDEEVHIYDSNRKVSGEDGLFSDFEKDEVLVANKNVHVPSPVPISEKQFLPLLRGCQGEGNAQGTNNEKQPASNPETGSTSQGERKRKRFATNGDGNEEEESLHSQLIDVLEKNGKMLSEQLEAQNINFQLDRQQQNETASSIVAVLDKLANALGRIADKL*