AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861470 MtrunA17_Chr5g0395301 99.222 257 2 0 1 257 1 257 0.0 524
Msa0861470 MtrunA17_Chr5g0448431 28.289 152 86 3 17 168 14 142 9.47e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861470 AT5G16800.2 59.459 259 101 2 1 257 14 270 7.25e-107 310
Msa0861470 AT5G16800.3 56.870 262 106 3 1 257 14 273 1.60e-97 286
Msa0861470 AT5G16800.1 61.062 226 82 1 1 226 14 233 6.51e-96 281
Msa0861470 AT3G02980.1 60.181 221 87 1 12 232 25 244 7.60e-95 279
Msa0861470 AT3G02980.2 55.333 150 66 1 83 232 26 174 2.36e-56 178
Msa0861470 AT5G11340.1 27.607 163 94 4 17 179 14 152 2.98e-14 68.9

Find 82 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTATCAAGTGTTAAA+TGG 0.185040 5_4:+60818570 Msa0861470:five_prime_UTR
TTGATTGACTAGACCCTTTC+GGG 0.206622 5_4:-60818703 None:intergenic
CTGTTGATTATTGTCGTAAT+TGG 0.221186 5_4:+60821678 Msa0861470:three_prime_UTR
TTATTCGTGCACTACGTAAA+TGG 0.221441 5_4:+60820704 Msa0861470:CDS
CTACGTGAAGAGTGGCTTTA+AGG 0.221630 5_4:+60821239 Msa0861470:CDS
ACATACAGTAAGTATAATTT+TGG 0.231091 5_4:-60821476 None:intergenic
GGCCAAAGTGATGAACTTAT+TGG 0.280025 5_4:+60818968 Msa0861470:CDS
AACAATCATCATAATCTTCT+TGG 0.297967 5_4:+60818191 Msa0861470:five_prime_UTR
GGGAGTAGTGGAAGCATATA+GGG 0.323949 5_4:+60820406 Msa0861470:CDS
CAGAGTAGTGACAATGAAAA+AGG 0.325536 5_4:-60818593 None:intergenic
TTTGATTGACTAGACCCTTT+CGG 0.334623 5_4:-60818704 None:intergenic
CACTAAAGTCTGGTCAGATT+TGG 0.334799 5_4:-60820369 None:intergenic
TATTCGTGCACTACGTAAAT+GGG 0.359781 5_4:+60820705 Msa0861470:CDS
TGGGAGTAGTGGAAGCATAT+AGG 0.379806 5_4:+60820405 Msa0861470:CDS
GCATATAGGGGCCTTGGAAT+AGG 0.403458 5_4:+60820419 Msa0861470:CDS
AGTATTATCTTCTATAAGAA+TGG 0.411563 5_4:-60821614 None:intergenic
CACCAGCTTCTTCTTTGATA+CGG 0.412039 5_4:+60820516 Msa0861470:intron
ATGTGTGTGGCCTACAGTTT+TGG 0.417271 5_4:-60821540 None:intergenic
TCAAAATCAGACGGTCGTAT+AGG 0.418162 5_4:-60818740 None:intergenic
ATGGTAGATTATTTCCCATC+AGG 0.419207 5_4:+60818780 Msa0861470:CDS
GTGGAAGCATATAGGGGCCT+TGG 0.421160 5_4:+60820413 Msa0861470:CDS
AGTTCATCACTTTGGCCATT+CGG 0.428159 5_4:-60818962 None:intergenic
CATTGTCACTACTCTGTGAA+TGG 0.432482 5_4:+60818600 Msa0861470:five_prime_UTR
TGGAAGTGGTTGTTGATGCT+TGG 0.446825 5_4:+60818620 Msa0861470:five_prime_UTR
ACCAGCTTCTTCTTTGATAC+GGG 0.449831 5_4:+60820517 Msa0861470:intron
CTATTCTGTCAGAATAAACT+TGG 0.453739 5_4:+60821501 Msa0861470:three_prime_UTR
CAAGTGTGTTAGAAAGCTGC+AGG 0.455738 5_4:+60820643 Msa0861470:CDS
ATTATGATGATTGTTTCGTT+CGG 0.467301 5_4:-60818183 None:intergenic
ATCCAATAAGTTCATCACTT+TGG 0.471996 5_4:-60818970 None:intergenic
AGCTGTGCAAGAACGAAGTT+AGG 0.483514 5_4:+60821274 Msa0861470:CDS
TGCACTTACAATGGCGAGCA+AGG 0.487162 5_4:-60820737 None:intergenic
TAAGTGGAAATAACGATCAA+TGG 0.489757 5_4:+60818676 Msa0861470:exon
GATCACAGCAAGTAGCGAAA+TGG 0.489793 5_4:-60818161 None:intergenic
TAAGTGTGATTGAATAGTAC+AGG 0.496458 5_4:-60821433 None:intergenic
AACTTCGTTCTTGCACAGCT+TGG 0.497962 5_4:-60821271 None:intergenic
GTATTATCTTCTATAAGAAT+GGG 0.503576 5_4:-60821613 None:intergenic
GAAATGAAAGAAATAGAGAA+GGG 0.511462 5_4:+60818101 None:intergenic
CAAATTATTTGACCATGGGT+TGG 0.512806 5_4:+60821588 Msa0861470:three_prime_UTR
TTGTAGATAGTGGATTTGCT+TGG 0.513932 5_4:+60820335 Msa0861470:intron
CGAAGATGTGGTGAACAGAC+GGG 0.516575 5_4:+60818904 Msa0861470:CDS
CACTACTCTGTGAATGGAAG+TGG 0.518401 5_4:+60818606 Msa0861470:five_prime_UTR
TTTAGTGTATGTTCTAACAC+TGG 0.518861 5_4:+60820385 Msa0861470:CDS
TTAGAACATACACTAAAGTC+TGG 0.520023 5_4:-60820379 None:intergenic
TTAACAAATTATTTGACCAT+GGG 0.522271 5_4:+60821584 Msa0861470:three_prime_UTR
TTGAGAGTGAGACAAGAGAA+TGG 0.529226 5_4:-60821329 None:intergenic
GATCAATGGTAAACCCGAAA+GGG 0.533764 5_4:+60818690 Msa0861470:exon
TTTAACAAATTATTTGACCA+TGG 0.535676 5_4:+60821583 Msa0861470:three_prime_UTR
TCGAAGATGTGGTGAACAGA+CGG 0.541792 5_4:+60818903 Msa0861470:CDS
CAGACGGGATATTGTGTCGT+GGG 0.543303 5_4:+60818919 Msa0861470:CDS
ACTTATAATTCTCACTAGAA+AGG 0.552289 5_4:+60821451 Msa0861470:three_prime_UTR
TGTTCTAACACTGGGAGTAG+TGG 0.563129 5_4:+60820394 Msa0861470:CDS
TGAAATGAAAGAAATAGAGA+AGG 0.568796 5_4:+60818100 None:intergenic
TGTTCTTGCAAAAGAAAGTG+AGG 0.573579 5_4:+60819009 Msa0861470:CDS
GAAGAGTGGCTTTAAGGCAG+TGG 0.581385 5_4:+60821245 Msa0861470:CDS
AACATGGCAGTCGAGTCTAC+TGG 0.586352 5_4:+60821369 Msa0861470:CDS
CGATCAATGGTAAACCCGAA+AGG 0.590054 5_4:+60818689 Msa0861470:exon
TTGGCAGAAGTAGTAAGAGT+AGG 0.590269 5_4:+60821697 Msa0861470:three_prime_UTR
AGCTTCTTCTTTGATACGGG+AGG 0.591740 5_4:+60820520 Msa0861470:intron
ACAAACTGCTACCTATTCCA+AGG 0.593056 5_4:-60820430 None:intergenic
TTAGTGTATGTTCTAACACT+GGG 0.599355 5_4:+60820386 Msa0861470:CDS
TTTGTAAGCTACGTGAAGAG+TGG 0.599551 5_4:+60821231 Msa0861470:CDS
ACACGATGATCTCACCTGAT+GGG 0.613102 5_4:-60818794 None:intergenic
ATTCGTGCACTACGTAAATG+GGG 0.616046 5_4:+60820706 Msa0861470:CDS
AGAGATGACACCAAAACTGT+AGG 0.623611 5_4:+60821530 Msa0861470:three_prime_UTR
GTTGATCTTAGTCGACCGAA+TGG 0.627310 5_4:+60818947 Msa0861470:CDS
ACGAAGTTAGGAAGATCTCA+AGG 0.631340 5_4:+60821286 Msa0861470:CDS
AGTTAGGAAGATCTCAAGGT+GGG 0.635024 5_4:+60821290 Msa0861470:CDS
GGAGTAGTGGAAGCATATAG+GGG 0.641948 5_4:+60820407 Msa0861470:CDS
TAAGAATGGGAGCCAACCCA+TGG 0.644300 5_4:-60821600 None:intergenic
AAGTGTGTTAGAAAGCTGCA+GGG 0.647080 5_4:+60820644 Msa0861470:CDS
TTCGTGCACTACGTAAATGG+GGG 0.654674 5_4:+60820707 Msa0861470:CDS
ACAGACGGGATATTGTGTCG+TGG 0.662598 5_4:+60818918 Msa0861470:CDS
AAATGAAAGAAATAGAGAAG+GGG 0.664412 5_4:+60818102 None:intergenic
TCACGTGCAAGTAAACCGCT+CGG 0.669384 5_4:-60820574 None:intergenic
AAGCATTCCAACGTGCCGAG+CGG 0.675262 5_4:+60820559 Msa0861470:CDS
ACAGCAAGTAGCGAAATGGA+AGG 0.676149 5_4:-60818157 None:intergenic
AGACGGGATATTGTGTCGTG+GGG 0.679193 5_4:+60818920 Msa0861470:CDS
AATACCCAACAAAAGAAACA+TGG 0.688655 5_4:+60821353 Msa0861470:CDS
TCTAAAACGTCAAAATCAGA+CGG 0.689832 5_4:-60818749 None:intergenic
AAGTAAACCGCTCGGCACGT+TGG 0.692398 5_4:-60820566 None:intergenic
AAGTTAGGAAGATCTCAAGG+TGG 0.739682 5_4:+60821289 Msa0861470:CDS
TTATTGGATTTGTAACAGCG+CGG 0.789219 5_4:+60818984 Msa0861470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTATTTATTTTAATATTCT+TGG + chr5_4:60819495-60819514 Msa0861470:intron 10.0%
!!! TTCTGAAAATTTTGTTTATT+TGG + chr5_4:60818540-60818559 Msa0861470:intron 15.0%
!!! ATTTACTTGTTTTCTATAAA+GGG + chr5_4:60819165-60819184 Msa0861470:intron 15.0%
!! TTAAAATAAATACTCCAAAT+GGG - chr5_4:60819489-60819508 None:intergenic 15.0%
!! ATTAAAATAAATACTCCAAA+TGG - chr5_4:60819490-60819509 None:intergenic 15.0%
!!! ATTTATTTTAATATTCTTGG+AGG + chr5_4:60819498-60819517 Msa0861470:intron 15.0%
!! AATAAAAAATTATCAGCAAA+AGG - chr5_4:60820297-60820316 None:intergenic 15.0%
!! ATATTGAAGTCTAATAAATT+CGG - chr5_4:60821094-60821113 None:intergenic 15.0%
!!! TTCCTTTTATCTATAAAAAA+CGG + chr5_4:60821152-60821171 Msa0861470:intron 15.0%
!! TGCATACAGTTATATATAAA+GGG - chr5_4:60819041-60819060 None:intergenic 20.0%
!! ATGCATACAGTTATATATAA+AGG - chr5_4:60819042-60819061 None:intergenic 20.0%
!!! GATTTACTTGTTTTCTATAA+AGG + chr5_4:60819164-60819183 Msa0861470:intron 20.0%
!!! TTTACTTGTTTTCTATAAAG+GGG + chr5_4:60819166-60819185 Msa0861470:intron 20.0%
!! TTGAAATATTACATCAAACA+TGG - chr5_4:60819355-60819374 None:intergenic 20.0%
!! ACTACAATATATATTCCTAA+TGG - chr5_4:60819615-60819634 None:intergenic 20.0%
!! ATTAGGAATATATATTGTAG+TGG + chr5_4:60819614-60819633 Msa0861470:intron 20.0%
!!! CATTTTGATTATAACTTCTA+TGG + chr5_4:60819655-60819674 Msa0861470:intron 20.0%
!!! CTACAGCATATATTTTTAAT+AGG - chr5_4:60819708-60819727 None:intergenic 20.0%
!!! TTTTTCATAACAAGTTGTAT+TGG + chr5_4:60819936-60819955 Msa0861470:intron 20.0%
!!! TTTTCATAACAAGTTGTATT+GGG + chr5_4:60819937-60819956 Msa0861470:intron 20.0%
!!! AAAAAAAAAAGAGTATTGTC+TGG - chr5_4:60820028-60820047 None:intergenic 20.0%
!! TTATTCACCAATTTATCAAT+TGG + chr5_4:60820145-60820164 Msa0861470:intron 20.0%
!! TATAACACCAATTGATAAAT+TGG - chr5_4:60820155-60820174 None:intergenic 20.0%
!! AATATTATTCTTGTAGATAG+TGG + chr5_4:60820325-60820344 Msa0861470:intron 20.0%
!! ATAAAAATGAATCATAGTGT+TGG - chr5_4:60820688-60820707 None:intergenic 20.0%
!!! TAAAGAATACAAAACCTTTT+TGG - chr5_4:60820943-60820962 None:intergenic 20.0%
!!! TTCCGTTTTTTATAGATAAA+AGG - chr5_4:60821157-60821176 None:intergenic 20.0%
!! ATGGAAAATAAAATTCTCTA+AGG - chr5_4:60821183-60821202 None:intergenic 20.0%
!!! ACATACAGTAAGTATAATTT+TGG - chr5_4:60821479-60821498 None:intergenic 20.0%
!! TTTAACAAATTATTTGACCA+TGG + chr5_4:60821583-60821602 Msa0861470:three_prime_UTR 20.0%
!! TTAACAAATTATTTGACCAT+GGG + chr5_4:60821584-60821603 Msa0861470:three_prime_UTR 20.0%
!! GTATTATCTTCTATAAGAAT+GGG - chr5_4:60821616-60821635 None:intergenic 20.0%
!! AGTATTATCTTCTATAAGAA+TGG - chr5_4:60821617-60821636 None:intergenic 20.0%
! ATTATGATGATTGTTTCGTT+CGG - chr5_4:60818186-60818205 None:intergenic 25.0%
! AACAATCATCATAATCTTCT+TGG + chr5_4:60818191-60818210 Msa0861470:five_prime_UTR 25.0%
!!! TAATTTTAACAAACACGTGA+TGG - chr5_4:60818237-60818256 None:intergenic 25.0%
! ATCAACTATCATTCATTTCT+AGG + chr5_4:60818363-60818382 Msa0861470:intron 25.0%
! TGCAATTATCAAGTGTTAAA+TGG + chr5_4:60818570-60818589 Msa0861470:five_prime_UTR 25.0%
!! GATATTTTCTGTGAATTAAG+TGG + chr5_4:60818660-60818679 Msa0861470:five_prime_UTR 25.0%
! GTCAATCAAAAATATGCTAT+CGG + chr5_4:60818717-60818736 Msa0861470:CDS 25.0%
!!! TGAGTATTTTGATTTGTGTT+TGG + chr5_4:60818840-60818859 Msa0861470:intron 25.0%
! TTAAGATGTTTATGAATCTC+AGG + chr5_4:60818864-60818883 Msa0861470:intron 25.0%
! GCATACAGTTATATATAAAG+GGG - chr5_4:60819040-60819059 None:intergenic 25.0%
!! ACATAACACATACTTTGTTT+GGG - chr5_4:60819243-60819262 None:intergenic 25.0%
!! AGATTGATAGACTCAAATTT+TGG - chr5_4:60819316-60819335 None:intergenic 25.0%
! TTTATGAGTAGTTATCCATT+AGG + chr5_4:60819597-60819616 Msa0861470:intron 25.0%
! ATCGAATGAGATAGTTTAAT+CGG - chr5_4:60820244-60820263 None:intergenic 25.0%
! GTTAAACTAAGAATTACAGA+GGG - chr5_4:60820275-60820294 None:intergenic 25.0%
! TAGATTACCAATCATATTAC+TGG - chr5_4:60820483-60820502 None:intergenic 25.0%
! TCAAAACGATTATTTGACAT+TGG + chr5_4:60821032-60821051 Msa0861470:intron 25.0%
! TCAATATTGATGTATACTTG+TGG + chr5_4:60821107-60821126 Msa0861470:intron 25.0%
! ACTTATAATTCTCACTAGAA+AGG + chr5_4:60821451-60821470 Msa0861470:three_prime_UTR 25.0%
!! TTTTACATTGTATATGTGTG+TGG - chr5_4:60821556-60821575 None:intergenic 25.0%
! ACAACAATTGACTCAAATCT+TGG - chr5_4:60818462-60818481 None:intergenic 30.0%
TAAGTGGAAATAACGATCAA+TGG + chr5_4:60818676-60818695 Msa0861470:exon 30.0%
! TCTAAAACGTCAAAATCAGA+CGG - chr5_4:60818752-60818771 None:intergenic 30.0%
ATCCAATAAGTTCATCACTT+TGG - chr5_4:60818973-60818992 None:intergenic 30.0%
GACATAACACATACTTTGTT+TGG - chr5_4:60819244-60819263 None:intergenic 30.0%
ATGTGTTATGTCTATGTTCA+AGG + chr5_4:60819252-60819271 Msa0861470:intron 30.0%
!! AGACTCAAATTTTGGTATCA+AGG - chr5_4:60819308-60819327 None:intergenic 30.0%
!! TGATCCTTTTATTAGTCTGA+TGG + chr5_4:60819405-60819424 Msa0861470:intron 30.0%
!! GATCCTTTTATTAGTCTGAT+GGG + chr5_4:60819406-60819425 Msa0861470:intron 30.0%
TAAGCTAATGGAACATTATC+AGG - chr5_4:60819450-60819469 None:intergenic 30.0%
!!! TTAGTTGGGTTTTAAGCTAA+TGG - chr5_4:60819462-60819481 None:intergenic 30.0%
AAATAAATACTCCAAATGGG+AGG - chr5_4:60819486-60819505 None:intergenic 30.0%
ACTTCTATGGTGACAATTAT+AGG + chr5_4:60819668-60819687 Msa0861470:intron 30.0%
CTGTGTTTATGTTGTAAGTT+TGG + chr5_4:60819868-60819887 Msa0861470:intron 30.0%
!! ACAACTTGTTATGAAAAACC+AGG - chr5_4:60819934-60819953 None:intergenic 30.0%
ATTGTGTGATTCAATTGCAT+TGG + chr5_4:60819965-60819984 Msa0861470:intron 30.0%
AACTTACAATTCACACAAAC+TGG - chr5_4:60820002-60820021 None:intergenic 30.0%
GTTTGTGTGAATTGTAAGTT+TGG + chr5_4:60820002-60820021 Msa0861470:intron 30.0%
CAAGCAATACAACTAAGAAA+AGG - chr5_4:60820103-60820122 None:intergenic 30.0%
TTGAGTAAGTCATTACCTAA+TGG - chr5_4:60820205-60820224 None:intergenic 30.0%
GGTTAAACTAAGAATTACAG+AGG - chr5_4:60820276-60820295 None:intergenic 30.0%
TTAGAACATACACTAAAGTC+TGG - chr5_4:60820382-60820401 None:intergenic 30.0%
TTTAGTGTATGTTCTAACAC+TGG + chr5_4:60820385-60820404 Msa0861470:CDS 30.0%
TTAGTGTATGTTCTAACACT+GGG + chr5_4:60820386-60820405 Msa0861470:CDS 30.0%
TTACCAATCATATTACTGGA+GGG - chr5_4:60820479-60820498 None:intergenic 30.0%
ATTACCAATCATATTACTGG+AGG - chr5_4:60820480-60820499 None:intergenic 30.0%
!!! CAGGGCTTTTATTTTATCAA+TGG + chr5_4:60820662-60820681 Msa0861470:CDS 30.0%
GAAAGATATTGCACTTACAA+TGG - chr5_4:60820749-60820768 None:intergenic 30.0%
TTGTAGTATTACTCCTTAAC+TGG + chr5_4:60820870-60820889 Msa0861470:intron 30.0%
TGTAGTATTACTCCTTAACT+GGG + chr5_4:60820871-60820890 Msa0861470:intron 30.0%
CAAATTCTATATCCCAGTTA+AGG - chr5_4:60820886-60820905 None:intergenic 30.0%
TTGGTTCAACTTCATTACTT+TGG - chr5_4:60820924-60820943 None:intergenic 30.0%
GTAATGAAGTTGAACCAAAA+AGG + chr5_4:60820926-60820945 Msa0861470:intron 30.0%
AGATAAAAGGAACCACAAAA+AGG - chr5_4:60821144-60821163 None:intergenic 30.0%
! AAGCTGTCTGAAATATGAAA+TGG - chr5_4:60821202-60821221 None:intergenic 30.0%
AATACCCAACAAAAGAAACA+TGG + chr5_4:60821353-60821372 Msa0861470:CDS 30.0%
ACAGGAAAAAGAAAACTAAC+AGG - chr5_4:60821418-60821437 None:intergenic 30.0%
TAAGTGTGATTGAATAGTAC+AGG - chr5_4:60821436-60821455 None:intergenic 30.0%
CTATTCTGTCAGAATAAACT+TGG + chr5_4:60821501-60821520 Msa0861470:three_prime_UTR 30.0%
! CTGTTGATTATTGTCGTAAT+TGG + chr5_4:60821678-60821697 Msa0861470:three_prime_UTR 30.0%
CAGAGTAGTGACAATGAAAA+AGG - chr5_4:60818596-60818615 None:intergenic 35.0%
TTTGATTGACTAGACCCTTT+CGG - chr5_4:60818707-60818726 None:intergenic 35.0%
ATGGTAGATTATTTCCCATC+AGG + chr5_4:60818780-60818799 Msa0861470:CDS 35.0%
!!! ATCTGCTTTTTTCGAAGATG+TGG + chr5_4:60818892-60818911 Msa0861470:CDS 35.0%
TTATTGGATTTGTAACAGCG+CGG + chr5_4:60818984-60819003 Msa0861470:CDS 35.0%
TGTTCTTGCAAAAGAAAGTG+AGG + chr5_4:60819009-60819028 Msa0861470:CDS 35.0%
TTACTACTCTGTGGAAAGTA+TGG + chr5_4:60819124-60819143 Msa0861470:intron 35.0%
TTAAGCAGACAGTGTAAACT+AGG - chr5_4:60819379-60819398 None:intergenic 35.0%
GTTCCCATCAGACTAATAAA+AGG - chr5_4:60819412-60819431 None:intergenic 35.0%
!! TATCAGGTCCATTTAGTTCT+TGG - chr5_4:60819434-60819453 None:intergenic 35.0%
ACTTATGATTCACTTATGCG+TGG + chr5_4:60819544-60819563 Msa0861470:intron 35.0%
TGAAACCGGGAAGAAAAAAA+AGG + chr5_4:60819824-60819843 Msa0861470:intron 35.0%
!!! CACTACCTTTTTTTTCTTCC+CGG - chr5_4:60819832-60819851 None:intergenic 35.0%
CAGAATATCAGAATACTCTC+TGG + chr5_4:60819892-60819911 Msa0861470:intron 35.0%
ATATCAGAATACTCTCTGGT+AGG + chr5_4:60819896-60819915 Msa0861470:intron 35.0%
TAAGTAGACAGAGAATACGT+AGG + chr5_4:60820057-60820076 Msa0861470:intron 35.0%
! CGTAGGAGTAATACGAATTT+TGG + chr5_4:60820074-60820093 Msa0861470:intron 35.0%
!! GGTGTTATATCCTAGTCTTT+TGG + chr5_4:60820166-60820185 Msa0861470:intron 35.0%
ACTATCTCATTCGATAGAGT+AGG + chr5_4:60820249-60820268 Msa0861470:intron 35.0%
!! TTGTAGATAGTGGATTTGCT+TGG + chr5_4:60820335-60820354 Msa0861470:intron 35.0%
TTATTCGTGCACTACGTAAA+TGG + chr5_4:60820704-60820723 Msa0861470:CDS 35.0%
TATTCGTGCACTACGTAAAT+GGG + chr5_4:60820705-60820724 Msa0861470:CDS 35.0%
TCAGTCAGAATATAACAGCA+GGG - chr5_4:60820782-60820801 None:intergenic 35.0%
ATCAGTCAGAATATAACAGC+AGG - chr5_4:60820783-60820802 None:intergenic 35.0%
GAAACTGAAACCTAGTTAGA+CGG - chr5_4:60821072-60821091 None:intergenic 35.0%
! ACTGCCATGTTTCTTTTGTT+GGG - chr5_4:60821360-60821379 None:intergenic 35.0%
CAAATTATTTGACCATGGGT+TGG + chr5_4:60821588-60821607 Msa0861470:three_prime_UTR 35.0%
CACGCGAGAATTGAATTTGA+TGG - chr5_4:60818297-60818316 None:intergenic 40.0%
CATTGTCACTACTCTGTGAA+TGG + chr5_4:60818600-60818619 Msa0861470:five_prime_UTR 40.0%
GATCAATGGTAAACCCGAAA+GGG + chr5_4:60818690-60818709 Msa0861470:exon 40.0%
TTGATTGACTAGACCCTTTC+GGG - chr5_4:60818706-60818725 None:intergenic 40.0%
TCAAAATCAGACGGTCGTAT+AGG - chr5_4:60818743-60818762 None:intergenic 40.0%
!!! GACGTTTTAGAGCGTATTCA+TGG + chr5_4:60818761-60818780 Msa0861470:CDS 40.0%
ATACTCAAACTTGAAGCCAG+TGG - chr5_4:60818827-60818846 None:intergenic 40.0%
AGTTCATCACTTTGGCCATT+CGG - chr5_4:60818965-60818984 None:intergenic 40.0%
GGCCAAAGTGATGAACTTAT+TGG + chr5_4:60818968-60818987 Msa0861470:CDS 40.0%
! ACAGAACACGTTCTGTTTTC+AGG - chr5_4:60819102-60819121 None:intergenic 40.0%
GTTCTGTTCTTACTACTCTG+TGG + chr5_4:60819115-60819134 Msa0861470:intron 40.0%
TCAAGGCAAGAGAAACTTGA+TGG + chr5_4:60819269-60819288 Msa0861470:intron 40.0%
GTTTACACTGTCTGCTTAAG+TGG + chr5_4:60819380-60819399 Msa0861470:intron 40.0%
GATGGGAACCAAGAACTAAA+TGG + chr5_4:60819423-60819442 Msa0861470:intron 40.0%
TCCAAATGGGAGGTTTAGTT+GGG - chr5_4:60819476-60819495 None:intergenic 40.0%
! TTCTTGGAGGAGAAAGCATA+TGG + chr5_4:60819511-60819530 Msa0861470:intron 40.0%
GGTAGTGCTGTGTAAAAAAC+TGG + chr5_4:60819845-60819864 Msa0861470:intron 40.0%
CACTAAAGTCTGGTCAGATT+TGG - chr5_4:60820372-60820391 None:intergenic 40.0%
ACAAACTGCTACCTATTCCA+AGG - chr5_4:60820433-60820452 None:intergenic 40.0%
AAGCCCTCCAGTAATATGAT+TGG + chr5_4:60820473-60820492 Msa0861470:intron 40.0%
CACCAGCTTCTTCTTTGATA+CGG + chr5_4:60820516-60820535 Msa0861470:intron 40.0%
ACCAGCTTCTTCTTTGATAC+GGG + chr5_4:60820517-60820536 Msa0861470:intron 40.0%
AAGTGTGTTAGAAAGCTGCA+GGG + chr5_4:60820644-60820663 Msa0861470:CDS 40.0%
ATTCGTGCACTACGTAAATG+GGG + chr5_4:60820706-60820725 Msa0861470:CDS 40.0%
! GTATACGCATAGCCTTTTTG+TGG + chr5_4:60821129-60821148 Msa0861470:intron 40.0%
TTTGTAAGCTACGTGAAGAG+TGG + chr5_4:60821231-60821250 Msa0861470:CDS 40.0%
ACGAAGTTAGGAAGATCTCA+AGG + chr5_4:60821286-60821305 Msa0861470:CDS 40.0%
AAGTTAGGAAGATCTCAAGG+TGG + chr5_4:60821289-60821308 Msa0861470:CDS 40.0%
AGTTAGGAAGATCTCAAGGT+GGG + chr5_4:60821290-60821309 Msa0861470:CDS 40.0%
TTGAGAGTGAGACAAGAGAA+TGG - chr5_4:60821332-60821351 None:intergenic 40.0%
! GACTGCCATGTTTCTTTTGT+TGG - chr5_4:60821361-60821380 None:intergenic 40.0%
!!! TACAGTTTTGGTGTCATCTC+TGG - chr5_4:60821531-60821550 None:intergenic 40.0%
AGAGATGACACCAAAACTGT+AGG + chr5_4:60821530-60821549 Msa0861470:three_prime_UTR 40.0%
ACAGCAAGTAGCGAAATGGA+AGG - chr5_4:60818160-60818179 None:intergenic 45.0%
GATCACAGCAAGTAGCGAAA+TGG - chr5_4:60818164-60818183 None:intergenic 45.0%
CACTACTCTGTGAATGGAAG+TGG + chr5_4:60818606-60818625 Msa0861470:five_prime_UTR 45.0%
TGGAAGTGGTTGTTGATGCT+TGG + chr5_4:60818620-60818639 Msa0861470:five_prime_UTR 45.0%
CGATCAATGGTAAACCCGAA+AGG + chr5_4:60818689-60818708 Msa0861470:exon 45.0%
ACACGATGATCTCACCTGAT+GGG - chr5_4:60818797-60818816 None:intergenic 45.0%
AACACGATGATCTCACCTGA+TGG - chr5_4:60818798-60818817 None:intergenic 45.0%
! TCATCGTGTTGTTGTTCCAC+TGG + chr5_4:60818808-60818827 Msa0861470:intron 45.0%
TCGAAGATGTGGTGAACAGA+CGG + chr5_4:60818903-60818922 Msa0861470:CDS 45.0%
GTTGATCTTAGTCGACCGAA+TGG + chr5_4:60818947-60818966 Msa0861470:CDS 45.0%
ACCCAACTAAACCTCCCATT+TGG + chr5_4:60819472-60819491 Msa0861470:intron 45.0%
CTCCAAATGGGAGGTTTAGT+TGG - chr5_4:60819477-60819496 None:intergenic 45.0%
GTAGTGGTGTCTGAAAGTAG+TGG + chr5_4:60819630-60819649 Msa0861470:intron 45.0%
ATATGCTGTAGAACCAACCG+AGG + chr5_4:60819717-60819736 Msa0861470:intron 45.0%
! ACCTTGGTTCGCTATGTTGT+GGG - chr5_4:60819769-60819788 None:intergenic 45.0%
! AACCTTGGTTCGCTATGTTG+TGG - chr5_4:60819770-60819789 None:intergenic 45.0%
GCGAACCAAGGTTCAAATTC+TGG + chr5_4:60819777-60819796 Msa0861470:intron 45.0%
ACCAAGGTTCAAATTCTGGC+TGG + chr5_4:60819781-60819800 Msa0861470:intron 45.0%
! CCAAGGTTCAAATTCTGGCT+GGG + chr5_4:60819782-60819801 Msa0861470:intron 45.0%
!! TGCCCACTTTTGTGTGAAAC+CGG + chr5_4:60819810-60819829 Msa0861470:intron 45.0%
TCCCGGTTTCACACAAAAGT+GGG - chr5_4:60819815-60819834 None:intergenic 45.0%
TTCCCGGTTTCACACAAAAG+TGG - chr5_4:60819816-60819835 None:intergenic 45.0%
GGTAGGAGTCATATAACTCC+TGG + chr5_4:60819913-60819932 Msa0861470:intron 45.0%
ATTACCTAATGGTCAGCGCT+TGG - chr5_4:60820194-60820213 None:intergenic 45.0%
TGTTCTAACACTGGGAGTAG+TGG + chr5_4:60820394-60820413 Msa0861470:CDS 45.0%
! TGGGAGTAGTGGAAGCATAT+AGG + chr5_4:60820405-60820424 Msa0861470:CDS 45.0%
! GGGAGTAGTGGAAGCATATA+GGG + chr5_4:60820406-60820425 Msa0861470:CDS 45.0%
! GGAGTAGTGGAAGCATATAG+GGG + chr5_4:60820407-60820426 Msa0861470:CDS 45.0%
! CAAAGAAGAAGCTGGTGATG+AGG - chr5_4:60820513-60820532 None:intergenic 45.0%
TCCCGTATCAAAGAAGAAGC+TGG - chr5_4:60820521-60820540 None:intergenic 45.0%
AGCTTCTTCTTTGATACGGG+AGG + chr5_4:60820520-60820539 Msa0861470:intron 45.0%
CAAGTGTGTTAGAAAGCTGC+AGG + chr5_4:60820643-60820662 Msa0861470:CDS 45.0%
TTCGTGCACTACGTAAATGG+GGG + chr5_4:60820707-60820726 Msa0861470:CDS 45.0%
ACTAATGACGCCGTCTAACT+AGG + chr5_4:60821059-60821078 Msa0861470:intron 45.0%
! CTACGTGAAGAGTGGCTTTA+AGG + chr5_4:60821239-60821258 Msa0861470:CDS 45.0%
AACTTCGTTCTTGCACAGCT+TGG - chr5_4:60821274-60821293 None:intergenic 45.0%
AGCTGTGCAAGAACGAAGTT+AGG + chr5_4:60821274-60821293 Msa0861470:CDS 45.0%
! ATGTGTGTGGCCTACAGTTT+TGG - chr5_4:60821543-60821562 None:intergenic 45.0%
CGAAGATGTGGTGAACAGAC+GGG + chr5_4:60818904-60818923 Msa0861470:CDS 50.0%
ACAGACGGGATATTGTGTCG+TGG + chr5_4:60818918-60818937 Msa0861470:CDS 50.0%
CAGACGGGATATTGTGTCGT+GGG + chr5_4:60818919-60818938 Msa0861470:CDS 50.0%
AGACGGGATATTGTGTCGTG+GGG + chr5_4:60818920-60818939 Msa0861470:CDS 50.0%
CTGTAGAACCAACCGAGGTT+GGG + chr5_4:60819722-60819741 Msa0861470:intron 50.0%
TCCCACAACATAGCGAACCA+AGG + chr5_4:60819765-60819784 Msa0861470:intron 50.0%
CCCAGCCAGAATTTGAACCT+TGG - chr5_4:60819785-60819804 None:intergenic 50.0%
! GTTCAAATTCTGGCTGGGAG+TGG + chr5_4:60819787-60819806 Msa0861470:intron 50.0%
!! GCCCACTTTTGTGTGAAACC+GGG + chr5_4:60819811-60819830 Msa0861470:intron 50.0%
GCATATAGGGGCCTTGGAAT+AGG + chr5_4:60820419-60820438 Msa0861470:CDS 50.0%
TCACGTGCAAGTAAACCGCT+CGG - chr5_4:60820577-60820596 None:intergenic 50.0%
TGCACTACGTAAATGGGGGA+CGG + chr5_4:60820711-60820730 Msa0861470:CDS 50.0%
TGCACTTACAATGGCGAGCA+AGG - chr5_4:60820740-60820759 None:intergenic 50.0%
!! GAAGAGTGGCTTTAAGGCAG+TGG + chr5_4:60821245-60821264 Msa0861470:CDS 50.0%
AACATGGCAGTCGAGTCTAC+TGG + chr5_4:60821369-60821388 Msa0861470:CDS 50.0%
TAAGAATGGGAGCCAACCCA+TGG - chr5_4:60821603-60821622 None:intergenic 50.0%
GCTGTAGAACCAACCGAGGT+TGG + chr5_4:60819721-60819740 Msa0861470:intron 55.0%
GCGCTTGGCACCAAAAGACT+AGG - chr5_4:60820179-60820198 None:intergenic 55.0%
! GTGGAAGCATATAGGGGCCT+TGG + chr5_4:60820413-60820432 Msa0861470:CDS 55.0%
AAGCATTCCAACGTGCCGAG+CGG + chr5_4:60820559-60820578 Msa0861470:CDS 55.0%
AAGTAAACCGCTCGGCACGT+TGG - chr5_4:60820569-60820588 None:intergenic 55.0%
CCAACCGAGGTTGGGTCTAG+CGG + chr5_4:60819730-60819749 Msa0861470:intron 60.0%
CGTTCCGCTAGACCCAACCT+CGG - chr5_4:60819737-60819756 None:intergenic 60.0%
CGAGGTTGGGTCTAGCGGAA+CGG + chr5_4:60819735-60819754 Msa0861470:intron 60.0%
GAGGTTGGGTCTAGCGGAAC+GGG + chr5_4:60819736-60819755 Msa0861470:intron 60.0%
!! GGTGCCAAGCGCTGACCATT+AGG + chr5_4:60820187-60820206 Msa0861470:intron 60.0%
CCGCTAGACCCAACCTCGGT+TGG - chr5_4:60819733-60819752 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60818104 60821718 60818104 ID=Msa0861470;Name=Msa0861470
chr5_4 mRNA 60818104 60821718 60818104 ID=Msa0861470-mRNA-1;Parent=Msa0861470;Name=Msa0861470-mRNA-1;_AED=0.24;_eAED=0.24;_QI=238|1|1|1|0.4|0.5|6|311|257
chr5_4 exon 60818104 60818212 60818104 ID=Msa0861470-mRNA-1:exon:18804;Parent=Msa0861470-mRNA-1
chr5_4 exon 60818566 60818801 60818566 ID=Msa0861470-mRNA-1:exon:18805;Parent=Msa0861470-mRNA-1
chr5_4 exon 60818886 60819030 60818886 ID=Msa0861470-mRNA-1:exon:18806;Parent=Msa0861470-mRNA-1
chr5_4 exon 60820341 60820440 60820341 ID=Msa0861470-mRNA-1:exon:18807;Parent=Msa0861470-mRNA-1
chr5_4 exon 60820522 60820750 60820522 ID=Msa0861470-mRNA-1:exon:18808;Parent=Msa0861470-mRNA-1
chr5_4 exon 60821215 60821718 60821215 ID=Msa0861470-mRNA-1:exon:18809;Parent=Msa0861470-mRNA-1
chr5_4 five_prime_UTR 60818104 60818212 60818104 ID=Msa0861470-mRNA-1:five_prime_utr;Parent=Msa0861470-mRNA-1
chr5_4 five_prime_UTR 60818566 60818694 60818566 ID=Msa0861470-mRNA-1:five_prime_utr;Parent=Msa0861470-mRNA-1
chr5_4 CDS 60818695 60818801 60818695 ID=Msa0861470-mRNA-1:cds;Parent=Msa0861470-mRNA-1
chr5_4 CDS 60818886 60819030 60818886 ID=Msa0861470-mRNA-1:cds;Parent=Msa0861470-mRNA-1
chr5_4 CDS 60820341 60820440 60820341 ID=Msa0861470-mRNA-1:cds;Parent=Msa0861470-mRNA-1
chr5_4 CDS 60820522 60820750 60820522 ID=Msa0861470-mRNA-1:cds;Parent=Msa0861470-mRNA-1
chr5_4 CDS 60821215 60821407 60821215 ID=Msa0861470-mRNA-1:cds;Parent=Msa0861470-mRNA-1
chr5_4 three_prime_UTR 60821408 60821718 60821408 ID=Msa0861470-mRNA-1:three_prime_utr;Parent=Msa0861470-mRNA-1
Gene Sequence

>Msa0861470

ATGGTAAACCCGAAAGGGTCTAGTCAATCAAAAATATGCTATCGGCCTATACGACCGTCTGATTTTGACGTTTTAGAGCGTATTCATGGTAGATTATTTCCCATCAGGTATGAATCTGCTTTTTTCGAAGATGTGGTGAACAGACGGGATATTGTGTCGTGGGGAGCAGTTGATCTTAGTCGACCGAATGGCCAAAGTGATGAACTTATTGGATTTGTAACAGCGCGGATTGTTCTTGCAAAAGAAAGTGAGATAGTGGATTTGCTTGGATATGACTCAGCCAAATCTGACCAGACTTTAGTGTATGTTCTAACACTGGGAGTAGTGGAAGCATATAGGGGCCTTGGAATAGCTTCTTCTTTGATACGGGAGGTCGTAAAGTATGCTTCAAGCATTCCAACGTGCCGAGCGGTTTACTTGCACGTGATTTCTTTCAATATCTCAGCAATCAATTTATACAAGAAAATGTCTTTCAAGTGTGTTAGAAAGCTGCAGGGCTTTTATTTTATCAATGGCCAACACTATGATTCATTTTTATTCGTGCACTACGTAAATGGGGGACGGTCTCCTTGCTCGCCATTACAGCTTCTCTCTGCATTTGTAAGCTACGTGAAGAGTGGCTTTAAGGCAGTGGCTGCCAAGCTGTGCAAGAACGAAGTTAGGAAGATCTCAAGGTGGGAAAAGTGTAGAGAAAGCCATTCTCTTGTCTCACTCTCAACAATACCCAACAAAAGAAACATGGCAGTCGAGTCTACTGGTTGTGAGTTTGTGTAA

Protein sequence

>Msa0861470

MVNPKGSSQSKICYRPIRPSDFDVLERIHGRLFPIRYESAFFEDVVNRRDIVSWGAVDLSRPNGQSDELIGFVTARIVLAKESEIVDLLGYDSAKSDQTLVYVLTLGVVEAYRGLGIASSLIREVVKYASSIPTCRAVYLHVISFNISAINLYKKMSFKCVRKLQGFYFINGQHYDSFLFVHYVNGGRSPCSPLQLLSAFVSYVKSGFKAVAAKLCKNEVRKISRWEKCRESHSLVSLSTIPNKRNMAVESTGCEFV*