Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923070 | XP_003620328.1 | 97.238 | 362 | 9 | 1 | 1 | 361 | 1 | 362 | 0.0 | 740 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923070 | sp|P0C042|Y4597_ARATH | 50.538 | 279 | 127 | 4 | 83 | 360 | 41 | 309 | 6.67e-92 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034540 | Msa0923070 | 0.801151 | 1.031013e-48 | -8.615850e-47 |
| Msa0804870 | Msa0923070 | 0.816849 | 4.474115e-52 | -8.615850e-47 |
| Msa0807020 | Msa0923070 | 0.816598 | 5.092169e-52 | -8.615850e-47 |
| Msa0832950 | Msa0923070 | 0.825009 | 5.919961e-54 | -8.615850e-47 |
| Msa0185100 | Msa0923070 | 0.846944 | 1.579569e-59 | -8.615850e-47 |
| Msa0193190 | Msa0923070 | 0.857724 | 1.342558e-62 | -8.615850e-47 |
| Msa0387040 | Msa0923070 | 0.801681 | 8.027140e-49 | -8.615850e-47 |
| Msa0247470 | Msa0923070 | 0.801473 | 8.857680e-49 | -8.615850e-47 |
| Msa0273070 | Msa0923070 | 0.844584 | 6.904918e-59 | -8.615850e-47 |
| Msa0306310 | Msa0923070 | 0.833376 | 5.526713e-56 | -8.615850e-47 |
| Msa0497120 | Msa0923070 | 0.838295 | 3.130974e-57 | -8.615850e-47 |
| Msa0896530 | Msa0923070 | 0.807803 | 4.228483e-50 | -8.615850e-47 |
| Msa0923070 | Msa0996380 | 0.847989 | 8.152945e-60 | -8.615850e-47 |
| Msa0923070 | Msa1027910 | 0.803514 | 3.361731e-49 | -8.615850e-47 |
| Msa0923070 | Msa1064240 | 0.813018 | 3.164818e-51 | -8.615850e-47 |
| Msa0923070 | Msa1084890 | 0.800677 | 1.288481e-48 | -8.615850e-47 |
| Msa0923070 | Msa1102210 | 0.801904 | 7.223685e-49 | -8.615850e-47 |
| Msa0923070 | Msa1132980 | 0.819742 | 9.900598e-53 | -8.615850e-47 |
| Msa0923070 | Msa1154240 | 0.820490 | 6.672163e-53 | -8.615850e-47 |
| Msa0923070 | Msa1435320 | 0.834040 | 3.771267e-56 | -8.615850e-47 |
| Msa0923070 | Msa1443400 | 0.834678 | 2.608382e-56 | -8.615850e-47 |
| Msa0923070 | Msa1448040 | 0.833682 | 4.635627e-56 | -8.615850e-47 |
| Msa0923070 | Msa1456000 | 0.814069 | 1.858324e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923070 | MtrunA17_Chr6g0481291 | 97.238 | 362 | 9 | 1 | 1 | 361 | 1 | 362 | 0.0 | 740 |
| Msa0923070 | MtrunA17_Chr1g0162921 | 51.506 | 332 | 152 | 3 | 36 | 360 | 47 | 376 | 3.17e-126 | 368 |
| Msa0923070 | MtrunA17_Chr1g0210841 | 56.597 | 288 | 121 | 2 | 73 | 360 | 64 | 347 | 3.33e-124 | 362 |
| Msa0923070 | MtrunA17_Chr1g0168191 | 41.751 | 297 | 158 | 6 | 78 | 361 | 58 | 352 | 2.10e-69 | 221 |
| Msa0923070 | MtrunA17_Chr8g0335991 | 38.279 | 337 | 178 | 8 | 48 | 357 | 20 | 353 | 2.32e-67 | 216 |
| Msa0923070 | MtrunA17_Chr7g0225581 | 33.088 | 272 | 176 | 5 | 93 | 360 | 1 | 270 | 3.35e-48 | 164 |
| Msa0923070 | MtrunA17_Chr7g0225571 | 32.117 | 274 | 175 | 7 | 93 | 360 | 1 | 269 | 6.26e-44 | 152 |
| Msa0923070 | MtrunA17_Chr8g0336021 | 41.429 | 140 | 80 | 1 | 205 | 342 | 1 | 140 | 4.56e-32 | 118 |
| Msa0923070 | MtrunA17_Chr8g0336001 | 38.272 | 162 | 98 | 1 | 201 | 360 | 3 | 164 | 1.98e-31 | 116 |
| Msa0923070 | MtrunA17_Chr8g0336011 | 38.554 | 166 | 86 | 5 | 50 | 200 | 22 | 186 | 9.31e-26 | 102 |
| Msa0923070 | MtrunA17_Chr8g0336031 | 39.844 | 128 | 69 | 3 | 80 | 200 | 57 | 183 | 2.40e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0923070 | AT1G14590.1 | 48.451 | 355 | 170 | 5 | 7 | 360 | 18 | 360 | 4.59e-123 | 360 |
| Msa0923070 | AT2G02061.2 | 57.246 | 276 | 116 | 2 | 87 | 361 | 111 | 385 | 4.04e-119 | 350 |
| Msa0923070 | AT2G02061.1 | 57.091 | 275 | 116 | 2 | 87 | 360 | 111 | 384 | 2.48e-118 | 348 |
| Msa0923070 | AT4G19975.1 | 49.852 | 337 | 151 | 4 | 33 | 360 | 26 | 353 | 2.03e-117 | 344 |
| Msa0923070 | AT5G44820.1 | 47.159 | 352 | 168 | 5 | 23 | 360 | 17 | 364 | 6.18e-114 | 336 |
| Msa0923070 | AT4G19970.1 | 43.363 | 339 | 176 | 6 | 34 | 360 | 41 | 375 | 2.47e-99 | 299 |
| Msa0923070 | AT4G15970.1 | 50.896 | 279 | 126 | 4 | 83 | 360 | 32 | 300 | 1.54e-93 | 283 |
| Msa0923070 | AT1G28700.1 | 37.748 | 302 | 170 | 6 | 67 | 361 | 36 | 326 | 6.22e-61 | 199 |
| Msa0923070 | AT1G28695.1 | 39.068 | 279 | 159 | 5 | 69 | 341 | 30 | 303 | 1.26e-59 | 196 |
| Msa0923070 | AT1G28710.1 | 37.329 | 292 | 170 | 6 | 59 | 341 | 27 | 314 | 2.21e-58 | 192 |
| Msa0923070 | AT1G28710.4 | 37.329 | 292 | 170 | 6 | 59 | 341 | 27 | 314 | 2.21e-58 | 192 |
| Msa0923070 | AT1G28710.3 | 37.329 | 292 | 170 | 6 | 59 | 341 | 27 | 314 | 2.21e-58 | 192 |
| Msa0923070 | AT5G40900.1 | 34.615 | 286 | 159 | 7 | 84 | 361 | 57 | 322 | 1.97e-46 | 161 |
Find 64 sgRNAs with CRISPR-Local
Find 383 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTGGTTCTACAAATTT+TGG | 0.142477 | 6_2:+62876770 | Msa0923070:CDS |
| AAGCTTCTTATTTGTAATTA+AGG | 0.172101 | 6_2:-62876860 | None:intergenic |
| TTCTTAAGCACAAGCTATTT+TGG | 0.185065 | 6_2:+62876892 | Msa0923070:CDS |
| AACAATTCTGCTTCTCCTTT+TGG | 0.199551 | 6_2:+62869823 | Msa0923070:CDS |
| TCTTGGTGCTGTTCTTCATT+TGG | 0.209687 | 6_2:+62875439 | Msa0923070:CDS |
| TGTCAATCTAGCAAGGATTT+TGG | 0.246249 | 6_2:+62876922 | Msa0923070:CDS |
| CTTGGTGCTGTTCTTCATTT+GGG | 0.259335 | 6_2:+62875440 | Msa0923070:CDS |
| TTGTAGAACCAAATTGTTCT+TGG | 0.269685 | 6_2:-62876763 | None:intergenic |
| AAAACAAAGGGAATTGGAAT+TGG | 0.303312 | 6_2:-62869382 | None:intergenic |
| AATCAAATCCAAGAACAATT+TGG | 0.309827 | 6_2:+62876755 | Msa0923070:CDS |
| AGCTTCTTATTTGTAATTAA+GGG | 0.327364 | 6_2:-62876859 | None:intergenic |
| ATTGCTTGTGATTATTTCAA+TGG | 0.335617 | 6_2:+62876682 | Msa0923070:CDS |
| GTTGTTTGTTTGGTACTCTT+TGG | 0.338268 | 6_2:-62869444 | None:intergenic |
| AAAGTTTGAGGTTGTTTGTT+TGG | 0.339870 | 6_2:-62869454 | None:intergenic |
| TGGAGAAGAATTGAATTTCT+TGG | 0.355189 | 6_2:+62875422 | Msa0923070:CDS |
| CAAATAAGAAGCTTAAGATT+AGG | 0.357408 | 6_2:+62876869 | Msa0923070:CDS |
| TTAAGAACACTCTTTAGCTT+TGG | 0.370284 | 6_2:-62875125 | None:intergenic |
| CCATGACTTGTTCCCTTCTC+CGG | 0.386963 | 6_2:-62869704 | None:intergenic |
| TGCTAATTGTTGTGTTGGCT+TGG | 0.407831 | 6_2:+62876963 | Msa0923070:CDS |
| ACATATGTGAATCCTCCATT+TGG | 0.413713 | 6_2:-62876730 | None:intergenic |
| AAACAAAGGGAATTGGAATT+GGG | 0.421877 | 6_2:-62869381 | None:intergenic |
| GGGATATAGCTTTGTGTTCA+CGG | 0.424554 | 6_2:+62875460 | Msa0923070:CDS |
| AACAAGTCATGGAAGTCAAT+TGG | 0.426656 | 6_2:+62869715 | Msa0923070:CDS |
| TGAGGATTGGAAGAAGTATA+TGG | 0.432395 | 6_2:+62877017 | Msa0923070:CDS |
| CCTCAAACTTTGTTTATACT+AGG | 0.433343 | 6_2:+62869466 | Msa0923070:five_prime_UTR |
| AAAGTTTGTATAAAGAGAAA+CGG | 0.438035 | 6_2:-62869358 | None:intergenic |
| AAGTTTGTATAAAGAGAAAC+GGG | 0.439700 | 6_2:-62869357 | None:intergenic |
| TCTTTGTAAAATTGTTTGAA+TGG | 0.440475 | 6_2:-62876646 | None:intergenic |
| TCATGGAAGTCAATTGGAAC+AGG | 0.450424 | 6_2:+62869721 | Msa0923070:CDS |
| TGTTATCAACTTCAAACTAA+AGG | 0.454059 | 6_2:+62875344 | Msa0923070:CDS |
| AAGTAATGTGAGATAGTAGC+AGG | 0.464851 | 6_2:-62869850 | None:intergenic |
| ACATCTTGATCATGCATAGT+TGG | 0.467730 | 6_2:-62876814 | None:intergenic |
| ATAGTAGCAGGAAGACCAAA+AGG | 0.473505 | 6_2:-62869838 | None:intergenic |
| ACTATCTCACATTACTTCAA+TGG | 0.475598 | 6_2:+62869856 | Msa0923070:CDS |
| GTCGACAACGTTGCCGGAGA+AGG | 0.482918 | 6_2:+62869691 | Msa0923070:CDS |
| TCTCCACATCATATGTAAGT+AGG | 0.491164 | 6_2:-62875405 | None:intergenic |
| CCTAGTATAAACAAAGTTTG+AGG | 0.499988 | 6_2:-62869466 | None:intergenic |
| GGTGCCGTCGACAACGTTGC+CGG | 0.503886 | 6_2:+62869685 | Msa0923070:CDS |
| TTTGTTTGGTACTCTTTGGA+AGG | 0.509625 | 6_2:-62869440 | None:intergenic |
| GGCAACGTTGTCGACGGCAC+CGG | 0.511091 | 6_2:-62869683 | None:intergenic |
| TGGATAGTTGTGCATGTCAA+AGG | 0.516348 | 6_2:-62876710 | None:intergenic |
| CCGGAGAAGGGAACAAGTCA+TGG | 0.519589 | 6_2:+62869704 | Msa0923070:CDS |
| CACATCATATGTAAGTAGGT+TGG | 0.519993 | 6_2:-62875401 | None:intergenic |
| ATGCATGCTAATTGTTGTGT+TGG | 0.526017 | 6_2:+62876958 | Msa0923070:CDS |
| GACATGCACAACTATCCAAA+TGG | 0.526709 | 6_2:+62876715 | Msa0923070:CDS |
| TCTTAAACAAGCATCAATGA+AGG | 0.526752 | 6_2:+62875142 | Msa0923070:CDS |
| AATTGATCAAATATTGAACC+TGG | 0.540784 | 6_2:-62875209 | None:intergenic |
| TCGACAACGTTGCCGGAGAA+GGG | 0.550988 | 6_2:+62869692 | Msa0923070:CDS |
| TTCTCCGGCAACGTTGTCGA+CGG | 0.559557 | 6_2:-62869689 | None:intergenic |
| TCACCACATTGAATGATGCA+TGG | 0.575011 | 6_2:+62875180 | Msa0923070:CDS |
| ATCACCTTGTGGTAATAACA+TGG | 0.579094 | 6_2:+62875279 | Msa0923070:CDS |
| CACCACATTGAATGATGCAT+GGG | 0.590967 | 6_2:+62875181 | Msa0923070:CDS |
| CAACCTACTTACATATGATG+TGG | 0.592371 | 6_2:+62875402 | Msa0923070:CDS |
| CTTAAACAAGCATCAATGAA+GGG | 0.599814 | 6_2:+62875143 | Msa0923070:CDS |
| AATGATGCATGGGCTGAACC+AGG | 0.607742 | 6_2:+62875191 | Msa0923070:CDS |
| AAGAATCATTATGCTGCTGC+CGG | 0.609890 | 6_2:+62869664 | Msa0923070:CDS |
| TTGTGTTGGCTTGGAGAACA+AGG | 0.616497 | 6_2:+62876972 | Msa0923070:CDS |
| GGTCCCATGTTATTACCACA+AGG | 0.634590 | 6_2:-62875283 | None:intergenic |
| TGCAGGACACGGATATAATG+TGG | 0.645725 | 6_2:+62876614 | Msa0923070:intron |
| ATACACATACACCTTAGTGT+TGG | 0.655004 | 6_2:+62869526 | Msa0923070:five_prime_UTR |
| TCACCTTGTGGTAATAACAT+GGG | 0.656323 | 6_2:+62875280 | Msa0923070:CDS |
| ATGCACAACTATCCAAATGG+AGG | 0.677945 | 6_2:+62876718 | Msa0923070:CDS |
| AAAGCTATTAGATCACCTTG+TGG | 0.716909 | 6_2:+62875268 | Msa0923070:CDS |
| AGCCCATGCATCATTCAATG+TGG | 0.718468 | 6_2:-62875183 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAAATAAATTTTATAT+TGG | - | chr6_2:62872458-62872477 | None:intergenic | 0.0% |
| !!! | TATTTTCTCAATTTTAATTT+TGG | + | chr6_2:62870752-62870771 | Msa0923070:intron | 10.0% |
| !!! | AAGGTTTTAATTTATTTTTT+TGG | - | chr6_2:62871625-62871644 | None:intergenic | 10.0% |
| !!! | ATTTTATGTAAAAAAATTTG+AGG | + | chr6_2:62872786-62872805 | Msa0923070:intron | 10.0% |
| !!! | TTTTATGTAAAAAAATTTGA+GGG | + | chr6_2:62872787-62872806 | Msa0923070:intron | 10.0% |
| !! | CATCAAAATAAAATAAAAAT+TGG | + | chr6_2:62872900-62872919 | Msa0923070:intron | 10.0% |
| !! | CTGTTATTATATTATTATAT+TGG | - | chr6_2:62873026-62873045 | None:intergenic | 10.0% |
| !!! | AACAAAAAAAAATATTTTAG+AGG | - | chr6_2:62873284-62873303 | None:intergenic | 10.0% |
| !!! | AGTTTTTAATAATATTTTAG+AGG | - | chr6_2:62873314-62873333 | None:intergenic | 10.0% |
| !!! | TTGTTTTAATTTGTTTTTAT+AGG | + | chr6_2:62873372-62873391 | Msa0923070:intron | 10.0% |
| !!! | GTATTTTTACATTTTTTTTA+AGG | + | chr6_2:62873426-62873445 | Msa0923070:intron | 10.0% |
| !!! | AATATATTAATTTCACTTTT+TGG | + | chr6_2:62873956-62873975 | Msa0923070:intron | 10.0% |
| !!! | ATTTTTGATATATAATATAG+TGG | + | chr6_2:62874032-62874051 | Msa0923070:intron | 10.0% |
| !!! | TTTTTGATATATAATATAGT+GGG | + | chr6_2:62874033-62874052 | Msa0923070:intron | 10.0% |
| !! | ATGAAGAAAAAAAAAACAAA+GGG | - | chr6_2:62869397-62869416 | None:intergenic | 15.0% |
| !!! | ATCAAAAAAGTTGATTTTTT+TGG | + | chr6_2:62869973-62869992 | Msa0923070:intron | 15.0% |
| !!! | TCAAAAAAGTTGATTTTTTT+GGG | + | chr6_2:62869974-62869993 | Msa0923070:intron | 15.0% |
| !!! | AAAAAATTCAACTTTTTGAA+TGG | - | chr6_2:62870024-62870043 | None:intergenic | 15.0% |
| !!! | TTAATTTTGTGTTATTTTTG+TGG | + | chr6_2:62870042-62870061 | Msa0923070:intron | 15.0% |
| !!! | AAGAAATTCAACTTTTTAAT+TGG | - | chr6_2:62870070-62870089 | None:intergenic | 15.0% |
| !! | TTGATTGATTAATAAAAAGA+AGG | + | chr6_2:62870464-62870483 | Msa0923070:intron | 15.0% |
| !!! | TCAATTTTAATTTTGGATTT+TGG | + | chr6_2:62870759-62870778 | Msa0923070:intron | 15.0% |
| !! | TCAAGGAATATTATAAAAAT+GGG | - | chr6_2:62870832-62870851 | None:intergenic | 15.0% |
| !! | TTCAAGGAATATTATAAAAA+TGG | - | chr6_2:62870833-62870852 | None:intergenic | 15.0% |
| !!! | TAAAATAGTTTTAGTGAAAA+AGG | + | chr6_2:62870994-62871013 | Msa0923070:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr6_2:62871190-62871209 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr6_2:62871191-62871210 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr6_2:62871255-62871274 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr6_2:62871256-62871275 | None:intergenic | 15.0% |
| !! | GAGGTAATATTATTTATTTA+AGG | + | chr6_2:62871317-62871336 | Msa0923070:intron | 15.0% |
| !! | AATTAATGTTGTGATAATTT+AGG | - | chr6_2:62871429-62871448 | None:intergenic | 15.0% |
| !! | AAACAAGAATTCATATTATT+AGG | - | chr6_2:62872174-62872193 | None:intergenic | 15.0% |
| !!! | AATAATATGAATTCTTGTTT+AGG | + | chr6_2:62872174-62872193 | Msa0923070:intron | 15.0% |
| !!! | ATAATATGAATTCTTGTTTA+GGG | + | chr6_2:62872175-62872194 | Msa0923070:intron | 15.0% |
| !!! | ATTTATTTTTAAGAATCATG+GGG | - | chr6_2:62872542-62872561 | None:intergenic | 15.0% |
| !!! | GATTTATTTTTAAGAATCAT+GGG | - | chr6_2:62872543-62872562 | None:intergenic | 15.0% |
| !!! | TGATTTATTTTTAAGAATCA+TGG | - | chr6_2:62872544-62872563 | None:intergenic | 15.0% |
| !!! | ATCAATTACAAACAAAATTT+TGG | + | chr6_2:62872688-62872707 | Msa0923070:intron | 15.0% |
| !! | TCATCATAATTATTTACTAT+TGG | + | chr6_2:62873613-62873632 | Msa0923070:intron | 15.0% |
| !!! | ACATTTATTAACCTTTTAAT+CGG | - | chr6_2:62873857-62873876 | None:intergenic | 15.0% |
| !! | ATATAGAGAAAATTAAGATT+GGG | + | chr6_2:62875536-62875555 | Msa0923070:intron | 15.0% |
| !!! | ATAAGTTTTGATATATCTAT+AGG | + | chr6_2:62875921-62875940 | Msa0923070:intron | 15.0% |
| !! | AAAAATAGTTGAAAAAACTT+GGG | - | chr6_2:62876070-62876089 | None:intergenic | 15.0% |
| !! | TAAAAATAGTTGAAAAAACT+TGG | - | chr6_2:62876071-62876090 | None:intergenic | 15.0% |
| !!! | TTATTTTATAAGCTCTTTTA+AGG | - | chr6_2:62876334-62876353 | None:intergenic | 15.0% |
| !! | TATATCAATTTATATTGTGA+AGG | + | chr6_2:62876479-62876498 | Msa0923070:intron | 15.0% |
| !! | ATATCAATTTATATTGTGAA+GGG | + | chr6_2:62876480-62876499 | Msa0923070:intron | 15.0% |
| !! | AAAGTTTGTATAAAGAGAAA+CGG | - | chr6_2:62869361-62869380 | None:intergenic | 20.0% |
| !! | AAAAAAAAAACAAAGGGAAT+TGG | - | chr6_2:62869391-62869410 | None:intergenic | 20.0% |
| !! | GATGAAGAAAAAAAAAACAA+AGG | - | chr6_2:62869398-62869417 | None:intergenic | 20.0% |
| !! | TTATACAATTCTATACTTCA+AGG | - | chr6_2:62870849-62870868 | None:intergenic | 20.0% |
| !!! | GCAAGTTTTTTTTTTTTTAG+AGG | + | chr6_2:62870909-62870928 | Msa0923070:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr6_2:62871121-62871140 | None:intergenic | 20.0% |
| !! | TATTGAAAATTGAAATGAGT+CGG | - | chr6_2:62871153-62871172 | None:intergenic | 20.0% |
| !! | TCAGACAAAAATCATATTAT+TGG | + | chr6_2:62871547-62871566 | Msa0923070:intron | 20.0% |
| !! | AAAAAATATCAATTGATGCA+GGG | - | chr6_2:62871717-62871736 | None:intergenic | 20.0% |
| !!! | ATTACAAACAAAATTTTGGA+AGG | + | chr6_2:62872692-62872711 | Msa0923070:intron | 20.0% |
| !! | TCAGATAAGTATATATGAAA+AGG | - | chr6_2:62872855-62872874 | None:intergenic | 20.0% |
| !!! | AAATTATTTAAAATGACCTG+TGG | + | chr6_2:62873110-62873129 | Msa0923070:intron | 20.0% |
| !! | AAATGTAAAAATACAAGTTG+AGG | - | chr6_2:62873420-62873439 | None:intergenic | 20.0% |
| !! | ATAGATGAAAATAATTGTGT+TGG | + | chr6_2:62873675-62873694 | Msa0923070:intron | 20.0% |
| !! | AATAATTGTTGGATTGAAAT+TGG | + | chr6_2:62873741-62873760 | Msa0923070:intron | 20.0% |
| !!! | AATTTGAATTCTTAAGTTGT+TGG | + | chr6_2:62873881-62873900 | Msa0923070:intron | 20.0% |
| !!! | AATTGTACATGAATTTTTAG+TGG | - | chr6_2:62874215-62874234 | None:intergenic | 20.0% |
| !! | AAATTCATGACATCAAAAAA+TGG | - | chr6_2:62874467-62874486 | None:intergenic | 20.0% |
| !!! | TGTTTGATTATTGGTAATTT+AGG | + | chr6_2:62874598-62874617 | Msa0923070:intron | 20.0% |
| !! | AGAAAACTAAAGTTACAATT+TGG | - | chr6_2:62874666-62874685 | None:intergenic | 20.0% |
| !!! | TAAAATTCTAGCTTCAAATT+AGG | + | chr6_2:62874841-62874860 | Msa0923070:intron | 20.0% |
| !! | CATATAGAGAAAATTAAGAT+TGG | + | chr6_2:62875535-62875554 | Msa0923070:intron | 20.0% |
| !!! | TCATTTTCTCAAATTATTGT+CGG | - | chr6_2:62875691-62875710 | None:intergenic | 20.0% |
| !!! | TATTTGAATAAGTCCTTTTA+TGG | + | chr6_2:62875952-62875971 | Msa0923070:intron | 20.0% |
| !!! | ATTTGAATAAGTCCTTTTAT+GGG | + | chr6_2:62875953-62875972 | Msa0923070:intron | 20.0% |
| !! | AAAATAGTTGAAAAAACTTG+GGG | - | chr6_2:62876069-62876088 | None:intergenic | 20.0% |
| !! | TATCAATTTATATTGTGAAG+GGG | + | chr6_2:62876481-62876500 | Msa0923070:intron | 20.0% |
| !!! | AAATTTTAATGTGTCAATTG+TGG | - | chr6_2:62876560-62876579 | None:intergenic | 20.0% |
| !!! | CAATTGACACATTAAAATTT+TGG | + | chr6_2:62876560-62876579 | Msa0923070:intron | 20.0% |
| !! | TCTTTGTAAAATTGTTTGAA+TGG | - | chr6_2:62876649-62876668 | None:intergenic | 20.0% |
| !!! | AGCTTCTTATTTGTAATTAA+GGG | - | chr6_2:62876862-62876881 | None:intergenic | 20.0% |
| !!! | AAGCTTCTTATTTGTAATTA+AGG | - | chr6_2:62876863-62876882 | None:intergenic | 20.0% |
| ! | AAGTTTGTATAAAGAGAAAC+GGG | - | chr6_2:62869360-62869379 | None:intergenic | 25.0% |
| !! | TTTTTGTGACACAACAATTA+AGG | + | chr6_2:62869628-62869647 | Msa0923070:five_prime_UTR | 25.0% |
| !! | TGATTTGCAATTAGAATTCT+GGG | + | chr6_2:62869926-62869945 | Msa0923070:intron | 25.0% |
| !!! | GGTTTTGTGTATTATTTTGT+GGG | + | chr6_2:62869947-62869966 | Msa0923070:intron | 25.0% |
| !!! | GTTGAATTTCTTGTTTTTGA+TGG | + | chr6_2:62870078-62870097 | Msa0923070:intron | 25.0% |
| !! | GATTAGAAGATTCATTGATT+TGG | + | chr6_2:62870586-62870605 | Msa0923070:intron | 25.0% |
| !! | TGATTTGGAATGAGAAAATA+AGG | + | chr6_2:62870601-62870620 | Msa0923070:intron | 25.0% |
| !! | GATTTGGAATGAGAAAATAA+GGG | + | chr6_2:62870602-62870621 | Msa0923070:intron | 25.0% |
| !!! | AGTGAAAAAGGTATTAAAGA+AGG | + | chr6_2:62871006-62871025 | Msa0923070:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr6_2:62871122-62871141 | None:intergenic | 25.0% |
| ! | TGTATAAATAAAGGGAAAAG+TGG | - | chr6_2:62871247-62871266 | None:intergenic | 25.0% |
| ! | AATTAAGGTTAAATGTGTCA+CGG | - | chr6_2:62871583-62871602 | None:intergenic | 25.0% |
| ! | TCTATCAAAATTAAGAACCA+TGG | - | chr6_2:62871657-62871676 | None:intergenic | 25.0% |
| ! | GAAAAAATATCAATTGATGC+AGG | - | chr6_2:62871718-62871737 | None:intergenic | 25.0% |
| ! | GAAAATAATTTAGTAGCAGA+TGG | - | chr6_2:62871878-62871897 | None:intergenic | 25.0% |
| ! | CAAAAGAATAAGATGTTTGA+TGG | + | chr6_2:62871931-62871950 | Msa0923070:intron | 25.0% |
| ! | ATTCATTATTCATGCATATG+TGG | + | chr6_2:62872500-62872519 | Msa0923070:intron | 25.0% |
| ! | TTCATTATTCATGCATATGT+GGG | + | chr6_2:62872501-62872520 | Msa0923070:intron | 25.0% |
| !! | AGTGTTCTTCTTTCTAATTT+TGG | + | chr6_2:62872614-62872633 | Msa0923070:intron | 25.0% |
| !! | GTGTTCTTCTTTCTAATTTT+GGG | + | chr6_2:62872615-62872634 | Msa0923070:intron | 25.0% |
| !! | TGGAAGGAAAAAAAAACTTT+TGG | + | chr6_2:62872708-62872727 | Msa0923070:intron | 25.0% |
| ! | TAAAATTCTGAGTTTGAATC+TGG | + | chr6_2:62872821-62872840 | Msa0923070:intron | 25.0% |
| ! | AAAATTCTGAGTTTGAATCT+GGG | + | chr6_2:62872822-62872841 | Msa0923070:intron | 25.0% |
| !!! | TTATTTTGATGTTAGTCTAG+TGG | - | chr6_2:62872891-62872910 | None:intergenic | 25.0% |
| ! | AAATTATATATGTTAGCACG+TGG | - | chr6_2:62873487-62873506 | None:intergenic | 25.0% |
| ! | ATTATGATGAAAGAACAATG+TGG | - | chr6_2:62873603-62873622 | None:intergenic | 25.0% |
| ! | GTCAACACATAAATAATTGT+TGG | + | chr6_2:62873730-62873749 | Msa0923070:intron | 25.0% |
| ! | ACCATAAAACTAACTATAGA+AGG | + | chr6_2:62873932-62873951 | Msa0923070:intron | 25.0% |
| ! | AAAAAGGATAGTAGACATTA+TGG | - | chr6_2:62874009-62874028 | None:intergenic | 25.0% |
| !! | GATATATAATATAGTGGGAA+AGG | + | chr6_2:62874038-62874057 | Msa0923070:intron | 25.0% |
| !! | ATAAAGGGATATATTTTCCT+TGG | + | chr6_2:62874062-62874081 | Msa0923070:intron | 25.0% |
| ! | TATATCACCATTATTGAAGA+TGG | - | chr6_2:62874111-62874130 | None:intergenic | 25.0% |
| ! | CTATATATAGAAATGTAGAG+TGG | - | chr6_2:62874153-62874172 | None:intergenic | 25.0% |
| ! | CACTCTACATTTCTATATAT+AGG | + | chr6_2:62874151-62874170 | Msa0923070:intron | 25.0% |
| ! | ATTTCTATATATAGGCTCAT+AGG | + | chr6_2:62874159-62874178 | Msa0923070:intron | 25.0% |
| !! | TTTTTACCTCAAATAGCTTT+AGG | + | chr6_2:62874233-62874252 | Msa0923070:intron | 25.0% |
| ! | CATTTACTTATATACACAAG+TGG | - | chr6_2:62874261-62874280 | None:intergenic | 25.0% |
| ! | CACTTGTGTATATAAGTAAA+TGG | + | chr6_2:62874259-62874278 | Msa0923070:intron | 25.0% |
| ! | TTGTGTATATAAGTAAATGG+AGG | + | chr6_2:62874262-62874281 | Msa0923070:intron | 25.0% |
| ! | TGTGTATATAAGTAAATGGA+GGG | + | chr6_2:62874263-62874282 | Msa0923070:intron | 25.0% |
| !!! | GTTATTGACTTCAAATTTGA+TGG | + | chr6_2:62874352-62874371 | Msa0923070:intron | 25.0% |
| ! | TCAAAAAATGGTTAGGATTT+AGG | - | chr6_2:62874455-62874474 | None:intergenic | 25.0% |
| !!! | GATGTCATGAATTTTAACAA+AGG | + | chr6_2:62874473-62874492 | Msa0923070:intron | 25.0% |
| !! | TGATTATTGGTAATTTAGGT+TGG | + | chr6_2:62874602-62874621 | Msa0923070:intron | 25.0% |
| ! | TAAGACATCATTAAACACTT+AGG | - | chr6_2:62875077-62875096 | None:intergenic | 25.0% |
| ! | GTCTTATATGTTTATGTAAC+AGG | + | chr6_2:62875091-62875110 | Msa0923070:intron | 25.0% |
| ! | AATTGATCAAATATTGAACC+TGG | - | chr6_2:62875212-62875231 | None:intergenic | 25.0% |
| !! | TTTCTTGAGAGTTTTCAAAT+TGG | + | chr6_2:62875230-62875249 | Msa0923070:CDS | 25.0% |
| ! | TGTTATCAACTTCAAACTAA+AGG | + | chr6_2:62875344-62875363 | Msa0923070:CDS | 25.0% |
| ! | ATTCATAGTTACTTGTGTAA+GGG | + | chr6_2:62875559-62875578 | Msa0923070:intron | 25.0% |
| !! | TCTCCAAGTTTTTCATTATA+AGG | + | chr6_2:62875611-62875630 | Msa0923070:intron | 25.0% |
| !! | CTCCAAGTTTTTCATTATAA+GGG | + | chr6_2:62875612-62875631 | Msa0923070:intron | 25.0% |
| !! | TCCAAGTTTTTCATTATAAG+GGG | + | chr6_2:62875613-62875632 | Msa0923070:intron | 25.0% |
| !!! | TTTGATTATCTTTTGAAGCA+CGG | + | chr6_2:62875651-62875670 | Msa0923070:intron | 25.0% |
| ! | TTCAATGTAATCATATGTGT+CGG | + | chr6_2:62875716-62875735 | Msa0923070:intron | 25.0% |
| ! | TTCAATGTAATCATATGTGT+CGG | + | chr6_2:62875716-62875735 | Msa0923070:intron | 25.0% |
| ! | AAAAGAAGAAAAATCTGCAT+AGG | - | chr6_2:62876215-62876234 | None:intergenic | 25.0% |
| !! | TCTAAATAGCTTTTTGTCAT+AGG | + | chr6_2:62876397-62876416 | Msa0923070:intron | 25.0% |
| ! | ATTGCTTGTGATTATTTCAA+TGG | + | chr6_2:62876682-62876701 | Msa0923070:CDS | 25.0% |
| ! | AATCAAATCCAAGAACAATT+TGG | + | chr6_2:62876755-62876774 | Msa0923070:CDS | 25.0% |
| !!! | CAATTTGGTTCTACAAATTT+TGG | + | chr6_2:62876770-62876789 | Msa0923070:CDS | 25.0% |
| ! | CAAATAAGAAGCTTAAGATT+AGG | + | chr6_2:62876869-62876888 | Msa0923070:CDS | 25.0% |
| AAACAAAGGGAATTGGAATT+GGG | - | chr6_2:62869384-62869403 | None:intergenic | 30.0% | |
| AAAACAAAGGGAATTGGAAT+TGG | - | chr6_2:62869385-62869404 | None:intergenic | 30.0% | |
| ! | AAAGTTTGAGGTTGTTTGTT+TGG | - | chr6_2:62869457-62869476 | None:intergenic | 30.0% |
| CCTAGTATAAACAAAGTTTG+AGG | - | chr6_2:62869469-62869488 | None:intergenic | 30.0% | |
| ! | CCTCAAACTTTGTTTATACT+AGG | + | chr6_2:62869466-62869485 | Msa0923070:five_prime_UTR | 30.0% |
| ACTATCTCACATTACTTCAA+TGG | + | chr6_2:62869856-62869875 | Msa0923070:CDS | 30.0% | |
| ! | GTGATTTGCAATTAGAATTC+TGG | + | chr6_2:62869925-62869944 | Msa0923070:intron | 30.0% |
| !! | GGGTTTTGTGTATTATTTTG+TGG | + | chr6_2:62869946-62869965 | Msa0923070:intron | 30.0% |
| !! | TTGACTTGGAGAATCAAAAT+TGG | - | chr6_2:62870137-62870156 | None:intergenic | 30.0% |
| !! | TATCATAAACCGATTTTGTC+AGG | + | chr6_2:62870272-62870291 | Msa0923070:intron | 30.0% |
| !!! | TGCCTATTTTGTTTTTTGAG+TGG | + | chr6_2:62870300-62870319 | Msa0923070:intron | 30.0% |
| CACCACTCAAAAAACAAAAT+AGG | - | chr6_2:62870305-62870324 | None:intergenic | 30.0% | |
| CATCATCATCATCACTATTT+AGG | - | chr6_2:62870372-62870391 | None:intergenic | 30.0% | |
| ! | ATGATGATGTGTGTAATAGT+AGG | + | chr6_2:62870383-62870402 | Msa0923070:intron | 30.0% |
| ! | AATAAGGGCTAGTAGAAAAT+AGG | + | chr6_2:62870617-62870636 | Msa0923070:intron | 30.0% |
| TAGTAGAAAATAGGTACTAG+TGG | + | chr6_2:62870626-62870645 | Msa0923070:intron | 30.0% | |
| ! | AAAGATTACGTTTGCTGATT+TGG | + | chr6_2:62870685-62870704 | Msa0923070:intron | 30.0% |
| AATCATAAGCAAGTTGTGAT+TGG | + | chr6_2:62870934-62870953 | Msa0923070:intron | 30.0% | |
| !! | GAAAAAGGTATTAAAGAAGG+AGG | + | chr6_2:62871009-62871028 | Msa0923070:intron | 30.0% |
| !! | TGAAATGAGTCGGTTATTTT+AGG | - | chr6_2:62871143-62871162 | None:intergenic | 30.0% |
| ! | TGTGGATATGTTCACATTTT+AGG | - | chr6_2:62871778-62871797 | None:intergenic | 30.0% |
| AAAATGTGAACATATCCACA+AGG | + | chr6_2:62871778-62871797 | Msa0923070:intron | 30.0% | |
| TAATTTAGTAGCAGATGGTT+AGG | - | chr6_2:62871873-62871892 | None:intergenic | 30.0% | |
| TCATTATTCATGCATATGTG+GGG | + | chr6_2:62872502-62872521 | Msa0923070:intron | 30.0% | |
| TTTAAGAATCATGGGGATTT+AGG | - | chr6_2:62872535-62872554 | None:intergenic | 30.0% | |
| CAGTATAAAAGTCATTCATG+TGG | + | chr6_2:62873043-62873062 | Msa0923070:intron | 30.0% | |
| !!! | TGGACCACATGTTATTTTAT+TGG | + | chr6_2:62873063-62873082 | Msa0923070:intron | 30.0% |
| GTCACCAATAAAATAACATG+TGG | - | chr6_2:62873070-62873089 | None:intergenic | 30.0% | |
| AACTTAAATCACAAAACCAC+AGG | - | chr6_2:62873129-62873148 | None:intergenic | 30.0% | |
| TTGCATGTTTGTGACAATAT+TGG | + | chr6_2:62873457-62873476 | Msa0923070:intron | 30.0% | |
| ! | GTTGACTCTATGAATAAAGT+GGG | - | chr6_2:62873716-62873735 | None:intergenic | 30.0% |
| !! | TGTTGACTCTATGAATAAAG+TGG | - | chr6_2:62873717-62873736 | None:intergenic | 30.0% |
| !! | ATGTTCGTTGATTCGAAATT+AGG | - | chr6_2:62873823-62873842 | None:intergenic | 30.0% |
| ! | CGATGTATTTACCGATTAAA+AGG | + | chr6_2:62873843-62873862 | Msa0923070:intron | 30.0% |
| !!! | GCCTTCTATAGTTAGTTTTA+TGG | - | chr6_2:62873936-62873955 | None:intergenic | 30.0% |
| ATAGTAGACATTATGGATCA+TGG | - | chr6_2:62874002-62874021 | None:intergenic | 30.0% | |
| ! | ATATAGTGGGAAAGGAATAA+AGG | + | chr6_2:62874046-62874065 | Msa0923070:intron | 30.0% |
| ! | TATAGTGGGAAAGGAATAAA+GGG | + | chr6_2:62874047-62874066 | Msa0923070:intron | 30.0% |
| CAAAGAATAATATCCTACCA+AGG | - | chr6_2:62874082-62874101 | None:intergenic | 30.0% | |
| TGGTAGGATATTATTCTTTG+AGG | + | chr6_2:62874082-62874101 | Msa0923070:intron | 30.0% | |
| GTGTATATAAGTAAATGGAG+GGG | + | chr6_2:62874264-62874283 | Msa0923070:intron | 30.0% | |
| TGTATATAAGTAAATGGAGG+GGG | + | chr6_2:62874265-62874284 | Msa0923070:intron | 30.0% | |
| !!! | GATGGCTTTAATGTACTTTT+TGG | + | chr6_2:62874370-62874389 | Msa0923070:intron | 30.0% |
| ATTAAAGCCATCAAATGGTT+AGG | - | chr6_2:62874412-62874431 | None:intergenic | 30.0% | |
| AGTACATTAAAGCCATCAAA+TGG | - | chr6_2:62874367-62874386 | None:intergenic | 30.0% | |
| !!! | GATGGCTTTAATGTACTTTT+TGG | + | chr6_2:62874370-62874389 | Msa0923070:intron | 30.0% |
| CATGACATCAAAAAATGGTT+AGG | - | chr6_2:62874462-62874481 | None:intergenic | 30.0% | |
| !!! | AGAAGCTAGTTGCTATTTTT+TGG | + | chr6_2:62874526-62874545 | Msa0923070:intron | 30.0% |
| !!! | TAGTTGCTATTTTTTGGTGT+AGG | + | chr6_2:62874532-62874551 | Msa0923070:intron | 30.0% |
| GGAATCTTGTTGAATACATT+AGG | + | chr6_2:62874553-62874572 | Msa0923070:intron | 30.0% | |
| ! | CTTTTGCTCTGTTTGATTAT+TGG | + | chr6_2:62874589-62874608 | Msa0923070:intron | 30.0% |
| ! | TAAATGCATGTTTGGAATCA+CGG | + | chr6_2:62874901-62874920 | Msa0923070:intron | 30.0% |
| GTTTGAATTAACGATGAGTT+AGG | - | chr6_2:62874963-62874982 | None:intergenic | 30.0% | |
| TAAGACATTCATCAATGACA+TGG | - | chr6_2:62875029-62875048 | None:intergenic | 30.0% | |
| ! | TTAAGAACACTCTTTAGCTT+TGG | - | chr6_2:62875128-62875147 | None:intergenic | 30.0% |
| TCTTAAACAAGCATCAATGA+AGG | + | chr6_2:62875142-62875161 | Msa0923070:CDS | 30.0% | |
| CTTAAACAAGCATCAATGAA+GGG | + | chr6_2:62875143-62875162 | Msa0923070:CDS | 30.0% | |
| ! | TTGAGAGTTTTCAAATTGGT+GGG | + | chr6_2:62875234-62875253 | Msa0923070:CDS | 30.0% |
| ! | GATCTAATAGCTTTTGTGTT+TGG | - | chr6_2:62875262-62875281 | None:intergenic | 30.0% |
| AGTCATGAAAAAAGCTTCAT+CGG | - | chr6_2:62875381-62875400 | None:intergenic | 30.0% | |
| TGGAGAAGAATTGAATTTCT+TGG | + | chr6_2:62875422-62875441 | Msa0923070:CDS | 30.0% | |
| GATTCATAGTTACTTGTGTA+AGG | + | chr6_2:62875558-62875577 | Msa0923070:intron | 30.0% | |
| TTCATAGTTACTTGTGTAAG+GGG | + | chr6_2:62875560-62875579 | Msa0923070:intron | 30.0% | |
| ACCCCTTATAATGAAAAACT+TGG | - | chr6_2:62875617-62875636 | None:intergenic | 30.0% | |
| TCATAACTTATGTAGGTGTT+TGG | + | chr6_2:62875884-62875903 | Msa0923070:intron | 30.0% | |
| !!! | AGTTGTTTTTACAGTTGAAG+AGG | - | chr6_2:62876457-62876476 | None:intergenic | 30.0% |
| TTGTAGAACCAAATTGTTCT+TGG | - | chr6_2:62876766-62876785 | None:intergenic | 30.0% | |
| ! | TTCTTAAGCACAAGCTATTT+TGG | + | chr6_2:62876892-62876911 | Msa0923070:CDS | 30.0% |
| ! | TGATCTTAAGATTTTGCTTG+AGG | + | chr6_2:62876999-62877018 | Msa0923070:CDS | 30.0% |
| ! | TTAAGATTTTGCTTGAGGAT+TGG | + | chr6_2:62877004-62877023 | Msa0923070:CDS | 30.0% |
| ! | GAAGTTTTTCTCTTATCTTC+AGG | - | chr6_2:62877048-62877067 | None:intergenic | 30.0% |
| TTTGTTTGGTACTCTTTGGA+AGG | - | chr6_2:62869443-62869462 | None:intergenic | 35.0% | |
| GTTGTTTGTTTGGTACTCTT+TGG | - | chr6_2:62869447-62869466 | None:intergenic | 35.0% | |
| ATACACATACACCTTAGTGT+TGG | + | chr6_2:62869526-62869545 | Msa0923070:five_prime_UTR | 35.0% | |
| ! | TGTTTTCTTCACCAACACTA+AGG | - | chr6_2:62869540-62869559 | None:intergenic | 35.0% |
| AACAAGTCATGGAAGTCAAT+TGG | + | chr6_2:62869715-62869734 | Msa0923070:CDS | 35.0% | |
| !! | AAGCCATGTTTTTGTGAAGA+GGG | + | chr6_2:62869744-62869763 | Msa0923070:CDS | 35.0% |
| TAACCCTCTTCACAAAAACA+TGG | - | chr6_2:62869750-62869769 | None:intergenic | 35.0% | |
| ! | AACAATTCTGCTTCTCCTTT+TGG | + | chr6_2:62869823-62869842 | Msa0923070:CDS | 35.0% |
| AAGTAATGTGAGATAGTAGC+AGG | - | chr6_2:62869853-62869872 | None:intergenic | 35.0% | |
| CTTTCTGTTCATGTTTGACT+TGG | - | chr6_2:62870151-62870170 | None:intergenic | 35.0% | |
| CATCATCACTATTTAGGAGA+AGG | - | chr6_2:62870366-62870385 | None:intergenic | 35.0% | |
| !!! | TCTTTTTCAGCAGACTCTTA+AGG | + | chr6_2:62870715-62870734 | Msa0923070:intron | 35.0% |
| !!! | CTTTTTCAGCAGACTCTTAA+GGG | + | chr6_2:62870716-62870735 | Msa0923070:intron | 35.0% |
| !! | TTTTTCAGCAGACTCTTAAG+GGG | + | chr6_2:62870717-62870736 | Msa0923070:intron | 35.0% |
| !! | TTTTGGATTTTGGCACCATT+CGG | + | chr6_2:62870769-62870788 | Msa0923070:intron | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr6_2:62871108-62871127 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr6_2:62871277-62871296 | Msa0923070:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr6_2:62871290-62871309 | Msa0923070:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr6_2:62871291-62871310 | Msa0923070:intron | 35.0% | |
| AAATAATATTACCTCCGTCC+CGG | - | chr6_2:62871312-62871331 | None:intergenic | 35.0% | |
| CACGCATAAAAGTCGTTTAA+TGG | - | chr6_2:62871359-62871378 | None:intergenic | 35.0% | |
| ! | AAAACCTTTTCACATTGCCA+TGG | + | chr6_2:62871637-62871656 | Msa0923070:intron | 35.0% |
| !! | TTTCTAGAATGTGGGGAAAT+GGG | - | chr6_2:62871752-62871771 | None:intergenic | 35.0% |
| !! | TTAGGAGGTTTCTAGAATGT+GGG | - | chr6_2:62871760-62871779 | None:intergenic | 35.0% |
| !! | TTTAGGAGGTTTCTAGAATG+TGG | - | chr6_2:62871761-62871780 | None:intergenic | 35.0% |
| ! | GGATATGTTCACATTTTAGG+AGG | - | chr6_2:62871775-62871794 | None:intergenic | 35.0% |
| AACATATCCACAAGGAGAAT+AGG | + | chr6_2:62871786-62871805 | Msa0923070:intron | 35.0% | |
| AGAATAGGAGATACATGAAG+AGG | + | chr6_2:62871801-62871820 | Msa0923070:intron | 35.0% | |
| GAATAGGAGATACATGAAGA+GGG | + | chr6_2:62871802-62871821 | Msa0923070:intron | 35.0% | |
| TGAACTGTGTATCAAAAAGC+AGG | + | chr6_2:62871991-62872010 | Msa0923070:intron | 35.0% | |
| GAACTGTGTATCAAAAAGCA+GGG | + | chr6_2:62871992-62872011 | Msa0923070:intron | 35.0% | |
| GTTCTTGCTTATGCATTAAG+AGG | - | chr6_2:62872072-62872091 | None:intergenic | 35.0% | |
| !! | TTCAGTCTTGAGTTGAGTTT+GGG | - | chr6_2:62872094-62872113 | None:intergenic | 35.0% |
| !! | TTTCAGTCTTGAGTTGAGTT+TGG | - | chr6_2:62872095-62872114 | None:intergenic | 35.0% |
| GAATTCATATTATTAGGCCC+CGG | - | chr6_2:62872168-62872187 | None:intergenic | 35.0% | |
| AAGACAGATAAATTGCTCAC+AGG | - | chr6_2:62872324-62872343 | None:intergenic | 35.0% | |
| AGCATCATTGATATGCTTCT+CGG | + | chr6_2:62872392-62872411 | Msa0923070:intron | 35.0% | |
| CAGAGCTTAACAAGTGAAAA+TGG | - | chr6_2:62872974-62872993 | None:intergenic | 35.0% | |
| GTCAACCTTTAGTCTACATT+GGG | - | chr6_2:62873547-62873566 | None:intergenic | 35.0% | |
| AGTCAACCTTTAGTCTACAT+TGG | - | chr6_2:62873548-62873567 | None:intergenic | 35.0% | |
| AATGTAGACTAAAGGTTGAC+TGG | + | chr6_2:62873547-62873566 | Msa0923070:intron | 35.0% | |
| ! | AGGGATATATTTTCCTTGGT+AGG | + | chr6_2:62874066-62874085 | Msa0923070:intron | 35.0% |
| GTATATAAGTAAATGGAGGG+GGG | + | chr6_2:62874266-62874285 | Msa0923070:intron | 35.0% | |
| CCATCAAATGGTTAGGATTT+AGG | - | chr6_2:62874405-62874424 | None:intergenic | 35.0% | |
| CCTAAATCCTAACCATTTGA+TGG | + | chr6_2:62874402-62874421 | Msa0923070:intron | 35.0% | |
| TCCAAAATCAATACACACCA+AGG | - | chr6_2:62874699-62874718 | None:intergenic | 35.0% | |
| CCAAACATGCATTTAAGTCA+TGG | - | chr6_2:62874896-62874915 | None:intergenic | 35.0% | |
| CCATGACTTAAATGCATGTT+TGG | + | chr6_2:62874893-62874912 | Msa0923070:intron | 35.0% | |
| ! | CTTGAGAGTTTTCAAATTGG+TGG | + | chr6_2:62875233-62875252 | Msa0923070:CDS | 35.0% |
| AAAGCTATTAGATCACCTTG+TGG | + | chr6_2:62875268-62875287 | Msa0923070:CDS | 35.0% | |
| ATCACCTTGTGGTAATAACA+TGG | + | chr6_2:62875279-62875298 | Msa0923070:CDS | 35.0% | |
| TCACCTTGTGGTAATAACAT+GGG | + | chr6_2:62875280-62875299 | Msa0923070:CDS | 35.0% | |
| CACATCATATGTAAGTAGGT+TGG | - | chr6_2:62875404-62875423 | None:intergenic | 35.0% | |
| CAACCTACTTACATATGATG+TGG | + | chr6_2:62875402-62875421 | Msa0923070:CDS | 35.0% | |
| TCTCCACATCATATGTAAGT+AGG | - | chr6_2:62875408-62875427 | None:intergenic | 35.0% | |
| CAGACACTCATCTTCATATT+AGG | - | chr6_2:62875778-62875797 | None:intergenic | 35.0% | |
| TCGTGCTTCATAACTTATGT+AGG | + | chr6_2:62875877-62875896 | Msa0923070:intron | 35.0% | |
| GCTGATTATCTACCCATAAA+AGG | - | chr6_2:62875968-62875987 | None:intergenic | 35.0% | |
| ! | TTTTGCCATATAAGCTCAAC+AGG | + | chr6_2:62876043-62876062 | Msa0923070:intron | 35.0% |
| !! | AGCTCTTTTAAGGATGCATT+TGG | - | chr6_2:62876324-62876343 | None:intergenic | 35.0% |
| GTCAAGATCCTCTAAACAAT+TGG | - | chr6_2:62876512-62876531 | None:intergenic | 35.0% | |
| !!! | TATGTTGTTTTACCCTTTGC+AGG | + | chr6_2:62876597-62876616 | Msa0923070:intron | 35.0% |
| ACATATGTGAATCCTCCATT+TGG | - | chr6_2:62876733-62876752 | None:intergenic | 35.0% | |
| ACATCTTGATCATGCATAGT+TGG | - | chr6_2:62876817-62876836 | None:intergenic | 35.0% | |
| !! | TTAAGCACAAGCTATTTTGG+AGG | + | chr6_2:62876895-62876914 | Msa0923070:CDS | 35.0% |
| !! | TAAGCACAAGCTATTTTGGA+GGG | + | chr6_2:62876896-62876915 | Msa0923070:CDS | 35.0% |
| ! | TGTCAATCTAGCAAGGATTT+TGG | + | chr6_2:62876922-62876941 | Msa0923070:CDS | 35.0% |
| ATGCATGCTAATTGTTGTGT+TGG | + | chr6_2:62876958-62876977 | Msa0923070:CDS | 35.0% | |
| ! | TGAGGATTGGAAGAAGTATA+TGG | + | chr6_2:62877017-62877036 | Msa0923070:CDS | 35.0% |
| AAGAATCATTATGCTGCTGC+CGG | + | chr6_2:62869664-62869683 | Msa0923070:CDS | 40.0% | |
| TCATGGAAGTCAATTGGAAC+AGG | + | chr6_2:62869721-62869740 | Msa0923070:CDS | 40.0% | |
| !! | GAAGCCATGTTTTTGTGAAG+AGG | + | chr6_2:62869743-62869762 | Msa0923070:CDS | 40.0% |
| !!! | TTGTTGCTTTTGCTGTGTTG+TGG | + | chr6_2:62869788-62869807 | Msa0923070:CDS | 40.0% |
| ATAGTAGCAGGAAGACCAAA+AGG | - | chr6_2:62869841-62869860 | None:intergenic | 40.0% | |
| !! | TGATGTCTGCTTTGTTGTTG+TGG | + | chr6_2:62870110-62870129 | Msa0923070:intron | 40.0% |
| !! | GATGTCTGCTTTGTTGTTGT+GGG | + | chr6_2:62870111-62870130 | Msa0923070:intron | 40.0% |
| GGCAGAAAACCTGACAAAAT+CGG | - | chr6_2:62870284-62870303 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr6_2:62871107-62871126 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr6_2:62871293-62871312 | None:intergenic | 40.0% | |
| AGAACCATGGCAATGTGAAA+AGG | - | chr6_2:62871644-62871663 | None:intergenic | 40.0% | |
| ACTCAACACGTTGGAAACAA+CGG | - | chr6_2:62871680-62871699 | None:intergenic | 40.0% | |
| !! | TTCTAGAATGTGGGGAAATG+GGG | - | chr6_2:62871751-62871770 | None:intergenic | 40.0% |
| !! | GTTTCTAGAATGTGGGGAAA+TGG | - | chr6_2:62871753-62871772 | None:intergenic | 40.0% |
| !! | TAGGAGGTTTCTAGAATGTG+GGG | - | chr6_2:62871759-62871778 | None:intergenic | 40.0% |
| TGTATCTCCTATTCTCCTTG+TGG | - | chr6_2:62871796-62871815 | None:intergenic | 40.0% | |
| CGAAATAACGAGTCTCAAAG+AGG | + | chr6_2:62871830-62871849 | Msa0923070:intron | 40.0% | |
| AGCAGATGGTTAGGTTAAGT+AGG | - | chr6_2:62871864-62871883 | None:intergenic | 40.0% | |
| ! | AATCAACAGAAGCACGTGTT+CGG | - | chr6_2:62872421-62872440 | None:intergenic | 40.0% |
| AGCACGTAACAGTAACAATG+AGG | - | chr6_2:62872746-62872765 | None:intergenic | 40.0% | |
| AGCTGGTTATGTCTGATCAA+TGG | - | chr6_2:62873510-62873529 | None:intergenic | 40.0% | |
| GTTGTCCCAATGTAGACTAA+AGG | + | chr6_2:62873539-62873558 | Msa0923070:intron | 40.0% | |
| GAGGTTGCCATCTTCAATAA+TGG | + | chr6_2:62874101-62874120 | Msa0923070:intron | 40.0% | |
| ! | GCTCATAGGTGAGATTTTGA+AGG | + | chr6_2:62874173-62874192 | Msa0923070:intron | 40.0% |
| ! | GTTTTCTTCTACCATTGCCT+TGG | + | chr6_2:62874679-62874698 | Msa0923070:intron | 40.0% |
| ATCAATACACACCAAGGCAA+TGG | - | chr6_2:62874693-62874712 | None:intergenic | 40.0% | |
| !!! | GCCTTGGTGTGTATTGATTT+TGG | + | chr6_2:62874695-62874714 | Msa0923070:intron | 40.0% |
| CGGTAAGTTTGACAAACTCA+CGG | + | chr6_2:62874921-62874940 | Msa0923070:intron | 40.0% | |
| !!! | TGTGTGTTTGGTTCTCCTTT+TGG | - | chr6_2:62875002-62875021 | None:intergenic | 40.0% |
| ! | TGACATGGAAAGTGTGTGTT+TGG | - | chr6_2:62875014-62875033 | None:intergenic | 40.0% |
| TCACCACATTGAATGATGCA+TGG | + | chr6_2:62875180-62875199 | Msa0923070:CDS | 40.0% | |
| CACCACATTGAATGATGCAT+GGG | + | chr6_2:62875181-62875200 | Msa0923070:CDS | 40.0% | |
| !! | TGCAACGAGAGTATGCTTTT+TGG | - | chr6_2:62875307-62875326 | None:intergenic | 40.0% |
| !! | TCTTGGTGCTGTTCTTCATT+TGG | + | chr6_2:62875439-62875458 | Msa0923070:CDS | 40.0% |
| !! | CTTGGTGCTGTTCTTCATTT+GGG | + | chr6_2:62875440-62875459 | Msa0923070:CDS | 40.0% |
| !! | GGGATATAGCTTTGTGTTCA+CGG | + | chr6_2:62875460-62875479 | Msa0923070:CDS | 40.0% |
| !!! | TATCTTTTGAAGCACGGACA+CGG | + | chr6_2:62875657-62875676 | Msa0923070:intron | 40.0% |
| ATAGTTGAGCGAGAAAGTCT+TGG | - | chr6_2:62876104-62876123 | None:intergenic | 40.0% | |
| GGGTTAGACCAATTGTTTAG+AGG | + | chr6_2:62876501-62876520 | Msa0923070:intron | 40.0% | |
| TTATATCCGTGTCCTGCAAA+GGG | - | chr6_2:62876612-62876631 | None:intergenic | 40.0% | |
| ATTATATCCGTGTCCTGCAA+AGG | - | chr6_2:62876613-62876632 | None:intergenic | 40.0% | |
| TGGATAGTTGTGCATGTCAA+AGG | - | chr6_2:62876713-62876732 | None:intergenic | 40.0% | |
| GACATGCACAACTATCCAAA+TGG | + | chr6_2:62876715-62876734 | Msa0923070:CDS | 40.0% | |
| ATGCACAACTATCCAAATGG+AGG | + | chr6_2:62876718-62876737 | Msa0923070:CDS | 40.0% | |
| !! | AGGGTTTTGTCAATCTAGCA+AGG | + | chr6_2:62876915-62876934 | Msa0923070:CDS | 40.0% |
| !! | TGCTAATTGTTGTGTTGGCT+TGG | + | chr6_2:62876963-62876982 | Msa0923070:CDS | 40.0% |
| GAAAAACTTCACACCCTTCT+TGG | + | chr6_2:62877058-62877077 | Msa0923070:CDS | 40.0% | |
| !! | TTTTTGGCACACTCCAAGAA+GGG | - | chr6_2:62877074-62877093 | None:intergenic | 40.0% |
| AAATAGGTACTAGTGGCGTG+TGG | + | chr6_2:62870633-62870652 | Msa0923070:intron | 45.0% | |
| AATAGGTACTAGTGGCGTGT+GGG | + | chr6_2:62870634-62870653 | Msa0923070:intron | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | + | chr6_2:62871295-62871314 | Msa0923070:intron | 45.0% | |
| ! | AGTTGAAGCACTCAACACGT+TGG | - | chr6_2:62871689-62871708 | None:intergenic | 45.0% |
| GACACAGCTAAAGACAACAC+TGG | + | chr6_2:62872142-62872161 | Msa0923070:intron | 45.0% | |
| ! | ATCAACAGAAGCACGTGTTC+GGG | - | chr6_2:62872420-62872439 | None:intergenic | 45.0% |
| TCTACATTGGGACAACCATG+TGG | - | chr6_2:62873535-62873554 | None:intergenic | 45.0% | |
| GTGGCTCCTAAAGCTATTTG+AGG | - | chr6_2:62874242-62874261 | None:intergenic | 45.0% | |
| CGATGAGTTAGGCAGAATCA+AGG | - | chr6_2:62874952-62874971 | None:intergenic | 45.0% | |
| TACAACTCGACACCTCCAAA+AGG | + | chr6_2:62874984-62875003 | Msa0923070:intron | 45.0% | |
| !!! | GTGTTTGGTTCTCCTTTTGG+AGG | - | chr6_2:62874999-62875018 | None:intergenic | 45.0% |
| AGCCCATGCATCATTCAATG+TGG | - | chr6_2:62875186-62875205 | None:intergenic | 45.0% | |
| GGTCCCATGTTATTACCACA+AGG | - | chr6_2:62875286-62875305 | None:intergenic | 45.0% | |
| ACCAACACATGTCCAACAGT+GGG | + | chr6_2:62875747-62875766 | Msa0923070:intron | 45.0% | |
| ACCAACACATATCCGACACT+GGG | + | chr6_2:62875832-62875851 | Msa0923070:intron | 45.0% | |
| TATTAGGTGTGTCCCAGTGT+CGG | - | chr6_2:62875847-62875866 | None:intergenic | 45.0% | |
| ACTGGGACACACCTAATACT+AGG | + | chr6_2:62875849-62875868 | Msa0923070:intron | 45.0% | |
| GCACGAACACTCCTAGTATT+AGG | - | chr6_2:62875863-62875882 | None:intergenic | 45.0% | |
| ! | GTTTTACCCTTTGCAGGACA+CGG | + | chr6_2:62876603-62876622 | Msa0923070:intron | 45.0% |
| TGCAGGACACGGATATAATG+TGG | + | chr6_2:62876614-62876633 | Msa0923070:intron | 45.0% | |
| !! | TTGTGTTGGCTTGGAGAACA+AGG | + | chr6_2:62876972-62876991 | Msa0923070:CDS | 45.0% |
| !! | CTTTTTGGCACACTCCAAGA+AGG | - | chr6_2:62877075-62877094 | None:intergenic | 45.0% |
| !!! | TTAAATTTGTTTTTTAATTA+AGG | - | chr6_2:62871598-62871617 | None:intergenic | 5.0% |
| !! | ATATATCAAAAATATAAAAA+AGG | - | chr6_2:62874025-62874044 | None:intergenic | 5.0% |
| !! | CCATGACTTGTTCCCTTCTC+CGG | - | chr6_2:62869707-62869726 | None:intergenic | 50.0% |
| ATAGGTACTAGTGGCGTGTG+GGG | + | chr6_2:62870635-62870654 | Msa0923070:intron | 50.0% | |
| GCACCATTCGGAATTGTGTG+AGG | + | chr6_2:62870781-62870800 | Msa0923070:intron | 50.0% | |
| CCTCCTCACACAATTCCGAA+TGG | - | chr6_2:62870787-62870806 | None:intergenic | 50.0% | |
| CCATTCGGAATTGTGTGAGG+AGG | + | chr6_2:62870784-62870803 | Msa0923070:intron | 50.0% | |
| GGAATTGTGTGAGGAGGAAG+AGG | + | chr6_2:62870790-62870809 | Msa0923070:intron | 50.0% | |
| TTAGAATACTCCCTCCGTCC+CGG | + | chr6_2:62871086-62871105 | Msa0923070:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr6_2:62871103-62871122 | None:intergenic | 50.0% | |
| CAGCTAAAGACAACACTGGC+CGG | + | chr6_2:62872146-62872165 | Msa0923070:intron | 50.0% | |
| AGCTAAAGACAACACTGGCC+GGG | + | chr6_2:62872147-62872166 | Msa0923070:intron | 50.0% | |
| GACATAACCAGCTGTCCACA+TGG | + | chr6_2:62873517-62873536 | Msa0923070:intron | 50.0% | |
| ! | AATGATGCATGGGCTGAACC+AGG | + | chr6_2:62875191-62875210 | Msa0923070:CDS | 50.0% |
| CACCAACACATGTCCAACAG+TGG | + | chr6_2:62875746-62875765 | Msa0923070:intron | 50.0% | |
| TCCCACTGTTGGACATGTGT+TGG | - | chr6_2:62875751-62875770 | None:intergenic | 50.0% | |
| TATTAGGCGTGTCCCACTGT+TGG | - | chr6_2:62875762-62875781 | None:intergenic | 50.0% | |
| CACCAACACATATCCGACAC+TGG | + | chr6_2:62875831-62875850 | Msa0923070:intron | 50.0% | |
| ! | TCCCAGTGTCGGATATGTGT+TGG | - | chr6_2:62875836-62875855 | None:intergenic | 50.0% |
| TGGGGCCTGTTGAGCTTATA+TGG | - | chr6_2:62876051-62876070 | None:intergenic | 50.0% | |
| GGAGTGTGCCAAAAAGTTGC+AGG | + | chr6_2:62877079-62877098 | Msa0923070:CDS | 50.0% | |
| TTCTCCGGCAACGTTGTCGA+CGG | - | chr6_2:62869692-62869711 | None:intergenic | 55.0% | |
| TCGACAACGTTGCCGGAGAA+GGG | + | chr6_2:62869692-62869711 | Msa0923070:CDS | 55.0% | |
| CCGGAGAAGGGAACAAGTCA+TGG | + | chr6_2:62869704-62869723 | Msa0923070:CDS | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr6_2:62871099-62871118 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr6_2:62871298-62871317 | Msa0923070:intron | 55.0% | |
| GCTAAAGACAACACTGGCCG+GGG | + | chr6_2:62872148-62872167 | Msa0923070:intron | 55.0% | |
| GTCGACAACGTTGCCGGAGA+AGG | + | chr6_2:62869691-62869710 | Msa0923070:CDS | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr6_2:62871100-62871119 | None:intergenic | 60.0% | |
| GGGACAACCATGTGGACAGC+TGG | - | chr6_2:62873527-62873546 | None:intergenic | 60.0% | |
| GGCAACGTTGTCGACGGCAC+CGG | - | chr6_2:62869686-62869705 | None:intergenic | 65.0% | |
| ! | GGTGCCGTCGACAACGTTGC+CGG | + | chr6_2:62869685-62869704 | Msa0923070:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 62869307 | 62877104 | 62869307 | ID=Msa0923070;Name=Msa0923070 |
| chr6_2 | mRNA | 62869307 | 62877104 | 62869307 | ID=Msa0923070-mRNA-1;Parent=Msa0923070;Name=Msa0923070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=354|1|0.33|1|1|1|3|0|361 |
| chr6_2 | exon | 62869307 | 62869891 | 62869307 | ID=Msa0923070-mRNA-1:exon:9763;Parent=Msa0923070-mRNA-1 |
| chr6_2 | exon | 62875113 | 62875481 | 62875113 | ID=Msa0923070-mRNA-1:exon:9764;Parent=Msa0923070-mRNA-1 |
| chr6_2 | exon | 62876619 | 62877104 | 62876619 | ID=Msa0923070-mRNA-1:exon:9765;Parent=Msa0923070-mRNA-1 |
| chr6_2 | five_prime_UTR | 62869307 | 62869660 | 62869307 | ID=Msa0923070-mRNA-1:five_prime_utr;Parent=Msa0923070-mRNA-1 |
| chr6_2 | CDS | 62869661 | 62869891 | 62869661 | ID=Msa0923070-mRNA-1:cds;Parent=Msa0923070-mRNA-1 |
| chr6_2 | CDS | 62875113 | 62875481 | 62875113 | ID=Msa0923070-mRNA-1:cds;Parent=Msa0923070-mRNA-1 |
| chr6_2 | CDS | 62876619 | 62877104 | 62876619 | ID=Msa0923070-mRNA-1:cds;Parent=Msa0923070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
