Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996380 | XP_003620328.1 | 97.238 | 362 | 9 | 1 | 1 | 361 | 1 | 362 | 0.0 | 739 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996380 | sp|P0C042|Y4597_ARATH | 50.538 | 279 | 127 | 4 | 83 | 360 | 41 | 309 | 5.19e-92 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996380 | G7KM25 | 97.238 | 362 | 9 | 1 | 1 | 361 | 1 | 362 | 0.0 | 739 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090380 | Msa0996380 | 0.804678 | 1.925411e-49 | -8.615850e-47 |
| Msa0641130 | Msa0996380 | 0.810866 | 9.313219e-51 | -8.615850e-47 |
| Msa0832950 | Msa0996380 | 0.802749 | 4.840660e-49 | -8.615850e-47 |
| Msa0137860 | Msa0996380 | 0.804392 | 2.208479e-49 | -8.615850e-47 |
| Msa0193190 | Msa0996380 | 0.811006 | 8.687661e-51 | -8.615850e-47 |
| Msa0365950 | Msa0996380 | 0.801040 | 1.086366e-48 | -8.615850e-47 |
| Msa0413870 | Msa0996380 | 0.800129 | 1.665635e-48 | -8.615850e-47 |
| Msa0996380 | Msa1069890 | 0.811535 | 6.670432e-51 | -8.615850e-47 |
| Msa0996380 | Msa1119920 | 0.803469 | 3.434400e-49 | -8.615850e-47 |
| Msa0996380 | Msa1128790 | 0.825914 | 3.613671e-54 | -8.615850e-47 |
| Msa0996380 | Msa1157670 | 0.816726 | 4.765291e-52 | -8.615850e-47 |
| Msa0996380 | Msa1180720 | 0.802717 | 4.914941e-49 | -8.615850e-47 |
| Msa0996380 | Msa1225580 | 0.835900 | 1.282162e-56 | -8.615850e-47 |
| Msa0996380 | Msa1231710 | 0.800687 | 1.282419e-48 | -8.615850e-47 |
| Msa0996380 | Msa1256060 | 0.816246 | 6.104114e-52 | -8.615850e-47 |
| Msa0996380 | Msa1296240 | 0.811551 | 6.615132e-51 | -8.615850e-47 |
| Msa0996380 | Msa1312440 | 0.813041 | 3.128928e-51 | -8.615850e-47 |
| Msa0996380 | Msa1355510 | 0.817757 | 2.794985e-52 | -8.615850e-47 |
| Msa0996380 | Msa1433410 | 0.803664 | 3.129371e-49 | -8.615850e-47 |
| Msa0996380 | Msa1435320 | 0.812149 | 4.903267e-51 | -8.615850e-47 |
| Msa0996380 | Msa1443400 | 0.812413 | 4.292166e-51 | -8.615850e-47 |
| Msa0996380 | Msa1443640 | 0.819656 | 1.035750e-52 | -8.615850e-47 |
| Msa0996380 | Msa1448040 | 0.813245 | 2.822186e-51 | -8.615850e-47 |
| Msa0264680 | Msa0996380 | 0.818020 | 2.437515e-52 | -8.615850e-47 |
| Msa0276430 | Msa0996380 | 0.806326 | 8.684683e-50 | -8.615850e-47 |
| Msa0302730 | Msa0996380 | 0.828553 | 8.432359e-55 | -8.615850e-47 |
| Msa0306310 | Msa0996380 | 0.815208 | 1.039959e-51 | -8.615850e-47 |
| Msa0316470 | Msa0996380 | 0.805403 | 1.357682e-49 | -8.615850e-47 |
| Msa0319240 | Msa0996380 | 0.821055 | 4.947096e-53 | -8.615850e-47 |
| Msa0355550 | Msa0996380 | 0.804922 | 1.712200e-49 | -8.615850e-47 |
| Msa0484800 | Msa0996380 | 0.811268 | 7.620087e-51 | -8.615850e-47 |
| Msa0545050 | Msa0996380 | 0.818347 | 2.055907e-52 | -8.615850e-47 |
| Msa0600590 | Msa0996380 | 0.820190 | 7.817336e-53 | -8.615850e-47 |
| Msa0896530 | Msa0996380 | 0.860702 | 1.718532e-63 | -8.615850e-47 |
| Msa0923070 | Msa0996380 | 0.847989 | 8.152945e-60 | -8.615850e-47 |
| Msa0945130 | Msa0996380 | 0.801716 | 7.898205e-49 | -8.615850e-47 |
| Msa0961670 | Msa0996380 | 0.805650 | 1.205094e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996380 | MtrunA17_Chr6g0481291 | 97.238 | 362 | 9 | 1 | 1 | 361 | 1 | 362 | 0.0 | 739 |
| Msa0996380 | MtrunA17_Chr1g0162921 | 51.506 | 332 | 152 | 3 | 36 | 360 | 47 | 376 | 2.43e-125 | 365 |
| Msa0996380 | MtrunA17_Chr1g0210841 | 56.597 | 288 | 121 | 2 | 73 | 360 | 64 | 347 | 2.10e-123 | 360 |
| Msa0996380 | MtrunA17_Chr1g0168191 | 41.751 | 297 | 158 | 6 | 78 | 361 | 58 | 352 | 1.92e-69 | 221 |
| Msa0996380 | MtrunA17_Chr8g0335991 | 38.279 | 337 | 178 | 8 | 48 | 357 | 20 | 353 | 2.35e-67 | 216 |
| Msa0996380 | MtrunA17_Chr7g0225581 | 33.088 | 272 | 176 | 5 | 93 | 360 | 1 | 270 | 9.93e-48 | 162 |
| Msa0996380 | MtrunA17_Chr7g0225571 | 32.117 | 274 | 175 | 7 | 93 | 360 | 1 | 269 | 2.01e-43 | 151 |
| Msa0996380 | MtrunA17_Chr8g0336021 | 41.429 | 140 | 80 | 1 | 205 | 342 | 1 | 140 | 4.02e-32 | 118 |
| Msa0996380 | MtrunA17_Chr8g0336001 | 38.272 | 162 | 98 | 1 | 201 | 360 | 3 | 164 | 2.57e-31 | 116 |
| Msa0996380 | MtrunA17_Chr8g0336011 | 38.554 | 166 | 86 | 5 | 50 | 200 | 22 | 186 | 1.35e-25 | 102 |
| Msa0996380 | MtrunA17_Chr8g0336031 | 39.844 | 128 | 69 | 3 | 80 | 200 | 57 | 183 | 3.33e-23 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996380 | AT1G14590.1 | 48.451 | 355 | 170 | 5 | 7 | 360 | 18 | 360 | 5.29e-123 | 360 |
| Msa0996380 | AT2G02061.2 | 57.246 | 276 | 116 | 2 | 87 | 361 | 111 | 385 | 9.04e-119 | 349 |
| Msa0996380 | AT2G02061.1 | 57.091 | 275 | 116 | 2 | 87 | 360 | 111 | 384 | 6.12e-118 | 348 |
| Msa0996380 | AT4G19975.1 | 49.555 | 337 | 152 | 4 | 33 | 360 | 26 | 353 | 1.28e-116 | 342 |
| Msa0996380 | AT5G44820.1 | 54.704 | 287 | 124 | 3 | 76 | 360 | 82 | 364 | 9.34e-114 | 335 |
| Msa0996380 | AT4G19970.1 | 43.363 | 339 | 176 | 6 | 34 | 360 | 41 | 375 | 5.88e-99 | 298 |
| Msa0996380 | AT4G15970.1 | 50.896 | 279 | 126 | 4 | 83 | 360 | 32 | 300 | 1.47e-93 | 284 |
| Msa0996380 | AT1G28700.1 | 37.748 | 302 | 170 | 6 | 67 | 361 | 36 | 326 | 7.46e-61 | 199 |
| Msa0996380 | AT1G28695.1 | 39.068 | 279 | 159 | 5 | 69 | 341 | 30 | 303 | 1.85e-59 | 195 |
| Msa0996380 | AT1G28710.1 | 37.329 | 292 | 170 | 6 | 59 | 341 | 27 | 314 | 2.95e-58 | 192 |
| Msa0996380 | AT1G28710.4 | 37.329 | 292 | 170 | 6 | 59 | 341 | 27 | 314 | 2.95e-58 | 192 |
| Msa0996380 | AT1G28710.3 | 37.329 | 292 | 170 | 6 | 59 | 341 | 27 | 314 | 2.95e-58 | 192 |
| Msa0996380 | AT5G40900.1 | 34.615 | 286 | 159 | 7 | 84 | 361 | 57 | 322 | 1.63e-46 | 161 |
Find 64 sgRNAs with CRISPR-Local
Find 339 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTGGTTCTACAAATTT+TGG | 0.142477 | 6_4:+74543981 | Msa0996380:CDS |
| AAGCTTCTTATTTGTAATTA+AGG | 0.172101 | 6_4:-74544071 | None:intergenic |
| TTCTTAAGCACAAGCTATTT+TGG | 0.185065 | 6_4:+74544103 | Msa0996380:CDS |
| AACAATTCTGCTTCTCCTTT+TGG | 0.199551 | 6_4:+74537581 | Msa0996380:CDS |
| TCTTGGTGCTGTTCTTCATT+TGG | 0.209687 | 6_4:+74542957 | Msa0996380:CDS |
| TGTCAATCTAGCAAGGATTT+TGG | 0.246249 | 6_4:+74544133 | Msa0996380:CDS |
| CTTGGTGCTGTTCTTCATTT+GGG | 0.259335 | 6_4:+74542958 | Msa0996380:CDS |
| TTGTAGAACCAAATTGTTCT+TGG | 0.269685 | 6_4:-74543974 | None:intergenic |
| AAAACAAAGGGAATTGGAAT+TGG | 0.303312 | 6_4:-74537140 | None:intergenic |
| AATCAAATCCAAGAACAATT+TGG | 0.309827 | 6_4:+74543966 | Msa0996380:CDS |
| AGCTTCTTATTTGTAATTAA+GGG | 0.327364 | 6_4:-74544070 | None:intergenic |
| ATTGCTTGTGATTATTTCAA+TGG | 0.335617 | 6_4:+74543893 | Msa0996380:CDS |
| GTTGTTTGTTTGGTACTCTT+TGG | 0.338268 | 6_4:-74537204 | None:intergenic |
| AAAGTTTGAGGTTGTTTGTT+TGG | 0.339870 | 6_4:-74537214 | None:intergenic |
| TGGAGAAGAATTGAATTTCT+TGG | 0.355189 | 6_4:+74542940 | Msa0996380:CDS |
| CAAATAAGAAGCTTAAGATT+AGG | 0.357408 | 6_4:+74544080 | Msa0996380:CDS |
| TTAAGAACACTCTTTAGCTT+TGG | 0.370284 | 6_4:-74542643 | None:intergenic |
| CCATGACTTGTTCCCTTCTC+CGG | 0.386963 | 6_4:-74537462 | None:intergenic |
| GATCCAATAGCATTTGTGTT+TGG | 0.405430 | 6_4:-74542777 | None:intergenic |
| TGCTAATTGTTGTGTTGGCT+TGG | 0.407831 | 6_4:+74544174 | Msa0996380:CDS |
| ACATATGTGAATCCTCCATT+TGG | 0.413713 | 6_4:-74543941 | None:intergenic |
| GAACCAAACACAAATGCTAT+TGG | 0.415826 | 6_4:+74542774 | Msa0996380:CDS |
| AAACAAAGGGAATTGGAATT+GGG | 0.421877 | 6_4:-74537139 | None:intergenic |
| AACAAGTCATGGAAGTCAAT+TGG | 0.426656 | 6_4:+74537473 | Msa0996380:CDS |
| TGAGGATTGGAAGAAGTATA+TGG | 0.432395 | 6_4:+74544228 | Msa0996380:CDS |
| CCTCAAACTTTGTTTATACT+AGG | 0.433343 | 6_4:+74537226 | Msa0996380:five_prime_UTR |
| AAAGTTTGTATAAAGAGAAA+CGG | 0.438035 | 6_4:-74537116 | None:intergenic |
| AAGTTTGTATAAAGAGAAAC+GGG | 0.439700 | 6_4:-74537115 | None:intergenic |
| TCTTTGTAAAATTGTTTGAA+TGG | 0.440475 | 6_4:-74543857 | None:intergenic |
| TCATGGAAGTCAATTGGAAC+AGG | 0.450424 | 6_4:+74537479 | Msa0996380:CDS |
| AAGTAATGTGAGATAGTAGC+AGG | 0.464851 | 6_4:-74537608 | None:intergenic |
| TGTTACCAACTTCAAACTAA+AGG | 0.466478 | 6_4:+74542862 | Msa0996380:CDS |
| ACATCTTGATCATGCATAGT+TGG | 0.467730 | 6_4:-74544025 | None:intergenic |
| TGTCACCTTTAGTTTGAAGT+TGG | 0.471511 | 6_4:-74542867 | None:intergenic |
| ATAGTAGCAGGAAGACCAAA+AGG | 0.473505 | 6_4:-74537596 | None:intergenic |
| ACTATCTCACATTACTTCAA+TGG | 0.475598 | 6_4:+74537614 | Msa0996380:CDS |
| GTCGACAACGTTGCCGGAGA+AGG | 0.482918 | 6_4:+74537449 | Msa0996380:CDS |
| CACATCATGTGTAAATATGT+TGG | 0.494038 | 6_4:-74542919 | None:intergenic |
| CCTAGTATAAACAAAGTTTG+AGG | 0.499988 | 6_4:-74537226 | None:intergenic |
| GGTGCCGTCGACAACGTTGC+CGG | 0.503886 | 6_4:+74537443 | Msa0996380:CDS |
| TTTGTTTGGTACTCTTTGGA+AGG | 0.509625 | 6_4:-74537200 | None:intergenic |
| GGCAACGTTGTCGACGGCAC+CGG | 0.511091 | 6_4:-74537441 | None:intergenic |
| TTCTATCACAACCTTAATTG+TGG | 0.514300 | 6_4:-74537397 | None:intergenic |
| TGGATAGTTGTGCATGTCAA+AGG | 0.516348 | 6_4:-74543921 | None:intergenic |
| CCGGAGAAGGGAACAAGTCA+TGG | 0.519589 | 6_4:+74537462 | Msa0996380:CDS |
| ATGCATGCTAATTGTTGTGT+TGG | 0.526017 | 6_4:+74544169 | Msa0996380:CDS |
| GACATGCACAACTATCCAAA+TGG | 0.526709 | 6_4:+74543926 | Msa0996380:CDS |
| TCTTAAACAAGCATCAATGA+AGG | 0.526752 | 6_4:+74542660 | Msa0996380:CDS |
| AATTGATCAAATATTGAACC+TGG | 0.540784 | 6_4:-74542727 | None:intergenic |
| TCGACAACGTTGCCGGAGAA+GGG | 0.550988 | 6_4:+74537450 | Msa0996380:CDS |
| TTCTCCGGCAACGTTGTCGA+CGG | 0.559557 | 6_4:-74537447 | None:intergenic |
| TCACAACATTGAATGATGCA+TGG | 0.566676 | 6_4:+74542698 | Msa0996380:CDS |
| ATCATCTTGTGGTAATAACA+TGG | 0.577012 | 6_4:+74542797 | Msa0996380:CDS |
| CAACATATTTACACATGATG+TGG | 0.580286 | 6_4:+74542920 | Msa0996380:CDS |
| CACAACATTGAATGATGCAT+GGG | 0.590967 | 6_4:+74542699 | Msa0996380:CDS |
| CTTAAACAAGCATCAATGAA+GGG | 0.599814 | 6_4:+74542661 | Msa0996380:CDS |
| AATGATGCATGGGCTGAACC+AGG | 0.607742 | 6_4:+74542709 | Msa0996380:CDS |
| AATGCTATTGGATCATCTTG+TGG | 0.609437 | 6_4:+74542786 | Msa0996380:CDS |
| AAGAATCATTATGCTGCTGC+CGG | 0.609890 | 6_4:+74537422 | Msa0996380:CDS |
| TTGTGTTGGCTTGGAGAACA+AGG | 0.616497 | 6_4:+74544183 | Msa0996380:CDS |
| TGCAGGACACTGATATAATG+TGG | 0.629906 | 6_4:+74543825 | Msa0996380:intron |
| TCATCTTGTGGTAATAACAT+GGG | 0.641239 | 6_4:+74542798 | Msa0996380:CDS |
| AGATACATACACCTTAGTGT+TGG | 0.644220 | 6_4:+74537284 | Msa0996380:five_prime_UTR |
| ATGCACAACTATCCAAATGG+AGG | 0.677945 | 6_4:+74543929 | Msa0996380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAAATAAATTTTATAT+TGG | - | chr6_4:74540030-74540049 | None:intergenic | 0.0% |
| !!! | TATTTTCTCAATTTTAATTT+TGG | + | chr6_4:74538529-74538548 | Msa0996380:intron | 10.0% |
| !!! | ATTTAATTAGTCTATAAAAA+AGG | + | chr6_4:74538821-74538840 | Msa0996380:intron | 10.0% |
| !!! | ATTTTTTTTGAATCTATTAA+AGG | + | chr6_4:74538876-74538895 | Msa0996380:intron | 10.0% |
| !!! | ATTTTATTTTTAAGAATCAT+GGG | - | chr6_4:74540115-74540134 | None:intergenic | 10.0% |
| !!! | TATTTTATTTTTAAGAATCA+TGG | - | chr6_4:74540116-74540135 | None:intergenic | 10.0% |
| !!! | ATTTTATGTAAAAAAATTTG+AGG | + | chr6_4:74540358-74540377 | Msa0996380:intron | 10.0% |
| !!! | TTTTATGTAAAAAAATTTGA+GGG | + | chr6_4:74540359-74540378 | Msa0996380:intron | 10.0% |
| !! | CATCAAAATAAAATAAAAAT+TGG | + | chr6_4:74540472-74540491 | Msa0996380:intron | 10.0% |
| !!! | AGTTTTTAATAATATTTTAG+AGG | - | chr6_4:74540883-74540902 | None:intergenic | 10.0% |
| !!! | TTGTTTTAATTTGTTTTTAT+AGG | + | chr6_4:74540941-74540960 | Msa0996380:intron | 10.0% |
| !!! | GTATTTTTACATTTTTTTTA+AGG | + | chr6_4:74540995-74541014 | Msa0996380:intron | 10.0% |
| !!! | AATATATTAATTTCACTTTT+TGG | + | chr6_4:74541524-74541543 | Msa0996380:intron | 10.0% |
| !!! | ATTTTTGATATATAATATAG+TGG | + | chr6_4:74541600-74541619 | Msa0996380:intron | 10.0% |
| !!! | TTTTTGATATATAATATAGT+GGG | + | chr6_4:74541601-74541620 | Msa0996380:intron | 10.0% |
| !!! | TCATTTTTTCAAATTATTAT+CGG | - | chr6_4:74543174-74543193 | None:intergenic | 10.0% |
| !!! | AATCAAAAAGTTGATTTTTT+TGG | + | chr6_4:74537753-74537772 | Msa0996380:intron | 15.0% |
| !!! | ATCAAAAAGTTGATTTTTTT+GGG | + | chr6_4:74537754-74537773 | Msa0996380:intron | 15.0% |
| !!! | AAAAAATTCAACTTTTTGAA+TGG | - | chr6_4:74537804-74537823 | None:intergenic | 15.0% |
| !!! | TTAATTTTGTGTTATTTTTG+TGG | + | chr6_4:74537822-74537841 | Msa0996380:intron | 15.0% |
| !!! | AAGAAATTCAACTTTTTAAT+TGG | - | chr6_4:74537850-74537869 | None:intergenic | 15.0% |
| !!! | TCAATTTTAATTTTGGATTT+TGG | + | chr6_4:74538536-74538555 | Msa0996380:intron | 15.0% |
| !! | TCAAGGAATATTATAAAAAT+GGG | - | chr6_4:74538609-74538628 | None:intergenic | 15.0% |
| !! | TTCAAGGAATATTATAAAAA+TGG | - | chr6_4:74538610-74538629 | None:intergenic | 15.0% |
| !!! | TAAAATAGTTTTAGTGAAAA+AGG | + | chr6_4:74538757-74538776 | Msa0996380:intron | 15.0% |
| !! | AATTAATGTTGTGATAATTT+AGG | - | chr6_4:74538961-74538980 | None:intergenic | 15.0% |
| !!! | GAAAATAATTTTGTAATAGA+TGG | - | chr6_4:74539443-74539462 | None:intergenic | 15.0% |
| !! | AAACAAGAATTCATATTATT+AGG | - | chr6_4:74539731-74539750 | None:intergenic | 15.0% |
| !!! | AATAATATGAATTCTTGTTT+AGG | + | chr6_4:74539731-74539750 | Msa0996380:intron | 15.0% |
| !!! | ATAATATGAATTCTTGTTTA+GGG | + | chr6_4:74539732-74539751 | Msa0996380:intron | 15.0% |
| !!! | TTTTATTTTTAAGAATCATG+GGG | - | chr6_4:74540114-74540133 | None:intergenic | 15.0% |
| !!! | ATCAATTACAAACAAAATTT+TGG | + | chr6_4:74540260-74540279 | Msa0996380:intron | 15.0% |
| !! | GTCAAAAAAAAAAAATTTAG+AGG | - | chr6_4:74540856-74540875 | None:intergenic | 15.0% |
| !! | TCATCATAATTATTTACTAT+TGG | + | chr6_4:74541182-74541201 | Msa0996380:intron | 15.0% |
| !!! | ACATTTATTAACCTTTTAAT+CGG | - | chr6_4:74541425-74541444 | None:intergenic | 15.0% |
| !!! | ATAAGTTTTGATATATCTAT+AGG | + | chr6_4:74543319-74543338 | Msa0996380:intron | 15.0% |
| !! | AAAATTAGTTGAAAAAACTT+GGG | - | chr6_4:74543468-74543487 | None:intergenic | 15.0% |
| !! | AAAGTTTGTATAAAGAGAAA+CGG | - | chr6_4:74537119-74537138 | None:intergenic | 20.0% |
| !! | GAAGAAAGAAAAAAAACAAA+GGG | - | chr6_4:74537155-74537174 | None:intergenic | 20.0% |
| !! | TGAAGAAAGAAAAAAAACAA+AGG | - | chr6_4:74537156-74537175 | None:intergenic | 20.0% |
| !!! | TGATTTGCAATTATAATTCT+GGG | + | chr6_4:74537708-74537727 | Msa0996380:intron | 20.0% |
| !! | TTGATTGATCAATAAAAAGA+AGG | + | chr6_4:74538241-74538260 | Msa0996380:intron | 20.0% |
| !! | TGATAAAATTGAAGAGAAAT+TGG | + | chr6_4:74538323-74538342 | Msa0996380:intron | 20.0% |
| !! | AAAAAATATCAATTGATGCA+GGG | - | chr6_4:74539282-74539301 | None:intergenic | 20.0% |
| !!! | TAATTTTGTAATAGATGGTT+AGG | - | chr6_4:74539438-74539457 | None:intergenic | 20.0% |
| !!! | ATTACAAACAAAATTTTGGA+AGG | + | chr6_4:74540264-74540283 | Msa0996380:intron | 20.0% |
| !! | TCAGATAAGTATATATGAAA+AGG | - | chr6_4:74540427-74540446 | None:intergenic | 20.0% |
| !!! | AAATTATTTAAAATGACCTG+TGG | + | chr6_4:74540682-74540701 | Msa0996380:intron | 20.0% |
| !! | AAATGTAAAAATACAAGTTG+AGG | - | chr6_4:74540989-74541008 | None:intergenic | 20.0% |
| !! | ATAGATGAAAATAATTGTGT+TGG | + | chr6_4:74541244-74541263 | Msa0996380:intron | 20.0% |
| !! | AATAATTGTTGGATTGAAAT+TGG | + | chr6_4:74541309-74541328 | Msa0996380:intron | 20.0% |
| !!! | AATTTGAATTCTTAAGTTGT+TGG | + | chr6_4:74541449-74541468 | Msa0996380:intron | 20.0% |
| !!! | AATTGTACATGAATTTTTAG+TGG | - | chr6_4:74541783-74541802 | None:intergenic | 20.0% |
| !! | AAATTCATGACATCAAAAAA+TGG | - | chr6_4:74541985-74542004 | None:intergenic | 20.0% |
| !!! | TGTTTGATTATTGGTAATTT+AGG | + | chr6_4:74542116-74542135 | Msa0996380:intron | 20.0% |
| !! | AGAAAACTAAAGTTACAATT+TGG | - | chr6_4:74542184-74542203 | None:intergenic | 20.0% |
| !!! | TAAAATTCTAGCTTCAAATT+AGG | + | chr6_4:74542359-74542378 | Msa0996380:intron | 20.0% |
| !! | AAATTAGTTGAAAAAACTTG+GGG | - | chr6_4:74543467-74543486 | None:intergenic | 20.0% |
| !! | GAAAATTAGTTGAAAAAACT+TGG | - | chr6_4:74543469-74543488 | None:intergenic | 20.0% |
| !!! | AAAATTTTATGTGTCAATTG+TGG | - | chr6_4:74543771-74543790 | None:intergenic | 20.0% |
| !! | TCTTTGTAAAATTGTTTGAA+TGG | - | chr6_4:74543860-74543879 | None:intergenic | 20.0% |
| !!! | AGCTTCTTATTTGTAATTAA+GGG | - | chr6_4:74544073-74544092 | None:intergenic | 20.0% |
| !!! | AAGCTTCTTATTTGTAATTA+AGG | - | chr6_4:74544074-74544093 | None:intergenic | 20.0% |
| ! | AAGTTTGTATAAAGAGAAAC+GGG | - | chr6_4:74537118-74537137 | None:intergenic | 25.0% |
| ! | AGAAAAAAAACAAAGGGAAT+TGG | - | chr6_4:74537149-74537168 | None:intergenic | 25.0% |
| !! | GTGATTTGCAATTATAATTC+TGG | + | chr6_4:74537707-74537726 | Msa0996380:intron | 25.0% |
| !!! | GTTGAATTTCTTGTTTTTGA+TGG | + | chr6_4:74537858-74537877 | Msa0996380:intron | 25.0% |
| !!! | ACATTATAAACCGATTTTGT+CGG | + | chr6_4:74538052-74538071 | Msa0996380:intron | 25.0% |
| !! | ATGATGATGTGTATAATAGT+AGG | + | chr6_4:74538161-74538180 | Msa0996380:intron | 25.0% |
| !! | GATAAGAAGATTCATTGATT+TGG | + | chr6_4:74538363-74538382 | Msa0996380:intron | 25.0% |
| !! | TGATTTGGAATGAGAAAATA+AGG | + | chr6_4:74538378-74538397 | Msa0996380:intron | 25.0% |
| !! | GATTTGGAATGAGAAAATAA+GGG | + | chr6_4:74538379-74538398 | Msa0996380:intron | 25.0% |
| ! | TATTCCTTGAAGTATAGAAT+TGG | + | chr6_4:74538619-74538638 | Msa0996380:intron | 25.0% |
| ! | TATACCAATTCTATACTTCA+AGG | - | chr6_4:74538626-74538645 | None:intergenic | 25.0% |
| !!! | CATAAGTTTTTGTTTTTGAG+AGG | + | chr6_4:74538662-74538681 | Msa0996380:intron | 25.0% |
| ! | TCAGACAAAAATCATTTGAT+CGG | + | chr6_4:74539113-74539132 | Msa0996380:intron | 25.0% |
| !!! | TATTAAGGTTAAAAGTGTCA+CGG | - | chr6_4:74539149-74539168 | None:intergenic | 25.0% |
| ! | GAAAAAATATCAATTGATGC+AGG | - | chr6_4:74539283-74539302 | None:intergenic | 25.0% |
| ! | CAAAAGAATAAGATGTTTGA+TGG | + | chr6_4:74539496-74539515 | Msa0996380:intron | 25.0% |
| ! | AATTGAATAACATGTGTTAC+AGG | - | chr6_4:74540055-74540074 | None:intergenic | 25.0% |
| ! | ATTCATTATTCATGCATATG+TGG | + | chr6_4:74540072-74540091 | Msa0996380:intron | 25.0% |
| ! | TTCATTATTCATGCATATGT+GGG | + | chr6_4:74540073-74540092 | Msa0996380:intron | 25.0% |
| !! | AGTGTTCTTCTTTCTAATTT+TGG | + | chr6_4:74540186-74540205 | Msa0996380:intron | 25.0% |
| !! | GTGTTCTTCTTTCTAATTTT+GGG | + | chr6_4:74540187-74540206 | Msa0996380:intron | 25.0% |
| !! | TGGAAGGAAAAAAAAACTTT+TGG | + | chr6_4:74540280-74540299 | Msa0996380:intron | 25.0% |
| ! | TAAAATTCTGAGTTTGAATC+TGG | + | chr6_4:74540393-74540412 | Msa0996380:intron | 25.0% |
| ! | AAAATTCTGAGTTTGAATCT+GGG | + | chr6_4:74540394-74540413 | Msa0996380:intron | 25.0% |
| !!! | TTATTTTGATGTTAGTCTAG+TGG | - | chr6_4:74540463-74540482 | None:intergenic | 25.0% |
| ! | TAGTATAAAAGTCATTCATG+TGG | + | chr6_4:74540615-74540634 | Msa0996380:intron | 25.0% |
| ! | AAATTATATATGTTAGCACG+TGG | - | chr6_4:74541056-74541075 | None:intergenic | 25.0% |
| ! | ATTATGATGAAAGAACAATG+TGG | - | chr6_4:74541172-74541191 | None:intergenic | 25.0% |
| ! | GTCAACACATAAATAATTGT+TGG | + | chr6_4:74541298-74541317 | Msa0996380:intron | 25.0% |
| ! | ACCATAAAACTAACTATAGA+AGG | + | chr6_4:74541500-74541519 | Msa0996380:intron | 25.0% |
| ! | AAAAAGGATAGTAGACATTA+TGG | - | chr6_4:74541577-74541596 | None:intergenic | 25.0% |
| !! | GATATATAATATAGTGGGAA+AGG | + | chr6_4:74541606-74541625 | Msa0996380:intron | 25.0% |
| !! | ATAAAGGGATATATTTTCCT+TGG | + | chr6_4:74541630-74541649 | Msa0996380:intron | 25.0% |
| ! | TATATCATCATTATTGAGGA+TGG | - | chr6_4:74541679-74541698 | None:intergenic | 25.0% |
| ! | ACACTATATCATCATTATTG+AGG | - | chr6_4:74541683-74541702 | None:intergenic | 25.0% |
| ! | CTATATATAGAAATGTAGAG+TGG | - | chr6_4:74541721-74541740 | None:intergenic | 25.0% |
| ! | CACTCTACATTTCTATATAT+AGG | + | chr6_4:74541719-74541738 | Msa0996380:intron | 25.0% |
| ! | ATTTCTATATATAGGCTCAT+AGG | + | chr6_4:74541727-74541746 | Msa0996380:intron | 25.0% |
| !! | TTTTTACCTCAAATAGCTTT+AGG | + | chr6_4:74541801-74541820 | Msa0996380:intron | 25.0% |
| ! | CATTTACTTATATACACAAG+TGG | - | chr6_4:74541829-74541848 | None:intergenic | 25.0% |
| ! | CACTTGTGTATATAAGTAAA+TGG | + | chr6_4:74541827-74541846 | Msa0996380:intron | 25.0% |
| ! | TTGTGTATATAAGTAAATGG+AGG | + | chr6_4:74541830-74541849 | Msa0996380:intron | 25.0% |
| ! | TGTGTATATAAGTAAATGGA+GGG | + | chr6_4:74541831-74541850 | Msa0996380:intron | 25.0% |
| !!! | GTTATTGACTTCAAATTTGA+TGG | + | chr6_4:74541920-74541939 | Msa0996380:intron | 25.0% |
| ! | TCAAAAAATGGTTAGGATTT+AGG | - | chr6_4:74541973-74541992 | None:intergenic | 25.0% |
| !!! | GATGTCATGAATTTTAACAA+AGG | + | chr6_4:74541991-74542010 | Msa0996380:intron | 25.0% |
| !! | TGATTATTGGTAATTTAGGT+TGG | + | chr6_4:74542120-74542139 | Msa0996380:intron | 25.0% |
| ! | TAAGACATCATTAAACACTT+AGG | - | chr6_4:74542595-74542614 | None:intergenic | 25.0% |
| ! | GTCTTATATGTTTATGTAAC+AGG | + | chr6_4:74542609-74542628 | Msa0996380:intron | 25.0% |
| ! | AATTGATCAAATATTGAACC+TGG | - | chr6_4:74542730-74542749 | None:intergenic | 25.0% |
| !! | TTTCTTGAGAGTTTTCAAAT+TGG | + | chr6_4:74542748-74542767 | Msa0996380:CDS | 25.0% |
| ! | ATTCATAGTTACTTGTGTAA+GGG | + | chr6_4:74543078-74543097 | Msa0996380:intron | 25.0% |
| ! | TTTCAAATTATTATCGGTGT+CGG | - | chr6_4:74543168-74543187 | None:intergenic | 25.0% |
| ! | GCTAATTATCTACACATAAA+AGG | - | chr6_4:74543366-74543385 | None:intergenic | 25.0% |
| ! | AAATAAAACAACATGTCTAG+AGG | - | chr6_4:74543558-74543577 | None:intergenic | 25.0% |
| ! | AAAAAAAGCAGAATATGCAT+AGG | - | chr6_4:74543598-74543617 | None:intergenic | 25.0% |
| ! | AGTAAGATCCTCTAAATAAT+TGG | - | chr6_4:74543725-74543744 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTTATTCATTTGC+AGG | + | chr6_4:74543808-74543827 | Msa0996380:intron | 25.0% |
| ! | ATTGCTTGTGATTATTTCAA+TGG | + | chr6_4:74543893-74543912 | Msa0996380:CDS | 25.0% |
| ! | AATCAAATCCAAGAACAATT+TGG | + | chr6_4:74543966-74543985 | Msa0996380:CDS | 25.0% |
| !!! | CAATTTGGTTCTACAAATTT+TGG | + | chr6_4:74543981-74544000 | Msa0996380:CDS | 25.0% |
| ! | CAAATAAGAAGCTTAAGATT+AGG | + | chr6_4:74544080-74544099 | Msa0996380:CDS | 25.0% |
| AAACAAAGGGAATTGGAATT+GGG | - | chr6_4:74537142-74537161 | None:intergenic | 30.0% | |
| AAAACAAAGGGAATTGGAAT+TGG | - | chr6_4:74537143-74537162 | None:intergenic | 30.0% | |
| ! | AAAGTTTGAGGTTGTTTGTT+TGG | - | chr6_4:74537217-74537236 | None:intergenic | 30.0% |
| CCTAGTATAAACAAAGTTTG+AGG | - | chr6_4:74537229-74537248 | None:intergenic | 30.0% | |
| ! | CCTCAAACTTTGTTTATACT+AGG | + | chr6_4:74537226-74537245 | Msa0996380:five_prime_UTR | 30.0% |
| ! | TTTTTGTGACACCACAATTA+AGG | + | chr6_4:74537386-74537405 | Msa0996380:five_prime_UTR | 30.0% |
| TTCTATCACAACCTTAATTG+TGG | - | chr6_4:74537400-74537419 | None:intergenic | 30.0% | |
| ACTATCTCACATTACTTCAA+TGG | + | chr6_4:74537614-74537633 | Msa0996380:CDS | 30.0% | |
| !! | TTGACTTGGAGAATCAAAAT+TGG | - | chr6_4:74537917-74537936 | None:intergenic | 30.0% |
| ! | TTTTCTGTTCATGTTTGACT+TGG | - | chr6_4:74537931-74537950 | None:intergenic | 30.0% |
| !! | CATTATAAACCGATTTTGTC+GGG | + | chr6_4:74538053-74538072 | Msa0996380:intron | 30.0% |
| !!! | TGCCTATTTTGTTTTTTGAG+TGG | + | chr6_4:74538081-74538100 | Msa0996380:intron | 30.0% |
| CTCCACTCAAAAAACAAAAT+AGG | - | chr6_4:74538086-74538105 | None:intergenic | 30.0% | |
| ACACATCATCATCACTATTT+AGG | - | chr6_4:74538153-74538172 | None:intergenic | 30.0% | |
| ! | AATAAGGGCTAGTAGAAAAT+AGG | + | chr6_4:74538394-74538413 | Msa0996380:intron | 30.0% |
| TAGTAGAAAATAGGTACTAG+TGG | + | chr6_4:74538403-74538422 | Msa0996380:intron | 30.0% | |
| ! | AAAAGATTACGTTTGCTGAT+TGG | + | chr6_4:74538461-74538480 | Msa0996380:intron | 30.0% |
| ! | AAAGATTACGTTTGCTGATT+GGG | + | chr6_4:74538462-74538481 | Msa0996380:intron | 30.0% |
| AGGAAAATCATATGCAAGTT+GGG | + | chr6_4:74538682-74538701 | Msa0996380:intron | 30.0% | |
| ! | TGTGGATATGTTCACATTTT+AGG | - | chr6_4:74539343-74539362 | None:intergenic | 30.0% |
| AAAATGTGAACATATCCACA+AGG | + | chr6_4:74539343-74539362 | Msa0996380:intron | 30.0% | |
| AATAGATGGTTAGGTTAAGT+AGG | - | chr6_4:74539429-74539448 | None:intergenic | 30.0% | |
| TCATTATTCATGCATATGTG+GGG | + | chr6_4:74540074-74540093 | Msa0996380:intron | 30.0% | |
| TTTAAGAATCATGGGGATTT+AGG | - | chr6_4:74540107-74540126 | None:intergenic | 30.0% | |
| !!! | TGGACCACATGTTATTTTAT+TGG | + | chr6_4:74540635-74540654 | Msa0996380:intron | 30.0% |
| GTCACCAATAAAATAACATG+TGG | - | chr6_4:74540642-74540661 | None:intergenic | 30.0% | |
| AACTTAAATCACAAAACCAC+AGG | - | chr6_4:74540701-74540720 | None:intergenic | 30.0% | |
| TTGCATGTTTGTGACAATAT+TGG | + | chr6_4:74541026-74541045 | Msa0996380:intron | 30.0% | |
| ! | GTTGACTCTATGAATAAAGT+GGG | - | chr6_4:74541284-74541303 | None:intergenic | 30.0% |
| !! | TGTTGACTCTATGAATAAAG+TGG | - | chr6_4:74541285-74541304 | None:intergenic | 30.0% |
| !! | ATGTTCGTTGATTCGAAATT+AGG | - | chr6_4:74541391-74541410 | None:intergenic | 30.0% |
| ! | CGATGTATTTACCGATTAAA+AGG | + | chr6_4:74541411-74541430 | Msa0996380:intron | 30.0% |
| !!! | GCCTTCTATAGTTAGTTTTA+TGG | - | chr6_4:74541504-74541523 | None:intergenic | 30.0% |
| ATAGTAGACATTATGGATCA+TGG | - | chr6_4:74541570-74541589 | None:intergenic | 30.0% | |
| ! | ATATAGTGGGAAAGGAATAA+AGG | + | chr6_4:74541614-74541633 | Msa0996380:intron | 30.0% |
| ! | TATAGTGGGAAAGGAATAAA+GGG | + | chr6_4:74541615-74541634 | Msa0996380:intron | 30.0% |
| CAAAGAATAATATCCTACCA+AGG | - | chr6_4:74541650-74541669 | None:intergenic | 30.0% | |
| TGGTAGGATATTATTCTTTG+AGG | + | chr6_4:74541650-74541669 | Msa0996380:intron | 30.0% | |
| GTGTATATAAGTAAATGGAG+GGG | + | chr6_4:74541832-74541851 | Msa0996380:intron | 30.0% | |
| TGTATATAAGTAAATGGAGG+GGG | + | chr6_4:74541833-74541852 | Msa0996380:intron | 30.0% | |
| !!! | GATGGCTTTAATGTACTTTT+TGG | + | chr6_4:74541938-74541957 | Msa0996380:intron | 30.0% |
| CATGACATCAAAAAATGGTT+AGG | - | chr6_4:74541980-74541999 | None:intergenic | 30.0% | |
| GGAATCTTGTTGAATACATT+AGG | + | chr6_4:74542071-74542090 | Msa0996380:intron | 30.0% | |
| ! | CTTTTGCTCTGTTTGATTAT+TGG | + | chr6_4:74542107-74542126 | Msa0996380:intron | 30.0% |
| ! | TAAATGCATGTTTGGAATCA+CGG | + | chr6_4:74542419-74542438 | Msa0996380:intron | 30.0% |
| TAAGACATTCATCAATGACA+TGG | - | chr6_4:74542547-74542566 | None:intergenic | 30.0% | |
| ! | TTAAGAACACTCTTTAGCTT+TGG | - | chr6_4:74542646-74542665 | None:intergenic | 30.0% |
| TCTTAAACAAGCATCAATGA+AGG | + | chr6_4:74542660-74542679 | Msa0996380:CDS | 30.0% | |
| CTTAAACAAGCATCAATGAA+GGG | + | chr6_4:74542661-74542680 | Msa0996380:CDS | 30.0% | |
| ! | TTGAGAGTTTTCAAATTGGT+GGG | + | chr6_4:74542752-74542771 | Msa0996380:CDS | 30.0% |
| ATCATCTTGTGGTAATAACA+TGG | + | chr6_4:74542797-74542816 | Msa0996380:CDS | 30.0% | |
| TCATCTTGTGGTAATAACAT+GGG | + | chr6_4:74542798-74542817 | Msa0996380:CDS | 30.0% | |
| TGTTACCAACTTCAAACTAA+AGG | + | chr6_4:74542862-74542881 | Msa0996380:CDS | 30.0% | |
| AGTCATGAAAAAAGCTTCAT+TGG | - | chr6_4:74542899-74542918 | None:intergenic | 30.0% | |
| CACATCATGTGTAAATATGT+TGG | - | chr6_4:74542922-74542941 | None:intergenic | 30.0% | |
| CAACATATTTACACATGATG+TGG | + | chr6_4:74542920-74542939 | Msa0996380:CDS | 30.0% | |
| TGGAGAAGAATTGAATTTCT+TGG | + | chr6_4:74542940-74542959 | Msa0996380:CDS | 30.0% | |
| GATTCATAGTTACTTGTGTA+AGG | + | chr6_4:74543077-74543096 | Msa0996380:intron | 30.0% | |
| TTCATAGTTACTTGTGTAAG+GGG | + | chr6_4:74543079-74543098 | Msa0996380:intron | 30.0% | |
| TTGTAGAACCAAATTGTTCT+TGG | - | chr6_4:74543977-74543996 | None:intergenic | 30.0% | |
| ! | TTCTTAAGCACAAGCTATTT+TGG | + | chr6_4:74544103-74544122 | Msa0996380:CDS | 30.0% |
| ! | TGATCTTAAGATTTTGCTTG+AGG | + | chr6_4:74544210-74544229 | Msa0996380:CDS | 30.0% |
| ! | TTAAGATTTTGCTTGAGGAT+TGG | + | chr6_4:74544215-74544234 | Msa0996380:CDS | 30.0% |
| ! | GAAGTTTTTCTCTTATCTTC+AGG | - | chr6_4:74544259-74544278 | None:intergenic | 30.0% |
| TTTGTTTGGTACTCTTTGGA+AGG | - | chr6_4:74537203-74537222 | None:intergenic | 35.0% | |
| GTTGTTTGTTTGGTACTCTT+TGG | - | chr6_4:74537207-74537226 | None:intergenic | 35.0% | |
| AGATACATACACCTTAGTGT+TGG | + | chr6_4:74537284-74537303 | Msa0996380:five_prime_UTR | 35.0% | |
| ! | TGTTTTCTTCACCAACACTA+AGG | - | chr6_4:74537298-74537317 | None:intergenic | 35.0% |
| AACAAGTCATGGAAGTCAAT+TGG | + | chr6_4:74537473-74537492 | Msa0996380:CDS | 35.0% | |
| !! | AAGCCATGTTTTTGTGAAGA+GGG | + | chr6_4:74537502-74537521 | Msa0996380:CDS | 35.0% |
| TAACCCTCTTCACAAAAACA+TGG | - | chr6_4:74537508-74537527 | None:intergenic | 35.0% | |
| ! | AACAATTCTGCTTCTCCTTT+TGG | + | chr6_4:74537581-74537600 | Msa0996380:CDS | 35.0% |
| AAGTAATGTGAGATAGTAGC+AGG | - | chr6_4:74537611-74537630 | None:intergenic | 35.0% | |
| CATCATCATCACTATTTAGG+TGG | - | chr6_4:74538150-74538169 | None:intergenic | 35.0% | |
| !!! | TCTTTTTCAGCAGACTCTTA+AGG | + | chr6_4:74538492-74538511 | Msa0996380:intron | 35.0% |
| !!! | CTTTTTCAGCAGACTCTTAA+GGG | + | chr6_4:74538493-74538512 | Msa0996380:intron | 35.0% |
| !! | TTTTTCAGCAGACTCTTAAG+GGG | + | chr6_4:74538494-74538513 | Msa0996380:intron | 35.0% |
| !! | TTTTGGATTTTGGCACCATT+CGG | + | chr6_4:74538546-74538565 | Msa0996380:intron | 35.0% |
| GAGGAAAATCATATGCAAGT+TGG | + | chr6_4:74538681-74538700 | Msa0996380:intron | 35.0% | |
| ! | AATCATATGCAAGTTGGGAT+TGG | + | chr6_4:74538687-74538706 | Msa0996380:intron | 35.0% |
| ! | ATCATATGCAAGTTGGGATT+GGG | + | chr6_4:74538688-74538707 | Msa0996380:intron | 35.0% |
| !! | TTTCTAGAATGTGGGGAAAT+GGG | - | chr6_4:74539317-74539336 | None:intergenic | 35.0% |
| !! | TTAGGAGGTTTCTAGAATGT+GGG | - | chr6_4:74539325-74539344 | None:intergenic | 35.0% |
| !! | TTTAGGAGGTTTCTAGAATG+TGG | - | chr6_4:74539326-74539345 | None:intergenic | 35.0% |
| ! | GGATATGTTCACATTTTAGG+AGG | - | chr6_4:74539340-74539359 | None:intergenic | 35.0% |
| AACATATCCACAAGGAGAAT+AGG | + | chr6_4:74539351-74539370 | Msa0996380:intron | 35.0% | |
| GTTATGAACTGCGTATCAAA+AGG | + | chr6_4:74539552-74539571 | Msa0996380:intron | 35.0% | |
| GTTCTTGCTTATGCATTAAG+AGG | - | chr6_4:74539629-74539648 | None:intergenic | 35.0% | |
| !! | TTCAGTCTTGAGTTGAGTTT+GGG | - | chr6_4:74539651-74539670 | None:intergenic | 35.0% |
| !! | TTTCAGTCTTGAGTTGAGTT+TGG | - | chr6_4:74539652-74539671 | None:intergenic | 35.0% |
| GAATTCATATTATTAGGCCC+CGG | - | chr6_4:74539725-74539744 | None:intergenic | 35.0% | |
| AAGACAGATAAATTGCTCAC+AGG | - | chr6_4:74539892-74539911 | None:intergenic | 35.0% | |
| ! | AATCAACAGAAGCACATGTT+CGG | - | chr6_4:74539993-74540012 | None:intergenic | 35.0% |
| CAGAGCTTAACAAGTGAAAA+TGG | - | chr6_4:74540546-74540565 | None:intergenic | 35.0% | |
| GTCAACCTTTAGTCTACATT+GGG | - | chr6_4:74541116-74541135 | None:intergenic | 35.0% | |
| AGTCAACCTTTAGTCTACAT+TGG | - | chr6_4:74541117-74541136 | None:intergenic | 35.0% | |
| AATGTAGACTAAAGGTTGAC+TGG | + | chr6_4:74541116-74541135 | Msa0996380:intron | 35.0% | |
| ! | AGGGATATATTTTCCTTGGT+AGG | + | chr6_4:74541634-74541653 | Msa0996380:intron | 35.0% |
| GTATATAAGTAAATGGAGGG+GGG | + | chr6_4:74541834-74541853 | Msa0996380:intron | 35.0% | |
| AACATACAATGAACGCAAGA+TGG | - | chr6_4:74541865-74541884 | None:intergenic | 35.0% | |
| TCCAAAATCAATACACACCA+AGG | - | chr6_4:74542217-74542236 | None:intergenic | 35.0% | |
| CCAAACATGCATTTAAGTCA+TGG | - | chr6_4:74542414-74542433 | None:intergenic | 35.0% | |
| CCATGACTTAAATGCATGTT+TGG | + | chr6_4:74542411-74542430 | Msa0996380:intron | 35.0% | |
| GTTTGAATTAGCGATGAGTT+AGG | - | chr6_4:74542481-74542500 | None:intergenic | 35.0% | |
| TCACAACATTGAATGATGCA+TGG | + | chr6_4:74542698-74542717 | Msa0996380:CDS | 35.0% | |
| CACAACATTGAATGATGCAT+GGG | + | chr6_4:74542699-74542718 | Msa0996380:CDS | 35.0% | |
| ! | CTTGAGAGTTTTCAAATTGG+TGG | + | chr6_4:74542751-74542770 | Msa0996380:CDS | 35.0% |
| GAACCAAACACAAATGCTAT+TGG | + | chr6_4:74542774-74542793 | Msa0996380:CDS | 35.0% | |
| GATCCAATAGCATTTGTGTT+TGG | - | chr6_4:74542780-74542799 | None:intergenic | 35.0% | |
| AATGCTATTGGATCATCTTG+TGG | + | chr6_4:74542786-74542805 | Msa0996380:CDS | 35.0% | |
| !! | TGTCACCTTTAGTTTGAAGT+TGG | - | chr6_4:74542870-74542889 | None:intergenic | 35.0% |
| !!! | GGGATATAGCTTTGTTTTCA+CGG | + | chr6_4:74542978-74542997 | Msa0996380:CDS | 35.0% |
| ATTGTCTCTATGTGTGTGAA+TGG | - | chr6_4:74543048-74543067 | None:intergenic | 35.0% | |
| !! | TAAACTAAGAAGCACTGACA+CGG | + | chr6_4:74543120-74543139 | Msa0996380:intron | 35.0% |
| GTAATCATATGTGTCAGTGT+CGG | + | chr6_4:74543205-74543224 | Msa0996380:intron | 35.0% | |
| TAATCATATGTGTCAGTGTC+GGG | + | chr6_4:74543206-74543225 | Msa0996380:intron | 35.0% | |
| GGGTTAGACCAATTATTTAG+AGG | + | chr6_4:74543714-74543733 | Msa0996380:intron | 35.0% | |
| ACATATGTGAATCCTCCATT+TGG | - | chr6_4:74543944-74543963 | None:intergenic | 35.0% | |
| ACATCTTGATCATGCATAGT+TGG | - | chr6_4:74544028-74544047 | None:intergenic | 35.0% | |
| !! | TTAAGCACAAGCTATTTTGG+AGG | + | chr6_4:74544106-74544125 | Msa0996380:CDS | 35.0% |
| !! | TAAGCACAAGCTATTTTGGA+GGG | + | chr6_4:74544107-74544126 | Msa0996380:CDS | 35.0% |
| ! | TGTCAATCTAGCAAGGATTT+TGG | + | chr6_4:74544133-74544152 | Msa0996380:CDS | 35.0% |
| ATGCATGCTAATTGTTGTGT+TGG | + | chr6_4:74544169-74544188 | Msa0996380:CDS | 35.0% | |
| ! | TGAGGATTGGAAGAAGTATA+TGG | + | chr6_4:74544228-74544247 | Msa0996380:CDS | 35.0% |
| AAGAATCATTATGCTGCTGC+CGG | + | chr6_4:74537422-74537441 | Msa0996380:CDS | 40.0% | |
| TCATGGAAGTCAATTGGAAC+AGG | + | chr6_4:74537479-74537498 | Msa0996380:CDS | 40.0% | |
| !! | GAAGCCATGTTTTTGTGAAG+AGG | + | chr6_4:74537501-74537520 | Msa0996380:CDS | 40.0% |
| ATAGTAGCAGGAAGACCAAA+AGG | - | chr6_4:74537599-74537618 | None:intergenic | 40.0% | |
| !! | TGATGTCTGCTTTGTTGTTG+TGG | + | chr6_4:74537890-74537909 | Msa0996380:intron | 40.0% |
| !! | GATGTCTGCTTTGTTGTTGT+GGG | + | chr6_4:74537891-74537910 | Msa0996380:intron | 40.0% |
| CATCATCACTATTTAGGTGG+AGG | - | chr6_4:74538147-74538166 | None:intergenic | 40.0% | |
| ! | TCATATGCAAGTTGGGATTG+GGG | + | chr6_4:74538689-74538708 | Msa0996380:intron | 40.0% |
| ACTCAACACGTTGGAAACAA+CGG | - | chr6_4:74539245-74539264 | None:intergenic | 40.0% | |
| !! | TTCTAGAATGTGGGGAAATG+GGG | - | chr6_4:74539316-74539335 | None:intergenic | 40.0% |
| !! | GTTTCTAGAATGTGGGGAAA+TGG | - | chr6_4:74539318-74539337 | None:intergenic | 40.0% |
| !! | TAGGAGGTTTCTAGAATGTG+GGG | - | chr6_4:74539324-74539343 | None:intergenic | 40.0% |
| AGAATAGGAGATGCATGAAG+AGG | + | chr6_4:74539366-74539385 | Msa0996380:intron | 40.0% | |
| GAATAGGAGATGCATGAAGA+GGG | + | chr6_4:74539367-74539386 | Msa0996380:intron | 40.0% | |
| CGAAACAACGAGTCTCAAAA+AGG | + | chr6_4:74539395-74539414 | Msa0996380:intron | 40.0% | |
| ! | ATCAACAGAAGCACATGTTC+GGG | - | chr6_4:74539992-74540011 | None:intergenic | 40.0% |
| AGCACGTAACAGTAACAATG+AGG | - | chr6_4:74540318-74540337 | None:intergenic | 40.0% | |
| AGCTGGTTATGTCTGATCAA+TGG | - | chr6_4:74541079-74541098 | None:intergenic | 40.0% | |
| GTTGTCCCAATGTAGACTAA+AGG | + | chr6_4:74541108-74541127 | Msa0996380:intron | 40.0% | |
| ! | GCTCATAGGTGAGATTTTGA+AGG | + | chr6_4:74541741-74541760 | Msa0996380:intron | 40.0% |
| TACAATGAACGCAAGATGGT+TGG | - | chr6_4:74541861-74541880 | None:intergenic | 40.0% | |
| ! | GTTTTCTTCTACCATTGCCT+TGG | + | chr6_4:74542197-74542216 | Msa0996380:intron | 40.0% |
| ATCAATACACACCAAGGCAA+TGG | - | chr6_4:74542211-74542230 | None:intergenic | 40.0% | |
| !!! | GCCTTGGTGTGTATTGATTT+TGG | + | chr6_4:74542213-74542232 | Msa0996380:intron | 40.0% |
| CGGTAAGTTTGACAAACTCA+CGG | + | chr6_4:74542439-74542458 | Msa0996380:intron | 40.0% | |
| !!! | TGTGTGTTTGGTTCTCCTTT+TGG | - | chr6_4:74542520-74542539 | None:intergenic | 40.0% |
| ! | TGACATGGAAAGTGTGTGTT+TGG | - | chr6_4:74542532-74542551 | None:intergenic | 40.0% |
| !! | TGCAACGAGAGTATGCTTTT+TGG | - | chr6_4:74542825-74542844 | None:intergenic | 40.0% |
| !! | TCTTGGTGCTGTTCTTCATT+TGG | + | chr6_4:74542957-74542976 | Msa0996380:CDS | 40.0% |
| !! | CTTGGTGCTGTTCTTCATTT+GGG | + | chr6_4:74542958-74542977 | Msa0996380:CDS | 40.0% |
| GCATTGCTTATGTAGGTGTT+TGG | + | chr6_4:74543282-74543301 | Msa0996380:intron | 40.0% | |
| TAAGCTGCATAGAGTTGTGA+AGG | + | chr6_4:74543692-74543711 | Msa0996380:intron | 40.0% | |
| AAGCTGCATAGAGTTGTGAA+GGG | + | chr6_4:74543693-74543712 | Msa0996380:intron | 40.0% | |
| TGCAGGACACTGATATAATG+TGG | + | chr6_4:74543825-74543844 | Msa0996380:intron | 40.0% | |
| TGGATAGTTGTGCATGTCAA+AGG | - | chr6_4:74543924-74543943 | None:intergenic | 40.0% | |
| GACATGCACAACTATCCAAA+TGG | + | chr6_4:74543926-74543945 | Msa0996380:CDS | 40.0% | |
| ATGCACAACTATCCAAATGG+AGG | + | chr6_4:74543929-74543948 | Msa0996380:CDS | 40.0% | |
| !! | AGGGTTTTGTCAATCTAGCA+AGG | + | chr6_4:74544126-74544145 | Msa0996380:CDS | 40.0% |
| !! | TGCTAATTGTTGTGTTGGCT+TGG | + | chr6_4:74544174-74544193 | Msa0996380:CDS | 40.0% |
| GAAAAACTTCACACCCTTCT+TGG | + | chr6_4:74544269-74544288 | Msa0996380:CDS | 40.0% | |
| !! | TTTTTGGCACACTCCAAGAA+GGG | - | chr6_4:74544285-74544304 | None:intergenic | 40.0% |
| !!! | TTGTTGCTTTTGCTGTGCTG+TGG | + | chr6_4:74537546-74537565 | Msa0996380:CDS | 45.0% |
| GGCAGAAAACCCGACAAAAT+CGG | - | chr6_4:74538065-74538084 | None:intergenic | 45.0% | |
| AAATAGGTACTAGTGGCGTG+TGG | + | chr6_4:74538410-74538429 | Msa0996380:intron | 45.0% | |
| AATAGGTACTAGTGGCGTGT+GGG | + | chr6_4:74538411-74538430 | Msa0996380:intron | 45.0% | |
| ! | AGTTGAAGCACTCAACACGT+TGG | - | chr6_4:74539254-74539273 | None:intergenic | 45.0% |
| TGCATCTCCTATTCTCCTTG+TGG | - | chr6_4:74539361-74539380 | None:intergenic | 45.0% | |
| GAACTGCGTATCAAAAGGCA+AGG | + | chr6_4:74539557-74539576 | Msa0996380:intron | 45.0% | |
| GACACAGCTAAAGACAACAC+TGG | + | chr6_4:74539699-74539718 | Msa0996380:intron | 45.0% | |
| TCTACATTGGGACAACCATG+TGG | - | chr6_4:74541104-74541123 | None:intergenic | 45.0% | |
| GTGGCTCCTAAAGCTATTTG+AGG | - | chr6_4:74541810-74541829 | None:intergenic | 45.0% | |
| CGATGAGTTAGGCAGAATCA+AGG | - | chr6_4:74542470-74542489 | None:intergenic | 45.0% | |
| TACAACTCGACACCTCCAAA+AGG | + | chr6_4:74542502-74542521 | Msa0996380:intron | 45.0% | |
| !!! | GTGTTTGGTTCTCCTTTTGG+AGG | - | chr6_4:74542517-74542536 | None:intergenic | 45.0% |
| CCTACATAAGCAATGCAGCA+TGG | - | chr6_4:74543278-74543297 | None:intergenic | 45.0% | |
| CCATGCTGCATTGCTTATGT+AGG | + | chr6_4:74543275-74543294 | Msa0996380:intron | 45.0% | |
| CTATGCCAGATAAGCTCAAC+AGG | + | chr6_4:74543441-74543460 | Msa0996380:intron | 45.0% | |
| AGCTGCATAGAGTTGTGAAG+GGG | + | chr6_4:74543694-74543713 | Msa0996380:intron | 45.0% | |
| !! | TTGTGTTGGCTTGGAGAACA+AGG | + | chr6_4:74544183-74544202 | Msa0996380:CDS | 45.0% |
| !! | CTTTTTGGCACACTCCAAGA+AGG | - | chr6_4:74544286-74544305 | None:intergenic | 45.0% |
| !! | ATTAGAATATTATTTATTTA+AGG | + | chr6_4:74538853-74538872 | Msa0996380:intron | 5.0% |
| !!! | ATTAAATTTGTTTTTTATTA+AGG | - | chr6_4:74539164-74539183 | None:intergenic | 5.0% |
| !!! | AAAGTTTTAATTTTTTTTTT+TGG | - | chr6_4:74539190-74539209 | None:intergenic | 5.0% |
| !! | CTATTATTATATTATTATAT+TGG | - | chr6_4:74540598-74540617 | None:intergenic | 5.0% |
| !! | ATATATCAAAAATATAAAAA+AGG | - | chr6_4:74541593-74541612 | None:intergenic | 5.0% |
| !! | CCATGACTTGTTCCCTTCTC+CGG | - | chr6_4:74537465-74537484 | None:intergenic | 50.0% |
| ATAGGTACTAGTGGCGTGTG+GGG | + | chr6_4:74538412-74538431 | Msa0996380:intron | 50.0% | |
| GCACCATTCGGAATTGTGTG+AGG | + | chr6_4:74538558-74538577 | Msa0996380:intron | 50.0% | |
| CCTCCTCACACAATTCCGAA+TGG | - | chr6_4:74538564-74538583 | None:intergenic | 50.0% | |
| CCATTCGGAATTGTGTGAGG+AGG | + | chr6_4:74538561-74538580 | Msa0996380:intron | 50.0% | |
| GGAATTGTGTGAGGAGGAAG+AGG | + | chr6_4:74538567-74538586 | Msa0996380:intron | 50.0% | |
| CAGCTAAAGACAACACTGGC+CGG | + | chr6_4:74539703-74539722 | Msa0996380:intron | 50.0% | |
| AGCTAAAGACAACACTGGCC+GGG | + | chr6_4:74539704-74539723 | Msa0996380:intron | 50.0% | |
| GACATAACCAGCTGTCCACA+TGG | + | chr6_4:74541086-74541105 | Msa0996380:intron | 50.0% | |
| ! | AATGATGCATGGGCTGAACC+AGG | + | chr6_4:74542709-74542728 | Msa0996380:CDS | 50.0% |
| ACCAACGCATGTTTGGCATC+TGG | + | chr6_4:74543230-74543249 | Msa0996380:intron | 50.0% | |
| TCCAGATGCCAAACATGCGT+TGG | - | chr6_4:74543234-74543253 | None:intergenic | 50.0% | |
| ATCTGGACGCACCTTATTCG+AGG | + | chr6_4:74543247-74543266 | Msa0996380:intron | 50.0% | |
| GCATGGACACTCCTCGAATA+AGG | - | chr6_4:74543261-74543280 | None:intergenic | 50.0% | |
| GGAGTGTGCCAAAAAGTTGC+AGG | + | chr6_4:74544290-74544309 | Msa0996380:CDS | 50.0% | |
| TTCTCCGGCAACGTTGTCGA+CGG | - | chr6_4:74537450-74537469 | None:intergenic | 55.0% | |
| TCGACAACGTTGCCGGAGAA+GGG | + | chr6_4:74537450-74537469 | Msa0996380:CDS | 55.0% | |
| CCGGAGAAGGGAACAAGTCA+TGG | + | chr6_4:74537462-74537481 | Msa0996380:CDS | 55.0% | |
| GCTAAAGACAACACTGGCCG+GGG | + | chr6_4:74539705-74539724 | Msa0996380:intron | 55.0% | |
| TGGGGCCTGTTGAGCTTATC+TGG | - | chr6_4:74543449-74543468 | None:intergenic | 55.0% | |
| GTCGACAACGTTGCCGGAGA+AGG | + | chr6_4:74537449-74537468 | Msa0996380:CDS | 60.0% | |
| GGGACAACCATGTGGACAGC+TGG | - | chr6_4:74541096-74541115 | None:intergenic | 60.0% | |
| GTCGGGCACCAACGCATGTT+TGG | + | chr6_4:74543223-74543242 | Msa0996380:intron | 60.0% | |
| GGCAACGTTGTCGACGGCAC+CGG | - | chr6_4:74537444-74537463 | None:intergenic | 65.0% | |
| ! | GGTGCCGTCGACAACGTTGC+CGG | + | chr6_4:74537443-74537462 | Msa0996380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 74537065 | 74544315 | 74537065 | ID=Msa0996380;Name=Msa0996380 |
| chr6_4 | mRNA | 74537065 | 74544315 | 74537065 | ID=Msa0996380-mRNA-1;Parent=Msa0996380;Name=Msa0996380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=354|1|0.33|1|1|1|3|0|361 |
| chr6_4 | exon | 74537065 | 74537649 | 74537065 | ID=Msa0996380-mRNA-1:exon:13940;Parent=Msa0996380-mRNA-1 |
| chr6_4 | exon | 74542631 | 74542999 | 74542631 | ID=Msa0996380-mRNA-1:exon:13941;Parent=Msa0996380-mRNA-1 |
| chr6_4 | exon | 74543830 | 74544315 | 74543830 | ID=Msa0996380-mRNA-1:exon:13942;Parent=Msa0996380-mRNA-1 |
| chr6_4 | five_prime_UTR | 74537065 | 74537418 | 74537065 | ID=Msa0996380-mRNA-1:five_prime_utr;Parent=Msa0996380-mRNA-1 |
| chr6_4 | CDS | 74537419 | 74537649 | 74537419 | ID=Msa0996380-mRNA-1:cds;Parent=Msa0996380-mRNA-1 |
| chr6_4 | CDS | 74542631 | 74542999 | 74542631 | ID=Msa0996380-mRNA-1:cds;Parent=Msa0996380-mRNA-1 |
| chr6_4 | CDS | 74543830 | 74544315 | 74543830 | ID=Msa0996380-mRNA-1:cds;Parent=Msa0996380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
