Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896530 | XP_003620328.1 | 97.238 | 362 | 9 | 1 | 1 | 361 | 1 | 362 | 0.0 | 741 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896530 | sp|P0C042|Y4597_ARATH | 50.896 | 279 | 126 | 4 | 83 | 360 | 41 | 309 | 9.27e-93 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896530 | G7KM25 | 97.238 | 362 | 9 | 1 | 1 | 361 | 1 | 362 | 0.0 | 741 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041840 | Msa0896530 | 0.811685 | 6.186354e-51 | -8.615850e-47 |
| Msa0094710 | Msa0896530 | 0.810573 | 1.077651e-50 | -8.615850e-47 |
| Msa0101960 | Msa0896530 | 0.800072 | 1.710649e-48 | -8.615850e-47 |
| Msa0613420 | Msa0896530 | 0.805839 | 1.099547e-49 | -8.615850e-47 |
| Msa0641130 | Msa0896530 | 0.852675 | 3.950554e-61 | -8.615850e-47 |
| Msa0734940 | Msa0896530 | 0.815448 | 9.199415e-52 | -8.615850e-47 |
| Msa0152560 | Msa0896530 | 0.814359 | 1.603544e-51 | -8.615850e-47 |
| Msa0179140 | Msa0896530 | 0.807241 | 5.563544e-50 | -8.615850e-47 |
| Msa0388730 | Msa0896530 | 0.813201 | 2.885511e-51 | -8.615850e-47 |
| Msa0431900 | Msa0896530 | 0.814556 | 1.450666e-51 | -8.615850e-47 |
| Msa0264680 | Msa0896530 | 0.808767 | 2.634904e-50 | -8.615850e-47 |
| Msa0302730 | Msa0896530 | 0.826505 | 2.615452e-54 | -8.615850e-47 |
| Msa0306610 | Msa0896530 | 0.802281 | 6.044229e-49 | -8.615850e-47 |
| Msa0319240 | Msa0896530 | 0.830186 | 3.384805e-55 | -8.615850e-47 |
| Msa0355550 | Msa0896530 | 0.815218 | 1.034489e-51 | -8.615850e-47 |
| Msa0484800 | Msa0896530 | 0.814223 | 1.719049e-51 | -8.615850e-47 |
| Msa0520770 | Msa0896530 | 0.816387 | 5.675805e-52 | -8.615850e-47 |
| Msa0545050 | Msa0896530 | 0.852499 | 4.436253e-61 | -8.615850e-47 |
| Msa0573890 | Msa0896530 | 0.823379 | 1.429805e-53 | -8.615850e-47 |
| Msa0600590 | Msa0896530 | 0.850425 | 1.712600e-60 | -8.615850e-47 |
| Msa0896530 | Msa0923070 | 0.807803 | 4.228483e-50 | -8.615850e-47 |
| Msa0896530 | Msa0996380 | 0.860702 | 1.718532e-63 | -8.615850e-47 |
| Msa0896530 | Msa1008390 | 0.814198 | 1.741120e-51 | -8.615850e-47 |
| Msa0896530 | Msa1011250 | 0.812513 | 4.081735e-51 | -8.615850e-47 |
| Msa0896530 | Msa1023310 | 0.824272 | 8.831616e-54 | -8.615850e-47 |
| Msa0896530 | Msa1038880 | 0.806630 | 7.493949e-50 | -8.615850e-47 |
| Msa0896530 | Msa1062040 | 0.801286 | 9.674272e-49 | -8.615850e-47 |
| Msa0896530 | Msa1069890 | 0.815231 | 1.028033e-51 | -8.615850e-47 |
| Msa0896530 | Msa1107200 | 0.825105 | 5.618099e-54 | -8.615850e-47 |
| Msa0896530 | Msa1140630 | 0.819624 | 1.053259e-52 | -8.615850e-47 |
| Msa0896530 | Msa1150780 | 0.810311 | 1.227594e-50 | -8.615850e-47 |
| Msa0896530 | Msa1160560 | 0.814214 | 1.726527e-51 | -8.615850e-47 |
| Msa0896530 | Msa1168640 | 0.800333 | 1.513829e-48 | -8.615850e-47 |
| Msa0896530 | Msa1180720 | 0.801159 | 1.026911e-48 | -8.615850e-47 |
| Msa0896530 | Msa1208990 | 0.815365 | 9.595558e-52 | -8.615850e-47 |
| Msa0896530 | Msa1225580 | 0.821161 | 4.676921e-53 | -8.615850e-47 |
| Msa0896530 | Msa1231710 | 0.803782 | 2.958146e-49 | -8.615850e-47 |
| Msa0896530 | Msa1256060 | 0.831016 | 2.120158e-55 | -8.615850e-47 |
| Msa0896530 | Msa1312440 | 0.821432 | 4.049519e-53 | -8.615850e-47 |
| Msa0896530 | Msa1355510 | 0.809663 | 1.692570e-50 | -8.615850e-47 |
| Msa0896530 | Msa1368610 | 0.815653 | 8.278043e-52 | -8.615850e-47 |
| Msa0896530 | Msa1419840 | 0.812827 | 3.484413e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896530 | MtrunA17_Chr6g0481291 | 97.238 | 362 | 9 | 1 | 1 | 361 | 1 | 362 | 0.0 | 741 |
| Msa0896530 | MtrunA17_Chr1g0162921 | 51.807 | 332 | 151 | 3 | 36 | 360 | 47 | 376 | 4.08e-127 | 370 |
| Msa0896530 | MtrunA17_Chr1g0210841 | 56.944 | 288 | 120 | 2 | 73 | 360 | 64 | 347 | 3.94e-125 | 364 |
| Msa0896530 | MtrunA17_Chr1g0168191 | 42.088 | 297 | 157 | 6 | 78 | 361 | 58 | 352 | 2.50e-70 | 224 |
| Msa0896530 | MtrunA17_Chr8g0335991 | 38.576 | 337 | 177 | 8 | 48 | 357 | 20 | 353 | 2.74e-68 | 218 |
| Msa0896530 | MtrunA17_Chr7g0225581 | 33.088 | 272 | 176 | 5 | 93 | 360 | 1 | 270 | 1.13e-48 | 165 |
| Msa0896530 | MtrunA17_Chr7g0225571 | 32.482 | 274 | 174 | 7 | 93 | 360 | 1 | 269 | 8.11e-45 | 155 |
| Msa0896530 | MtrunA17_Chr8g0336021 | 42.143 | 140 | 79 | 1 | 205 | 342 | 1 | 140 | 5.04e-33 | 120 |
| Msa0896530 | MtrunA17_Chr8g0336001 | 38.272 | 162 | 98 | 1 | 201 | 360 | 3 | 164 | 8.56e-32 | 117 |
| Msa0896530 | MtrunA17_Chr8g0336011 | 38.554 | 166 | 86 | 5 | 50 | 200 | 22 | 186 | 8.06e-26 | 102 |
| Msa0896530 | MtrunA17_Chr8g0336031 | 39.844 | 128 | 69 | 3 | 80 | 200 | 57 | 183 | 2.50e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896530 | AT1G14590.1 | 48.732 | 355 | 169 | 5 | 7 | 360 | 18 | 360 | 6.68e-124 | 362 |
| Msa0896530 | AT2G02061.2 | 57.609 | 276 | 115 | 2 | 87 | 361 | 111 | 385 | 4.29e-120 | 353 |
| Msa0896530 | AT2G02061.1 | 57.455 | 275 | 115 | 2 | 87 | 360 | 111 | 384 | 2.76e-119 | 351 |
| Msa0896530 | AT4G19975.1 | 50.148 | 337 | 150 | 4 | 33 | 360 | 26 | 353 | 1.73e-118 | 347 |
| Msa0896530 | AT5G44820.1 | 47.443 | 352 | 167 | 5 | 23 | 360 | 17 | 364 | 3.85e-115 | 339 |
| Msa0896530 | AT4G19970.1 | 43.363 | 339 | 176 | 6 | 34 | 360 | 41 | 375 | 2.87e-99 | 299 |
| Msa0896530 | AT4G15970.1 | 51.254 | 279 | 125 | 4 | 83 | 360 | 32 | 300 | 2.68e-94 | 285 |
| Msa0896530 | AT1G28700.1 | 38.079 | 302 | 169 | 6 | 67 | 361 | 36 | 326 | 1.74e-61 | 201 |
| Msa0896530 | AT1G28695.1 | 39.427 | 279 | 158 | 5 | 69 | 341 | 30 | 303 | 2.96e-60 | 197 |
| Msa0896530 | AT1G28710.1 | 37.671 | 292 | 169 | 6 | 59 | 341 | 27 | 314 | 8.53e-59 | 194 |
| Msa0896530 | AT1G28710.4 | 37.671 | 292 | 169 | 6 | 59 | 341 | 27 | 314 | 8.53e-59 | 194 |
| Msa0896530 | AT1G28710.3 | 37.671 | 292 | 169 | 6 | 59 | 341 | 27 | 314 | 8.53e-59 | 194 |
| Msa0896530 | AT5G40900.1 | 34.615 | 286 | 159 | 7 | 84 | 361 | 57 | 322 | 3.27e-46 | 160 |
Find 54 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTGGTTCTACAAATTT+TGG | 0.154896 | 6_1:+86710227 | Msa0896530:CDS |
| AAGCTTCTTATTTGTAATTA+AGG | 0.172101 | 6_1:-86710317 | None:intergenic |
| TGAAATAATCACAAGCAATT+TGG | 0.182799 | 6_1:-86710135 | None:intergenic |
| TTCTTAAGCACAAGCTATTT+TGG | 0.185065 | 6_1:+86710349 | Msa0896530:CDS |
| AACAATTCTGCTTCTCCTTT+TGG | 0.199551 | 6_1:+86703747 | Msa0896530:CDS |
| TCTTGGTGCTGTTCTTCATT+TGG | 0.209687 | 6_1:+86709239 | Msa0896530:CDS |
| TGTCAATCTAGCAAGGATTT+TGG | 0.246249 | 6_1:+86710379 | Msa0896530:CDS |
| CTTGGTGCTGTTCTTCATTT+GGG | 0.259335 | 6_1:+86709240 | Msa0896530:CDS |
| TTGTAGAACCAAATTGTTCT+TGG | 0.269685 | 6_1:-86710220 | None:intergenic |
| AATCAAATCCAAGAACAATT+TGG | 0.309827 | 6_1:+86710212 | Msa0896530:CDS |
| AGCTTCTTATTTGTAATTAA+GGG | 0.327364 | 6_1:-86710316 | None:intergenic |
| ATTGCTTGTGATTATTTCAA+TGG | 0.335617 | 6_1:+86710139 | Msa0896530:CDS |
| TGGAGAAGAATTGAATTTCT+TGG | 0.355189 | 6_1:+86709222 | Msa0896530:CDS |
| CAAATAAGAAGCTTAAGATT+AGG | 0.357408 | 6_1:+86710326 | Msa0896530:CDS |
| TGGATAGTTGTGCATGTCAT+AGG | 0.363415 | 6_1:-86710167 | None:intergenic |
| TTAAGAACACTCTTTAGCTT+TGG | 0.370284 | 6_1:-86708925 | None:intergenic |
| CCATGACTTGTTCCCTTCTC+CGG | 0.386963 | 6_1:-86703628 | None:intergenic |
| TGCTAATTGTTGTGTTGGCT+TGG | 0.407831 | 6_1:+86710420 | Msa0896530:CDS |
| ACATATGTGAATCCTCCATT+TGG | 0.413713 | 6_1:-86710187 | None:intergenic |
| GGGATATAGCTTTGTGTTCA+CGG | 0.424554 | 6_1:+86709260 | Msa0896530:CDS |
| AACAAGTCATGGAAGTCAAT+TGG | 0.426656 | 6_1:+86703639 | Msa0896530:CDS |
| TGAGGATTGGAAGAAGTATA+TGG | 0.432395 | 6_1:+86710474 | Msa0896530:CDS |
| TCTTTGTAAAATTGTTTGAA+TGG | 0.440475 | 6_1:-86710103 | None:intergenic |
| TCATGGAAGTCAATTGGAAC+AGG | 0.450424 | 6_1:+86703645 | Msa0896530:CDS |
| TGTTATCAACTTCAAACTAA+AGG | 0.454059 | 6_1:+86709144 | Msa0896530:CDS |
| AAGTAATGTGAGATAGTAGC+AGG | 0.464851 | 6_1:-86703774 | None:intergenic |
| ACATCTTGATCATGCATAGT+TGG | 0.467730 | 6_1:-86710271 | None:intergenic |
| ATAGTAGCAGGAAGACCAAA+AGG | 0.473505 | 6_1:-86703762 | None:intergenic |
| ACTATCTCACATTACTTCAA+TGG | 0.475598 | 6_1:+86703780 | Msa0896530:CDS |
| GTCGACAACGTTGCCGGAGA+AGG | 0.482918 | 6_1:+86703615 | Msa0896530:CDS |
| TCTCCACATCATATGTAAGT+AGG | 0.491164 | 6_1:-86709205 | None:intergenic |
| GACATGCACAACTATCCAAA+TGG | 0.496279 | 6_1:+86710172 | Msa0896530:CDS |
| GGTGCCGTCGACAACGTTGC+CGG | 0.496623 | 6_1:+86703609 | Msa0896530:CDS |
| CCGGAGAAGGGAACAAGTCA+TGG | 0.519589 | 6_1:+86703628 | Msa0896530:CDS |
| CACATCATATGTAAGTAGGT+TGG | 0.519993 | 6_1:-86709201 | None:intergenic |
| ATGCATGCTAATTGTTGTGT+TGG | 0.526017 | 6_1:+86710415 | Msa0896530:CDS |
| TCTTAAACAAGCATCAATGA+AGG | 0.526752 | 6_1:+86708942 | Msa0896530:CDS |
| AATTGATCAAATATTGAACC+TGG | 0.540784 | 6_1:-86709009 | None:intergenic |
| TCGACAACGTTGCCGGAGAA+GGG | 0.550988 | 6_1:+86703616 | Msa0896530:CDS |
| AAGAATCATTATGCTGCTGC+TGG | 0.552708 | 6_1:+86703588 | Msa0896530:CDS |
| TTCTCCGGCAACGTTGTCGA+CGG | 0.559557 | 6_1:-86703613 | None:intergenic |
| TCACCACATTGAATGATGCA+TGG | 0.575011 | 6_1:+86708980 | Msa0896530:CDS |
| ATCACCTTGTGGTAATAACA+TGG | 0.579094 | 6_1:+86709079 | Msa0896530:CDS |
| CACCACATTGAATGATGCAT+GGG | 0.590967 | 6_1:+86708981 | Msa0896530:CDS |
| CAACCTACTTACATATGATG+TGG | 0.592371 | 6_1:+86709202 | Msa0896530:CDS |
| CTTAAACAAGCATCAATGAA+GGG | 0.599814 | 6_1:+86708943 | Msa0896530:CDS |
| AATGATGCATGGGCTGAACC+AGG | 0.607742 | 6_1:+86708991 | Msa0896530:CDS |
| TTGTGTTGGCTTGGAGAACA+AGG | 0.616497 | 6_1:+86710429 | Msa0896530:CDS |
| GGTCCCATGTTATTACCACA+AGG | 0.634590 | 6_1:-86709083 | None:intergenic |
| TGCAGGACACTGATATAATG+TGG | 0.636069 | 6_1:+86710071 | Msa0896530:intron |
| TCACCTTGTGGTAATAACAT+GGG | 0.656323 | 6_1:+86709080 | Msa0896530:CDS |
| ATGCACAACTATCCAAATGG+AGG | 0.677945 | 6_1:+86710175 | Msa0896530:CDS |
| AAAGCTATTAGATCACCTTG+TGG | 0.716909 | 6_1:+86709068 | Msa0896530:CDS |
| AGCCCATGCATCATTCAATG+TGG | 0.718468 | 6_1:-86708983 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAAATAAATTTTATAT+TGG | - | chr6_1:86706237-86706256 | None:intergenic | 0.0% |
| !!! | TATTTTCTCAATTTTAATTT+TGG | + | chr6_1:86704735-86704754 | Msa0896530:intron | 10.0% |
| !!! | TATTTTATGTAAAAAAATTG+AGG | + | chr6_1:86706564-86706583 | Msa0896530:intron | 10.0% |
| !!! | ATTTTATGTAAAAAAATTGA+GGG | + | chr6_1:86706565-86706584 | Msa0896530:intron | 10.0% |
| !! | CATCAAAATAAAATAAAAAT+TGG | + | chr6_1:86706678-86706697 | Msa0896530:intron | 10.0% |
| !!! | AGTTTTTAATAATATTTTAG+AGG | - | chr6_1:86707095-86707114 | None:intergenic | 10.0% |
| !!! | TAGTTTTAATTTGTTTTTAT+AGG | + | chr6_1:86707153-86707172 | Msa0896530:intron | 10.0% |
| !!! | TTTTTCATGATATTATTTAT+TGG | + | chr6_1:86707390-86707409 | Msa0896530:intron | 10.0% |
| !!! | ATTTTTGATATATAATATAG+TGG | + | chr6_1:86707843-86707862 | Msa0896530:intron | 10.0% |
| !!! | TTTTTGATATATAATATAGT+GGG | + | chr6_1:86707844-86707863 | Msa0896530:intron | 10.0% |
| !! | TGATTTACAATTATAATTCT+GGG | + | chr6_1:86703915-86703934 | Msa0896530:intron | 15.0% |
| !!! | ATCAAAAAGTTGATTTTTTT+TGG | + | chr6_1:86703962-86703981 | Msa0896530:intron | 15.0% |
| !!! | TCAAAAAGTTGATTTTTTTT+GGG | + | chr6_1:86703963-86703982 | Msa0896530:intron | 15.0% |
| !!! | AAAAAATTCAACTTTTTGAA+TGG | - | chr6_1:86704013-86704032 | None:intergenic | 15.0% |
| !!! | TTAATTTTGTGTTATTTTTG+TGG | + | chr6_1:86704031-86704050 | Msa0896530:intron | 15.0% |
| !!! | AAGAAATTCAACTTTTTAAT+TGG | - | chr6_1:86704059-86704078 | None:intergenic | 15.0% |
| !!! | TCAATTTTAATTTTGGATTT+TGG | + | chr6_1:86704742-86704761 | Msa0896530:intron | 15.0% |
| !! | TTCAAGGAATATTATAAAAA+TGG | - | chr6_1:86704816-86704835 | None:intergenic | 15.0% |
| !!! | TAAAATAGTTTTAGTGAAAA+AGG | + | chr6_1:86704979-86704998 | Msa0896530:intron | 15.0% |
| !! | AATTAATGTTGTGATAATTT+AGG | - | chr6_1:86705175-86705194 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTAAGAATCATG+GGG | - | chr6_1:86706321-86706340 | None:intergenic | 15.0% |
| !!! | GTTTTATTTTTAAGAATCAT+GGG | - | chr6_1:86706322-86706341 | None:intergenic | 15.0% |
| !!! | TGTTTTATTTTTAAGAATCA+TGG | - | chr6_1:86706323-86706342 | None:intergenic | 15.0% |
| !!! | ATCAATTACAAACAAAATTT+TGG | + | chr6_1:86706467-86706486 | Msa0896530:intron | 15.0% |
| !!! | GCATATTTACATTTTTTTTA+AGG | + | chr6_1:86707207-86707226 | Msa0896530:intron | 15.0% |
| !! | ATATCATATTCGTATTAATT+AGG | - | chr6_1:86708141-86708160 | None:intergenic | 15.0% |
| !!! | TTTCAAATCAGAATAAATTT+TGG | + | chr6_1:86708629-86708648 | Msa0896530:intron | 15.0% |
| !!! | TTTTAGAAAAAGTTATGAAT+TGG | - | chr6_1:86708749-86708768 | None:intergenic | 15.0% |
| !! | ATATAGAGAAAATTAAGATT+GGG | + | chr6_1:86709336-86709355 | Msa0896530:intron | 15.0% |
| !!! | ATAAGTTTTGATATATCTAT+AGG | + | chr6_1:86709724-86709743 | Msa0896530:intron | 15.0% |
| !! | AAAATAGTTGAAAAAACTTA+GGG | - | chr6_1:86709866-86709885 | None:intergenic | 15.0% |
| !! | AAAAATAGTTGAAAAAACTT+AGG | - | chr6_1:86709867-86709886 | None:intergenic | 15.0% |
| !! | GTGATTTACAATTATAATTC+TGG | + | chr6_1:86703914-86703933 | Msa0896530:intron | 20.0% |
| !! | TTGATTGATCAATAAAAAGA+AGG | + | chr6_1:86704447-86704466 | Msa0896530:intron | 20.0% |
| !! | TGATAAAATTGAAGAGAAAT+TGG | + | chr6_1:86704529-86704548 | Msa0896530:intron | 20.0% |
| !! | AAAAAATATCAATTGATGCA+GGG | - | chr6_1:86705498-86705517 | None:intergenic | 20.0% |
| !! | AAACAAGAGTTCATATTATA+AGG | - | chr6_1:86705953-86705972 | None:intergenic | 20.0% |
| !!! | TATAATATGAACTCTTGTTT+AGG | + | chr6_1:86705953-86705972 | Msa0896530:intron | 20.0% |
| !!! | ATAATATGAACTCTTGTTTA+GGG | + | chr6_1:86705954-86705973 | Msa0896530:intron | 20.0% |
| !!! | ATTACAAACAAAATTTTGGA+AGG | + | chr6_1:86706471-86706490 | Msa0896530:intron | 20.0% |
| !! | TCAGATAAGTATATATGAAA+AGG | - | chr6_1:86706633-86706652 | None:intergenic | 20.0% |
| !!! | AAATTATTTAAAATGACCTG+TGG | + | chr6_1:86706887-86706906 | Msa0896530:intron | 20.0% |
| !! | AATATCATGAAAAAACAATG+TGG | - | chr6_1:86707384-86707403 | None:intergenic | 20.0% |
| !! | TTCATCTATGTCAATAAAAT+TGG | - | chr6_1:86707441-86707460 | None:intergenic | 20.0% |
| !! | ATAGATGAAAATAATTGTGT+TGG | + | chr6_1:86707452-86707471 | Msa0896530:intron | 20.0% |
| !!! | TCATTTATTACCCTTTTAAT+CGG | - | chr6_1:86707681-86707700 | None:intergenic | 20.0% |
| !!! | TAAATGAATTCTTAAGTTGT+TGG | + | chr6_1:86707694-86707713 | Msa0896530:intron | 20.0% |
| !! | ACCATAAAATTAACTATAGA+AGG | + | chr6_1:86707745-86707764 | Msa0896530:intron | 20.0% |
| !!! | AATATCTTAATTGCACTTTT+TGG | + | chr6_1:86707769-86707788 | Msa0896530:intron | 20.0% |
| !! | CTATATATAGAAATATAGAG+TGG | - | chr6_1:86707964-86707983 | None:intergenic | 20.0% |
| !!! | CACTCTATATTTCTATATAT+AGG | + | chr6_1:86707962-86707981 | Msa0896530:intron | 20.0% |
| !! | ATTTCTATATATAGGATCAT+AGG | + | chr6_1:86707970-86707989 | Msa0896530:intron | 20.0% |
| !!! | AATTGTACATGATTTTTAAG+TGG | - | chr6_1:86708026-86708045 | None:intergenic | 20.0% |
| !!! | GTTTTTGATTTCAAATTTGA+TGG | + | chr6_1:86708161-86708180 | Msa0896530:intron | 20.0% |
| !!! | TTTTTGCTTTGTTTGATTAT+TGG | + | chr6_1:86708364-86708383 | Msa0896530:intron | 20.0% |
| !!! | TGTTTGATTATTGGTAATTT+AGG | + | chr6_1:86708373-86708392 | Msa0896530:intron | 20.0% |
| !!! | AACTTTTTCTAAAATCACAA+CGG | + | chr6_1:86708755-86708774 | Msa0896530:intron | 20.0% |
| !! | CATATAGAGAAAATTAAGAT+TGG | + | chr6_1:86709335-86709354 | Msa0896530:intron | 20.0% |
| !!! | TCATTTTCTCAAATTATTGT+CGG | - | chr6_1:86709491-86709510 | None:intergenic | 20.0% |
| !!! | AAATTTTAATGTGTCAATTG+TGG | - | chr6_1:86710016-86710035 | None:intergenic | 20.0% |
| !! | TCTTTGTAAAATTGTTTGAA+TGG | - | chr6_1:86710106-86710125 | None:intergenic | 20.0% |
| !!! | AGCTTCTTATTTGTAATTAA+GGG | - | chr6_1:86710319-86710338 | None:intergenic | 20.0% |
| !!! | AAGCTTCTTATTTGTAATTA+AGG | - | chr6_1:86710320-86710339 | None:intergenic | 20.0% |
| !!! | GTTGAATTTCTTGTTTTTGA+TGG | + | chr6_1:86704067-86704086 | Msa0896530:intron | 25.0% |
| !! | ATGATGATGTGTATAATAGT+AGG | + | chr6_1:86704366-86704385 | Msa0896530:intron | 25.0% |
| !! | GATAAGAAGATTCATTGATT+TGG | + | chr6_1:86704569-86704588 | Msa0896530:intron | 25.0% |
| !! | TGATTTGGAATGAGAAAATA+AGG | + | chr6_1:86704584-86704603 | Msa0896530:intron | 25.0% |
| !! | GATTTGGAATGAGAAAATAA+GGG | + | chr6_1:86704585-86704604 | Msa0896530:intron | 25.0% |
| ! | TATTCCTTGAAGTATAGAAT+TGG | + | chr6_1:86704825-86704844 | Msa0896530:intron | 25.0% |
| ! | TATACCAATTCTATACTTCA+AGG | - | chr6_1:86704832-86704851 | None:intergenic | 25.0% |
| !!! | AGTGAAAAAGGTATTAAAGA+AGG | + | chr6_1:86704991-86705010 | Msa0896530:intron | 25.0% |
| ! | TCAGACAAAAATCATATGAT+TGG | + | chr6_1:86705327-86705346 | Msa0896530:intron | 25.0% |
| !!! | AATTAAGGTTAAAAGTGTCA+CGG | - | chr6_1:86705363-86705382 | None:intergenic | 25.0% |
| !!! | AAAACTTTTTCACATTGTCA+TGG | + | chr6_1:86705418-86705437 | Msa0896530:intron | 25.0% |
| ! | GAAAAAATATCAATTGATGC+AGG | - | chr6_1:86705499-86705518 | None:intergenic | 25.0% |
| ! | GTTAATAGTTATGTATTACG+AGG | - | chr6_1:86705857-86705876 | None:intergenic | 25.0% |
| ! | AATTGAATAACATGTGTTAC+AGG | - | chr6_1:86706262-86706281 | None:intergenic | 25.0% |
| ! | ATTCATTATTCATGCATATG+TGG | + | chr6_1:86706279-86706298 | Msa0896530:intron | 25.0% |
| ! | TTCATTATTCATGCATATGT+GGG | + | chr6_1:86706280-86706299 | Msa0896530:intron | 25.0% |
| !! | AGTGTTCTTCTTTCTAATTT+TGG | + | chr6_1:86706393-86706412 | Msa0896530:intron | 25.0% |
| !! | GTGTTCTTCTTTCTAATTTT+GGG | + | chr6_1:86706394-86706413 | Msa0896530:intron | 25.0% |
| !! | TGGAAGGAAAAAAAAACTTT+TGG | + | chr6_1:86706487-86706506 | Msa0896530:intron | 25.0% |
| ! | TAAAATTCTGAGTTTGAATC+TGG | + | chr6_1:86706599-86706618 | Msa0896530:intron | 25.0% |
| ! | AAAATTCTGAGTTTGAATCT+GGG | + | chr6_1:86706600-86706619 | Msa0896530:intron | 25.0% |
| !!! | TTATTTTGATGTTAGTCTAG+TGG | - | chr6_1:86706669-86706688 | None:intergenic | 25.0% |
| !!! | CTGTTTTTTTCGTTTCAATT+AGG | + | chr6_1:86706769-86706788 | Msa0896530:intron | 25.0% |
| ! | AAATGTAAATATGCAAGTTG+AGG | - | chr6_1:86707201-86707220 | None:intergenic | 25.0% |
| ! | AAATTATATATGTTAGCACG+TGG | - | chr6_1:86707268-86707287 | None:intergenic | 25.0% |
| ! | TCAAAATTCCTACTTAAATG+AGG | - | chr6_1:86707500-86707519 | None:intergenic | 25.0% |
| !! | GATGTATTTACCGATTAAAA+GGG | + | chr6_1:86707668-86707687 | Msa0896530:intron | 25.0% |
| !! | GCCTTCTATAGTTAATTTTA+TGG | - | chr6_1:86707749-86707768 | None:intergenic | 25.0% |
| !! | GATATATAATATAGTGGGAA+AGG | + | chr6_1:86707849-86707868 | Msa0896530:intron | 25.0% |
| !! | ATAAAGGGATATATTTTCCT+TGG | + | chr6_1:86707873-86707892 | Msa0896530:intron | 25.0% |
| ! | CATTTACTTATATACACAAG+TGG | - | chr6_1:86708072-86708091 | None:intergenic | 25.0% |
| ! | CACTTGTGTATATAAGTAAA+TGG | + | chr6_1:86708070-86708089 | Msa0896530:intron | 25.0% |
| ! | TTGTGTATATAAGTAAATGG+AGG | + | chr6_1:86708073-86708092 | Msa0896530:intron | 25.0% |
| ! | TGTGTATATAAGTAAATGGA+GGG | + | chr6_1:86708074-86708093 | Msa0896530:intron | 25.0% |
| !! | TTTTGCACATCTTTTCTTTT+TGG | + | chr6_1:86708196-86708215 | Msa0896530:intron | 25.0% |
| ! | AAATTCATGACACCAAAAAA+TGG | - | chr6_1:86708243-86708262 | None:intergenic | 25.0% |
| !!! | AGAATCTAGTTGCTATTTTT+TGG | + | chr6_1:86708301-86708320 | Msa0896530:intron | 25.0% |
| !! | TGATTATTGGTAATTTAGGT+TGG | + | chr6_1:86708377-86708396 | Msa0896530:intron | 25.0% |
| ! | TGATGCATAAAAAATTGTGA+TGG | + | chr6_1:86708414-86708433 | Msa0896530:intron | 25.0% |
| ! | AATTGATCAAATATTGAACC+TGG | - | chr6_1:86709012-86709031 | None:intergenic | 25.0% |
| !! | TTTCTTGAGAGTTTTCAAAT+TGG | + | chr6_1:86709030-86709049 | Msa0896530:CDS | 25.0% |
| ! | TGTTATCAACTTCAAACTAA+AGG | + | chr6_1:86709144-86709163 | Msa0896530:CDS | 25.0% |
| ! | ATTCATAGTTACTTGTGTAA+GGG | + | chr6_1:86709359-86709378 | Msa0896530:intron | 25.0% |
| !! | TCTCCAAGTTTTTCATTATA+AGG | + | chr6_1:86709411-86709430 | Msa0896530:intron | 25.0% |
| !! | CTCCAAGTTTTTCATTATAA+GGG | + | chr6_1:86709412-86709431 | Msa0896530:intron | 25.0% |
| !! | TCCAAGTTTTTCATTATAAG+GGG | + | chr6_1:86709413-86709432 | Msa0896530:intron | 25.0% |
| !!! | TTTGATTATCTTTTGAAGCA+CGG | + | chr6_1:86709451-86709470 | Msa0896530:intron | 25.0% |
| ! | TTCAATGTAATCATATGTGT+CGG | + | chr6_1:86709516-86709535 | Msa0896530:intron | 25.0% |
| ! | TTCAATGTAATCATATGTGT+CGG | + | chr6_1:86709516-86709535 | Msa0896530:intron | 25.0% |
| !!! | ATTTTGTTTTTTTCCTTTGC+AGG | + | chr6_1:86710054-86710073 | Msa0896530:intron | 25.0% |
| ! | TGAAATAATCACAAGCAATT+TGG | - | chr6_1:86710138-86710157 | None:intergenic | 25.0% |
| ! | ATTGCTTGTGATTATTTCAA+TGG | + | chr6_1:86710139-86710158 | Msa0896530:CDS | 25.0% |
| ! | AATCAAATCCAAGAACAATT+TGG | + | chr6_1:86710212-86710231 | Msa0896530:CDS | 25.0% |
| !!! | CAATTTGGTTCTACAAATTT+TGG | + | chr6_1:86710227-86710246 | Msa0896530:CDS | 25.0% |
| ! | CAAATAAGAAGCTTAAGATT+AGG | + | chr6_1:86710326-86710345 | Msa0896530:CDS | 25.0% |
| ACTATCTCACATTACTTCAA+TGG | + | chr6_1:86703780-86703799 | Msa0896530:CDS | 30.0% | |
| !! | GGTTTTGTGTATGATTTTGT+GGG | + | chr6_1:86703936-86703955 | Msa0896530:intron | 30.0% |
| !! | TTGACTTGGAGAATCAAAAT+TGG | - | chr6_1:86704126-86704145 | None:intergenic | 30.0% |
| ! | TTTTCTGTTCATGTTTGACT+TGG | - | chr6_1:86704140-86704159 | None:intergenic | 30.0% |
| !!! | TGCCTATTTTGTTTTTTGAG+TGG | + | chr6_1:86704286-86704305 | Msa0896530:intron | 30.0% |
| CTCCACTCAAAAAACAAAAT+AGG | - | chr6_1:86704291-86704310 | None:intergenic | 30.0% | |
| ACACATCATCATCACTATTT+AGG | - | chr6_1:86704358-86704377 | None:intergenic | 30.0% | |
| ! | AATAAGGGCTAGTAGAAAAT+AGG | + | chr6_1:86704600-86704619 | Msa0896530:intron | 30.0% |
| TAGTAGAAAATAGGTACTAG+TGG | + | chr6_1:86704609-86704628 | Msa0896530:intron | 30.0% | |
| ! | AAAAGATTACGTTTGCTGAT+TGG | + | chr6_1:86704667-86704686 | Msa0896530:intron | 30.0% |
| ! | AAAGATTACGTTTGCTGATT+GGG | + | chr6_1:86704668-86704687 | Msa0896530:intron | 30.0% |
| AATCATAAGCAAGTTGTGAT+TGG | + | chr6_1:86704919-86704938 | Msa0896530:intron | 30.0% | |
| !! | GAAAAAGGTATTAAAGAAGG+AGG | + | chr6_1:86704994-86705013 | Msa0896530:intron | 30.0% |
| ! | AACATGGATGTTCACATTTT+AGG | - | chr6_1:86705559-86705578 | None:intergenic | 30.0% |
| !!! | ACTATGTGTGTGTTTTAACA+TGG | - | chr6_1:86705575-86705594 | None:intergenic | 30.0% |
| ATCTAACTTAGCCTAACAAT+CGG | + | chr6_1:86705665-86705684 | Msa0896530:intron | 30.0% | |
| TCATTATTCATGCATATGTG+GGG | + | chr6_1:86706281-86706300 | Msa0896530:intron | 30.0% | |
| TTTAAGAATCATGGGGATTT+AGG | - | chr6_1:86706314-86706333 | None:intergenic | 30.0% | |
| CAGTATAAAAGTCATTCATG+TGG | + | chr6_1:86706820-86706839 | Msa0896530:intron | 30.0% | |
| !!! | TGGACCACATGTTATTTTAT+TGG | + | chr6_1:86706840-86706859 | Msa0896530:intron | 30.0% |
| GTCACCAATAAAATAACATG+TGG | - | chr6_1:86706847-86706866 | None:intergenic | 30.0% | |
| AACTTAAATCACAAAACCAC+AGG | - | chr6_1:86706906-86706925 | None:intergenic | 30.0% | |
| TTGCATGTTTGTGACAATAT+TGG | + | chr6_1:86707238-86707257 | Msa0896530:intron | 30.0% | |
| CATGAAAAAACAATGTGGAT+TGG | - | chr6_1:86707379-86707398 | None:intergenic | 30.0% | |
| GTCAACACATAAATGATTGT+TGG | + | chr6_1:86707554-86707573 | Msa0896530:intron | 30.0% | |
| ATGTTCGTTGAATCGAAATT+AGG | - | chr6_1:86707647-86707666 | None:intergenic | 30.0% | |
| ! | CGATGTATTTACCGATTAAA+AGG | + | chr6_1:86707667-86707686 | Msa0896530:intron | 30.0% |
| AAAAAGGGTTGTAGACATTA+TGG | - | chr6_1:86707822-86707841 | None:intergenic | 30.0% | |
| ! | ATATAGTGGGAAAGGAATAA+AGG | + | chr6_1:86707857-86707876 | Msa0896530:intron | 30.0% |
| ! | TATAGTGGGAAAGGAATAAA+GGG | + | chr6_1:86707858-86707877 | Msa0896530:intron | 30.0% |
| CAAAGAATAATATCCTACCA+AGG | - | chr6_1:86707893-86707912 | None:intergenic | 30.0% | |
| TGGTAGGATATTATTCTTTG+AGG | + | chr6_1:86707893-86707912 | Msa0896530:intron | 30.0% | |
| !! | AGGATATTATTCTTTGAGGT+TGG | + | chr6_1:86707897-86707916 | Msa0896530:intron | 30.0% |
| ACACTATATCACCATTATTG+AGG | - | chr6_1:86707926-86707945 | None:intergenic | 30.0% | |
| GTGTATATAAGTAAATGGAG+GGG | + | chr6_1:86708075-86708094 | Msa0896530:intron | 30.0% | |
| TGTATATAAGTAAATGGAGG+GGG | + | chr6_1:86708076-86708095 | Msa0896530:intron | 30.0% | |
| AACATACAATGAACACAAGA+TGG | - | chr6_1:86708107-86708126 | None:intergenic | 30.0% | |
| CCAAAAAATGGTTAGGATTT+AGG | - | chr6_1:86708231-86708250 | None:intergenic | 30.0% | |
| !!! | CCTAAATCCTAACCATTTTT+TGG | + | chr6_1:86708228-86708247 | Msa0896530:intron | 30.0% |
| !!! | TAGTTGCTATTTTTTGGTGT+AGG | + | chr6_1:86708307-86708326 | Msa0896530:intron | 30.0% |
| !!! | CTTTAGTTTTACTTCACCAT+TGG | + | chr6_1:86708447-86708466 | Msa0896530:intron | 30.0% |
| ATTTGAATTAGCGTTGTGTT+TGG | - | chr6_1:86708796-86708815 | None:intergenic | 30.0% | |
| GTCTTGTATGTTTATGTAAC+AGG | + | chr6_1:86708891-86708910 | Msa0896530:intron | 30.0% | |
| ! | TTAAGAACACTCTTTAGCTT+TGG | - | chr6_1:86708928-86708947 | None:intergenic | 30.0% |
| TCTTAAACAAGCATCAATGA+AGG | + | chr6_1:86708942-86708961 | Msa0896530:CDS | 30.0% | |
| CTTAAACAAGCATCAATGAA+GGG | + | chr6_1:86708943-86708962 | Msa0896530:CDS | 30.0% | |
| ! | TTGAGAGTTTTCAAATTGGT+GGG | + | chr6_1:86709034-86709053 | Msa0896530:CDS | 30.0% |
| ! | GATCTAATAGCTTTTGTGTT+TGG | - | chr6_1:86709062-86709081 | None:intergenic | 30.0% |
| AGTCATGAAAAAAGCTTCAT+CGG | - | chr6_1:86709181-86709200 | None:intergenic | 30.0% | |
| TGGAGAAGAATTGAATTTCT+TGG | + | chr6_1:86709222-86709241 | Msa0896530:CDS | 30.0% | |
| GATTCATAGTTACTTGTGTA+AGG | + | chr6_1:86709358-86709377 | Msa0896530:intron | 30.0% | |
| TTCATAGTTACTTGTGTAAG+GGG | + | chr6_1:86709360-86709379 | Msa0896530:intron | 30.0% | |
| ACCCCTTATAATGAAAAACT+TGG | - | chr6_1:86709417-86709436 | None:intergenic | 30.0% | |
| TTGTGCTTCATAGTTTATGT+AGG | + | chr6_1:86709680-86709699 | Msa0896530:intron | 30.0% | |
| TCATAGTTTATGTAGGTGTT+TGG | + | chr6_1:86709687-86709706 | Msa0896530:intron | 30.0% | |
| GCTGATTATCTACACATAAA+AGG | - | chr6_1:86709771-86709790 | None:intergenic | 30.0% | |
| TTGAAGATCCTCTAAACAAT+TGG | - | chr6_1:86709961-86709980 | None:intergenic | 30.0% | |
| TTGTAGAACCAAATTGTTCT+TGG | - | chr6_1:86710223-86710242 | None:intergenic | 30.0% | |
| ! | TTCTTAAGCACAAGCTATTT+TGG | + | chr6_1:86710349-86710368 | Msa0896530:CDS | 30.0% |
| ! | TGATCTTAAGATTTTGCTTG+AGG | + | chr6_1:86710456-86710475 | Msa0896530:CDS | 30.0% |
| ! | TTAAGATTTTGCTTGAGGAT+TGG | + | chr6_1:86710461-86710480 | Msa0896530:CDS | 30.0% |
| ! | GAAGTTTTTCTCTTATCTTC+AGG | - | chr6_1:86710505-86710524 | None:intergenic | 30.0% |
| AACAAGTCATGGAAGTCAAT+TGG | + | chr6_1:86703639-86703658 | Msa0896530:CDS | 35.0% | |
| !! | AAGCCATGTTTTTGTGAAGA+GGG | + | chr6_1:86703668-86703687 | Msa0896530:CDS | 35.0% |
| TAACCCTCTTCACAAAAACA+TGG | - | chr6_1:86703674-86703693 | None:intergenic | 35.0% | |
| ! | AACAATTCTGCTTCTCCTTT+TGG | + | chr6_1:86703747-86703766 | Msa0896530:CDS | 35.0% |
| AAGTAATGTGAGATAGTAGC+AGG | - | chr6_1:86703777-86703796 | None:intergenic | 35.0% | |
| !! | GGGTTTTGTGTATGATTTTG+TGG | + | chr6_1:86703935-86703954 | Msa0896530:intron | 35.0% |
| !! | ACATCGTAAACCGATTTTGT+CGG | + | chr6_1:86704257-86704276 | Msa0896530:intron | 35.0% |
| CATCATCATCACTATTTAGG+TGG | - | chr6_1:86704355-86704374 | None:intergenic | 35.0% | |
| !!! | TCTTTTTCAGCAGACTCTTA+AGG | + | chr6_1:86704698-86704717 | Msa0896530:intron | 35.0% |
| !!! | CTTTTTCAGCAGACTCTTAA+GGG | + | chr6_1:86704699-86704718 | Msa0896530:intron | 35.0% |
| !! | TTTTTCAGCAGACTCTTAAG+GGG | + | chr6_1:86704700-86704719 | Msa0896530:intron | 35.0% |
| !! | TTTTGGATTTTGGCACCATT+CGG | + | chr6_1:86704752-86704771 | Msa0896530:intron | 35.0% |
| CACGCATAAAAGTCGTTTAA+TGG | - | chr6_1:86705105-86705124 | None:intergenic | 35.0% | |
| !! | TTTCTAGAATGTGGGGAAAT+GGG | - | chr6_1:86705533-86705552 | None:intergenic | 35.0% |
| !! | TTAGGAGGTTTCTAGAATGT+GGG | - | chr6_1:86705541-86705560 | None:intergenic | 35.0% |
| !! | TTTAGGAGGTTTCTAGAATG+TGG | - | chr6_1:86705542-86705561 | None:intergenic | 35.0% |
| ! | ATGGATGTTCACATTTTAGG+AGG | - | chr6_1:86705556-86705575 | None:intergenic | 35.0% |
| ATAGTATCCACATGGAGAAT+AGG | + | chr6_1:86705590-86705609 | Msa0896530:intron | 35.0% | |
| AATAGGAGATACATCAAGAG+AGG | + | chr6_1:86705607-86705626 | Msa0896530:intron | 35.0% | |
| !!! | TTCAAGACTCGTTGTTTTGA+AGG | - | chr6_1:86705634-86705653 | None:intergenic | 35.0% |
| ATGAGTTATGAGTTGCGTAT+CGG | + | chr6_1:86705775-86705794 | Msa0896530:intron | 35.0% | |
| TAGTTGTTTGAGTCGAGTTT+GGG | - | chr6_1:86705886-86705905 | None:intergenic | 35.0% | |
| TTAGTTGTTTGAGTCGAGTT+TGG | - | chr6_1:86705887-86705906 | None:intergenic | 35.0% | |
| GAACTAAAGACAACACTAAC+CGG | + | chr6_1:86705925-86705944 | Msa0896530:intron | 35.0% | |
| AACTAAAGACAACACTAACC+GGG | + | chr6_1:86705926-86705945 | Msa0896530:intron | 35.0% | |
| CAGAGCTTAACAAGTGAAAA+TGG | - | chr6_1:86706752-86706771 | None:intergenic | 35.0% | |
| GTCAACTCTTAGTCTACATT+GGG | - | chr6_1:86707328-86707347 | None:intergenic | 35.0% | |
| AGTCAACTCTTAGTCTACAT+TGG | - | chr6_1:86707329-86707348 | None:intergenic | 35.0% | |
| AATGTAGACTAAGAGTTGAC+TGG | + | chr6_1:86707328-86707347 | Msa0896530:intron | 35.0% | |
| CCTACTTAAATGAGGAAAGT+GGG | - | chr6_1:86707492-86707511 | None:intergenic | 35.0% | |
| TCCTACTTAAATGAGGAAAG+TGG | - | chr6_1:86707493-86707512 | None:intergenic | 35.0% | |
| GTTGTAGACATTATGGATCA+TGG | - | chr6_1:86707815-86707834 | None:intergenic | 35.0% | |
| ! | AGGGATATATTTTCCTTGGT+AGG | + | chr6_1:86707877-86707896 | Msa0896530:intron | 35.0% |
| ! | GATCATAGGTGAGATTTTGA+AGG | + | chr6_1:86707984-86708003 | Msa0896530:intron | 35.0% |
| ! | TTTTTACCCCAAATAGCCTT+AGG | + | chr6_1:86708044-86708063 | Msa0896530:intron | 35.0% |
| TACAATGAACACAAGATGGT+TGG | - | chr6_1:86708103-86708122 | None:intergenic | 35.0% | |
| CATGACACCAAAAAATGGTT+AGG | - | chr6_1:86708238-86708257 | None:intergenic | 35.0% | |
| AATAACCAAACACACACCAA+TGG | - | chr6_1:86708466-86708485 | None:intergenic | 35.0% | |
| TAGAATCCATGTTGCATGTT+TGG | + | chr6_1:86708671-86708690 | Msa0896530:intron | 35.0% | |
| TTGGAGCTTCAACAAAATCA+AGG | - | chr6_1:86708730-86708749 | None:intergenic | 35.0% | |
| ACAAGACATCATTAAGCACT+TGG | - | chr6_1:86708878-86708897 | None:intergenic | 35.0% | |
| ! | CTTGAGAGTTTTCAAATTGG+TGG | + | chr6_1:86709033-86709052 | Msa0896530:CDS | 35.0% |
| AAAGCTATTAGATCACCTTG+TGG | + | chr6_1:86709068-86709087 | Msa0896530:CDS | 35.0% | |
| ATCACCTTGTGGTAATAACA+TGG | + | chr6_1:86709079-86709098 | Msa0896530:CDS | 35.0% | |
| TCACCTTGTGGTAATAACAT+GGG | + | chr6_1:86709080-86709099 | Msa0896530:CDS | 35.0% | |
| CACATCATATGTAAGTAGGT+TGG | - | chr6_1:86709204-86709223 | None:intergenic | 35.0% | |
| CAACCTACTTACATATGATG+TGG | + | chr6_1:86709202-86709221 | Msa0896530:CDS | 35.0% | |
| TCTCCACATCATATGTAAGT+AGG | - | chr6_1:86709208-86709227 | None:intergenic | 35.0% | |
| CAAACACTCATCTTCGTATT+AGG | - | chr6_1:86709663-86709682 | None:intergenic | 35.0% | |
| ATTATATCAGTGTCCTGCAA+AGG | - | chr6_1:86710070-86710089 | None:intergenic | 35.0% | |
| ACATATGTGAATCCTCCATT+TGG | - | chr6_1:86710190-86710209 | None:intergenic | 35.0% | |
| ACATCTTGATCATGCATAGT+TGG | - | chr6_1:86710274-86710293 | None:intergenic | 35.0% | |
| !! | TTAAGCACAAGCTATTTTGG+AGG | + | chr6_1:86710352-86710371 | Msa0896530:CDS | 35.0% |
| !! | TAAGCACAAGCTATTTTGGA+GGG | + | chr6_1:86710353-86710372 | Msa0896530:CDS | 35.0% |
| ! | TGTCAATCTAGCAAGGATTT+TGG | + | chr6_1:86710379-86710398 | Msa0896530:CDS | 35.0% |
| ATGCATGCTAATTGTTGTGT+TGG | + | chr6_1:86710415-86710434 | Msa0896530:CDS | 35.0% | |
| ! | TGAGGATTGGAAGAAGTATA+TGG | + | chr6_1:86710474-86710493 | Msa0896530:CDS | 35.0% |
| AAGAATCATTATGCTGCTGC+TGG | + | chr6_1:86703588-86703607 | Msa0896530:CDS | 40.0% | |
| TCATGGAAGTCAATTGGAAC+AGG | + | chr6_1:86703645-86703664 | Msa0896530:CDS | 40.0% | |
| !! | GAAGCCATGTTTTTGTGAAG+AGG | + | chr6_1:86703667-86703686 | Msa0896530:CDS | 40.0% |
| !!! | TTGTTGCTTTTGCTGTGTTG+TGG | + | chr6_1:86703712-86703731 | Msa0896530:CDS | 40.0% |
| ATAGTAGCAGGAAGACCAAA+AGG | - | chr6_1:86703765-86703784 | None:intergenic | 40.0% | |
| !! | TGATGTCTGCTTTGTTGTTG+TGG | + | chr6_1:86704099-86704118 | Msa0896530:intron | 40.0% |
| !! | GATGTCTGCTTTGTTGTTGT+GGG | + | chr6_1:86704100-86704119 | Msa0896530:intron | 40.0% |
| !! | CATCGTAAACCGATTTTGTC+GGG | + | chr6_1:86704258-86704277 | Msa0896530:intron | 40.0% |
| ACTCAACACGTTGGAAACAA+CGG | - | chr6_1:86705461-86705480 | None:intergenic | 40.0% | |
| !! | TTCTAGAATGTGGGGAAATG+GGG | - | chr6_1:86705532-86705551 | None:intergenic | 40.0% |
| !! | GTTTCTAGAATGTGGGGAAA+TGG | - | chr6_1:86705534-86705553 | None:intergenic | 40.0% |
| !! | TAGGAGGTTTCTAGAATGTG+GGG | - | chr6_1:86705540-86705559 | None:intergenic | 40.0% |
| ACACACACATAGTATCCACA+TGG | + | chr6_1:86705582-86705601 | Msa0896530:intron | 40.0% | |
| TGTATCTCCTATTCTCCATG+TGG | - | chr6_1:86705600-86705619 | None:intergenic | 40.0% | |
| GAATTGTGTAGCCGATTGTT+AGG | - | chr6_1:86705679-86705698 | None:intergenic | 40.0% | |
| ATGAGTTGCGTATCGGAAAA+CGG | + | chr6_1:86705782-86705801 | Msa0896530:intron | 40.0% | |
| ACTAAAGACAACACTAACCG+GGG | + | chr6_1:86705927-86705946 | Msa0896530:intron | 40.0% | |
| GAGTTCATATTATAAGGCCC+CGG | - | chr6_1:86705947-86705966 | None:intergenic | 40.0% | |
| ! | AATCAACAGAAGCACGTGTT+CGG | - | chr6_1:86706200-86706219 | None:intergenic | 40.0% |
| AGCACGTAACAGTAACAATG+AGG | - | chr6_1:86706525-86706544 | None:intergenic | 40.0% | |
| AGCTGGTTATGTCTGATCAA+TGG | - | chr6_1:86707291-86707310 | None:intergenic | 40.0% | |
| CCCACTTTCCTCATTTAAGT+AGG | + | chr6_1:86707489-86707508 | Msa0896530:intron | 40.0% | |
| ATATACACAAGTGGCTCCTA+AGG | - | chr6_1:86708063-86708082 | None:intergenic | 40.0% | |
| ! | ATGTTGCATGTTTGGAGTCA+GGG | + | chr6_1:86708679-86708698 | Msa0896530:intron | 40.0% |
| GGGTGAGTTTGACAAAATCA+CGG | + | chr6_1:86708699-86708718 | Msa0896530:intron | 40.0% | |
| TCACCACATTGAATGATGCA+TGG | + | chr6_1:86708980-86708999 | Msa0896530:CDS | 40.0% | |
| CACCACATTGAATGATGCAT+GGG | + | chr6_1:86708981-86709000 | Msa0896530:CDS | 40.0% | |
| !! | TGCAACGAGAGTATGCTTTT+TGG | - | chr6_1:86709107-86709126 | None:intergenic | 40.0% |
| !! | TCTTGGTGCTGTTCTTCATT+TGG | + | chr6_1:86709239-86709258 | Msa0896530:CDS | 40.0% |
| !! | CTTGGTGCTGTTCTTCATTT+GGG | + | chr6_1:86709240-86709259 | Msa0896530:CDS | 40.0% |
| !! | GGGATATAGCTTTGTGTTCA+CGG | + | chr6_1:86709260-86709279 | Msa0896530:CDS | 40.0% |
| !!! | TATCTTTTGAAGCACGGACA+CGG | + | chr6_1:86709457-86709476 | Msa0896530:intron | 40.0% |
| CAGACACTCATCTTCGTATT+AGG | - | chr6_1:86709578-86709597 | None:intergenic | 40.0% | |
| TTATGCCAGATAAGCTCAAC+AGG | + | chr6_1:86709840-86709859 | Msa0896530:intron | 40.0% | |
| ATAAGCTGCATAGAGTTGTG+AGG | + | chr6_1:86709927-86709946 | Msa0896530:intron | 40.0% | |
| TAAGCTGCATAGAGTTGTGA+GGG | + | chr6_1:86709928-86709947 | Msa0896530:intron | 40.0% | |
| GGGATAGACCAATTGTTTAG+AGG | + | chr6_1:86709950-86709969 | Msa0896530:intron | 40.0% | |
| TGCAGGACACTGATATAATG+TGG | + | chr6_1:86710071-86710090 | Msa0896530:intron | 40.0% | |
| TGGATAGTTGTGCATGTCAT+AGG | - | chr6_1:86710170-86710189 | None:intergenic | 40.0% | |
| GACATGCACAACTATCCAAA+TGG | + | chr6_1:86710172-86710191 | Msa0896530:CDS | 40.0% | |
| ATGCACAACTATCCAAATGG+AGG | + | chr6_1:86710175-86710194 | Msa0896530:CDS | 40.0% | |
| !! | AGGGTTTTGTCAATCTAGCA+AGG | + | chr6_1:86710372-86710391 | Msa0896530:CDS | 40.0% |
| !! | TGCTAATTGTTGTGTTGGCT+TGG | + | chr6_1:86710420-86710439 | Msa0896530:CDS | 40.0% |
| GAAAAACTTCACACCCTTCT+TGG | + | chr6_1:86710515-86710534 | Msa0896530:CDS | 40.0% | |
| !! | TTTTTGGCACACTCCAAGAA+GGG | - | chr6_1:86710531-86710550 | None:intergenic | 40.0% |
| GGCAGAAAACCCGACAAAAT+CGG | - | chr6_1:86704270-86704289 | None:intergenic | 45.0% | |
| AAATAGGTACTAGTGGCGTG+TGG | + | chr6_1:86704616-86704635 | Msa0896530:intron | 45.0% | |
| AATAGGTACTAGTGGCGTGT+GGG | + | chr6_1:86704617-86704636 | Msa0896530:intron | 45.0% | |
| ! | AGTTGAAGCACTCAACACGT+TGG | - | chr6_1:86705470-86705489 | None:intergenic | 45.0% |
| TGAGTTGCGTATCGGAAAAC+GGG | + | chr6_1:86705783-86705802 | Msa0896530:intron | 45.0% | |
| ! | ATCAACAGAAGCACGTGTTC+GGG | - | chr6_1:86706199-86706218 | None:intergenic | 45.0% |
| GACATAACCAGCTGTACACA+TGG | + | chr6_1:86707298-86707317 | Msa0896530:intron | 45.0% | |
| GAGGTTGGCATCCTCAATAA+TGG | + | chr6_1:86707912-86707931 | Msa0896530:intron | 45.0% | |
| AGTGGCTCCTAAGGCTATTT+GGG | - | chr6_1:86708054-86708073 | None:intergenic | 45.0% | |
| AAGTGGCTCCTAAGGCTATT+TGG | - | chr6_1:86708055-86708074 | None:intergenic | 45.0% | |
| CTTCACCATTGGTGTGTGTT+TGG | + | chr6_1:86708458-86708477 | Msa0896530:intron | 45.0% | |
| CTGACTCCAAACATGCAACA+TGG | - | chr6_1:86708680-86708699 | None:intergenic | 45.0% | |
| ! | CATGTTGCATGTTTGGAGTC+AGG | + | chr6_1:86708678-86708697 | Msa0896530:intron | 45.0% |
| AGCCCATGCATCATTCAATG+TGG | - | chr6_1:86708986-86709005 | None:intergenic | 45.0% | |
| GGTCCCATGTTATTACCACA+AGG | - | chr6_1:86709086-86709105 | None:intergenic | 45.0% | |
| ACCAACACATGTCCAACACT+GGG | + | chr6_1:86709547-86709566 | Msa0896530:intron | 45.0% | |
| AAGCTGCATAGAGTTGTGAG+GGG | + | chr6_1:86709929-86709948 | Msa0896530:intron | 45.0% | |
| !! | TTGTGTTGGCTTGGAGAACA+AGG | + | chr6_1:86710429-86710448 | Msa0896530:CDS | 45.0% |
| !! | CTTTTTGGCACACTCCAAGA+AGG | - | chr6_1:86710532-86710551 | None:intergenic | 45.0% |
| !! | ATTAGAATATTATTTATTTA+AGG | + | chr6_1:86705066-86705085 | Msa0896530:intron | 5.0% |
| !!! | TTAAATTTGTTTATTAATTA+AGG | - | chr6_1:86705378-86705397 | None:intergenic | 5.0% |
| !!! | AAGTTTTAATTTATTTTTTT+TGG | - | chr6_1:86705405-86705424 | None:intergenic | 5.0% |
| !!! | AAATAATAATAATATTTTAG+AGG | - | chr6_1:86707061-86707080 | None:intergenic | 5.0% |
| !! | TATATATCAAAAATAAAAAA+GGG | - | chr6_1:86707837-86707856 | None:intergenic | 5.0% |
| !! | TTATATATCAAAAATAAAAA+AGG | - | chr6_1:86707838-86707857 | None:intergenic | 5.0% |
| !! | CCATGACTTGTTCCCTTCTC+CGG | - | chr6_1:86703631-86703650 | None:intergenic | 50.0% |
| ATAGGTACTAGTGGCGTGTG+GGG | + | chr6_1:86704618-86704637 | Msa0896530:intron | 50.0% | |
| GCACCATTCGGAATTGTGTG+AGG | + | chr6_1:86704764-86704783 | Msa0896530:intron | 50.0% | |
| CCTCCTCACACAATTCCGAA+TGG | - | chr6_1:86704770-86704789 | None:intergenic | 50.0% | |
| CCATTCGGAATTGTGTGAGG+AGG | + | chr6_1:86704767-86704786 | Msa0896530:intron | 50.0% | |
| TCGGAATTGTGTGAGGAGGA+AGG | + | chr6_1:86704771-86704790 | Msa0896530:intron | 50.0% | |
| CGGAATTGTGTGAGGAGGAA+GGG | + | chr6_1:86704772-86704791 | Msa0896530:intron | 50.0% | |
| GGAATTGTGTGAGGAGGAAG+GGG | + | chr6_1:86704773-86704792 | Msa0896530:intron | 50.0% | |
| GAGTTGCGTATCGGAAAACG+GGG | + | chr6_1:86705784-86705803 | Msa0896530:intron | 50.0% | |
| CGTATCGGAAAACGGGGTTT+AGG | + | chr6_1:86705790-86705809 | Msa0896530:intron | 50.0% | |
| GTGGCTCCTAAGGCTATTTG+GGG | - | chr6_1:86708053-86708072 | None:intergenic | 50.0% | |
| ! | AATGATGCATGGGCTGAACC+AGG | + | chr6_1:86708991-86709010 | Msa0896530:CDS | 50.0% |
| CACCAACACATGTCCAACAC+TGG | + | chr6_1:86709546-86709565 | Msa0896530:intron | 50.0% | |
| ! | TCCCAGTGTTGGACATGTGT+TGG | - | chr6_1:86709551-86709570 | None:intergenic | 50.0% |
| TATTAGGCGTGTCCCAGTGT+TGG | - | chr6_1:86709562-86709581 | None:intergenic | 50.0% | |
| ACCAACACATGTCCGACACT+GGG | + | chr6_1:86709632-86709651 | Msa0896530:intron | 50.0% | |
| TATTAGGCGTGTCCCAGTGT+CGG | - | chr6_1:86709562-86709581 | None:intergenic | 50.0% | |
| TAGGGCCTGTTGAGCTTATC+TGG | - | chr6_1:86709848-86709867 | None:intergenic | 50.0% | |
| AGCTGCATAGAGTTGTGAGG+GGG | + | chr6_1:86709930-86709949 | Msa0896530:intron | 50.0% | |
| GGAGTGTGCCAAAAAGTTGC+AGG | + | chr6_1:86710536-86710555 | Msa0896530:CDS | 50.0% | |
| TTCTCCGGCAACGTTGTCGA+CGG | - | chr6_1:86703616-86703635 | None:intergenic | 55.0% | |
| TCGACAACGTTGCCGGAGAA+GGG | + | chr6_1:86703616-86703635 | Msa0896530:CDS | 55.0% | |
| CCGGAGAAGGGAACAAGTCA+TGG | + | chr6_1:86703628-86703647 | Msa0896530:CDS | 55.0% | |
| GGGACAACCATGTGTACAGC+TGG | - | chr6_1:86707308-86707327 | None:intergenic | 55.0% | |
| CACCAACACATGTCCGACAC+TGG | + | chr6_1:86709631-86709650 | Msa0896530:intron | 55.0% | |
| ! | TCCCAGTGTCGGACATGTGT+TGG | - | chr6_1:86709636-86709655 | None:intergenic | 55.0% |
| GTCGACAACGTTGCCGGAGA+AGG | + | chr6_1:86703615-86703634 | Msa0896530:CDS | 60.0% | |
| ! | GGTGCCGTCGACAACGTTGC+CGG | + | chr6_1:86703609-86703628 | Msa0896530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 86703585 | 86710561 | 86703585 | ID=Msa0896530;Name=Msa0896530 |
| chr6_1 | mRNA | 86703585 | 86710561 | 86703585 | ID=Msa0896530-mRNA-1;Parent=Msa0896530;Name=Msa0896530-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0|1|1|1|3|0|361 |
| chr6_1 | exon | 86703585 | 86703815 | 86703585 | ID=Msa0896530-mRNA-1:exon:14687;Parent=Msa0896530-mRNA-1 |
| chr6_1 | exon | 86708913 | 86709281 | 86708913 | ID=Msa0896530-mRNA-1:exon:14688;Parent=Msa0896530-mRNA-1 |
| chr6_1 | exon | 86710076 | 86710561 | 86710076 | ID=Msa0896530-mRNA-1:exon:14689;Parent=Msa0896530-mRNA-1 |
| chr6_1 | CDS | 86703585 | 86703815 | 86703585 | ID=Msa0896530-mRNA-1:cds;Parent=Msa0896530-mRNA-1 |
| chr6_1 | CDS | 86708913 | 86709281 | 86708913 | ID=Msa0896530-mRNA-1:cds;Parent=Msa0896530-mRNA-1 |
| chr6_1 | CDS | 86710076 | 86710561 | 86710076 | ID=Msa0896530-mRNA-1:cds;Parent=Msa0896530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
