Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289420 | GAU35574.1 | 59.542 | 262 | 100 | 4 | 2 | 260 | 59 | 317 | 4.00e-101 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289420 | sp|Q9SZL8|FRS5_ARATH | 25.902 | 305 | 208 | 8 | 1 | 296 | 336 | 631 | 1.86e-30 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289420 | A0A2Z6MSE9 | 59.542 | 262 | 100 | 4 | 2 | 260 | 59 | 317 | 1.91e-101 | 323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa1289420 | 0.813866 | 2.060573e-51 | -8.615850e-47 |
| Msa0016580 | Msa1289420 | 0.801555 | 8.518903e-49 | -8.615850e-47 |
| Msa0028380 | Msa1289420 | 0.810921 | 9.062521e-51 | -8.615850e-47 |
| Msa0102070 | Msa1289420 | 0.842762 | 2.121633e-58 | -8.615850e-47 |
| Msa0110260 | Msa1289420 | 0.811124 | 8.189679e-51 | -8.615850e-47 |
| Msa0110270 | Msa1289420 | 0.810889 | 9.207938e-51 | -8.615850e-47 |
| Msa0639610 | Msa1289420 | 0.827923 | 1.196359e-54 | -8.615850e-47 |
| Msa0725850 | Msa1289420 | 0.800433 | 1.444803e-48 | -8.615850e-47 |
| Msa0726140 | Msa1289420 | 0.828254 | 9.957278e-55 | -8.615850e-47 |
| Msa0729800 | Msa1289420 | 0.840330 | 9.279692e-58 | -8.615850e-47 |
| Msa0733290 | Msa1289420 | 0.829036 | 6.443627e-55 | -8.615850e-47 |
| Msa0741990 | Msa1289420 | 0.815774 | 7.782052e-52 | -8.615850e-47 |
| Msa0743810 | Msa1289420 | 0.860267 | 2.326078e-63 | -8.615850e-47 |
| Msa0745060 | Msa1289420 | 0.834844 | 2.368805e-56 | -8.615850e-47 |
| Msa0748970 | Msa1289420 | 0.832964 | 7.000190e-56 | -8.615850e-47 |
| Msa0767720 | Msa1289420 | 0.800186 | 1.621682e-48 | -8.615850e-47 |
| Msa0768290 | Msa1289420 | 0.825516 | 4.492429e-54 | -8.615850e-47 |
| Msa0768370 | Msa1289420 | 0.834148 | 3.544097e-56 | -8.615850e-47 |
| Msa0783160 | Msa1289420 | 0.847296 | 1.264784e-59 | -8.615850e-47 |
| Msa0787600 | Msa1289420 | 0.820455 | 6.796723e-53 | -8.615850e-47 |
| Msa0808010 | Msa1289420 | 0.847904 | 8.607890e-60 | -8.615850e-47 |
| Msa0808020 | Msa1289420 | 0.841750 | 3.933102e-58 | -8.615850e-47 |
| Msa0811270 | Msa1289420 | 0.805303 | 1.424874e-49 | -8.615850e-47 |
| Msa0825860 | Msa1289420 | 0.843141 | 1.681516e-58 | -8.615850e-47 |
| Msa0833290 | Msa1289420 | 0.806374 | 8.483708e-50 | -8.615850e-47 |
| Msa0124100 | Msa1289420 | 0.814206 | 1.733619e-51 | -8.615850e-47 |
| Msa0124150 | Msa1289420 | 0.812616 | 3.876535e-51 | -8.615850e-47 |
| Msa0131770 | Msa1289420 | 0.801398 | 9.177422e-49 | -8.615850e-47 |
| Msa0142220 | Msa1289420 | 0.812588 | 3.931710e-51 | -8.615850e-47 |
| Msa0145750 | Msa1289420 | 0.808991 | 2.358988e-50 | -8.615850e-47 |
| Msa0200000 | Msa1289420 | 0.833437 | 5.335785e-56 | -8.615850e-47 |
| Msa0227480 | Msa1289420 | 0.839814 | 1.265395e-57 | -8.615850e-47 |
| Msa0232850 | Msa1289420 | 0.811797 | 5.848386e-51 | -8.615850e-47 |
| Msa1246880 | Msa1289420 | 0.800909 | 1.155158e-48 | -8.615850e-47 |
| Msa1248300 | Msa1289420 | 0.913318 | 7.073648e-84 | -8.615850e-47 |
| Msa1248310 | Msa1289420 | 0.899777 | 1.416424e-77 | -8.615850e-47 |
| Msa1248370 | Msa1289420 | 0.891527 | 3.663393e-74 | -8.615850e-47 |
| Msa1269670 | Msa1289420 | 0.831551 | 1.565473e-55 | -8.615850e-47 |
| Msa1270230 | Msa1289420 | 0.863077 | 3.219293e-64 | -8.615850e-47 |
| Msa1270240 | Msa1289420 | 0.829520 | 4.916800e-55 | -8.615850e-47 |
| Msa1270270 | Msa1289420 | 0.818344 | 2.058159e-52 | -8.615850e-47 |
| Msa1283330 | Msa1289420 | 0.852532 | 4.340159e-61 | -8.615850e-47 |
| Msa1285930 | Msa1289420 | 0.851584 | 8.067209e-61 | -8.615850e-47 |
| Msa1287800 | Msa1289420 | 0.850426 | 1.710893e-60 | -8.615850e-47 |
| Msa1287810 | Msa1289420 | 0.865266 | 6.689162e-65 | -8.615850e-47 |
| Msa1289420 | Msa1289430 | 0.889415 | 2.472451e-73 | -8.615850e-47 |
| Msa1289420 | Msa1307890 | 0.821362 | 4.203436e-53 | -8.615850e-47 |
| Msa1289420 | Msa1320300 | 0.844207 | 8.723358e-59 | -8.615850e-47 |
| Msa1289420 | Msa1321560 | 0.803555 | 3.296365e-49 | -8.615850e-47 |
| Msa1289420 | Msa1340590 | 0.831855 | 1.317160e-55 | -8.615850e-47 |
| Msa1289420 | Msa1369430 | 0.816762 | 4.677764e-52 | -8.615850e-47 |
| Msa1289420 | Msa1397580 | 0.820572 | 6.391173e-53 | -8.615850e-47 |
| Msa1289420 | Msa1404000 | 0.826314 | 2.903410e-54 | -8.615850e-47 |
| Msa1289420 | Msa1415310 | 0.832910 | 7.216601e-56 | -8.615850e-47 |
| Msa1289420 | Msa1422180 | 0.813549 | 2.420261e-51 | -8.615850e-47 |
| Msa1289420 | Msa1433120 | 0.824125 | 9.562763e-54 | -8.615850e-47 |
| Msa0384800 | Msa1289420 | 0.807533 | 4.825010e-50 | -8.615850e-47 |
| Msa0406120 | Msa1289420 | 0.803988 | 2.679696e-49 | -8.615850e-47 |
| Msa0407750 | Msa1289420 | 0.800412 | 1.458581e-48 | -8.615850e-47 |
| Msa0414410 | Msa1289420 | 0.821681 | 3.547358e-53 | -8.615850e-47 |
| Msa0414420 | Msa1289420 | 0.858014 | 1.101368e-62 | -8.615850e-47 |
| Msa0436780 | Msa1289420 | 0.820231 | 7.650417e-53 | -8.615850e-47 |
| Msa0438620 | Msa1289420 | 0.801045 | 1.083830e-48 | -8.615850e-47 |
| Msa0450000 | Msa1289420 | 0.868033 | 8.820102e-66 | -8.615850e-47 |
| Msa0450570 | Msa1289420 | 0.807446 | 5.033902e-50 | -8.615850e-47 |
| Msa0452900 | Msa1289420 | 0.863805 | 1.914742e-64 | -8.615850e-47 |
| Msa0453120 | Msa1289420 | 0.833467 | 5.244275e-56 | -8.615850e-47 |
| Msa0454370 | Msa1289420 | 0.800303 | 1.535185e-48 | -8.615850e-47 |
| Msa0981370 | Msa1289420 | 0.808520 | 2.975315e-50 | -8.615850e-47 |
| Msa0989060 | Msa1289420 | 0.823476 | 1.356789e-53 | -8.615850e-47 |
| Msa0997500 | Msa1289420 | 0.811385 | 7.190254e-51 | -8.615850e-47 |
| Msa1016280 | Msa1289420 | 0.856507 | 3.070791e-62 | -8.615850e-47 |
| Msa1025360 | Msa1289420 | 0.861300 | 1.130297e-63 | -8.615850e-47 |
| Msa1025370 | Msa1289420 | 0.862035 | 6.736474e-64 | -8.615850e-47 |
| Msa1044830 | Msa1289420 | 0.863524 | 2.341073e-64 | -8.615850e-47 |
| Msa1044840 | Msa1289420 | 0.861244 | 1.175457e-63 | -8.615850e-47 |
| Msa1060840 | Msa1289420 | 0.846805 | 1.724034e-59 | -8.615850e-47 |
| Msa1068420 | Msa1289420 | 0.821013 | 5.058706e-53 | -8.615850e-47 |
| Msa1092990 | Msa1289420 | 0.836428 | 9.414094e-57 | -8.615850e-47 |
| Msa1100980 | Msa1289420 | 0.828006 | 1.142690e-54 | -8.615850e-47 |
| Msa0267000 | Msa1289420 | 0.855506 | 6.025801e-62 | -8.615850e-47 |
| Msa0267010 | Msa1289420 | 0.855465 | 6.195494e-62 | -8.615850e-47 |
| Msa0342240 | Msa1289420 | 0.841249 | 5.329062e-58 | -8.615850e-47 |
| Msa0342750 | Msa1289420 | 0.817998 | 2.464810e-52 | -8.615850e-47 |
| Msa0360510 | Msa1289420 | 0.833186 | 6.161936e-56 | -8.615850e-47 |
| Msa1109440 | Msa1289420 | 0.820605 | 6.280344e-53 | -8.615850e-47 |
| Msa1121200 | Msa1289420 | 0.846538 | 2.039905e-59 | -8.615850e-47 |
| Msa1121480 | Msa1289420 | 0.817553 | 3.107000e-52 | -8.615850e-47 |
| Msa1135740 | Msa1289420 | 0.806932 | 6.470060e-50 | -8.615850e-47 |
| Msa1146110 | Msa1289420 | 0.836758 | 7.756790e-57 | -8.615850e-47 |
| Msa1149360 | Msa1289420 | 0.805515 | 1.286084e-49 | -8.615850e-47 |
| Msa1150370 | Msa1289420 | 0.837516 | 4.964011e-57 | -8.615850e-47 |
| Msa1187940 | Msa1289420 | 0.822161 | 2.746268e-53 | -8.615850e-47 |
| Msa1187950 | Msa1289420 | 0.809748 | 1.622959e-50 | -8.615850e-47 |
| Msa1192640 | Msa1289420 | 0.832667 | 8.293120e-56 | -8.615850e-47 |
| Msa0491590 | Msa1289420 | 0.843214 | 1.608220e-58 | -8.615850e-47 |
| Msa0506270 | Msa1289420 | 0.824972 | 6.040401e-54 | -8.615850e-47 |
| Msa0534540 | Msa1289420 | 0.835313 | 1.804313e-56 | -8.615850e-47 |
| Msa0564890 | Msa1289420 | 0.820524 | 6.554189e-53 | -8.615850e-47 |
| Msa0846330 | Msa1289420 | 0.841684 | 4.092350e-58 | -8.615850e-47 |
| Msa0846350 | Msa1289420 | 0.841841 | 3.719394e-58 | -8.615850e-47 |
| Msa0848960 | Msa1289420 | 0.811297 | 7.513298e-51 | -8.615850e-47 |
| Msa0858980 | Msa1289420 | 0.817773 | 2.771278e-52 | -8.615850e-47 |
| Msa0865320 | Msa1289420 | 0.826341 | 2.860729e-54 | -8.615850e-47 |
| Msa0885290 | Msa1289420 | 0.828512 | 8.629474e-55 | -8.615850e-47 |
| Msa0888370 | Msa1289420 | 0.815877 | 7.381754e-52 | -8.615850e-47 |
| Msa0888420 | Msa1289420 | 0.828141 | 1.060384e-54 | -8.615850e-47 |
| Msa0896080 | Msa1289420 | 0.807724 | 4.394795e-50 | -8.615850e-47 |
| Msa0899430 | Msa1289420 | 0.816619 | 5.038150e-52 | -8.615850e-47 |
| Msa0899450 | Msa1289420 | 0.809794 | 1.586504e-50 | -8.615850e-47 |
| Msa0901070 | Msa1289420 | 0.812928 | 3.311664e-51 | -8.615850e-47 |
| Msa0924050 | Msa1289420 | 0.801504 | 8.726950e-49 | -8.615850e-47 |
| Msa0924060 | Msa1289420 | 0.813640 | 2.310402e-51 | -8.615850e-47 |
| Msa0958550 | Msa1289420 | 0.812664 | 3.782694e-51 | -8.615850e-47 |
| Msa0967280 | Msa1289420 | 0.867303 | 1.512042e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289420 | MtrunA17_Chr2g0287651 | 59.387 | 261 | 104 | 2 | 2 | 260 | 339 | 599 | 1.68e-104 | 338 |
| Msa1289420 | MtrunA17_Chr1g0203051 | 34.231 | 260 | 169 | 2 | 2 | 259 | 341 | 600 | 2.92e-47 | 177 |
| Msa1289420 | MtrunA17_Chr1g0202341 | 29.811 | 265 | 178 | 4 | 2 | 259 | 312 | 575 | 3.67e-37 | 148 |
| Msa1289420 | MtrunA17_Chr6g0477261 | 27.612 | 268 | 182 | 4 | 2 | 258 | 143 | 409 | 1.88e-33 | 136 |
| Msa1289420 | MtrunA17_Chr2g0324011 | 29.545 | 264 | 180 | 2 | 2 | 259 | 271 | 534 | 1.20e-32 | 133 |
| Msa1289420 | MtrunA17_Chr2g0329031 | 26.792 | 265 | 186 | 4 | 2 | 260 | 266 | 528 | 8.70e-31 | 129 |
| Msa1289420 | MtrunA17_Chr2g0296781 | 26.866 | 268 | 184 | 4 | 2 | 258 | 254 | 520 | 1.74e-30 | 127 |
| Msa1289420 | MtrunA17_Chr5g0441581 | 27.737 | 274 | 176 | 5 | 3 | 260 | 283 | 550 | 2.22e-30 | 127 |
| Msa1289420 | MtrunA17_Chr5g0448511 | 26.280 | 293 | 202 | 7 | 1 | 286 | 99 | 384 | 7.85e-30 | 124 |
| Msa1289420 | MtrunA17_Chr5g0448761 | 25.939 | 293 | 203 | 6 | 1 | 286 | 327 | 612 | 3.94e-29 | 124 |
| Msa1289420 | MtrunA17_Chr1g0207551 | 28.090 | 267 | 181 | 6 | 2 | 260 | 293 | 556 | 5.53e-29 | 123 |
| Msa1289420 | MtrunA17_Chr8g0363841 | 26.316 | 266 | 189 | 3 | 1 | 259 | 278 | 543 | 9.03e-29 | 122 |
| Msa1289420 | MtrunA17_Chr2g0308841 | 30.000 | 190 | 132 | 1 | 71 | 259 | 4 | 193 | 2.53e-28 | 114 |
| Msa1289420 | MtrunA17_Chr3g0082121 | 28.754 | 313 | 185 | 7 | 2 | 297 | 297 | 588 | 3.03e-28 | 120 |
| Msa1289420 | MtrunA17_Chr6g0458391 | 25.475 | 263 | 189 | 3 | 2 | 258 | 469 | 730 | 9.34e-27 | 116 |
| Msa1289420 | MtrunA17_Chr1g0203721 | 25.856 | 263 | 188 | 3 | 2 | 258 | 327 | 588 | 2.30e-26 | 115 |
| Msa1289420 | MtrunA17_Chr3g0080351 | 26.119 | 268 | 181 | 5 | 2 | 258 | 327 | 588 | 6.52e-26 | 114 |
| Msa1289420 | MtrunA17_Chr1g0196541 | 26.415 | 212 | 150 | 3 | 6 | 212 | 258 | 468 | 1.16e-25 | 112 |
| Msa1289420 | MtrunA17_Chr1g0198761 | 27.757 | 263 | 180 | 6 | 2 | 258 | 319 | 577 | 9.43e-24 | 107 |
| Msa1289420 | MtrunA17_Chr3g0118611 | 23.360 | 381 | 257 | 14 | 1 | 365 | 205 | 566 | 2.95e-23 | 105 |
| Msa1289420 | MtrunA17_Chr2g0291591 | 27.876 | 226 | 156 | 4 | 2 | 221 | 321 | 545 | 1.98e-22 | 102 |
| Msa1289420 | MtrunA17_Chr2g0291581 | 24.627 | 268 | 188 | 5 | 3 | 257 | 319 | 585 | 3.22e-22 | 101 |
| Msa1289420 | MtrunA17_Chr2g0276841 | 24.161 | 298 | 197 | 8 | 2 | 284 | 337 | 620 | 1.98e-20 | 96.3 |
| Msa1289420 | MtrunA17_Chr2g0294841 | 26.429 | 280 | 162 | 8 | 2 | 258 | 315 | 573 | 2.22e-19 | 92.8 |
| Msa1289420 | MtrunA17_Chr5g0440451 | 20.541 | 370 | 275 | 11 | 1 | 362 | 308 | 666 | 1.90e-18 | 90.1 |
| Msa1289420 | MtrunA17_Chr5g0431001 | 33.108 | 148 | 93 | 3 | 2 | 143 | 333 | 480 | 4.33e-18 | 88.2 |
| Msa1289420 | MtrunA17_Chr1g0164591 | 33.846 | 130 | 80 | 2 | 2 | 125 | 177 | 306 | 3.84e-17 | 83.2 |
| Msa1289420 | MtrunA17_Chr2g0287061 | 22.000 | 300 | 219 | 7 | 2 | 296 | 409 | 698 | 1.08e-16 | 84.3 |
| Msa1289420 | MtrunA17_Chr2g0290391 | 25.517 | 290 | 186 | 9 | 2 | 278 | 326 | 598 | 1.23e-16 | 84.0 |
| Msa1289420 | MtrunA17_Chr1g0149131 | 33.645 | 107 | 66 | 1 | 21 | 122 | 4 | 110 | 2.22e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289420 | AT4G38180.1 | 25.902 | 305 | 208 | 8 | 1 | 296 | 336 | 631 | 1.90e-31 | 131 |
| Msa1289420 | AT4G15090.1 | 26.038 | 265 | 189 | 3 | 2 | 260 | 313 | 576 | 2.10e-31 | 131 |
| Msa1289420 | AT4G15090.5 | 26.038 | 265 | 189 | 3 | 2 | 260 | 313 | 576 | 2.10e-31 | 131 |
| Msa1289420 | AT4G15090.3 | 26.038 | 265 | 189 | 3 | 2 | 260 | 313 | 576 | 2.10e-31 | 131 |
| Msa1289420 | AT4G15090.2 | 26.038 | 265 | 189 | 3 | 2 | 260 | 313 | 576 | 2.10e-31 | 131 |
| Msa1289420 | AT4G15090.4 | 26.038 | 265 | 189 | 3 | 2 | 260 | 313 | 576 | 2.10e-31 | 131 |
| Msa1289420 | AT1G76320.1 | 28.302 | 265 | 181 | 4 | 2 | 260 | 250 | 511 | 2.31e-29 | 124 |
| Msa1289420 | AT1G76320.4 | 28.302 | 265 | 181 | 4 | 2 | 260 | 250 | 511 | 2.31e-29 | 124 |
| Msa1289420 | AT1G76320.2 | 28.302 | 265 | 181 | 4 | 2 | 260 | 250 | 511 | 2.31e-29 | 124 |
| Msa1289420 | AT1G76320.3 | 28.517 | 263 | 179 | 4 | 2 | 258 | 250 | 509 | 2.67e-29 | 124 |
| Msa1289420 | AT3G22170.2 | 23.718 | 312 | 223 | 6 | 2 | 307 | 322 | 624 | 7.40e-28 | 120 |
| Msa1289420 | AT3G22170.1 | 23.718 | 312 | 223 | 6 | 2 | 307 | 322 | 624 | 7.40e-28 | 120 |
| Msa1289420 | AT1G52520.1 | 26.493 | 268 | 183 | 5 | 3 | 257 | 336 | 602 | 1.68e-24 | 109 |
| Msa1289420 | AT4G19990.1 | 24.088 | 274 | 181 | 5 | 2 | 258 | 204 | 467 | 3.85e-24 | 108 |
| Msa1289420 | AT4G19990.6 | 24.088 | 274 | 181 | 5 | 2 | 258 | 261 | 524 | 5.02e-24 | 108 |
| Msa1289420 | AT4G19990.2 | 24.088 | 274 | 181 | 5 | 2 | 258 | 261 | 524 | 5.02e-24 | 108 |
| Msa1289420 | AT4G19990.7 | 24.088 | 274 | 181 | 5 | 2 | 258 | 275 | 538 | 5.54e-24 | 108 |
| Msa1289420 | AT4G19990.3 | 24.088 | 274 | 181 | 5 | 2 | 258 | 261 | 524 | 5.65e-24 | 108 |
| Msa1289420 | AT4G19990.4 | 24.088 | 274 | 181 | 5 | 2 | 258 | 261 | 524 | 5.65e-24 | 108 |
| Msa1289420 | AT4G19990.5 | 24.088 | 274 | 181 | 5 | 2 | 258 | 261 | 524 | 5.69e-24 | 107 |
| Msa1289420 | AT1G80010.1 | 26.642 | 274 | 168 | 9 | 2 | 254 | 359 | 620 | 1.26e-22 | 103 |
| Msa1289420 | AT3G06250.2 | 25.287 | 261 | 187 | 5 | 2 | 258 | 413 | 669 | 2.05e-22 | 103 |
| Msa1289420 | AT3G06250.1 | 25.287 | 261 | 187 | 5 | 2 | 258 | 413 | 669 | 2.05e-22 | 103 |
| Msa1289420 | AT3G06250.3 | 25.287 | 261 | 187 | 5 | 2 | 258 | 413 | 669 | 2.05e-22 | 103 |
| Msa1289420 | AT2G27110.2 | 24.281 | 313 | 215 | 11 | 1 | 300 | 283 | 586 | 5.34e-21 | 98.6 |
| Msa1289420 | AT2G27110.1 | 24.281 | 313 | 215 | 11 | 1 | 300 | 283 | 586 | 5.34e-21 | 98.6 |
| Msa1289420 | AT2G27110.3 | 24.906 | 265 | 189 | 8 | 1 | 258 | 138 | 399 | 6.24e-21 | 98.2 |
| Msa1289420 | AT5G18960.2 | 23.755 | 261 | 191 | 5 | 2 | 258 | 437 | 693 | 4.50e-20 | 95.5 |
| Msa1289420 | AT5G18960.1 | 23.755 | 261 | 191 | 5 | 2 | 258 | 437 | 693 | 4.50e-20 | 95.5 |
| Msa1289420 | AT4G38170.1 | 20.876 | 388 | 262 | 10 | 1 | 369 | 101 | 462 | 1.09e-18 | 90.5 |
| Msa1289420 | AT1G10240.2 | 23.311 | 296 | 202 | 7 | 2 | 284 | 315 | 598 | 2.26e-18 | 90.1 |
| Msa1289420 | AT1G10240.1 | 23.311 | 296 | 202 | 7 | 2 | 284 | 315 | 598 | 2.26e-18 | 90.1 |
| Msa1289420 | AT2G32250.6 | 18.992 | 258 | 202 | 3 | 7 | 258 | 262 | 518 | 1.07e-15 | 81.6 |
| Msa1289420 | AT2G32250.1 | 18.992 | 258 | 202 | 3 | 7 | 258 | 262 | 518 | 1.07e-15 | 81.6 |
| Msa1289420 | AT2G32250.3 | 18.992 | 258 | 202 | 3 | 7 | 258 | 262 | 518 | 1.07e-15 | 81.6 |
| Msa1289420 | AT2G32250.2 | 18.992 | 258 | 202 | 3 | 7 | 258 | 262 | 518 | 1.13e-15 | 81.6 |
| Msa1289420 | AT2G32250.4 | 18.992 | 258 | 202 | 3 | 7 | 258 | 262 | 518 | 1.13e-15 | 81.6 |
| Msa1289420 | AT2G32250.8 | 18.992 | 258 | 202 | 3 | 7 | 258 | 221 | 477 | 1.27e-15 | 81.3 |
| Msa1289420 | AT2G32250.7 | 18.992 | 258 | 202 | 3 | 7 | 258 | 221 | 477 | 1.34e-15 | 81.3 |
| Msa1289420 | AT2G32250.5 | 18.992 | 258 | 202 | 3 | 7 | 258 | 262 | 518 | 1.44e-15 | 81.3 |
| Msa1289420 | AT5G28530.4 | 23.492 | 315 | 220 | 10 | 2 | 308 | 267 | 568 | 5.23e-12 | 69.7 |
| Msa1289420 | AT5G28530.1 | 23.492 | 315 | 220 | 10 | 2 | 308 | 330 | 631 | 9.18e-12 | 68.9 |
| Msa1289420 | AT5G28530.5 | 23.175 | 315 | 217 | 10 | 2 | 308 | 267 | 564 | 2.98e-11 | 67.0 |
| Msa1289420 | AT5G28530.3 | 23.175 | 315 | 217 | 10 | 2 | 308 | 330 | 627 | 4.10e-11 | 66.6 |
| Msa1289420 | AT5G28530.2 | 23.175 | 315 | 217 | 10 | 2 | 308 | 330 | 627 | 4.10e-11 | 66.6 |
Find 115 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGAAATTTGAAGAGTTT+TGG | 0.199469 | 8_3:-43296925 | Msa1289420:CDS |
| ATTGAACAGTGGGTACTTTC+TGG | 0.209213 | 8_3:-43295251 | Msa1289420:CDS |
| TTCCTTGTTCTCATATGTTT+TGG | 0.279638 | 8_3:+43296856 | None:intergenic |
| CCATCTGTTACAACTGCTTT+TGG | 0.282718 | 8_3:+43297100 | None:intergenic |
| TAGATTCCAGCGTCAGAAAA+AGG | 0.290944 | 8_3:-43295093 | Msa1289420:CDS |
| TGTGCTACTTTGGCTTGTTC+AGG | 0.295985 | 8_3:+43295562 | None:intergenic |
| TTGGCTATCATGCTGAGATA+TGG | 0.301731 | 8_3:+43296203 | None:intergenic |
| GGTGACTTGGTGAGGGAAAA+TGG | 0.304599 | 8_3:-43296902 | Msa1289420:CDS |
| TTCTATGAGGGAGGCGATAA+AGG | 0.336989 | 8_3:-43297071 | Msa1289420:CDS |
| TTTCATACAATCTAGAAAAC+TGG | 0.352069 | 8_3:+43297129 | None:intergenic |
| GAAAAGGCCGACTTTATTCT+TGG | 0.356033 | 8_3:-43294474 | Msa1289420:CDS |
| AAGAGTTATGTTAGGAAGAA+AGG | 0.363884 | 8_3:-43296749 | Msa1289420:CDS |
| GGAAGATTTCATTGAAGAAA+TGG | 0.366131 | 8_3:-43294808 | Msa1289420:CDS |
| TGCAACTACGAAGGGAAATC+TGG | 0.367738 | 8_3:-43294534 | Msa1289420:CDS |
| GAAAGTACCCACTGTTCAAT+TGG | 0.387744 | 8_3:+43295254 | None:intergenic |
| GTTTCTTCTCTCTTCTGATT+AGG | 0.391776 | 8_3:+43295188 | None:intergenic |
| TACCTGCGTGACAATTTCTT+TGG | 0.393696 | 8_3:-43296818 | Msa1289420:CDS |
| AGTCTCCATGATGCCCTAAC+AGG | 0.397514 | 8_3:+43295508 | None:intergenic |
| CATAGACGATGACGCGTACT+TGG | 0.409842 | 8_3:+43297040 | None:intergenic |
| ACCTTTCTTCACAACTGAAA+GGG | 0.413641 | 8_3:+43294956 | None:intergenic |
| GGGAAATCTGGAAATTCCTT+TGG | 0.413835 | 8_3:-43294522 | Msa1289420:CDS |
| CCCCTTTCAGTTGTGAAGAA+AGG | 0.414874 | 8_3:-43294957 | Msa1289420:CDS |
| TGGCTATCATGCTGAGATAT+GGG | 0.417223 | 8_3:+43296204 | None:intergenic |
| CAGCACAGGGGATGAAAACT+TGG | 0.418956 | 8_3:+43296646 | None:intergenic |
| CGTGTGGTGAGGCACCTGTT+AGG | 0.420139 | 8_3:-43295522 | Msa1289420:CDS |
| TCTCAAACCTTTGTTTATCC+AGG | 0.423510 | 8_3:-43294688 | Msa1289420:CDS |
| TAGTTGCAAAGAACTACATT+AGG | 0.424085 | 8_3:+43294549 | None:intergenic |
| ATTGTTCATTGTCGCGACTT+TGG | 0.431904 | 8_3:+43295386 | None:intergenic |
| TGCTATTATGTGATGCATAA+TGG | 0.432853 | 8_3:-43294768 | Msa1289420:CDS |
| TGAGGCTGCTGAAATCTATA+CGG | 0.433917 | 8_3:-43296597 | Msa1289420:CDS |
| TGGTTATCTTGAAGGAAATC+AGG | 0.434205 | 8_3:-43294748 | Msa1289420:CDS |
| GCCGACTTTATTCTTGGCAG+TGG | 0.447519 | 8_3:-43294468 | Msa1289420:CDS |
| AAATCATAAAGAGTTATGTT+AGG | 0.452282 | 8_3:-43296757 | Msa1289420:CDS |
| ATAAACAAGGTGCTGGTTGA+TGG | 0.458276 | 8_3:-43294645 | Msa1289420:CDS |
| TATCGAAGATAGTTGGTTGT+TGG | 0.472017 | 8_3:+43295015 | None:intergenic |
| CTAAGCGTATCGAAGATAGT+TGG | 0.472645 | 8_3:+43295008 | None:intergenic |
| TGGTGCTGTTGAAGTTGACC+TGG | 0.479682 | 8_3:-43294502 | Msa1289420:CDS |
| CAGGCTAAAATTAATGATGT+TGG | 0.480834 | 8_3:-43294669 | Msa1289420:CDS |
| ATATGAGAACAAGGAATTGT+GGG | 0.486925 | 8_3:-43296849 | Msa1289420:CDS |
| CAGAAGAGAGAAGAAACATA+TGG | 0.489506 | 8_3:-43295182 | Msa1289420:CDS |
| AAGCCAAAGTAGCACAGAAA+AGG | 0.490310 | 8_3:-43295555 | Msa1289420:CDS |
| AGCCAGAAAGACGTGGGAAA+AGG | 0.492341 | 8_3:-43295983 | Msa1289420:CDS |
| GGATGTTGCATGTGATGATC+AGG | 0.492457 | 8_3:+43294711 | None:intergenic |
| CGCGTCATCGTCTATGTGCT+TGG | 0.493517 | 8_3:-43297033 | Msa1289420:CDS |
| TGCAGATGAGTTGTCAGCAC+AGG | 0.496005 | 8_3:+43296632 | None:intergenic |
| CTGCGTGACAATTTCTTTGG+TGG | 0.497233 | 8_3:-43296815 | Msa1289420:CDS |
| TGACGTTATATCAGAAGTTA+CGG | 0.500910 | 8_3:-43294838 | Msa1289420:CDS |
| TCTGGTGGAAAGAGAACTAC+TGG | 0.502715 | 8_3:-43295233 | Msa1289420:CDS |
| GATATAACGTCATATTCAAT+CGG | 0.503187 | 8_3:+43294849 | None:intergenic |
| GTGAAAGAAGAGATTATGAA+AGG | 0.507624 | 8_3:-43296557 | Msa1289420:CDS |
| AAGAAACATATGGTTTGAAG+AGG | 0.510241 | 8_3:-43295172 | Msa1289420:intron |
| AAAGGTCGATGCTTTGAAAG+AGG | 0.512718 | 8_3:-43295075 | Msa1289420:CDS |
| CATATGAGAACAAGGAATTG+TGG | 0.515979 | 8_3:-43296850 | Msa1289420:CDS |
| TGCATCACATAATAGCACTT+TGG | 0.521664 | 8_3:+43294774 | None:intergenic |
| GACCTTTCTTCACAACTGAA+AGG | 0.523246 | 8_3:+43294955 | None:intergenic |
| TAGGGCATCATGGAGACTAA+TGG | 0.524044 | 8_3:-43295503 | Msa1289420:CDS |
| ATTGAGGCTAGCTTCAGAAT+CGG | 0.527357 | 8_3:+43294896 | None:intergenic |
| AAACAATAGAAACTTATATG+TGG | 0.527967 | 8_3:-43297159 | Msa1289420:CDS |
| ATTCTTGGCAGTGGAATCAA+AGG | 0.531010 | 8_3:-43294459 | Msa1289420:CDS |
| GTGTGGTGAGGCACCTGTTA+GGG | 0.531715 | 8_3:-43295521 | Msa1289420:CDS |
| ATGCATAATGGTTATCTTGA+AGG | 0.532784 | 8_3:-43294756 | Msa1289420:CDS |
| AGTTGACCTGGTGATAGAAA+AGG | 0.534493 | 8_3:-43294490 | Msa1289420:CDS |
| TCACATAATAGCACTTTGGC+TGG | 0.535841 | 8_3:+43294778 | None:intergenic |
| CAGATGGTGACGGTTCTATG+AGG | 0.536155 | 8_3:-43297084 | Msa1289420:CDS |
| GGAAAGAGAACTACTGGAAA+TGG | 0.539172 | 8_3:-43295227 | Msa1289420:CDS |
| TAACCCAGGGATTGTTCTCA+AGG | 0.542014 | 8_3:+43296879 | None:intergenic |
| GGAAAGATGCTCATAGTGGC+AGG | 0.542045 | 8_3:+43294981 | None:intergenic |
| TTGACAAAATATATTGAGGA+AGG | 0.543857 | 8_3:-43296479 | Msa1289420:CDS |
| AGGCACCTGTTAGGGCATCA+TGG | 0.549978 | 8_3:-43295513 | Msa1289420:CDS |
| ATATGATAAGAATTATATTG+AGG | 0.552416 | 8_3:+43294880 | None:intergenic |
| CCTTTCTTCACAACTGAAAG+GGG | 0.552673 | 8_3:+43294957 | None:intergenic |
| GTCAACTTCAACAGCACCAA+AGG | 0.553675 | 8_3:+43294506 | None:intergenic |
| TAGTTCTTTGCAACTACGAA+GGG | 0.555401 | 8_3:-43294542 | Msa1289420:CDS |
| GCAGATGAGTTGTCAGCACA+GGG | 0.564043 | 8_3:+43296633 | None:intergenic |
| TGGCAGGATAAGAACATAGA+CGG | 0.565361 | 8_3:-43295604 | Msa1289420:intron |
| ATGGCCTTGAGAACAATCCC+TGG | 0.565953 | 8_3:-43296883 | Msa1289420:CDS |
| TCCCAGTCCAATTGAACAGT+GGG | 0.576738 | 8_3:-43295261 | Msa1289420:intron |
| AACAATAGAAACTTATATGT+GGG | 0.579140 | 8_3:-43297158 | Msa1289420:CDS |
| AATGCGGGAGAAGGATCAAA+GGG | 0.581939 | 8_3:-43296177 | Msa1289420:CDS |
| AAATGCGGGAGAAGGATCAA+AGG | 0.582226 | 8_3:-43296178 | Msa1289420:CDS |
| ATCAGAAGTTACGGAAGATG+AGG | 0.588403 | 8_3:-43294829 | Msa1289420:CDS |
| CCAAAAGCAGTTGTAACAGA+TGG | 0.588696 | 8_3:-43297100 | Msa1289420:CDS |
| GTAGTTCTTTGCAACTACGA+AGG | 0.588949 | 8_3:-43294543 | Msa1289420:CDS |
| GCATGCTAGCCAGAAAGACG+TGG | 0.591586 | 8_3:-43295990 | Msa1289420:CDS |
| TGTTGGAATAAACAAGGTGC+TGG | 0.593438 | 8_3:-43294652 | Msa1289420:CDS |
| TTGCAAAGAACTACATTAGG+TGG | 0.594667 | 8_3:+43294552 | None:intergenic |
| GAAGTTGACAAAATATATTG+AGG | 0.598462 | 8_3:-43296483 | Msa1289420:CDS |
| TCCACTGCCAAGAATAAAGT+CGG | 0.603354 | 8_3:+43294467 | None:intergenic |
| GAACAGTGGGTACTTTCTGG+TGG | 0.607005 | 8_3:-43295248 | Msa1289420:CDS |
| TTCTTCACAACTGAAAGGGG+AGG | 0.609468 | 8_3:+43294960 | None:intergenic |
| TGGATAAACAAAGGTTTGAG+AGG | 0.614232 | 8_3:+43294690 | None:intergenic |
| TTGGCTAGCATGATGAGACA+TGG | 0.619223 | 8_3:+43295898 | None:intergenic |
| GAAAGGTGTTGCAATGAGTG+TGG | 0.626883 | 8_3:-43296540 | Msa1289420:CDS |
| AGATGGTGACGGTTCTATGA+GGG | 0.626993 | 8_3:-43297083 | Msa1289420:CDS |
| GGGAGGAAAGATGCTCATAG+TGG | 0.627739 | 8_3:+43294977 | None:intergenic |
| TGGCCTTGAGAACAATCCCT+GGG | 0.628290 | 8_3:-43296882 | Msa1289420:CDS |
| CAAGAAATTTGAATCTCGAG+AGG | 0.629020 | 8_3:-43296405 | Msa1289420:intron |
| TAATGATGTTGGAATAAACA+AGG | 0.630345 | 8_3:-43294658 | Msa1289420:CDS |
| TCTGCATTGTCTTGAACGTG+AGG | 0.635704 | 8_3:-43296615 | Msa1289420:CDS |
| GTTAGCAAGAATGTTGACAA+AGG | 0.636775 | 8_3:-43295044 | Msa1289420:CDS |
| TACCAAAACATATGAGAACA+AGG | 0.640732 | 8_3:-43296858 | Msa1289420:CDS |
| CACCAAAGAAATTGTCACGC+AGG | 0.641399 | 8_3:+43296816 | None:intergenic |
| GAAAAGAAGAACGTGTGGTG+AGG | 0.652176 | 8_3:-43295533 | Msa1289420:CDS |
| CAAAGGGAGGAAAATCAAAG+TGG | 0.657279 | 8_3:-43296161 | Msa1289420:CDS |
| TGGTGACGGTTCTATGAGGG+AGG | 0.661344 | 8_3:-43297080 | Msa1289420:CDS |
| AAAAGGAAAAGAAGAACGTG+TGG | 0.672916 | 8_3:-43295538 | Msa1289420:CDS |
| GGATAAGAACATAGACGGCG+AGG | 0.683636 | 8_3:-43295599 | Msa1289420:CDS |
| GCAGTTGTAACAGATGGTGA+CGG | 0.686599 | 8_3:-43297094 | Msa1289420:CDS |
| GTCCCAGTCCAATTGAACAG+TGG | 0.689907 | 8_3:-43295262 | Msa1289420:intron |
| AACAAGGTGCTGGTTGATGG+AGG | 0.696072 | 8_3:-43294642 | Msa1289420:CDS |
| AGGTGTTGCAATGAGTGTGG+AGG | 0.696599 | 8_3:-43296537 | Msa1289420:CDS |
| CATGCTAGCCAGAAAGACGT+GGG | 0.697336 | 8_3:-43295989 | Msa1289420:CDS |
| TTGTAAGAATGTTCAAACTG+TGG | 0.702002 | 8_3:-43296282 | Msa1289420:intron |
| GCGGGAGAAGGATCAAAGGG+AGG | 0.710234 | 8_3:-43296174 | Msa1289420:CDS |
| CAGATGAGTTGTCAGCACAG+GGG | 0.772263 | 8_3:+43296634 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAACAACATATATGA+GGG | + | chr8_3:43296184-43296203 | None:intergenic | 15.0% |
| !!! | ACATGGATAATTTTTTATTT+AGG | - | chr8_3:43296209-43296228 | Msa1289420:CDS | 15.0% |
| !! | ATTAAGTTTAAATTCAAACT+TGG | + | chr8_3:43296337-43296356 | None:intergenic | 15.0% |
| !! | ATATGATAAGAATTATATTG+AGG | + | chr8_3:43296744-43296763 | None:intergenic | 15.0% |
| !! | AAACAATAGAAACTTATATG+TGG | - | chr8_3:43294462-43294481 | Msa1289420:CDS | 20.0% |
| !! | AACAATAGAAACTTATATGT+GGG | - | chr8_3:43294463-43294482 | Msa1289420:CDS | 20.0% |
| !! | AAATCATAAAGAGTTATGTT+AGG | - | chr8_3:43294864-43294883 | Msa1289420:CDS | 20.0% |
| !!! | ATTTCTGTATAATTTTGATG+AGG | - | chr8_3:43294907-43294926 | Msa1289420:CDS | 20.0% |
| !! | CCTTCAACAAAAAAAAATAT+GGG | + | chr8_3:43295251-43295270 | None:intergenic | 20.0% |
| !! | TCCTTCAACAAAAAAAAATA+TGG | + | chr8_3:43295252-43295271 | None:intergenic | 20.0% |
| !! | AATATTTGATTATATTGCGT+TGG | - | chr8_3:43295295-43295314 | Msa1289420:intron | 20.0% |
| !! | AAATTGAGAAGTTAATCAAA+AGG | + | chr8_3:43295996-43296015 | None:intergenic | 20.0% |
| !!! | TTGATTAACTTCTCAATTTT+TGG | - | chr8_3:43295997-43296016 | Msa1289420:intron | 20.0% |
| !! | CTTAAAAAACAACATATATG+AGG | + | chr8_3:43296185-43296204 | None:intergenic | 20.0% |
| !!! | CTCATATATGTTGTTTTTTA+AGG | - | chr8_3:43296183-43296202 | Msa1289420:CDS | 20.0% |
| !!! | TGGATAATTTTTTATTTAGG+AGG | - | chr8_3:43296212-43296231 | Msa1289420:CDS | 20.0% |
| ! | TTTCATACAATCTAGAAAAC+TGG | + | chr8_3:43294495-43294514 | None:intergenic | 25.0% |
| !!! | TGTTAACAATTCAGCTTTTT+TGG | - | chr8_3:43294637-43294656 | Msa1289420:CDS | 25.0% |
| !! | AGCAATGTACTCTAATTTTA+CGG | - | chr8_3:43294673-43294692 | Msa1289420:CDS | 25.0% |
| !! | AGAAGAAATTTGAAGAGTTT+TGG | - | chr8_3:43294696-43294715 | Msa1289420:CDS | 25.0% |
| !! | GAAGAAATTTGAAGAGTTTT+GGG | - | chr8_3:43294697-43294716 | Msa1289420:CDS | 25.0% |
| !! | AAGAAATTTGAAGAGTTTTG+GGG | - | chr8_3:43294698-43294717 | Msa1289420:CDS | 25.0% |
| ! | GAAGTTGACAAAATATATTG+AGG | - | chr8_3:43295138-43295157 | Msa1289420:intron | 25.0% |
| ! | TTGACAAAATATATTGAGGA+AGG | - | chr8_3:43295142-43295161 | Msa1289420:intron | 25.0% |
| !!! | CCCATATTTTTTTTTGTTGA+AGG | - | chr8_3:43295248-43295267 | Msa1289420:CDS | 25.0% |
| ! | CGCAATATAATCAAATATTC+TGG | + | chr8_3:43295294-43295313 | None:intergenic | 25.0% |
| ! | CCTATATTTAAACACATTGT+TGG | + | chr8_3:43295936-43295955 | None:intergenic | 25.0% |
| ! | CCAACAATGTGTTTAAATAT+AGG | - | chr8_3:43295933-43295952 | Msa1289420:CDS | 25.0% |
| !!! | GTTGTTTTTTAAGGTTAACA+TGG | - | chr8_3:43296192-43296211 | Msa1289420:CDS | 25.0% |
| ! | GATATAACGTCATATTCAAT+CGG | + | chr8_3:43296775-43296794 | None:intergenic | 25.0% |
| ! | TAATGATGTTGGAATAAACA+AGG | - | chr8_3:43296963-43296982 | Msa1289420:CDS | 25.0% |
| !!! | ATCTTTTTCAAGAGAAAATG+TGG | + | chr8_3:43297024-43297043 | None:intergenic | 25.0% |
| !!! | AACAATTCAGCTTTTTTGGA+TGG | - | chr8_3:43294641-43294660 | Msa1289420:CDS | 30.0% |
| TACCAAAACATATGAGAACA+AGG | - | chr8_3:43294763-43294782 | Msa1289420:CDS | 30.0% | |
| ! | TTCCTTGTTCTCATATGTTT+TGG | + | chr8_3:43294768-43294787 | None:intergenic | 30.0% |
| ATATGAGAACAAGGAATTGT+GGG | - | chr8_3:43294772-43294791 | Msa1289420:CDS | 30.0% | |
| AAGAGTTATGTTAGGAAGAA+AGG | - | chr8_3:43294872-43294891 | Msa1289420:CDS | 30.0% | |
| GTGAAAGAAGAGATTATGAA+AGG | - | chr8_3:43295064-43295083 | Msa1289420:CDS | 30.0% | |
| CAAAAAAAAATATGGGAGCA+TGG | + | chr8_3:43295244-43295263 | None:intergenic | 30.0% | |
| TATATTGCGTTGGACAAAAA+AGG | - | chr8_3:43295305-43295324 | Msa1289420:intron | 30.0% | |
| TTGTAAGAATGTTCAAACTG+TGG | - | chr8_3:43295339-43295358 | Msa1289420:intron | 30.0% | |
| !!! | TTAACTTCTCAATTTTTGGC+AGG | - | chr8_3:43296001-43296020 | Msa1289420:intron | 30.0% |
| ATATATGAGGGCAAGAATAT+GGG | + | chr8_3:43296172-43296191 | None:intergenic | 30.0% | |
| AAGAAACATATGGTTTGAAG+AGG | - | chr8_3:43296449-43296468 | Msa1289420:CDS | 30.0% | |
| ATCCCATGACAAAAACTTAA+TGG | - | chr8_3:43296503-43296522 | Msa1289420:CDS | 30.0% | |
| TGACGTTATATCAGAAGTTA+CGG | - | chr8_3:43296783-43296802 | Msa1289420:CDS | 30.0% | |
| GGAAGATTTCATTGAAGAAA+TGG | - | chr8_3:43296813-43296832 | Msa1289420:CDS | 30.0% | |
| TGCTATTATGTGATGCATAA+TGG | - | chr8_3:43296853-43296872 | Msa1289420:CDS | 30.0% | |
| ATGCATAATGGTTATCTTGA+AGG | - | chr8_3:43296865-43296884 | Msa1289420:CDS | 30.0% | |
| !! | ATTTTAGCCTGGATAAACAA+AGG | + | chr8_3:43296943-43296962 | None:intergenic | 30.0% |
| !! | CAACATCATTAATTTTAGCC+TGG | + | chr8_3:43296954-43296973 | None:intergenic | 30.0% |
| CAGGCTAAAATTAATGATGT+TGG | - | chr8_3:43296952-43296971 | Msa1289420:CDS | 30.0% | |
| TAGTTGCAAAGAACTACATT+AGG | + | chr8_3:43297075-43297094 | None:intergenic | 30.0% | |
| !!! | TCATATGTTTTGGTAACCCA+GGG | + | chr8_3:43294758-43294777 | None:intergenic | 35.0% |
| CATATGAGAACAAGGAATTG+TGG | - | chr8_3:43294771-43294790 | Msa1289420:CDS | 35.0% | |
| !! | AATTTTGATGAGGCAATGAG+AGG | - | chr8_3:43294917-43294936 | Msa1289420:CDS | 35.0% |
| CAAGAAATTTGAATCTCGAG+AGG | - | chr8_3:43295216-43295235 | Msa1289420:CDS | 35.0% | |
| GCATGATAGCCAAAAAAATG+CGG | - | chr8_3:43295428-43295447 | Msa1289420:intron | 35.0% | |
| CATGATAGCCAAAAAAATGC+GGG | - | chr8_3:43295429-43295448 | Msa1289420:intron | 35.0% | |
| GGTACTTACGTTCATATTCA+CGG | + | chr8_3:43295915-43295934 | None:intergenic | 35.0% | |
| !!! | TTTCCTTTTCTGTGCTACTT+TGG | + | chr8_3:43296072-43296091 | None:intergenic | 35.0% |
| AAAAGGAAAAGAAGAACGTG+TGG | - | chr8_3:43296083-43296102 | Msa1289420:intron | 35.0% | |
| CATATATGAGGGCAAGAATA+TGG | + | chr8_3:43296173-43296192 | None:intergenic | 35.0% | |
| ACTCTGTCATCTTTGTTAGA+TGG | + | chr8_3:43296294-43296313 | None:intergenic | 35.0% | |
| GTTTCTTCTCTCTTCTGATT+AGG | + | chr8_3:43296436-43296455 | None:intergenic | 35.0% | |
| CAGAAGAGAGAAGAAACATA+TGG | - | chr8_3:43296439-43296458 | Msa1289420:CDS | 35.0% | |
| TCCATAACGTCAACTACAAA+GGG | - | chr8_3:43296476-43296495 | Msa1289420:CDS | 35.0% | |
| ! | CGCCATTAAGTTTTTGTCAT+GGG | + | chr8_3:43296508-43296527 | None:intergenic | 35.0% |
| ! | ACGCCATTAAGTTTTTGTCA+TGG | + | chr8_3:43296509-43296528 | None:intergenic | 35.0% |
| GTTAGCAAGAATGTTGACAA+AGG | - | chr8_3:43296577-43296596 | Msa1289420:CDS | 35.0% | |
| TATCGAAGATAGTTGGTTGT+TGG | + | chr8_3:43296609-43296628 | None:intergenic | 35.0% | |
| ACCTTTCTTCACAACTGAAA+GGG | + | chr8_3:43296668-43296687 | None:intergenic | 35.0% | |
| TGCATCACATAATAGCACTT+TGG | + | chr8_3:43296850-43296869 | None:intergenic | 35.0% | |
| TGGTTATCTTGAAGGAAATC+AGG | - | chr8_3:43296873-43296892 | Msa1289420:CDS | 35.0% | |
| TGGATAAACAAAGGTTTGAG+AGG | + | chr8_3:43296934-43296953 | None:intergenic | 35.0% | |
| ! | TCTCAAACCTTTGTTTATCC+AGG | - | chr8_3:43296933-43296952 | Msa1289420:CDS | 35.0% |
| TTGCAAAGAACTACATTAGG+TGG | + | chr8_3:43297072-43297091 | None:intergenic | 35.0% | |
| TAGTTCTTTGCAACTACGAA+GGG | - | chr8_3:43297079-43297098 | Msa1289420:CDS | 35.0% | |
| ! | CCATCTGTTACAACTGCTTT+TGG | + | chr8_3:43294524-43294543 | None:intergenic | 40.0% |
| CCAAAAGCAGTTGTAACAGA+TGG | - | chr8_3:43294521-43294540 | Msa1289420:CDS | 40.0% | |
| !!! | CTCATATGTTTTGGTAACCC+AGG | + | chr8_3:43294759-43294778 | None:intergenic | 40.0% |
| TACCTGCGTGACAATTTCTT+TGG | - | chr8_3:43294803-43294822 | Msa1289420:CDS | 40.0% | |
| TGAGGCTGCTGAAATCTATA+CGG | - | chr8_3:43295024-43295043 | Msa1289420:CDS | 40.0% | |
| TGTGGAGGAAAAAGAAGTGA+AGG | - | chr8_3:43295099-43295118 | Msa1289420:intron | 40.0% | |
| GTGGAGGAAAAAGAAGTGAA+GGG | - | chr8_3:43295100-43295119 | Msa1289420:intron | 40.0% | |
| ! | AGTGCTTGCAGAACATTTTC+TGG | + | chr8_3:43295382-43295401 | None:intergenic | 40.0% |
| TGGCTATCATGCTGAGATAT+GGG | + | chr8_3:43295420-43295439 | None:intergenic | 40.0% | |
| TTGGCTATCATGCTGAGATA+TGG | + | chr8_3:43295421-43295440 | None:intergenic | 40.0% | |
| !!! | ATCCTTCTCCCGCATTTTTT+TGG | + | chr8_3:43295440-43295459 | None:intergenic | 40.0% |
| CAAAGGGAGGAAAATCAAAG+TGG | - | chr8_3:43295460-43295479 | Msa1289420:intron | 40.0% | |
| ! | ATCCTTCTGCCATGTCTTTT+TGG | + | chr8_3:43295542-43295561 | None:intergenic | 40.0% |
| TCATGCTAGCCAAAAAAACG+TGG | - | chr8_3:43295733-43295752 | Msa1289420:intron | 40.0% | |
| CATGCTAGCCAAAAAAACGT+GGG | - | chr8_3:43295734-43295753 | Msa1289420:intron | 40.0% | |
| !!! | ATCCTTCTCCCACGTTTTTT+TGG | + | chr8_3:43295745-43295764 | None:intergenic | 40.0% |
| ! | ATCCTTCTACCACGTCTTTT+TGG | + | chr8_3:43295847-43295866 | None:intergenic | 40.0% |
| AGACGTGGTAGAAGGATTAA+AGG | - | chr8_3:43295850-43295869 | Msa1289420:CDS | 40.0% | |
| GACGTGGTAGAAGGATTAAA+GGG | - | chr8_3:43295851-43295870 | Msa1289420:CDS | 40.0% | |
| AAAGGGATGTAGTTAAAGCG+AGG | - | chr8_3:43295868-43295887 | Msa1289420:CDS | 40.0% | |
| TAGTTAAAGCGAGGTTGTCA+AGG | - | chr8_3:43295877-43295896 | Msa1289420:CDS | 40.0% | |
| TGGCAGGATAAGAACATAGA+CGG | - | chr8_3:43296017-43296036 | Msa1289420:intron | 40.0% | |
| AAGCCAAAGTAGCACAGAAA+AGG | - | chr8_3:43296066-43296085 | Msa1289420:intron | 40.0% | |
| ATTGTTCATTGTCGCGACTT+TGG | + | chr8_3:43296238-43296257 | None:intergenic | 40.0% | |
| !! | GAAAGTACCCACTGTTCAAT+TGG | + | chr8_3:43296370-43296389 | None:intergenic | 40.0% |
| ATTGAACAGTGGGTACTTTC+TGG | - | chr8_3:43296370-43296389 | Msa1289420:intron | 40.0% | |
| GGAAAGAGAACTACTGGAAA+TGG | - | chr8_3:43296394-43296413 | Msa1289420:intron | 40.0% | |
| GTCCATAACGTCAACTACAA+AGG | - | chr8_3:43296475-43296494 | Msa1289420:CDS | 40.0% | |
| TCCCTTTGTAGTTGACGTTA+TGG | + | chr8_3:43296480-43296499 | None:intergenic | 40.0% | |
| TAGATTCCAGCGTCAGAAAA+AGG | - | chr8_3:43296528-43296547 | Msa1289420:CDS | 40.0% | |
| !! | AAAGGTCGATGCTTTGAAAG+AGG | - | chr8_3:43296546-43296565 | Msa1289420:CDS | 40.0% |
| CTAAGCGTATCGAAGATAGT+TGG | + | chr8_3:43296616-43296635 | None:intergenic | 40.0% | |
| CCTTTCTTCACAACTGAAAG+GGG | + | chr8_3:43296667-43296686 | None:intergenic | 40.0% | |
| GACCTTTCTTCACAACTGAA+AGG | + | chr8_3:43296669-43296688 | None:intergenic | 40.0% | |
| !! | ATTGAGGCTAGCTTCAGAAT+CGG | + | chr8_3:43296728-43296747 | None:intergenic | 40.0% |
| ATCAGAAGTTACGGAAGATG+AGG | - | chr8_3:43296792-43296811 | Msa1289420:CDS | 40.0% | |
| TCACATAATAGCACTTTGGC+TGG | + | chr8_3:43296846-43296865 | None:intergenic | 40.0% | |
| TGTTGGAATAAACAAGGTGC+TGG | - | chr8_3:43296969-43296988 | Msa1289420:CDS | 40.0% | |
| !! | ATAAACAAGGTGCTGGTTGA+TGG | - | chr8_3:43296976-43296995 | Msa1289420:CDS | 40.0% |
| GTAGTTCTTTGCAACTACGA+AGG | - | chr8_3:43297078-43297097 | Msa1289420:CDS | 40.0% | |
| GGGAAATCTGGAAATTCCTT+TGG | - | chr8_3:43297099-43297118 | Msa1289420:CDS | 40.0% | |
| AGTTGACCTGGTGATAGAAA+AGG | - | chr8_3:43297131-43297150 | Msa1289420:CDS | 40.0% | |
| ! | GAAAAGGCCGACTTTATTCT+TGG | - | chr8_3:43297147-43297166 | Msa1289420:CDS | 40.0% |
| TCCACTGCCAAGAATAAAGT+CGG | + | chr8_3:43297157-43297176 | None:intergenic | 40.0% | |
| ATTCTTGGCAGTGGAATCAA+AGG | - | chr8_3:43297162-43297181 | Msa1289420:CDS | 40.0% | |
| GCAGTTGTAACAGATGGTGA+CGG | - | chr8_3:43294527-43294546 | Msa1289420:CDS | 45.0% | |
| !! | AGATGGTGACGGTTCTATGA+GGG | - | chr8_3:43294538-43294557 | Msa1289420:CDS | 45.0% |
| TTCTATGAGGGAGGCGATAA+AGG | - | chr8_3:43294550-43294569 | Msa1289420:CDS | 45.0% | |
| !!! | TGAAGAGTTTTGGGGTGACT+TGG | - | chr8_3:43294706-43294725 | Msa1289420:CDS | 45.0% |
| TAACCCAGGGATTGTTCTCA+AGG | + | chr8_3:43294745-43294764 | None:intergenic | 45.0% | |
| CACCAAAGAAATTGTCACGC+AGG | + | chr8_3:43294808-43294827 | None:intergenic | 45.0% | |
| CTGCGTGACAATTTCTTTGG+TGG | - | chr8_3:43294806-43294825 | Msa1289420:CDS | 45.0% | |
| TCTGCATTGTCTTGAACGTG+AGG | - | chr8_3:43295006-43295025 | Msa1289420:CDS | 45.0% | |
| !! | GAAAGGTGTTGCAATGAGTG+TGG | - | chr8_3:43295081-43295100 | Msa1289420:CDS | 45.0% |
| AGCCAAAAAAATGCGGGAGA+AGG | - | chr8_3:43295435-43295454 | Msa1289420:intron | 45.0% | |
| AAATGCGGGAGAAGGATCAA+AGG | - | chr8_3:43295443-43295462 | Msa1289420:intron | 45.0% | |
| AATGCGGGAGAAGGATCAAA+GGG | - | chr8_3:43295444-43295463 | Msa1289420:intron | 45.0% | |
| ! | TGGCTAGCAGGTTGAGATTT+GGG | + | chr8_3:43295522-43295541 | None:intergenic | 45.0% |
| ! | TTGGCTAGCAGGTTGAGATT+TGG | + | chr8_3:43295523-43295542 | None:intergenic | 45.0% |
| ACCTGCTAGCCAAAAAGACA+TGG | - | chr8_3:43295530-43295549 | Msa1289420:CDS | 45.0% | |
| AGCCAAAAAGACATGGCAGA+AGG | - | chr8_3:43295537-43295556 | Msa1289420:CDS | 45.0% | |
| ATGGCAGAAGGATCAAAGAG+AGG | - | chr8_3:43295549-43295568 | Msa1289420:CDS | 45.0% | |
| ! | ATCCTTTTCCCACGTCTTTC+TGG | + | chr8_3:43295643-43295662 | None:intergenic | 45.0% |
| TTGGCTAGCATGATGAGACA+TGG | + | chr8_3:43295726-43295745 | None:intergenic | 45.0% | |
| AGCCAAAAAAACGTGGGAGA+AGG | - | chr8_3:43295740-43295759 | Msa1289420:intron | 45.0% | |
| TGCCAAAAAGACGTGGTAGA+AGG | - | chr8_3:43295842-43295861 | Msa1289420:CDS | 45.0% | |
| !! | TGTGCTACTTTGGCTTGTTC+AGG | + | chr8_3:43296062-43296081 | None:intergenic | 45.0% |
| GAAAAGAAGAACGTGTGGTG+AGG | - | chr8_3:43296088-43296107 | Msa1289420:intron | 45.0% | |
| ! | TAGGGCATCATGGAGACTAA+TGG | - | chr8_3:43296118-43296137 | Msa1289420:intron | 45.0% |
| TCCCAGTCCAATTGAACAGT+GGG | - | chr8_3:43296360-43296379 | Msa1289420:intron | 45.0% | |
| ACCCACTGTTCAATTGGACT+GGG | + | chr8_3:43296364-43296383 | None:intergenic | 45.0% | |
| TACCCACTGTTCAATTGGAC+TGG | + | chr8_3:43296365-43296384 | None:intergenic | 45.0% | |
| TCTGGTGGAAAGAGAACTAC+TGG | - | chr8_3:43296388-43296407 | Msa1289420:intron | 45.0% | |
| TTCTTCACAACTGAAAGGGG+AGG | + | chr8_3:43296664-43296683 | None:intergenic | 45.0% | |
| CCCCTTTCAGTTGTGAAGAA+AGG | - | chr8_3:43296664-43296683 | Msa1289420:CDS | 45.0% | |
| GGATGTTGCATGTGATGATC+AGG | + | chr8_3:43296913-43296932 | None:intergenic | 45.0% | |
| TGCAACTACGAAGGGAAATC+TGG | - | chr8_3:43297087-43297106 | Msa1289420:CDS | 45.0% | |
| GTCAACTTCAACAGCACCAA+AGG | + | chr8_3:43297118-43297137 | None:intergenic | 45.0% | |
| !! | CAGATGGTGACGGTTCTATG+AGG | - | chr8_3:43294537-43294556 | Msa1289420:CDS | 50.0% |
| CATAGACGATGACGCGTACT+TGG | + | chr8_3:43294584-43294603 | None:intergenic | 50.0% | |
| !!! | AGTTTTGGGGTGACTTGGTG+AGG | - | chr8_3:43294711-43294730 | Msa1289420:CDS | 50.0% |
| !!! | GTTTTGGGGTGACTTGGTGA+GGG | - | chr8_3:43294712-43294731 | Msa1289420:CDS | 50.0% |
| !! | GGTGACTTGGTGAGGGAAAA+TGG | - | chr8_3:43294719-43294738 | Msa1289420:CDS | 50.0% |
| ! | ATGGCCTTGAGAACAATCCC+TGG | - | chr8_3:43294738-43294757 | Msa1289420:CDS | 50.0% |
| ! | TGGCCTTGAGAACAATCCCT+GGG | - | chr8_3:43294739-43294758 | Msa1289420:CDS | 50.0% |
| CAGCACAGGGGATGAAAACT+TGG | + | chr8_3:43294978-43294997 | None:intergenic | 50.0% | |
| CAGATGAGTTGTCAGCACAG+GGG | + | chr8_3:43294990-43295009 | None:intergenic | 50.0% | |
| GCAGATGAGTTGTCAGCACA+GGG | + | chr8_3:43294991-43295010 | None:intergenic | 50.0% | |
| TGCAGATGAGTTGTCAGCAC+AGG | + | chr8_3:43294992-43295011 | None:intergenic | 50.0% | |
| ! | AGGTGTTGCAATGAGTGTGG+AGG | - | chr8_3:43295084-43295103 | Msa1289420:CDS | 50.0% |
| !!! | GCCATGTCTTTTTGGCTAGC+AGG | + | chr8_3:43295534-43295553 | None:intergenic | 50.0% |
| TGGCTAGCATGCTGAGACAT+GGG | + | chr8_3:43295623-43295642 | None:intergenic | 50.0% | |
| CATGCTAGCCAGAAAGACGT+GGG | - | chr8_3:43295632-43295651 | Msa1289420:intron | 50.0% | |
| AGCCAGAAAGACGTGGGAAA+AGG | - | chr8_3:43295638-43295657 | Msa1289420:intron | 50.0% | |
| GAGTGCTTGCCAAAAAGACG+TGG | - | chr8_3:43295835-43295854 | Msa1289420:CDS | 50.0% | |
| GGATAAGAACATAGACGGCG+AGG | - | chr8_3:43296022-43296041 | Msa1289420:intron | 50.0% | |
| AGTCTCCATGATGCCCTAAC+AGG | + | chr8_3:43296116-43296135 | None:intergenic | 50.0% | |
| GTCCCAGTCCAATTGAACAG+TGG | - | chr8_3:43296359-43296378 | Msa1289420:intron | 50.0% | |
| GAACAGTGGGTACTTTCTGG+TGG | - | chr8_3:43296373-43296392 | Msa1289420:intron | 50.0% | |
| ! | CATCGACCTTTTTCTGACGC+TGG | + | chr8_3:43296537-43296556 | None:intergenic | 50.0% |
| GGAAAGATGCTCATAGTGGC+AGG | + | chr8_3:43296643-43296662 | None:intergenic | 50.0% | |
| GGGAGGAAAGATGCTCATAG+TGG | + | chr8_3:43296647-43296666 | None:intergenic | 50.0% | |
| !! | AACAAGGTGCTGGTTGATGG+AGG | - | chr8_3:43296979-43296998 | Msa1289420:CDS | 50.0% |
| !! | TGGTGCTGTTGAAGTTGACC+TGG | - | chr8_3:43297119-43297138 | Msa1289420:CDS | 50.0% |
| ! | AGTCGGCCTTTTCTATCACC+AGG | + | chr8_3:43297140-43297159 | None:intergenic | 50.0% |
| ! | GCCGACTTTATTCTTGGCAG+TGG | - | chr8_3:43297153-43297172 | Msa1289420:CDS | 50.0% |
| !! | TGGTGACGGTTCTATGAGGG+AGG | - | chr8_3:43294541-43294560 | Msa1289420:CDS | 55.0% |
| CGCGTCATCGTCTATGTGCT+TGG | - | chr8_3:43294588-43294607 | Msa1289420:CDS | 55.0% | |
| CTGGCTAGCATGCTGAGACA+TGG | + | chr8_3:43295624-43295643 | None:intergenic | 55.0% | |
| GCATGCTAGCCAGAAAGACG+TGG | - | chr8_3:43295631-43295650 | Msa1289420:intron | 55.0% | |
| ! | GTGTGGTGAGGCACCTGTTA+GGG | - | chr8_3:43296100-43296119 | Msa1289420:intron | 55.0% |
| ! | AGGCACCTGTTAGGGCATCA+TGG | - | chr8_3:43296108-43296127 | Msa1289420:intron | 55.0% |
| GCGGGAGAAGGATCAAAGGG+AGG | - | chr8_3:43295447-43295466 | Msa1289420:intron | 60.0% | |
| ! | CGTGTGGTGAGGCACCTGTT+AGG | - | chr8_3:43296099-43296118 | Msa1289420:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 43294455 | 43297188 | 43294455 | ID=Msa1289420;Name=Msa1289420 |
| chr8_3 | mRNA | 43294455 | 43297188 | 43294455 | ID=Msa1289420-mRNA-1;Parent=Msa1289420;Name=Msa1289420-mRNA-1;_AED=0.77;_eAED=0.78;_QI=0|0|0|0.14|1|1|7|0|695 |
| chr8_3 | exon | 43296406 | 43297188 | 43296406 | ID=Msa1289420-mRNA-1:exon:11882;Parent=Msa1289420-mRNA-1 |
| chr8_3 | exon | 43296154 | 43296297 | 43296154 | ID=Msa1289420-mRNA-1:exon:11881;Parent=Msa1289420-mRNA-1 |
| chr8_3 | exon | 43295787 | 43296011 | 43295787 | ID=Msa1289420-mRNA-1:exon:11880;Parent=Msa1289420-mRNA-1 |
| chr8_3 | exon | 43295495 | 43295620 | 43295495 | ID=Msa1289420-mRNA-1:exon:11879;Parent=Msa1289420-mRNA-1 |
| chr8_3 | exon | 43295366 | 43295412 | 43295366 | ID=Msa1289420-mRNA-1:exon:11878;Parent=Msa1289420-mRNA-1 |
| chr8_3 | exon | 43295173 | 43295277 | 43295173 | ID=Msa1289420-mRNA-1:exon:11877;Parent=Msa1289420-mRNA-1 |
| chr8_3 | exon | 43294455 | 43295112 | 43294455 | ID=Msa1289420-mRNA-1:exon:11876;Parent=Msa1289420-mRNA-1 |
| chr8_3 | CDS | 43296406 | 43297188 | 43296406 | ID=Msa1289420-mRNA-1:cds;Parent=Msa1289420-mRNA-1 |
| chr8_3 | CDS | 43296154 | 43296297 | 43296154 | ID=Msa1289420-mRNA-1:cds;Parent=Msa1289420-mRNA-1 |
| chr8_3 | CDS | 43295787 | 43296011 | 43295787 | ID=Msa1289420-mRNA-1:cds;Parent=Msa1289420-mRNA-1 |
| chr8_3 | CDS | 43295495 | 43295620 | 43295495 | ID=Msa1289420-mRNA-1:cds;Parent=Msa1289420-mRNA-1 |
| chr8_3 | CDS | 43295366 | 43295412 | 43295366 | ID=Msa1289420-mRNA-1:cds;Parent=Msa1289420-mRNA-1 |
| chr8_3 | CDS | 43295173 | 43295277 | 43295173 | ID=Msa1289420-mRNA-1:cds;Parent=Msa1289420-mRNA-1 |
| chr8_3 | CDS | 43294455 | 43295112 | 43294455 | ID=Msa1289420-mRNA-1:cds;Parent=Msa1289420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
