Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924360 | XP_003620393.1 | 93.333 | 240 | 9 | 1 | 1 | 240 | 1 | 233 | 4.48e-153 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924360 | sp|F4JDJ0|HIP47_ARATH | 45.570 | 79 | 42 | 1 | 5 | 83 | 1 | 78 | 1.13e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031650 | Msa0924360 | 0.811382 | 7.200092e-51 | -8.615850e-47 |
| Msa0048950 | Msa0924360 | 0.813091 | 3.050568e-51 | -8.615850e-47 |
| Msa0670360 | Msa0924360 | 0.803326 | 3.676719e-49 | -8.615850e-47 |
| Msa0684720 | Msa0924360 | 0.804687 | 1.916375e-49 | -8.615850e-47 |
| Msa0824860 | Msa0924360 | 0.806816 | 6.845870e-50 | -8.615850e-47 |
| Msa0170990 | Msa0924360 | 0.801187 | 1.013506e-48 | -8.615850e-47 |
| Msa0171740 | Msa0924360 | 0.805304 | 1.424242e-49 | -8.615850e-47 |
| Msa0396700 | Msa0924360 | 0.808777 | 2.621039e-50 | -8.615850e-47 |
| Msa0469550 | Msa0924360 | 0.801740 | 7.807448e-49 | -8.615850e-47 |
| Msa0298270 | Msa0924360 | 0.801255 | 9.813385e-49 | -8.615850e-47 |
| Msa0336640 | Msa0924360 | 0.818754 | 1.662004e-52 | -8.615850e-47 |
| Msa0491800 | Msa0924360 | 0.817264 | 3.609488e-52 | -8.615850e-47 |
| Msa0515260 | Msa0924360 | 0.802572 | 5.263698e-49 | -8.615850e-47 |
| Msa0531040 | Msa0924360 | 0.821177 | 4.637633e-53 | -8.615850e-47 |
| Msa0535570 | Msa0924360 | 0.821482 | 3.945018e-53 | -8.615850e-47 |
| Msa0548970 | Msa0924360 | 0.801684 | 8.014986e-49 | -8.615850e-47 |
| Msa0587930 | Msa0924360 | 0.832122 | 1.131643e-55 | -8.615850e-47 |
| Msa0597820 | Msa0924360 | 0.800909 | 1.155008e-48 | -8.615850e-47 |
| Msa0863840 | Msa0924360 | 0.807675 | 4.501820e-50 | -8.615850e-47 |
| Msa0883640 | Msa0924360 | 0.804129 | 2.504809e-49 | -8.615850e-47 |
| Msa0897730 | Msa0924360 | 0.867021 | 1.859822e-65 | -8.615850e-47 |
| Msa0910590 | Msa0924360 | 0.803224 | 3.861317e-49 | -8.615850e-47 |
| Msa0913500 | Msa0924360 | 0.815407 | 9.392202e-52 | -8.615850e-47 |
| Msa0924360 | Msa0951060 | 0.829990 | 3.777083e-55 | -8.615850e-47 |
| Msa0924360 | Msa0960090 | 0.804424 | 2.174623e-49 | -8.615850e-47 |
| Msa0924360 | Msa0963320 | 0.805697 | 1.177886e-49 | -8.615850e-47 |
| Msa0924360 | Msa0985700 | 0.806094 | 9.721082e-50 | -8.615850e-47 |
| Msa0924360 | Msa1040330 | 0.811072 | 8.405476e-51 | -8.615850e-47 |
| Msa0924360 | Msa1061670 | 0.821400 | 4.118898e-53 | -8.615850e-47 |
| Msa0924360 | Msa1083100 | 0.826089 | 3.285370e-54 | -8.615850e-47 |
| Msa0924360 | Msa1106960 | 0.819430 | 1.166445e-52 | -8.615850e-47 |
| Msa0924360 | Msa1256300 | 0.832368 | 9.838746e-56 | -8.615850e-47 |
| Msa0924360 | Msa1323160 | 0.800770 | 1.233429e-48 | -8.615850e-47 |
| Msa0924360 | Msa1357490 | 0.805259 | 1.455238e-49 | -8.615850e-47 |
| Msa0924360 | Msa1378950 | 0.807114 | 5.920283e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924360 | MtrunA17_Chr6g0483581 | 93.333 | 240 | 9 | 1 | 1 | 240 | 1 | 233 | 4.12e-157 | 435 |
| Msa0924360 | MtrunA17_Chr6g0483561 | 90.833 | 240 | 15 | 1 | 1 | 240 | 1 | 233 | 1.70e-120 | 342 |
| Msa0924360 | MtrunA17_Chr6g0483521 | 66.122 | 245 | 56 | 8 | 1 | 240 | 1 | 223 | 1.95e-64 | 199 |
| Msa0924360 | MtrunA17_Chr6g0483511 | 58.333 | 216 | 54 | 5 | 1 | 215 | 1 | 181 | 1.10e-63 | 196 |
| Msa0924360 | MtrunA17_Chr5g0438551 | 51.087 | 92 | 42 | 2 | 3 | 91 | 2 | 93 | 3.97e-21 | 85.9 |
| Msa0924360 | MtrunA17_Chr2g0290831 | 50.667 | 75 | 37 | 0 | 1 | 75 | 1 | 75 | 4.74e-17 | 73.6 |
| Msa0924360 | MtrunA17_Chr3g0120551 | 42.667 | 75 | 43 | 0 | 2 | 76 | 3 | 77 | 6.51e-15 | 68.9 |
| Msa0924360 | MtrunA17_Chr3g0120541 | 42.353 | 85 | 46 | 1 | 2 | 86 | 3 | 84 | 1.04e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924360 | AT3G20180.3 | 48.193 | 83 | 42 | 1 | 1 | 83 | 1 | 82 | 2.00e-17 | 76.3 |
| Msa0924360 | AT3G20180.2 | 45.783 | 83 | 44 | 1 | 1 | 83 | 20 | 101 | 3.43e-16 | 73.6 |
| Msa0924360 | AT4G05030.2 | 45.946 | 74 | 40 | 0 | 1 | 74 | 1 | 74 | 8.27e-16 | 70.5 |
| Msa0924360 | AT3G20180.4 | 46.250 | 80 | 42 | 1 | 4 | 83 | 2 | 80 | 3.03e-15 | 70.1 |
| Msa0924360 | AT4G05030.1 | 46.479 | 71 | 38 | 0 | 4 | 74 | 37 | 107 | 4.64e-15 | 69.3 |
| Msa0924360 | AT3G20180.1 | 45.570 | 79 | 42 | 1 | 5 | 83 | 1 | 78 | 1.15e-14 | 68.6 |
| Msa0924360 | AT3G07600.1 | 42.529 | 87 | 50 | 0 | 1 | 87 | 1 | 87 | 7.68e-13 | 64.7 |
| Msa0924360 | AT5G48290.1 | 38.298 | 94 | 53 | 1 | 1 | 94 | 1 | 89 | 5.82e-12 | 62.8 |
Find 52 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATATGGAGCGTAGCATTT+AGG | 0.197418 | 6_2:+66246207 | None:intergenic |
| CACCTCTTCCACACTAAGTA+TGG | 0.264758 | 6_2:+66246623 | None:intergenic |
| GTAGGTGTAGGAGGCTTCTT+AGG | 0.298324 | 6_2:+66246303 | None:intergenic |
| ACCAGATGCAGAAAAGAAAA+AGG | 0.299032 | 6_2:-66246592 | Msa0924360:CDS |
| TCATAAACAACCTTACAATA+AGG | 0.334241 | 6_2:+66246153 | None:intergenic |
| CCCTTATCCACCTTATTGTA+AGG | 0.360745 | 6_2:-66246163 | Msa0924360:CDS |
| GATATGGAGCGTAGCATTTA+GGG | 0.368487 | 6_2:+66246208 | None:intergenic |
| CAAGGTGGATAAGGTCGATA+TGG | 0.371321 | 6_2:+66246192 | None:intergenic |
| ACCTTACAATAAGGTGGATA+AGG | 0.398003 | 6_2:+66246162 | None:intergenic |
| AGGTGTAACTTCAGTATCAT+TGG | 0.406476 | 6_2:-66246739 | Msa0924360:CDS |
| CACATGATGGAGCAAGTCTC+GGG | 0.415773 | 6_2:+66246123 | None:intergenic |
| TATTGAACTTCTTCTTTAGC+TGG | 0.426776 | 6_2:+66246652 | None:intergenic |
| AAAGTGTGATGGTAAGTGTA+AGG | 0.433385 | 6_2:-66246382 | Msa0924360:CDS |
| GGAGGCTTCTTAGGAGGTGC+AGG | 0.451480 | 6_2:+66246312 | None:intergenic |
| GGGTTAGAACAAGGTGGATA+AGG | 0.458184 | 6_2:+66246183 | None:intergenic |
| AATGGTTATAAAGATGCAAA+TGG | 0.470303 | 6_2:-66248438 | Msa0924360:CDS |
| CCTTACAATAAGGTGGATAA+GGG | 0.481422 | 6_2:+66246163 | None:intergenic |
| CATTGTTGGATGGGTGGTGA+AGG | 0.488818 | 6_2:+66246249 | None:intergenic |
| TTCTTCTGAGGAGGTGTAGG+AGG | 0.505145 | 6_2:+66246273 | None:intergenic |
| TGCACCATTGAGGACATTGT+TGG | 0.507565 | 6_2:+66246235 | None:intergenic |
| CACCATACTTAGTGTGGAAG+AGG | 0.508517 | 6_2:-66246625 | Msa0924360:CDS |
| GGCTTCTCAGTAGGTGTAGG+AGG | 0.515844 | 6_2:+66246294 | None:intergenic |
| TGTCACGACTTGAGTTGTAA+TGG | 0.519079 | 6_2:-66246489 | Msa0924360:CDS |
| GGATTCTTCTGAGGAGGTGT+AGG | 0.532987 | 6_2:+66246270 | None:intergenic |
| TCACATGATGGAGCAAGTCT+CGG | 0.533242 | 6_2:+66246122 | None:intergenic |
| GGTGTAGGAGGCTTCTCAGT+AGG | 0.538901 | 6_2:+66246285 | None:intergenic |
| CCATCCAACAATGTCCTCAA+TGG | 0.539149 | 6_2:-66246239 | Msa0924360:CDS |
| GGAGGCTTCTCAGTAGGTGT+AGG | 0.547951 | 6_2:+66246291 | None:intergenic |
| CATTGAGGACATTGTTGGAT+GGG | 0.558013 | 6_2:+66246240 | None:intergenic |
| TCAAAATTAAGCAAGCATGA+AGG | 0.560798 | 6_2:-66248556 | Msa0924360:intron |
| CCATTGAGGACATTGTTGGA+TGG | 0.560801 | 6_2:+66246239 | None:intergenic |
| AAGTGTGATGGTAAGTGTAA+GGG | 0.566876 | 6_2:-66246381 | Msa0924360:CDS |
| AGCCCTCAAAACTGCTGCTG+AGG | 0.567072 | 6_2:-66248393 | Msa0924360:CDS |
| TTAGGGCATGTGCACCATTG+AGG | 0.567668 | 6_2:+66246225 | None:intergenic |
| GGTGAAGGATTCTTCTGAGG+AGG | 0.569735 | 6_2:+66246264 | None:intergenic |
| GGTGTAGGAGGCTTCTTAGG+AGG | 0.582175 | 6_2:+66246306 | None:intergenic |
| AAAACTGCTGCTGAGGTCCA+AGG | 0.586097 | 6_2:-66248386 | Msa0924360:intron |
| ATGTGTGATCGGTGATGATG+TGG | 0.589300 | 6_2:-66246694 | Msa0924360:CDS |
| TAAACAACCTTACAATAAGG+TGG | 0.594529 | 6_2:+66246156 | None:intergenic |
| TAGTGTCACCATACTTAGTG+TGG | 0.597875 | 6_2:-66246631 | Msa0924360:CDS |
| GTAACTTCAGTATCATTGGA+AGG | 0.606718 | 6_2:-66246735 | Msa0924360:CDS |
| TGAGGACATTGTTGGATGGG+TGG | 0.615195 | 6_2:+66246243 | None:intergenic |
| GGTGGATAAGGGTTAGAACA+AGG | 0.617288 | 6_2:+66246174 | None:intergenic |
| GGATAAGGGTTAGAACAAGG+TGG | 0.619498 | 6_2:+66246177 | None:intergenic |
| TGTGAAAGTCTAAAATGTGA+TGG | 0.629705 | 6_2:-66246444 | Msa0924360:CDS |
| AAGGATAGTATATGTGTGAT+CGG | 0.630620 | 6_2:-66246705 | Msa0924360:CDS |
| TGTGAAGATTCAAAGTGTGA+TGG | 0.647633 | 6_2:-66246393 | Msa0924360:CDS |
| GGTGGTGAAGGATTCTTCTG+AGG | 0.647882 | 6_2:+66246261 | None:intergenic |
| ATCATTGGAAGGAAATGACA+AGG | 0.661902 | 6_2:-66246724 | Msa0924360:CDS |
| GTAGGTATGATGTCACATGA+TGG | 0.671048 | 6_2:+66246110 | None:intergenic |
| TGTGACAACAAGAAGTGTGA+TGG | 0.671842 | 6_2:-66246345 | Msa0924360:CDS |
| ACATGATGGAGCAAGTCTCG+GGG | 0.673679 | 6_2:+66246124 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAAATAAATAA+AGG | + | chr6_2:66246688-66246707 | None:intergenic | 0.0% |
| !!! | TTTTTTAAAAATTAATTTTA+CGG | + | chr6_2:66247150-66247169 | None:intergenic | 0.0% |
| !!! | TTTTTAAATTGTTGTATTAA+GGG | + | chr6_2:66246433-66246452 | None:intergenic | 10.0% |
| !!! | AAAATTCAAATTTGTTTATA+TGG | - | chr6_2:66246605-66246624 | Msa0924360:CDS | 10.0% |
| !!! | AATTCTTATATTATTTTGAT+TGG | + | chr6_2:66247054-66247073 | None:intergenic | 10.0% |
| !!! | ATTTTAAATTTTCAAGATTT+TGG | + | chr6_2:66247083-66247102 | None:intergenic | 10.0% |
| !!! | ATTTTATAGTTTGATTTTAA+TGG | - | chr6_2:66247418-66247437 | Msa0924360:intron | 10.0% |
| !! | AATAAATAATGATATGATAT+TGG | - | chr6_2:66247513-66247532 | Msa0924360:intron | 10.0% |
| !! | AAAGTATAAATATTAAGAAT+CGG | + | chr6_2:66247893-66247912 | None:intergenic | 10.0% |
| !! | ATATTCAAACAACAAAAAAA+GGG | + | chr6_2:66246353-66246372 | None:intergenic | 15.0% |
| !! | AATATTCAAACAACAAAAAA+AGG | + | chr6_2:66246354-66246373 | None:intergenic | 15.0% |
| !!! | CTTTTTAAATTGTTGTATTA+AGG | + | chr6_2:66246434-66246453 | None:intergenic | 15.0% |
| !!! | TCTTTTTTCTTTCTTTTTAT+TGG | - | chr6_2:66246860-66246879 | Msa0924360:intron | 15.0% |
| !! | ATTTCATTTACTTAAGAAAA+TGG | - | chr6_2:66247207-66247226 | Msa0924360:intron | 15.0% |
| !! | TTAAAAAAATGTCACTATTT+CGG | + | chr6_2:66247797-66247816 | None:intergenic | 15.0% |
| !! | TTAATAAGCTATATGTGAAA+TGG | - | chr6_2:66246219-66246238 | Msa0924360:CDS | 20.0% |
| !!! | GAAAAATTCCTCTAAAAAAA+GGG | + | chr6_2:66246409-66246428 | None:intergenic | 20.0% |
| !!! | TGAAAAATTCCTCTAAAAAA+AGG | + | chr6_2:66246410-66246429 | None:intergenic | 20.0% |
| !!! | ATATAAGTTAGCATTTTACA+AGG | + | chr6_2:66247009-66247028 | None:intergenic | 20.0% |
| !!! | GTTTATTAACTTGTTTTACA+AGG | + | chr6_2:66247032-66247051 | None:intergenic | 20.0% |
| !!! | TTTTTACTTATAATTGTGAC+CGG | + | chr6_2:66247272-66247291 | None:intergenic | 20.0% |
| !!! | ACAACTAATAAAGATGTTTT+TGG | + | chr6_2:66247462-66247481 | None:intergenic | 20.0% |
| !!! | AACCAAGATTTTTTTTCATT+AGG | - | chr6_2:66247755-66247774 | Msa0924360:intron | 20.0% |
| !!! | ACCAAGATTTTTTTTCATTA+GGG | - | chr6_2:66247756-66247775 | Msa0924360:intron | 20.0% |
| !!! | TCTTTACCTTTTTTTTACTT+TGG | - | chr6_2:66247821-66247840 | Msa0924360:intron | 20.0% |
| !!! | TACTTTAGAGATCATTATTT+CGG | - | chr6_2:66247907-66247926 | Msa0924360:intron | 20.0% |
| !!! | ATTTATTGACCCATTTTTAT+AGG | - | chr6_2:66247935-66247954 | Msa0924360:intron | 20.0% |
| !!! | ATTTTAGACTTTCACATTTT+GGG | + | chr6_2:66248246-66248265 | None:intergenic | 20.0% |
| !!! | AATTTTGAAACAAAGAGAAG+TGG | + | chr6_2:66246126-66246145 | None:intergenic | 25.0% |
| ! | ATGGTAAATACAGCAAAAAA+TGG | - | chr6_2:66246238-66246257 | Msa0924360:CDS | 25.0% |
| ! | AATGGTTATAAAGATGCAAA+TGG | - | chr6_2:66246256-66246275 | Msa0924360:CDS | 25.0% |
| ! | TGGTATGATTATTATTACCT+TGG | + | chr6_2:66246328-66246347 | None:intergenic | 25.0% |
| !!! | TATTTTTTTTTAAGCATGCC+AGG | - | chr6_2:66246697-66246716 | Msa0924360:CDS | 25.0% |
| !!! | ATTTTTTTTTAAGCATGCCA+GGG | - | chr6_2:66246698-66246717 | Msa0924360:CDS | 25.0% |
| ! | CCTCATATACATGATATATT+AGG | + | chr6_2:66246724-66246743 | None:intergenic | 25.0% |
| ! | CCTAATATATCATGTATATG+AGG | - | chr6_2:66246721-66246740 | Msa0924360:CDS | 25.0% |
| ! | AAAAACATAATGTGAGTATG+AGG | - | chr6_2:66246955-66246974 | Msa0924360:intron | 25.0% |
| ! | AAAACATAATGTGAGTATGA+GGG | - | chr6_2:66246956-66246975 | Msa0924360:intron | 25.0% |
| ! | TAATTCTTGTACGGAATTAA+AGG | + | chr6_2:66247121-66247140 | None:intergenic | 25.0% |
| ! | TATTGAATAACTGACGTATT+TGG | + | chr6_2:66247344-66247363 | None:intergenic | 25.0% |
| ! | CATCTTTATTAGTTGTAGTT+AGG | - | chr6_2:66247466-66247485 | Msa0924360:intron | 25.0% |
| ! | ACTGTTAAGACAAAGAAAAA+TGG | - | chr6_2:66247571-66247590 | Msa0924360:intron | 25.0% |
| ! | AGAAATAGTGATCAAAATAG+AGG | + | chr6_2:66247850-66247869 | None:intergenic | 25.0% |
| ! | GAAGTTACACCTATAAAAAT+GGG | + | chr6_2:66247947-66247966 | None:intergenic | 25.0% |
| ! | TGAAGTTACACCTATAAAAA+TGG | + | chr6_2:66247948-66247967 | None:intergenic | 25.0% |
| !! | CATTTTAGACTTTCACATTT+TGG | + | chr6_2:66248247-66248266 | None:intergenic | 25.0% |
| ! | TCATAAACAACCTTACAATA+AGG | + | chr6_2:66248544-66248563 | None:intergenic | 25.0% |
| TCAAAATTAAGCAAGCATGA+AGG | - | chr6_2:66246138-66246157 | Msa0924360:CDS | 30.0% | |
| CAAACAACAAAAAAAGGGTT+TGG | + | chr6_2:66246348-66246367 | None:intergenic | 30.0% | |
| CTAAAAAAAGGGTGAACATT+TGG | + | chr6_2:66246398-66246417 | None:intergenic | 30.0% | |
| !!! | AATGTTCACCCTTTTTTTAG+AGG | - | chr6_2:66246398-66246417 | Msa0924360:CDS | 30.0% |
| ! | TTTGAGCCTCAAAATTTTGT+AGG | + | chr6_2:66246536-66246555 | None:intergenic | 30.0% |
| CGCAATATATACTAATAACG+TGG | - | chr6_2:66246579-66246598 | Msa0924360:CDS | 30.0% | |
| ! | AATTTGTTTATATGGCTGAG+AGG | - | chr6_2:66246613-66246632 | Msa0924360:CDS | 30.0% |
| CGGAAAATCTAATTCTTGTA+CGG | + | chr6_2:66247130-66247149 | None:intergenic | 30.0% | |
| CATTGAATAACTGATGTATC+TGG | - | chr6_2:66247306-66247325 | Msa0924360:intron | 30.0% | |
| GCCCTAATGAAAAAAAATCT+TGG | + | chr6_2:66247760-66247779 | None:intergenic | 30.0% | |
| AAGGATAGTATATGTGTGAT+CGG | - | chr6_2:66247989-66248008 | Msa0924360:intron | 30.0% | |
| TATTGAACTTCTTCTTTAGC+TGG | + | chr6_2:66248045-66248064 | None:intergenic | 30.0% | |
| GGAAGAAGAAAAGAAAAAAG+AGG | - | chr6_2:66248123-66248142 | Msa0924360:intron | 30.0% | |
| ! | TGTGAAAGTCTAAAATGTGA+TGG | - | chr6_2:66248250-66248269 | Msa0924360:intron | 30.0% |
| TAAACAACCTTACAATAAGG+TGG | + | chr6_2:66248541-66248560 | None:intergenic | 30.0% | |
| !!! | AAACCAGAGCCGTTTTTTAA+GGG | - | chr6_2:66246486-66246505 | Msa0924360:CDS | 35.0% |
| CTGTTTGCACCCTTAAAAAA+CGG | + | chr6_2:66246498-66246517 | None:intergenic | 35.0% | |
| ATCTCACGTGTTAATACCAT+GGG | + | chr6_2:66246653-66246672 | None:intergenic | 35.0% | |
| AATCTCACGTGTTAATACCA+TGG | + | chr6_2:66246654-66246673 | None:intergenic | 35.0% | |
| ATACATGATATATTAGGCCC+TGG | + | chr6_2:66246718-66246737 | None:intergenic | 35.0% | |
| TATACAGTCCAACATGTTGA+TGG | + | chr6_2:66246798-66246817 | None:intergenic | 35.0% | |
| ! | CTATCTTAAAGTACCCTATC+CGG | - | chr6_2:66247250-66247269 | Msa0924360:intron | 35.0% |
| CTTATAATTGTGACCGGATA+GGG | + | chr6_2:66247266-66247285 | None:intergenic | 35.0% | |
| ACTTATAATTGTGACCGGAT+AGG | + | chr6_2:66247267-66247286 | None:intergenic | 35.0% | |
| TTTCTTATAATAGCGACGAG+AGG | - | chr6_2:66247383-66247402 | Msa0924360:intron | 35.0% | |
| TTCTTATAATAGCGACGAGA+GGG | - | chr6_2:66247384-66247403 | Msa0924360:intron | 35.0% | |
| TTACGCACTCGTATATTAGT+AGG | - | chr6_2:66247640-66247659 | Msa0924360:intron | 35.0% | |
| GTGTACATGATTCATTGTGA+TGG | - | chr6_2:66247715-66247734 | Msa0924360:intron | 35.0% | |
| AGGTCGCCAAAGTAAAAAAA+AGG | + | chr6_2:66247830-66247849 | None:intergenic | 35.0% | |
| AGGTGTAACTTCAGTATCAT+TGG | - | chr6_2:66247955-66247974 | Msa0924360:intron | 35.0% | |
| GTAACTTCAGTATCATTGGA+AGG | - | chr6_2:66247959-66247978 | Msa0924360:intron | 35.0% | |
| ATCATTGGAAGGAAATGACA+AGG | - | chr6_2:66247970-66247989 | Msa0924360:intron | 35.0% | |
| ACCAGATGCAGAAAAGAAAA+AGG | - | chr6_2:66248102-66248121 | Msa0924360:intron | 35.0% | |
| ! | TCCTTTTTCTTTTCTGCATC+TGG | + | chr6_2:66248106-66248125 | None:intergenic | 35.0% |
| TGTGAAGATTCAAAGTGTGA+TGG | - | chr6_2:66248301-66248320 | Msa0924360:intron | 35.0% | |
| AAAGTGTGATGGTAAGTGTA+AGG | - | chr6_2:66248312-66248331 | Msa0924360:intron | 35.0% | |
| AAGTGTGATGGTAAGTGTAA+GGG | - | chr6_2:66248313-66248332 | Msa0924360:intron | 35.0% | |
| CCTTACAATAAGGTGGATAA+GGG | + | chr6_2:66248534-66248553 | None:intergenic | 35.0% | |
| ACCTTACAATAAGGTGGATA+AGG | + | chr6_2:66248535-66248554 | None:intergenic | 35.0% | |
| !!! | GAAACCAGAGCCGTTTTTTA+AGG | - | chr6_2:66246485-66246504 | Msa0924360:CDS | 40.0% |
| TGCAAACAGTTCTACAGAGT+TGG | - | chr6_2:66246509-66246528 | Msa0924360:CDS | 40.0% | |
| GCAAACAGTTCTACAGAGTT+GGG | - | chr6_2:66246510-66246529 | Msa0924360:CDS | 40.0% | |
| ! | GTTGGGCCTACAAAATTTTG+AGG | - | chr6_2:66246527-66246546 | Msa0924360:CDS | 40.0% |
| TCTAACTGCCATCAACATGT+TGG | - | chr6_2:66246787-66246806 | Msa0924360:intron | 40.0% | |
| TCTTATAATAGCGACGAGAG+GGG | - | chr6_2:66247385-66247404 | Msa0924360:intron | 40.0% | |
| GCTCAAATCAGTTGTCTTAG+TGG | - | chr6_2:66247665-66247684 | Msa0924360:intron | 40.0% | |
| CACAAGTGTAGATCTCTTGT+GGG | - | chr6_2:66247688-66247707 | Msa0924360:intron | 40.0% | |
| ATTGTGATGGTACACAGTCT+GGG | - | chr6_2:66247728-66247747 | Msa0924360:intron | 40.0% | |
| TAGTGTCACCATACTTAGTG+TGG | - | chr6_2:66248063-66248082 | Msa0924360:intron | 40.0% | |
| ! | TGTCACGACTTGAGTTGTAA+TGG | - | chr6_2:66248205-66248224 | Msa0924360:intron | 40.0% |
| ! | TGTGACAACAAGAAGTGTGA+TGG | - | chr6_2:66248349-66248368 | Msa0924360:intron | 40.0% |
| CATTGAGGACATTGTTGGAT+GGG | + | chr6_2:66248457-66248476 | None:intergenic | 40.0% | |
| GATATGGAGCGTAGCATTTA+GGG | + | chr6_2:66248489-66248508 | None:intergenic | 40.0% | |
| CCCTTATCCACCTTATTGTA+AGG | - | chr6_2:66248531-66248550 | Msa0924360:intron | 40.0% | |
| GCACAAGTGTAGATCTCTTG+TGG | - | chr6_2:66247687-66247706 | Msa0924360:intron | 45.0% | |
| CATTGTGATGGTACACAGTC+TGG | - | chr6_2:66247727-66247746 | Msa0924360:intron | 45.0% | |
| ! | ATGTGTGATCGGTGATGATG+TGG | - | chr6_2:66248000-66248019 | Msa0924360:intron | 45.0% |
| CACCATACTTAGTGTGGAAG+AGG | - | chr6_2:66248069-66248088 | Msa0924360:intron | 45.0% | |
| CACCTCTTCCACACTAAGTA+TGG | + | chr6_2:66248074-66248093 | None:intergenic | 45.0% | |
| ! | AGCATGTCGTAGTGTTTTGC+AGG | - | chr6_2:66248168-66248187 | Msa0924360:intron | 45.0% |
| ! | GCATGTCGTAGTGTTTTGCA+GGG | - | chr6_2:66248169-66248188 | Msa0924360:intron | 45.0% |
| CCATTGAGGACATTGTTGGA+TGG | + | chr6_2:66248458-66248477 | None:intergenic | 45.0% | |
| CCATCCAACAATGTCCTCAA+TGG | - | chr6_2:66248455-66248474 | Msa0924360:intron | 45.0% | |
| TGCACCATTGAGGACATTGT+TGG | + | chr6_2:66248462-66248481 | None:intergenic | 45.0% | |
| CGATATGGAGCGTAGCATTT+AGG | + | chr6_2:66248490-66248509 | None:intergenic | 45.0% | |
| CAAGGTGGATAAGGTCGATA+TGG | + | chr6_2:66248505-66248524 | None:intergenic | 45.0% | |
| GGGTTAGAACAAGGTGGATA+AGG | + | chr6_2:66248514-66248533 | None:intergenic | 45.0% | |
| GGATAAGGGTTAGAACAAGG+TGG | + | chr6_2:66248520-66248539 | None:intergenic | 45.0% | |
| GGTGGATAAGGGTTAGAACA+AGG | + | chr6_2:66248523-66248542 | None:intergenic | 45.0% | |
| ! | TCACATGATGGAGCAAGTCT+CGG | + | chr6_2:66248575-66248594 | None:intergenic | 45.0% |
| !! | GACCTCAGCAGCAGTTTTGA+GGG | + | chr6_2:66246306-66246325 | None:intergenic | 50.0% |
| AAAACTGCTGCTGAGGTCCA+AGG | - | chr6_2:66246308-66246327 | Msa0924360:CDS | 50.0% | |
| GCACCCTTAAAAAACGGCTC+TGG | + | chr6_2:66246492-66246511 | None:intergenic | 50.0% | |
| GGTAGAAATCAGCGTTCCCA+TGG | - | chr6_2:66246634-66246653 | Msa0924360:CDS | 50.0% | |
| GTAGGTGTAGGAGGCTTCTT+AGG | + | chr6_2:66248394-66248413 | None:intergenic | 50.0% | |
| ! | TTCTTCTGAGGAGGTGTAGG+AGG | + | chr6_2:66248424-66248443 | None:intergenic | 50.0% |
| ! | GGATTCTTCTGAGGAGGTGT+AGG | + | chr6_2:66248427-66248446 | None:intergenic | 50.0% |
| ! | GGTGAAGGATTCTTCTGAGG+AGG | + | chr6_2:66248433-66248452 | None:intergenic | 50.0% |
| GGTGGTGAAGGATTCTTCTG+AGG | + | chr6_2:66248436-66248455 | None:intergenic | 50.0% | |
| CATTGTTGGATGGGTGGTGA+AGG | + | chr6_2:66248448-66248467 | None:intergenic | 50.0% | |
| TGAGGACATTGTTGGATGGG+TGG | + | chr6_2:66248454-66248473 | None:intergenic | 50.0% | |
| TTAGGGCATGTGCACCATTG+AGG | + | chr6_2:66248472-66248491 | None:intergenic | 50.0% | |
| ! | ACATGATGGAGCAAGTCTCG+GGG | + | chr6_2:66248573-66248592 | None:intergenic | 50.0% |
| ! | CACATGATGGAGCAAGTCTC+GGG | + | chr6_2:66248574-66248593 | None:intergenic | 50.0% |
| AGCCCTCAAAACTGCTGCTG+AGG | - | chr6_2:66246301-66246320 | Msa0924360:CDS | 55.0% | |
| ! | GGACCTCAGCAGCAGTTTTG+AGG | + | chr6_2:66246307-66246326 | None:intergenic | 55.0% |
| GGTGTAGGAGGCTTCTTAGG+AGG | + | chr6_2:66248391-66248410 | None:intergenic | 55.0% | |
| GGCTTCTCAGTAGGTGTAGG+AGG | + | chr6_2:66248403-66248422 | None:intergenic | 55.0% | |
| GGAGGCTTCTCAGTAGGTGT+AGG | + | chr6_2:66248406-66248425 | None:intergenic | 55.0% | |
| GGTGTAGGAGGCTTCTCAGT+AGG | + | chr6_2:66248412-66248431 | None:intergenic | 55.0% | |
| ! | GGAGGCTTCTTAGGAGGTGC+AGG | + | chr6_2:66248385-66248404 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 66246122 | 66248594 | 66246122 | ID=Msa0924360;Name=Msa0924360 |
| chr6_2 | mRNA | 66246122 | 66248594 | 66246122 | ID=Msa0924360-mRNA-1;Parent=Msa0924360;Name=Msa0924360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=32|1|0.66|1|0.5|0.33|3|0|240 |
| chr6_2 | exon | 66246122 | 66246759 | 66246122 | ID=Msa0924360-mRNA-1:exon:10483;Parent=Msa0924360-mRNA-1 |
| chr6_2 | exon | 66248387 | 66248465 | 66248387 | ID=Msa0924360-mRNA-1:exon:10482;Parent=Msa0924360-mRNA-1 |
| chr6_2 | exon | 66248557 | 66248594 | 66248557 | ID=Msa0924360-mRNA-1:exon:10481;Parent=Msa0924360-mRNA-1 |
| chr6_2 | five_prime_UTR | 66248563 | 66248594 | 66248563 | ID=Msa0924360-mRNA-1:five_prime_utr;Parent=Msa0924360-mRNA-1 |
| chr6_2 | CDS | 66248557 | 66248562 | 66248557 | ID=Msa0924360-mRNA-1:cds;Parent=Msa0924360-mRNA-1 |
| chr6_2 | CDS | 66248387 | 66248465 | 66248387 | ID=Msa0924360-mRNA-1:cds;Parent=Msa0924360-mRNA-1 |
| chr6_2 | CDS | 66246122 | 66246759 | 66246122 | ID=Msa0924360-mRNA-1:cds;Parent=Msa0924360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
