AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0031650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031650 MtrunA17_Chr1g0189841 98.649 222 3 0 1 222 1 222 2.30e-160 442
Msa0031650 MtrunA17_Chr4g0007051 79.730 222 44 1 1 222 1 221 2.64e-129 363
Msa0031650 MtrunA17_Chr4g0007031 79.730 222 44 1 1 222 1 221 4.04e-129 363
Msa0031650 MtrunA17_Chr5g0419971 79.730 222 44 1 1 222 1 221 4.04e-129 363
Msa0031650 MtrunA17_Chr5g0419981 79.730 222 44 1 1 222 1 221 4.04e-129 363
Msa0031650 MtrunA17_Chr4g0007041 79.279 222 45 1 1 222 1 221 2.88e-128 360
Msa0031650 MtrunA17_Chr2g0285871 78.378 222 47 1 1 222 1 221 4.92e-128 360
Msa0031650 MtrunA17_Chr6g0449751 80.455 220 40 3 3 222 4 220 1.89e-124 351
Msa0031650 MtrunA17_Chr6g0449731 81.944 216 36 3 6 221 7 219 3.68e-124 350
Msa0031650 MtrunA17_Chr6g0449771 81.106 217 38 3 6 222 7 220 3.37e-123 348
Msa0031650 MtrunA17_Chr6g0449761 81.395 215 37 3 4 218 5 216 9.65e-123 348
Msa0031650 MtrunA17_Chr6g0449781 64.253 221 75 4 2 222 3 219 5.64e-92 269
Msa0031650 MtrunA17_Chr6g0449791 63.942 208 73 2 2 209 3 208 1.13e-89 263
Msa0031650 MtrunA17_Chr1g0156131 59.174 218 79 3 1 217 1 209 1.12e-83 247
Msa0031650 MtrunA17_Chr2g0292831 64.500 200 64 4 19 217 19 212 1.36e-83 247
Msa0031650 MtrunA17_Chr2g0292901 63.184 201 66 5 19 217 19 213 1.41e-80 239
Msa0031650 MtrunA17_Chr2g0292861 65.896 173 56 3 47 217 7 178 1.29e-76 228
Msa0031650 MtrunA17_Chr2g0292841 65.896 173 56 3 47 217 7 178 3.21e-75 225
Msa0031650 MtrunA17_Chr1g0193671 46.948 213 107 3 5 216 6 213 9.97e-62 192
Msa0031650 MtrunA17_Chr1g0193421 47.500 200 99 3 19 217 21 215 1.26e-54 174
Msa0031650 MtrunA17_Chr7g0271211 48.731 197 95 3 22 217 20 211 1.53e-53 171
Msa0031650 MtrunA17_Chr5g0414971 47.980 198 96 4 22 217 27 219 2.92e-53 171
Msa0031650 MtrunA17_Chr2g0292911 68.067 119 36 2 47 164 7 124 8.78e-52 164
Msa0031650 MtrunA17_Chr1g0210761 44.279 201 97 6 19 217 20 207 4.89e-47 154
Msa0031650 MtrunA17_Chr1g0178711 36.486 222 125 4 1 217 11 221 1.84e-41 140
Msa0031650 MtrunA17_Chr2g0300561 44.149 188 97 4 28 214 23 203 1.90e-40 137
Msa0031650 MtrunA17_Chr8g0344021 43.229 192 101 4 27 217 24 208 1.28e-39 135
Msa0031650 MtrunA17_Chr3g0084531 37.915 211 123 3 7 217 3 205 1.73e-37 130
Msa0031650 MtrunA17_Chr8g0343911 40.314 191 106 4 26 215 19 202 6.90e-37 128
Msa0031650 MtrunA17_Chr2g0300581 38.679 212 114 5 5 215 8 204 1.07e-36 127
Msa0031650 MtrunA17_Chr2g0300591 38.863 211 113 5 5 214 8 203 1.39e-36 127
Msa0031650 MtrunA17_Chr2g0297231 37.441 211 124 3 7 217 3 205 9.10e-36 125
Msa0031650 MtrunA17_Chr8g0335851 41.111 180 102 2 22 201 26 201 1.78e-35 125
Msa0031650 MtrunA17_Chr8g0343934 37.629 194 115 2 7 200 3 190 2.57e-35 124
Msa0031650 MtrunA17_Chr2g0286171 38.140 215 121 6 3 217 6 208 6.70e-35 123
Msa0031650 MtrunA17_Chr2g0313961 38.191 199 115 3 19 217 15 205 1.05e-34 122
Msa0031650 MtrunA17_Chr8g0343954 37.629 194 113 3 24 217 20 205 2.20e-34 122
Msa0031650 MtrunA17_Chr3g0084521 38.660 194 111 3 24 217 19 204 3.11e-34 121
Msa0031650 MtrunA17_Chr2g0297241 38.235 204 117 3 7 207 3 200 3.71e-34 121
Msa0031650 MtrunA17_Chr3g0084511 38.144 194 112 3 24 217 19 204 3.90e-34 121
Msa0031650 MtrunA17_Chr2g0302171 39.062 192 109 3 26 217 22 205 5.02e-33 118
Msa0031650 MtrunA17_Chr2g0301611 35.545 211 128 3 7 217 3 205 2.20e-32 116
Msa0031650 MtrunA17_Chr4g0003361 37.696 191 110 4 27 217 20 201 2.71e-32 116
Msa0031650 MtrunA17_Chr8g0343961 34.434 212 125 4 6 217 8 205 9.04e-32 115
Msa0031650 MtrunA17_Chr5g0411961 35.122 205 119 3 3 207 7 197 1.51e-31 114
Msa0031650 MtrunA17_Chr8g0344041 36.923 195 114 4 24 217 23 209 3.68e-31 113
Msa0031650 MtrunA17_Chr2g0302541 37.824 193 110 4 26 217 22 205 5.22e-31 113
Msa0031650 MtrunA17_Chr3g0115141 39.062 192 103 5 28 217 27 206 5.46e-31 113
Msa0031650 MtrunA17_Chr3g0130241 35.859 198 119 2 4 201 71 260 6.97e-31 114
Msa0031650 MtrunA17_Chr4g0012651 38.021 192 111 3 26 217 22 205 3.17e-30 111
Msa0031650 MtrunA17_Chr7g0217811 37.500 192 112 3 26 217 22 205 3.20e-30 111
Msa0031650 MtrunA17_Chr8g0344051 41.899 179 93 5 1 177 1 170 7.93e-30 110
Msa0031650 MtrunA17_Chr8g0344031 34.884 215 125 4 3 217 8 207 9.17e-29 107
Msa0031650 MtrunA17_Chr2g0321601 35.377 212 116 7 7 217 12 203 5.27e-28 105
Msa0031650 MtrunA17_Chr8g0343921 34.272 213 127 6 6 217 3 203 7.21e-28 105
Msa0031650 MtrunA17_Chr2g0321581 41.912 136 73 3 83 217 74 204 7.95e-27 102
Msa0031650 MtrunA17_Chr4g0026201 40.278 144 80 3 75 217 67 205 8.86e-27 102
Msa0031650 MtrunA17_Chr4g0026191 40.278 144 80 3 75 217 67 205 1.52e-26 101
Msa0031650 MtrunA17_Chr2g0321591 41.176 136 74 3 83 217 74 204 2.35e-26 100
Msa0031650 MtrunA17_Chr3g0084551 31.683 202 124 5 7 207 3 191 2.64e-21 88.2
Msa0031650 MtrunA17_Chr2g0292881 67.241 58 18 1 94 151 1 57 7.01e-21 82.4
Msa0031650 MtrunA17_Chr3g0084501 42.453 106 57 2 6 111 4 105 1.59e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031650 AT3G05950.1 68.610 223 65 3 2 220 3 224 5.44e-101 292
Msa0031650 AT5G39130.1 70.000 210 61 2 9 217 11 219 6.42e-101 292
Msa0031650 AT5G39160.1 69.524 210 62 2 9 217 11 219 2.91e-100 290
Msa0031650 AT5G39190.1 69.524 210 62 2 9 217 11 219 3.46e-100 290
Msa0031650 AT5G39150.1 66.667 213 70 1 6 217 7 219 2.52e-98 285
Msa0031650 AT5G39180.1 66.667 213 70 1 6 217 7 219 4.13e-98 285
Msa0031650 AT5G39110.1 66.981 212 69 1 7 217 9 220 5.20e-98 285
Msa0031650 AT5G39120.1 68.966 203 62 1 16 217 17 219 2.48e-97 283
Msa0031650 AT5G39160.3 67.143 210 63 2 9 217 11 215 2.62e-95 278
Msa0031650 AT4G14630.1 63.721 215 77 1 4 217 8 222 1.14e-92 271
Msa0031650 AT3G04200.1 64.929 211 72 2 8 217 13 222 1.51e-88 261
Msa0031650 AT5G38940.1 67.005 197 63 2 22 217 26 221 9.58e-88 258
Msa0031650 AT5G38940.2 67.005 197 63 2 22 217 50 245 1.07e-87 259
Msa0031650 AT5G38930.1 67.839 199 62 2 20 217 24 221 1.73e-87 258
Msa0031650 AT5G38960.1 65.500 200 66 2 20 217 24 222 1.87e-86 255
Msa0031650 AT5G39190.2 61.722 209 58 1 9 217 11 197 1.50e-83 247
Msa0031650 AT5G39160.2 61.244 209 59 1 9 217 11 197 3.49e-83 246
Msa0031650 AT5G38910.1 60.465 215 83 2 4 217 6 219 5.45e-83 246
Msa0031650 AT3G04170.1 58.294 211 83 3 8 217 12 218 2.08e-80 240
Msa0031650 AT3G04190.1 60.294 204 79 2 15 217 19 221 7.30e-80 238
Msa0031650 AT3G04150.1 56.818 220 90 3 2 217 3 221 3.55e-79 237
Msa0031650 AT3G04150.2 54.310 232 90 3 2 217 3 234 1.88e-78 236
Msa0031650 AT3G04180.1 57.843 204 84 2 15 217 19 221 4.34e-76 229
Msa0031650 AT1G02335.1 46.009 213 109 3 6 217 8 215 2.39e-59 186
Msa0031650 AT5G38910.2 48.837 215 71 2 4 217 6 182 2.80e-59 185
Msa0031650 AT3G62020.1 48.387 217 104 5 3 217 5 215 6.28e-59 185
Msa0031650 AT1G09560.1 48.276 203 99 3 17 218 19 216 2.20e-58 184
Msa0031650 AT1G18970.1 46.512 215 104 5 4 217 14 218 8.46e-57 180
Msa0031650 AT1G18980.1 46.977 215 103 5 4 217 14 218 4.04e-56 178
Msa0031650 AT3G05930.1 44.811 212 109 4 8 217 10 215 1.18e-52 169
Msa0031650 AT5G26700.1 46.114 193 95 4 26 217 25 209 2.28e-51 166
Msa0031650 AT3G62020.2 49.724 181 86 3 39 217 9 186 2.80e-51 165
Msa0031650 AT1G10460.1 43.500 200 106 5 22 217 19 215 1.07e-49 161
Msa0031650 AT3G10080.1 41.176 204 108 4 19 217 23 219 1.72e-45 151
Msa0031650 AT3G10080.2 41.176 204 108 4 19 217 94 290 9.92e-45 151
Msa0031650 AT5G20630.1 42.718 206 104 6 5 209 8 200 3.76e-42 142
Msa0031650 AT1G74820.1 41.237 194 106 4 25 217 39 225 2.47e-39 135
Msa0031650 AT1G72610.1 44.318 176 92 3 26 200 19 189 1.95e-38 132
Msa0031650 AT5G61750.1 42.246 187 101 4 4 189 3 183 1.30e-37 130
Msa0031650 AT5G38950.1 61.972 71 27 0 146 216 2 72 2.20e-22 88.2

Find 61 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTCATCGTTGCCTTAT+TGG 0.166945 1_1:+58429821 Msa0031650:CDS
GTGAGAACTTCCAAAGAAAT+TGG 0.253491 1_1:-58430649 None:intergenic
ATCTAAACCACCAATTTCTT+TGG 0.270284 1_1:+58430639 Msa0031650:CDS
TACTGAGATTCTTGTAGTTT+TGG 0.280584 1_1:+58430411 Msa0031650:CDS
CAAATATATACCACCAGTTT+TGG 0.298065 1_1:-58429916 None:intergenic
ACTATCTTCAAAAGCAATTC+TGG 0.307062 1_1:+58430704 Msa0031650:CDS
CAACACACTTGGTATATCTT+TGG 0.313811 1_1:+58430333 Msa0031650:CDS
TGAGGAGGATTTAGACCTTT+TGG 0.315163 1_1:-58430373 None:intergenic
GGGGAGGCTATTGCCATTGC+TGG 0.317939 1_1:+58430565 Msa0031650:CDS
TTCCAATTGAACGTTGGTTA+TGG 0.322079 1_1:+58430544 Msa0031650:CDS
TGGTAATCACTCCAGGGTTT+TGG 0.338241 1_1:-58430597 None:intergenic
GTGGCGGTTAATGAAATATT+AGG 0.343882 1_1:+58430307 Msa0031650:CDS
ACCATAGCAAATGCTGTGTT+TGG 0.345841 1_1:+58430616 Msa0031650:CDS
AGATGATGCTACAGCCAATA+AGG 0.358144 1_1:-58429835 None:intergenic
TCCAATTGAACGTTGGTTAT+GGG 0.359751 1_1:+58430545 Msa0031650:CDS
TTTATCCACTTGAAAAGCTT+TGG 0.360291 1_1:-58430671 None:intergenic
GCGGATGATTTCTTCTTTCA+AGG 0.361596 1_1:+58430235 Msa0031650:CDS
TTGCAATGGGCTGGGATCAT+AGG 0.370729 1_1:-58429868 None:intergenic
GATTTCTTCTTTCAAGGATT+GGG 0.380699 1_1:+58430241 Msa0031650:CDS
TGATTTCTTCTTTCAAGGAT+TGG 0.382095 1_1:+58430240 Msa0031650:CDS
CCCCATAACCAACGTTCAAT+TGG 0.396722 1_1:-58430546 None:intergenic
ATCGCCTTTGTTCAATACTT+TGG 0.409827 1_1:-58430491 None:intergenic
TGGAAGTGAATGAGACCAAT+TGG 0.411740 1_1:-58430526 None:intergenic
TTCTTTCAAGGATTGGGACC+TGG 0.419003 1_1:+58430247 Msa0031650:CDS
GATGTATTTGTGTTTCCAAT+TGG 0.426726 1_1:+58430511 Msa0031650:CDS
ACAAAAGTCTTGCAATGGGC+TGG 0.433311 1_1:-58429877 None:intergenic
TAATTTCCAGTGTTCGTGAA+TGG 0.434819 1_1:+58430181 Msa0031650:intron
TCTTTCAAGGATTGGGACCT+GGG 0.451301 1_1:+58430248 Msa0031650:CDS
AATATTTCATTAACCGCCAC+TGG 0.460762 1_1:-58430304 None:intergenic
GCAATCAATGATACCAAAAC+TGG 0.479248 1_1:+58429903 Msa0031650:CDS
TTGGCTGTAGCATCATCTGT+TGG 0.488379 1_1:+58429840 Msa0031650:CDS
CAAAAGTCTTGCAATGGGCT+GGG 0.501275 1_1:-58429876 None:intergenic
ACGGTTATTGTCTTGATTCG+AGG 0.502878 1_1:-58430461 None:intergenic
CCAATTGAACGTTGGTTATG+GGG 0.522282 1_1:+58430546 Msa0031650:CDS
TCATCCGCATTTGCAAGCTT+AGG 0.527443 1_1:-58430220 None:intergenic
AGTGGATTTGAAGTATTCCC+AGG 0.530147 1_1:-58430265 None:intergenic
TTGGAAGGTACGCTTTATGT+TGG 0.530368 1_1:+58430430 Msa0031650:CDS
CAACACAAAAGTCTTGCAAT+GGG 0.530539 1_1:-58429881 None:intergenic
TTTGCTATGGTAATCACTCC+AGG 0.534925 1_1:-58430604 None:intergenic
AGAACTTCCAAAGAAATTGG+TGG 0.547357 1_1:-58430646 None:intergenic
GCAACACAAAAGTCTTGCAA+TGG 0.550725 1_1:-58429882 None:intergenic
TTGGCTACTAAGACCAGCAA+TGG 0.575368 1_1:-58430578 None:intergenic
AGATCCTAAGCTTGCAAATG+CGG 0.587730 1_1:+58430216 Msa0031650:CDS
TCCAAACACAGCATTTGCTA+TGG 0.591300 1_1:-58430617 None:intergenic
TCAATACTTTGGTGAAGAGA+CGG 0.592996 1_1:-58430480 None:intergenic
ATTCACTTCCAATTGAACGT+TGG 0.603364 1_1:+58430538 Msa0031650:CDS
ATATTAGGACTCAACACACT+TGG 0.605651 1_1:+58430322 Msa0031650:CDS
TTGCTATGGTAATCACTCCA+GGG 0.606541 1_1:-58430603 None:intergenic
ATCAATGATACCAAAACTGG+TGG 0.616290 1_1:+58429906 Msa0031650:CDS
GTACCTCGAGGGTGAGTGTG+AGG 0.618466 1_1:-58430391 None:intergenic
ATCTAAAGTGACTCCAGTGG+CGG 0.629643 1_1:+58430291 Msa0031650:CDS
ATTGAACGTTGGTTATGGGG+AGG 0.631460 1_1:+58430549 Msa0031650:CDS
CCTCGAGGGTGAGTGTGAGG+AGG 0.646431 1_1:-58430388 None:intergenic
TTCACCAAAGTATTGAACAA+AGG 0.653228 1_1:+58430487 Msa0031650:CDS
CAAGAATCTCAGTACCTCGA+GGG 0.659275 1_1:-58430402 None:intergenic
GGGAATACTTCAAATCCACT+CGG 0.669068 1_1:+58430268 Msa0031650:CDS
GGTCTTAGTAGCCAAAACCC+TGG 0.671124 1_1:+58430586 Msa0031650:CDS
GGAGTCACTTTAGATCCGAG+TGG 0.676827 1_1:-58430283 None:intergenic
CGGATCTAAAGTGACTCCAG+TGG 0.687895 1_1:+58430288 Msa0031650:CDS
ACAAGAATCTCAGTACCTCG+AGG 0.695186 1_1:-58430403 None:intergenic
CCTCCTCACACTCACCCTCG+AGG 0.708362 1_1:+58430388 Msa0031650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTATTTATTTTT+TGG + chr1_1:58430064-58430083 Msa0031650:intron 0.0%
!!! TTTTTTTTTTATTTATTTTT+TGG + chr1_1:58430064-58430083 Msa0031650:intron 0.0%
!!! ATTTTATACACCTAAAATTA+TGG + chr1_1:58430034-58430053 Msa0031650:intron 15.0%
!!! AAATCAATTACCATAATTTT+AGG - chr1_1:58430047-58430066 None:intergenic 15.0%
!!! ATTTTATACACCTAAAATTA+TGG + chr1_1:58430034-58430053 Msa0031650:intron 15.0%
!!! AAATCAATTACCATAATTTT+AGG - chr1_1:58430047-58430066 None:intergenic 15.0%
!! AAAAAACTATAATAACATGG+AGG - chr1_1:58429970-58429989 None:intergenic 20.0%
!! CACAAAAAACTATAATAACA+TGG - chr1_1:58429973-58429992 None:intergenic 20.0%
!! AAAAAACTATAATAACATGG+AGG - chr1_1:58429970-58429989 None:intergenic 20.0%
!! CACAAAAAACTATAATAACA+TGG - chr1_1:58429973-58429992 None:intergenic 20.0%
!! AATCAAGTTTTCTTGTGATT+TGG + chr1_1:58430153-58430172 Msa0031650:intron 25.0%
!! AATCAAGTTTTCTTGTGATT+TGG + chr1_1:58430153-58430172 Msa0031650:intron 25.0%
! CAAATATATACCACCAGTTT+TGG - chr1_1:58429919-58429938 None:intergenic 30.0%
! GATTGCATATCTAAAACATG+TGG + chr1_1:58430000-58430019 Msa0031650:intron 30.0%
TGATTTCTTCTTTCAAGGAT+TGG + chr1_1:58430240-58430259 Msa0031650:CDS 30.0%
GATTTCTTCTTTCAAGGATT+GGG + chr1_1:58430241-58430260 Msa0031650:CDS 30.0%
! TACTGAGATTCTTGTAGTTT+TGG + chr1_1:58430411-58430430 Msa0031650:CDS 30.0%
!! TTCACCAAAGTATTGAACAA+AGG + chr1_1:58430487-58430506 Msa0031650:CDS 30.0%
GATGTATTTGTGTTTCCAAT+TGG + chr1_1:58430511-58430530 Msa0031650:CDS 30.0%
ATCTAAACCACCAATTTCTT+TGG + chr1_1:58430639-58430658 Msa0031650:CDS 30.0%
TTTATCCACTTGAAAAGCTT+TGG - chr1_1:58430674-58430693 None:intergenic 30.0%
ACTATCTTCAAAAGCAATTC+TGG + chr1_1:58430704-58430723 Msa0031650:CDS 30.0%
! CAAATATATACCACCAGTTT+TGG - chr1_1:58429919-58429938 None:intergenic 30.0%
! GATTGCATATCTAAAACATG+TGG + chr1_1:58430000-58430019 Msa0031650:intron 30.0%
TGATTTCTTCTTTCAAGGAT+TGG + chr1_1:58430240-58430259 Msa0031650:CDS 30.0%
GATTTCTTCTTTCAAGGATT+GGG + chr1_1:58430241-58430260 Msa0031650:CDS 30.0%
! TACTGAGATTCTTGTAGTTT+TGG + chr1_1:58430411-58430430 Msa0031650:CDS 30.0%
!! TTCACCAAAGTATTGAACAA+AGG + chr1_1:58430487-58430506 Msa0031650:CDS 30.0%
GATGTATTTGTGTTTCCAAT+TGG + chr1_1:58430511-58430530 Msa0031650:CDS 30.0%
ATCTAAACCACCAATTTCTT+TGG + chr1_1:58430639-58430658 Msa0031650:CDS 30.0%
TTTATCCACTTGAAAAGCTT+TGG - chr1_1:58430674-58430693 None:intergenic 30.0%
ACTATCTTCAAAAGCAATTC+TGG + chr1_1:58430704-58430723 Msa0031650:CDS 30.0%
TTACTTCATCGTTGCCTTAT+TGG + chr1_1:58429821-58429840 Msa0031650:CDS 35.0%
CAACACAAAAGTCTTGCAAT+GGG - chr1_1:58429884-58429903 None:intergenic 35.0%
GCAATCAATGATACCAAAAC+TGG + chr1_1:58429903-58429922 Msa0031650:CDS 35.0%
ATCAATGATACCAAAACTGG+TGG + chr1_1:58429906-58429925 Msa0031650:CDS 35.0%
TAATTTCCAGTGTTCGTGAA+TGG + chr1_1:58430181-58430200 Msa0031650:intron 35.0%
! AATTTTCCATTCACGAACAC+TGG - chr1_1:58430190-58430209 None:intergenic 35.0%
AATATTTCATTAACCGCCAC+TGG - chr1_1:58430307-58430326 None:intergenic 35.0%
GTGGCGGTTAATGAAATATT+AGG + chr1_1:58430307-58430326 Msa0031650:CDS 35.0%
ATATTAGGACTCAACACACT+TGG + chr1_1:58430322-58430341 Msa0031650:CDS 35.0%
CAACACACTTGGTATATCTT+TGG + chr1_1:58430333-58430352 Msa0031650:CDS 35.0%
!!! GAGATTCTTGTAGTTTTGGA+AGG + chr1_1:58430415-58430434 Msa0031650:CDS 35.0%
TCAATACTTTGGTGAAGAGA+CGG - chr1_1:58430483-58430502 None:intergenic 35.0%
ATCGCCTTTGTTCAATACTT+TGG - chr1_1:58430494-58430513 None:intergenic 35.0%
ATTCACTTCCAATTGAACGT+TGG + chr1_1:58430538-58430557 Msa0031650:CDS 35.0%
! TTCCAATTGAACGTTGGTTA+TGG + chr1_1:58430544-58430563 Msa0031650:CDS 35.0%
! TCCAATTGAACGTTGGTTAT+GGG + chr1_1:58430545-58430564 Msa0031650:CDS 35.0%
AGAACTTCCAAAGAAATTGG+TGG - chr1_1:58430649-58430668 None:intergenic 35.0%
GTGAGAACTTCCAAAGAAAT+TGG - chr1_1:58430652-58430671 None:intergenic 35.0%
TTACTTCATCGTTGCCTTAT+TGG + chr1_1:58429821-58429840 Msa0031650:CDS 35.0%
CAACACAAAAGTCTTGCAAT+GGG - chr1_1:58429884-58429903 None:intergenic 35.0%
GCAATCAATGATACCAAAAC+TGG + chr1_1:58429903-58429922 Msa0031650:CDS 35.0%
ATCAATGATACCAAAACTGG+TGG + chr1_1:58429906-58429925 Msa0031650:CDS 35.0%
TAATTTCCAGTGTTCGTGAA+TGG + chr1_1:58430181-58430200 Msa0031650:intron 35.0%
! AATTTTCCATTCACGAACAC+TGG - chr1_1:58430190-58430209 None:intergenic 35.0%
AATATTTCATTAACCGCCAC+TGG - chr1_1:58430307-58430326 None:intergenic 35.0%
GTGGCGGTTAATGAAATATT+AGG + chr1_1:58430307-58430326 Msa0031650:CDS 35.0%
ATATTAGGACTCAACACACT+TGG + chr1_1:58430322-58430341 Msa0031650:CDS 35.0%
CAACACACTTGGTATATCTT+TGG + chr1_1:58430333-58430352 Msa0031650:CDS 35.0%
!!! GAGATTCTTGTAGTTTTGGA+AGG + chr1_1:58430415-58430434 Msa0031650:CDS 35.0%
TCAATACTTTGGTGAAGAGA+CGG - chr1_1:58430483-58430502 None:intergenic 35.0%
ATCGCCTTTGTTCAATACTT+TGG - chr1_1:58430494-58430513 None:intergenic 35.0%
ATTCACTTCCAATTGAACGT+TGG + chr1_1:58430538-58430557 Msa0031650:CDS 35.0%
! TTCCAATTGAACGTTGGTTA+TGG + chr1_1:58430544-58430563 Msa0031650:CDS 35.0%
! TCCAATTGAACGTTGGTTAT+GGG + chr1_1:58430545-58430564 Msa0031650:CDS 35.0%
AGAACTTCCAAAGAAATTGG+TGG - chr1_1:58430649-58430668 None:intergenic 35.0%
GTGAGAACTTCCAAAGAAAT+TGG - chr1_1:58430652-58430671 None:intergenic 35.0%
AGATGATGCTACAGCCAATA+AGG - chr1_1:58429838-58429857 None:intergenic 40.0%
GCAACACAAAAGTCTTGCAA+TGG - chr1_1:58429885-58429904 None:intergenic 40.0%
AGATCCTAAGCTTGCAAATG+CGG + chr1_1:58430216-58430235 Msa0031650:CDS 40.0%
GCGGATGATTTCTTCTTTCA+AGG + chr1_1:58430235-58430254 Msa0031650:CDS 40.0%
! AGTGGATTTGAAGTATTCCC+AGG - chr1_1:58430268-58430287 None:intergenic 40.0%
GGGAATACTTCAAATCCACT+CGG + chr1_1:58430268-58430287 Msa0031650:CDS 40.0%
! TGAGGAGGATTTAGACCTTT+TGG - chr1_1:58430376-58430395 None:intergenic 40.0%
! TTGGAAGGTACGCTTTATGT+TGG + chr1_1:58430430-58430449 Msa0031650:CDS 40.0%
! ACGGTTATTGTCTTGATTCG+AGG - chr1_1:58430464-58430483 None:intergenic 40.0%
TGGAAGTGAATGAGACCAAT+TGG - chr1_1:58430529-58430548 None:intergenic 40.0%
! CCAATTGAACGTTGGTTATG+GGG + chr1_1:58430546-58430565 Msa0031650:CDS 40.0%
TTGCTATGGTAATCACTCCA+GGG - chr1_1:58430606-58430625 None:intergenic 40.0%
! TTTGCTATGGTAATCACTCC+AGG - chr1_1:58430607-58430626 None:intergenic 40.0%
ACCATAGCAAATGCTGTGTT+TGG + chr1_1:58430616-58430635 Msa0031650:CDS 40.0%
! TCCAAACACAGCATTTGCTA+TGG - chr1_1:58430620-58430639 None:intergenic 40.0%
!! TCTCACCAAAGCTTTTCAAG+TGG + chr1_1:58430666-58430685 Msa0031650:CDS 40.0%
AGATGATGCTACAGCCAATA+AGG - chr1_1:58429838-58429857 None:intergenic 40.0%
GCAACACAAAAGTCTTGCAA+TGG - chr1_1:58429885-58429904 None:intergenic 40.0%
AGATCCTAAGCTTGCAAATG+CGG + chr1_1:58430216-58430235 Msa0031650:CDS 40.0%
GCGGATGATTTCTTCTTTCA+AGG + chr1_1:58430235-58430254 Msa0031650:CDS 40.0%
! AGTGGATTTGAAGTATTCCC+AGG - chr1_1:58430268-58430287 None:intergenic 40.0%
GGGAATACTTCAAATCCACT+CGG + chr1_1:58430268-58430287 Msa0031650:CDS 40.0%
! TGAGGAGGATTTAGACCTTT+TGG - chr1_1:58430376-58430395 None:intergenic 40.0%
! TTGGAAGGTACGCTTTATGT+TGG + chr1_1:58430430-58430449 Msa0031650:CDS 40.0%
! ACGGTTATTGTCTTGATTCG+AGG - chr1_1:58430464-58430483 None:intergenic 40.0%
TGGAAGTGAATGAGACCAAT+TGG - chr1_1:58430529-58430548 None:intergenic 40.0%
! CCAATTGAACGTTGGTTATG+GGG + chr1_1:58430546-58430565 Msa0031650:CDS 40.0%
TTGCTATGGTAATCACTCCA+GGG - chr1_1:58430606-58430625 None:intergenic 40.0%
! TTTGCTATGGTAATCACTCC+AGG - chr1_1:58430607-58430626 None:intergenic 40.0%
ACCATAGCAAATGCTGTGTT+TGG + chr1_1:58430616-58430635 Msa0031650:CDS 40.0%
! TCCAAACACAGCATTTGCTA+TGG - chr1_1:58430620-58430639 None:intergenic 40.0%
!! TCTCACCAAAGCTTTTCAAG+TGG + chr1_1:58430666-58430685 Msa0031650:CDS 40.0%
TTGGCTGTAGCATCATCTGT+TGG + chr1_1:58429840-58429859 Msa0031650:CDS 45.0%
! CAAAAGTCTTGCAATGGGCT+GGG - chr1_1:58429879-58429898 None:intergenic 45.0%
ACAAAAGTCTTGCAATGGGC+TGG - chr1_1:58429880-58429899 None:intergenic 45.0%
TCATCCGCATTTGCAAGCTT+AGG - chr1_1:58430223-58430242 None:intergenic 45.0%
TTCTTTCAAGGATTGGGACC+TGG + chr1_1:58430247-58430266 Msa0031650:CDS 45.0%
TCTTTCAAGGATTGGGACCT+GGG + chr1_1:58430248-58430267 Msa0031650:CDS 45.0%
! ATCTAAAGTGACTCCAGTGG+CGG + chr1_1:58430291-58430310 Msa0031650:CDS 45.0%
!! TTTTGGTGCAAAATCGACGC+GGG - chr1_1:58430359-58430378 None:intergenic 45.0%
!! CTTTTGGTGCAAAATCGACG+CGG - chr1_1:58430360-58430379 None:intergenic 45.0%
CAAGAATCTCAGTACCTCGA+GGG - chr1_1:58430405-58430424 None:intergenic 45.0%
ACAAGAATCTCAGTACCTCG+AGG - chr1_1:58430406-58430425 None:intergenic 45.0%
CCCCATAACCAACGTTCAAT+TGG - chr1_1:58430549-58430568 None:intergenic 45.0%
! ATTGAACGTTGGTTATGGGG+AGG + chr1_1:58430549-58430568 Msa0031650:CDS 45.0%
TTGGCTACTAAGACCAGCAA+TGG - chr1_1:58430581-58430600 None:intergenic 45.0%
! TGGTAATCACTCCAGGGTTT+TGG - chr1_1:58430600-58430619 None:intergenic 45.0%
TTGGCTGTAGCATCATCTGT+TGG + chr1_1:58429840-58429859 Msa0031650:CDS 45.0%
! CAAAAGTCTTGCAATGGGCT+GGG - chr1_1:58429879-58429898 None:intergenic 45.0%
ACAAAAGTCTTGCAATGGGC+TGG - chr1_1:58429880-58429899 None:intergenic 45.0%
TCATCCGCATTTGCAAGCTT+AGG - chr1_1:58430223-58430242 None:intergenic 45.0%
TTCTTTCAAGGATTGGGACC+TGG + chr1_1:58430247-58430266 Msa0031650:CDS 45.0%
TCTTTCAAGGATTGGGACCT+GGG + chr1_1:58430248-58430267 Msa0031650:CDS 45.0%
! ATCTAAAGTGACTCCAGTGG+CGG + chr1_1:58430291-58430310 Msa0031650:CDS 45.0%
!! TTTTGGTGCAAAATCGACGC+GGG - chr1_1:58430359-58430378 None:intergenic 45.0%
!! CTTTTGGTGCAAAATCGACG+CGG - chr1_1:58430360-58430379 None:intergenic 45.0%
CAAGAATCTCAGTACCTCGA+GGG - chr1_1:58430405-58430424 None:intergenic 45.0%
ACAAGAATCTCAGTACCTCG+AGG - chr1_1:58430406-58430425 None:intergenic 45.0%
CCCCATAACCAACGTTCAAT+TGG - chr1_1:58430549-58430568 None:intergenic 45.0%
! ATTGAACGTTGGTTATGGGG+AGG + chr1_1:58430549-58430568 Msa0031650:CDS 45.0%
TTGGCTACTAAGACCAGCAA+TGG - chr1_1:58430581-58430600 None:intergenic 45.0%
! TGGTAATCACTCCAGGGTTT+TGG - chr1_1:58430600-58430619 None:intergenic 45.0%
!! TTGCAATGGGCTGGGATCAT+AGG - chr1_1:58429871-58429890 None:intergenic 50.0%
! GGAGTCACTTTAGATCCGAG+TGG - chr1_1:58430286-58430305 None:intergenic 50.0%
! CGGATCTAAAGTGACTCCAG+TGG + chr1_1:58430288-58430307 Msa0031650:CDS 50.0%
!!! CGCGTCGATTTTGCACCAAA+AGG + chr1_1:58430358-58430377 Msa0031650:CDS 50.0%
GGTCTTAGTAGCCAAAACCC+TGG + chr1_1:58430586-58430605 Msa0031650:CDS 50.0%
!! TTGCAATGGGCTGGGATCAT+AGG - chr1_1:58429871-58429890 None:intergenic 50.0%
! GGAGTCACTTTAGATCCGAG+TGG - chr1_1:58430286-58430305 None:intergenic 50.0%
! CGGATCTAAAGTGACTCCAG+TGG + chr1_1:58430288-58430307 Msa0031650:CDS 50.0%
!!! CGCGTCGATTTTGCACCAAA+AGG + chr1_1:58430358-58430377 Msa0031650:CDS 50.0%
GGTCTTAGTAGCCAAAACCC+TGG + chr1_1:58430586-58430605 Msa0031650:CDS 50.0%
GTACCTCGAGGGTGAGTGTG+AGG - chr1_1:58430394-58430413 None:intergenic 60.0%
GGGGAGGCTATTGCCATTGC+TGG + chr1_1:58430565-58430584 Msa0031650:CDS 60.0%
GTACCTCGAGGGTGAGTGTG+AGG - chr1_1:58430394-58430413 None:intergenic 60.0%
GGGGAGGCTATTGCCATTGC+TGG + chr1_1:58430565-58430584 Msa0031650:CDS 60.0%
CCTCGAGGGTGAGTGTGAGG+AGG - chr1_1:58430391-58430410 None:intergenic 65.0%
CCTCCTCACACTCACCCTCG+AGG + chr1_1:58430388-58430407 Msa0031650:CDS 65.0%
CCTCGAGGGTGAGTGTGAGG+AGG - chr1_1:58430391-58430410 None:intergenic 65.0%
CCTCCTCACACTCACCCTCG+AGG + chr1_1:58430388-58430407 Msa0031650:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 58429810 58430741 58429810 ID=Msa0031650;Name=Msa0031650
chr1_1 mRNA 58429810 58430741 58429810 ID=Msa0031650-mRNA-1;Parent=Msa0031650;Name=Msa0031650-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|222
chr1_1 exon 58429810 58429927 58429810 ID=Msa0031650-mRNA-1:exon:17836;Parent=Msa0031650-mRNA-1
chr1_1 exon 58430191 58430741 58430191 ID=Msa0031650-mRNA-1:exon:17837;Parent=Msa0031650-mRNA-1
chr1_1 CDS 58429810 58429927 58429810 ID=Msa0031650-mRNA-1:cds;Parent=Msa0031650-mRNA-1
chr1_1 CDS 58430191 58430741 58430191 ID=Msa0031650-mRNA-1:cds;Parent=Msa0031650-mRNA-1
Gene Sequence

>Msa0031650

ATGGGAGTTTTTTACTTCATCGTTGCCTTATTGGCTGTAGCATCATCTGTTGGTTTTGCCTATGATCCCAGCCCATTGCAAGACTTTTGTGTTGCAATCAATGATACCAAAACTGGTGTGTTCGTGAATGGAAAATTTTGCAAAGATCCTAAGCTTGCAAATGCGGATGATTTCTTCTTTCAAGGATTGGGACCTGGGAATACTTCAAATCCACTCGGATCTAAAGTGACTCCAGTGGCGGTTAATGAAATATTAGGACTCAACACACTTGGTATATCTTTGGCCCGCGTCGATTTTGCACCAAAAGGTCTAAATCCTCCTCACACTCACCCTCGAGGTACTGAGATTCTTGTAGTTTTGGAAGGTACGCTTTATGTTGGATTCGTTACCTCGAATCAAGACAATAACCGTCTCTTCACCAAAGTATTGAACAAAGGCGATGTATTTGTGTTTCCAATTGGTCTCATTCACTTCCAATTGAACGTTGGTTATGGGGAGGCTATTGCCATTGCTGGTCTTAGTAGCCAAAACCCTGGAGTGATTACCATAGCAAATGCTGTGTTTGGATCTAAACCACCAATTTCTTTGGAAGTTCTCACCAAAGCTTTTCAAGTGGATAAAAATGTAATCGACTATCTTCAAAAGCAATTCTGGTACAACAATAGTTAA

Protein sequence

>Msa0031650

MGVFYFIVALLAVASSVGFAYDPSPLQDFCVAINDTKTGVFVNGKFCKDPKLANADDFFFQGLGPGNTSNPLGSKVTPVAVNEILGLNTLGISLARVDFAPKGLNPPHTHPRGTEILVVLEGTLYVGFVTSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGEAIAIAGLSSQNPGVITIANAVFGSKPPISLEVLTKAFQVDKNVIDYLQKQFWYNNS*