AlfalfaGEDB | Msa0031650

M. sativa cultivar zhongmu-4 / Msa0031650

KEGG: -
GO: -
PFAM: PF00190.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0031650	sp\|Q9SFF9\|GL17_ARATH	68.610	223	65	3	2	220	3	224	5.35e-100	292

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0031650	-0.805866	1.085313e-49	-8.615850e-47
Msa0004940	Msa0031650	0.837300	5.639770e-57	-8.615850e-47
Msa0004990	Msa0031650	0.853172	2.848120e-61	-8.615850e-47
Msa0012800	Msa0031650	0.837543	4.886828e-57	-8.615850e-47
Msa0016830	Msa0031650	-0.816060	6.719536e-52	-8.615850e-47
Msa0021870	Msa0031650	0.824809	6.598912e-54	-8.615850e-47
Msa0024650	Msa0031650	0.825475	4.593987e-54	-8.615850e-47
Msa0031650	Msa0036580	0.812182	4.821812e-51	-8.615850e-47
Msa0031650	Msa0038010	0.820154	7.967664e-53	-8.615850e-47
Msa0031650	Msa0046700	-0.829901	3.970690e-55	-8.615850e-47

Showing 1 to 10 of 429 entries

Previous1 2 3 4 5…43Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0031650	MtrunA17_Chr1g0189841	98.649	222	3	0	1	222	1	222	2.30e-160	442
Msa0031650	MtrunA17_Chr4g0007051	79.730	222	44	1	1	222	1	221	2.64e-129	363
Msa0031650	MtrunA17_Chr4g0007031	79.730	222	44	1	1	222	1	221	4.04e-129	363
Msa0031650	MtrunA17_Chr5g0419971	79.730	222	44	1	1	222	1	221	4.04e-129	363
Msa0031650	MtrunA17_Chr5g0419981	79.730	222	44	1	1	222	1	221	4.04e-129	363
Msa0031650	MtrunA17_Chr4g0007041	79.279	222	45	1	1	222	1	221	2.88e-128	360
Msa0031650	MtrunA17_Chr2g0285871	78.378	222	47	1	1	222	1	221	4.92e-128	360
Msa0031650	MtrunA17_Chr6g0449751	80.455	220	40	3	3	222	4	220	1.89e-124	351
Msa0031650	MtrunA17_Chr6g0449731	81.944	216	36	3	6	221	7	219	3.68e-124	350
Msa0031650	MtrunA17_Chr6g0449771	81.106	217	38	3	6	222	7	220	3.37e-123	348

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0031650	AT3G05950.1	68.610	223	65	3	2	220	3	224	5.44e-101	292
Msa0031650	AT5G39130.1	70.000	210	61	2	9	217	11	219	6.42e-101	292
Msa0031650	AT5G39160.1	69.524	210	62	2	9	217	11	219	2.91e-100	290
Msa0031650	AT5G39190.1	69.524	210	62	2	9	217	11	219	3.46e-100	290
Msa0031650	AT5G39150.1	66.667	213	70	1	6	217	7	219	2.52e-98	285
Msa0031650	AT5G39180.1	66.667	213	70	1	6	217	7	219	4.13e-98	285
Msa0031650	AT5G39110.1	66.981	212	69	1	7	217	9	220	5.20e-98	285
Msa0031650	AT5G39120.1	68.966	203	62	1	16	217	17	219	2.48e-97	283
Msa0031650	AT5G39160.3	67.143	210	63	2	9	217	11	215	2.62e-95	278
Msa0031650	AT4G14630.1	63.721	215	77	1	4	217	8	222	1.14e-92	271

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

Find 61 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATATTTCATTAACCGCCAC+TGG	0.460762	1_1:-58430304	None:intergenic
ACAAAAGTCTTGCAATGGGC+TGG	0.433311	1_1:-58429877	None:intergenic
ACAAGAATCTCAGTACCTCG+AGG	0.695186	1_1:-58430403	None:intergenic
ACCATAGCAAATGCTGTGTT+TGG	0.345841	1_1:+58430616	Msa0031650:CDS
ACGGTTATTGTCTTGATTCG+AGG	0.502878	1_1:-58430461	None:intergenic
ACTATCTTCAAAAGCAATTC+TGG	0.307062	1_1:+58430704	Msa0031650:CDS
AGAACTTCCAAAGAAATTGG+TGG	0.547357	1_1:-58430646	None:intergenic
AGATCCTAAGCTTGCAAATG+CGG	0.587730	1_1:+58430216	Msa0031650:CDS
AGATGATGCTACAGCCAATA+AGG	0.358144	1_1:-58429835	None:intergenic
AGTGGATTTGAAGTATTCCC+AGG	0.530147	1_1:-58430265	None:intergenic

Showing 1 to 10 of 61 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGATTTCTTCTTTCAAGGAT+TGG	+	chr1_1:58430240-58430259	Msa0031650:CDS	30.0%
GATTTCTTCTTTCAAGGATT+GGG	+	chr1_1:58430241-58430260	Msa0031650:CDS	30.0%
GATGTATTTGTGTTTCCAAT+TGG	+	chr1_1:58430511-58430530	Msa0031650:CDS	30.0%
ATCTAAACCACCAATTTCTT+TGG	+	chr1_1:58430639-58430658	Msa0031650:CDS	30.0%
TTTATCCACTTGAAAAGCTT+TGG	-	chr1_1:58430674-58430693	None:intergenic	30.0%
ACTATCTTCAAAAGCAATTC+TGG	+	chr1_1:58430704-58430723	Msa0031650:CDS	30.0%
TGATTTCTTCTTTCAAGGAT+TGG	+	chr1_1:58430240-58430259	Msa0031650:CDS	30.0%
GATTTCTTCTTTCAAGGATT+GGG	+	chr1_1:58430241-58430260	Msa0031650:CDS	30.0%
GATGTATTTGTGTTTCCAAT+TGG	+	chr1_1:58430511-58430530	Msa0031650:CDS	30.0%
ATCTAAACCACCAATTTCTT+TGG	+	chr1_1:58430639-58430658	Msa0031650:CDS	30.0%

Showing 1 to 10 of 148 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	58429810	58430741	58429810	ID=Msa0031650;Name=Msa0031650
chr1_1	mRNA	58429810	58430741	58429810	ID=Msa0031650-mRNA-1;Parent=Msa0031650;Name=Msa0031650-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|1\|1\|2\|0\|222
chr1_1	exon	58429810	58429927	58429810	ID=Msa0031650-mRNA-1:exon:17836;Parent=Msa0031650-mRNA-1
chr1_1	exon	58430191	58430741	58430191	ID=Msa0031650-mRNA-1:exon:17837;Parent=Msa0031650-mRNA-1
chr1_1	CDS	58429810	58429927	58429810	ID=Msa0031650-mRNA-1:cds;Parent=Msa0031650-mRNA-1
chr1_1	CDS	58430191	58430741	58430191	ID=Msa0031650-mRNA-1:cds;Parent=Msa0031650-mRNA-1

Gene Sequence

>Msa0031650

ATGGGAGTTTTTTACTTCATCGTTGCCTTATTGGCTGTAGCATCATCTGTTGGTTTTGCCTATGATCCCAGCCCATTGCAAGACTTTTGTGTTGCAATCAATGATACCAAAACTGGTGTGTTCGTGAATGGAAAATTTTGCAAAGATCCTAAGCTTGCAAATGCGGATGATTTCTTCTTTCAAGGATTGGGACCTGGGAATACTTCAAATCCACTCGGATCTAAAGTGACTCCAGTGGCGGTTAATGAAATATTAGGACTCAACACACTTGGTATATCTTTGGCCCGCGTCGATTTTGCACCAAAAGGTCTAAATCCTCCTCACACTCACCCTCGAGGTACTGAGATTCTTGTAGTTTTGGAAGGTACGCTTTATGTTGGATTCGTTACCTCGAATCAAGACAATAACCGTCTCTTCACCAAAGTATTGAACAAAGGCGATGTATTTGTGTTTCCAATTGGTCTCATTCACTTCCAATTGAACGTTGGTTATGGGGAGGCTATTGCCATTGCTGGTCTTAGTAGCCAAAACCCTGGAGTGATTACCATAGCAAATGCTGTGTTTGGATCTAAACCACCAATTTCTTTGGAAGTTCTCACCAAAGCTTTTCAAGTGGATAAAAATGTAATCGACTATCTTCAAAAGCAATTCTGGTACAACAATAGTTAA

Protein sequence

>Msa0031650

MGVFYFIVALLAVASSVGFAYDPSPLQDFCVAINDTKTGVFVNGKFCKDPKLANADDFFFQGLGPGNTSNPLGSKVTPVAVNEILGLNTLGISLARVDFAPKGLNPPHTHPRGTEILVVLEGTLYVGFVTSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGEAIAIAGLSSQNPGVITIANAVFGSKPPISLEVLTKAFQVDKNVIDYLQKQFWYNNS*