Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256300 | XP_013457442.1 | 96.356 | 247 | 9 | 0 | 1 | 247 | 1 | 247 | 8.19e-169 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256300 | sp|Q9SWB8|CAMT2_EUCGL | 68.033 | 244 | 78 | 0 | 5 | 248 | 4 | 247 | 3.22e-127 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011010 | Msa1256300 | 0.802825 | 4.667389e-49 | -8.615850e-47 |
| Msa0011040 | Msa1256300 | 0.810474 | 1.132095e-50 | -8.615850e-47 |
| Msa0031650 | Msa1256300 | 0.802096 | 6.597203e-49 | -8.615850e-47 |
| Msa0048380 | Msa1256300 | 0.816056 | 6.732276e-52 | -8.615850e-47 |
| Msa0048950 | Msa1256300 | 0.804288 | 2.320845e-49 | -8.615850e-47 |
| Msa0059880 | Msa1256300 | 0.804939 | 1.697776e-49 | -8.615850e-47 |
| Msa0074620 | Msa1256300 | 0.813990 | 1.934920e-51 | -8.615850e-47 |
| Msa0085710 | Msa1256300 | 0.805213 | 1.487576e-49 | -8.615850e-47 |
| Msa0604280 | Msa1256300 | 0.818569 | 1.830347e-52 | -8.615850e-47 |
| Msa0605470 | Msa1256300 | 0.810763 | 9.804038e-51 | -8.615850e-47 |
| Msa0651820 | Msa1256300 | 0.817445 | 3.284801e-52 | -8.615850e-47 |
| Msa0655370 | Msa1256300 | 0.813092 | 3.048236e-51 | -8.615850e-47 |
| Msa0670360 | Msa1256300 | 0.819260 | 1.274971e-52 | -8.615850e-47 |
| Msa0678620 | Msa1256300 | 0.815972 | 7.028700e-52 | -8.615850e-47 |
| Msa0716980 | Msa1256300 | 0.804795 | 1.819840e-49 | -8.615850e-47 |
| Msa0727480 | Msa1256300 | 0.801687 | 8.005187e-49 | -8.615850e-47 |
| Msa0735130 | Msa1256300 | 0.801934 | 7.123852e-49 | -8.615850e-47 |
| Msa0758150 | Msa1256300 | 0.802929 | 4.443716e-49 | -8.615850e-47 |
| Msa0768670 | Msa1256300 | 0.808760 | 2.643741e-50 | -8.615850e-47 |
| Msa0150910 | Msa1256300 | 0.800494 | 1.404127e-48 | -8.615850e-47 |
| Msa0160580 | Msa1256300 | 0.808844 | 2.536625e-50 | -8.615850e-47 |
| Msa0163340 | Msa1256300 | 0.801109 | 1.051522e-48 | -8.615850e-47 |
| Msa0170990 | Msa1256300 | 0.811273 | 7.604021e-51 | -8.615850e-47 |
| Msa0171740 | Msa1256300 | 0.808614 | 2.840113e-50 | -8.615850e-47 |
| Msa0175060 | Msa1256300 | 0.813496 | 2.485485e-51 | -8.615850e-47 |
| Msa1256300 | Msa1296490 | 0.862561 | 4.645746e-64 | -8.615850e-47 |
| Msa1256300 | Msa1299310 | 0.802633 | 5.115075e-49 | -8.615850e-47 |
| Msa1256300 | Msa1300570 | 0.811232 | 7.759244e-51 | -8.615850e-47 |
| Msa1256300 | Msa1349420 | 0.815620 | 8.420716e-52 | -8.615850e-47 |
| Msa1256300 | Msa1377190 | 0.802360 | 5.822113e-49 | -8.615850e-47 |
| Msa1256300 | Msa1378950 | 0.808576 | 2.894073e-50 | -8.615850e-47 |
| Msa1256300 | Msa1417220 | 0.817527 | 3.149261e-52 | -8.615850e-47 |
| Msa1256300 | Msa1459610 | 0.801946 | 7.082323e-49 | -8.615850e-47 |
| Msa0366510 | Msa1256300 | 0.803504 | 3.377299e-49 | -8.615850e-47 |
| Msa0401420 | Msa1256300 | 0.804351 | 2.252290e-49 | -8.615850e-47 |
| Msa0414480 | Msa1256300 | 0.811998 | 5.288991e-51 | -8.615850e-47 |
| Msa0464310 | Msa1256300 | 0.811156 | 8.058527e-51 | -8.615850e-47 |
| Msa0464620 | Msa1256300 | 0.801787 | 7.636617e-49 | -8.615850e-47 |
| Msa0985700 | Msa1256300 | 0.810626 | 1.049927e-50 | -8.615850e-47 |
| Msa0996990 | Msa1256300 | 0.807319 | 5.357261e-50 | -8.615850e-47 |
| Msa1021620 | Msa1256300 | 0.801494 | 8.767918e-49 | -8.615850e-47 |
| Msa1026050 | Msa1256300 | 0.820315 | 7.321266e-53 | -8.615850e-47 |
| Msa1031060 | Msa1256300 | 0.807365 | 5.238012e-50 | -8.615850e-47 |
| Msa1040330 | Msa1256300 | 0.813878 | 2.047452e-51 | -8.615850e-47 |
| Msa1061670 | Msa1256300 | 0.832594 | 8.648906e-56 | -8.615850e-47 |
| Msa1064940 | Msa1256300 | 0.818081 | 2.361302e-52 | -8.615850e-47 |
| Msa1106960 | Msa1256300 | 0.834182 | 3.474764e-56 | -8.615850e-47 |
| Msa0243990 | Msa1256300 | 0.803463 | 3.445400e-49 | -8.615850e-47 |
| Msa0244310 | Msa1256300 | 0.802667 | 5.033170e-49 | -8.615850e-47 |
| Msa0350180 | Msa1256300 | 0.801822 | 7.510371e-49 | -8.615850e-47 |
| Msa0357470 | Msa1256300 | 0.824643 | 7.224158e-54 | -8.615850e-47 |
| Msa0357510 | Msa1256300 | 0.817330 | 3.488139e-52 | -8.615850e-47 |
| Msa0357530 | Msa1256300 | 0.829713 | 4.413897e-55 | -8.615850e-47 |
| Msa0357560 | Msa1256300 | 0.809204 | 2.123468e-50 | -8.615850e-47 |
| Msa1109890 | Msa1256300 | 0.804475 | 2.122147e-49 | -8.615850e-47 |
| Msa1115900 | Msa1256300 | 0.814623 | 1.402229e-51 | -8.615850e-47 |
| Msa1119670 | Msa1256300 | 0.812371 | 4.385161e-51 | -8.615850e-47 |
| Msa1160540 | Msa1256300 | 0.811424 | 7.050071e-51 | -8.615850e-47 |
| Msa1164240 | Msa1256300 | 0.805934 | 1.050215e-49 | -8.615850e-47 |
| Msa1165860 | Msa1256300 | 0.801175 | 1.019177e-48 | -8.615850e-47 |
| Msa1191270 | Msa1256300 | 0.811869 | 5.641298e-51 | -8.615850e-47 |
| Msa1208050 | Msa1256300 | 0.855976 | 4.393025e-62 | -8.615850e-47 |
| Msa1208140 | Msa1256300 | 0.863114 | 3.135801e-64 | -8.615850e-47 |
| Msa1211160 | Msa1256300 | 0.809987 | 1.442117e-50 | -8.615850e-47 |
| Msa1211320 | Msa1256300 | 0.815710 | 8.042721e-52 | -8.615850e-47 |
| Msa1223990 | Msa1256300 | 0.806196 | 9.248972e-50 | -8.615850e-47 |
| Msa0515130 | Msa1256300 | 0.800241 | 1.580547e-48 | -8.615850e-47 |
| Msa0531040 | Msa1256300 | 0.816756 | 4.693336e-52 | -8.615850e-47 |
| Msa0531080 | Msa1256300 | 0.809469 | 1.863316e-50 | -8.615850e-47 |
| Msa0535570 | Msa1256300 | 0.822996 | 1.756926e-53 | -8.615850e-47 |
| Msa0554660 | Msa1256300 | 0.812737 | 3.647177e-51 | -8.615850e-47 |
| Msa0561830 | Msa1256300 | 0.819529 | 1.107177e-52 | -8.615850e-47 |
| Msa0587930 | Msa1256300 | 0.838520 | 2.739005e-57 | -8.615850e-47 |
| Msa0589740 | Msa1256300 | 0.814579 | 1.433684e-51 | -8.615850e-47 |
| Msa0591490 | Msa1256300 | 0.809392 | 1.935592e-50 | -8.615850e-47 |
| Msa0597820 | Msa1256300 | 0.808942 | 2.417070e-50 | -8.615850e-47 |
| Msa0854840 | Msa1256300 | 0.803312 | 3.702278e-49 | -8.615850e-47 |
| Msa0883640 | Msa1256300 | 0.808375 | 3.193637e-50 | -8.615850e-47 |
| Msa0886370 | Msa1256300 | 0.803218 | 3.872063e-49 | -8.615850e-47 |
| Msa0890210 | Msa1256300 | 0.802824 | 4.669298e-49 | -8.615850e-47 |
| Msa0896920 | Msa1256300 | 0.829060 | 6.356742e-55 | -8.615850e-47 |
| Msa0910830 | Msa1256300 | 0.805363 | 1.383979e-49 | -8.615850e-47 |
| Msa0913500 | Msa1256300 | 0.800456 | 1.428969e-48 | -8.615850e-47 |
| Msa0913550 | Msa1256300 | 0.811513 | 6.742473e-51 | -8.615850e-47 |
| Msa0924360 | Msa1256300 | 0.832368 | 9.838746e-56 | -8.615850e-47 |
| Msa0950090 | Msa1256300 | 0.803882 | 2.819390e-49 | -8.615850e-47 |
| Msa0951150 | Msa1256300 | 0.806419 | 8.301639e-50 | -8.615850e-47 |
| Msa0960090 | Msa1256300 | 0.808332 | 3.262002e-50 | -8.615850e-47 |
| Msa0962290 | Msa1256300 | 0.800020 | 1.753134e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256300 | MtrunA17_Chr4g0053241 | 96.356 | 247 | 9 | 0 | 1 | 247 | 1 | 247 | 7.53e-173 | 476 |
| Msa1256300 | MtrunA17_Chr4g0053031 | 84.677 | 248 | 38 | 0 | 1 | 248 | 1 | 248 | 3.56e-162 | 449 |
| Msa1256300 | MtrunA17_Chr4g0053331 | 79.352 | 247 | 46 | 1 | 1 | 247 | 1 | 242 | 1.72e-148 | 414 |
| Msa1256300 | MtrunA17_Chr4g0053021 | 81.781 | 247 | 43 | 1 | 1 | 247 | 1 | 245 | 1.50e-142 | 399 |
| Msa1256300 | MtrunA17_Chr4g0044581 | 68.033 | 244 | 73 | 1 | 4 | 247 | 8 | 246 | 6.40e-126 | 357 |
| Msa1256300 | MtrunA17_Chr8g0344401 | 58.009 | 231 | 95 | 1 | 18 | 246 | 3 | 233 | 4.79e-91 | 268 |
| Msa1256300 | MtrunA17_Chr8g0389361 | 55.804 | 224 | 98 | 1 | 24 | 247 | 17 | 239 | 1.39e-82 | 247 |
| Msa1256300 | MtrunA17_Chr6g0487981 | 56.637 | 226 | 95 | 2 | 23 | 247 | 14 | 237 | 1.52e-82 | 246 |
| Msa1256300 | MtrunA17_Chr4g0051041 | 54.867 | 226 | 99 | 3 | 22 | 245 | 3 | 227 | 1.23e-80 | 241 |
| Msa1256300 | MtrunA17_Chr2g0312921 | 36.015 | 261 | 126 | 8 | 8 | 246 | 56 | 297 | 5.11e-46 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256300 | AT4G34050.1 | 68.163 | 245 | 77 | 1 | 5 | 248 | 15 | 259 | 1.54e-126 | 359 |
| Msa1256300 | AT4G34050.3 | 68.163 | 245 | 77 | 1 | 5 | 248 | 42 | 286 | 1.89e-126 | 360 |
| Msa1256300 | AT4G26220.1 | 57.080 | 226 | 96 | 1 | 22 | 247 | 7 | 231 | 2.86e-93 | 274 |
| Msa1256300 | AT1G67980.1 | 56.140 | 228 | 94 | 3 | 22 | 247 | 8 | 231 | 7.42e-87 | 258 |
| Msa1256300 | AT1G67990.1 | 52.137 | 234 | 107 | 3 | 16 | 247 | 2 | 232 | 2.31e-79 | 239 |
| Msa1256300 | AT1G24735.1 | 53.304 | 227 | 100 | 4 | 24 | 247 | 16 | 239 | 1.08e-76 | 232 |
| Msa1256300 | AT1G24735.3 | 53.684 | 190 | 84 | 3 | 59 | 247 | 8 | 194 | 2.74e-65 | 201 |
| Msa1256300 | AT1G24735.2 | 53.684 | 190 | 84 | 3 | 59 | 247 | 104 | 290 | 2.73e-64 | 202 |
| Msa1256300 | AT4G34050.2 | 67.227 | 119 | 39 | 0 | 130 | 248 | 30 | 148 | 4.08e-59 | 184 |
| Msa1256300 | AT3G62000.1 | 40.969 | 227 | 104 | 8 | 30 | 246 | 71 | 277 | 6.55e-47 | 157 |
| Msa1256300 | AT1G67980.2 | 46.988 | 166 | 84 | 2 | 82 | 247 | 2 | 163 | 1.94e-46 | 152 |
| Msa1256300 | AT3G61990.1 | 39.819 | 221 | 112 | 6 | 30 | 246 | 86 | 289 | 4.27e-44 | 150 |
| Msa1256300 | AT3G62000.2 | 40.553 | 217 | 99 | 8 | 30 | 236 | 71 | 267 | 2.84e-40 | 142 |
Find 55 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAGAACACAATGGAAAT+TGG | 0.290180 | 8_2:+56183966 | Msa1256300:CDS |
| CTCTTATTAGGTATTGGCTT+TGG | 0.301329 | 8_2:+56185150 | Msa1256300:intron |
| CACCTATGATGGATTTCATT+AGG | 0.322716 | 8_2:+56185614 | Msa1256300:CDS |
| TGATTGATCTTGTTAAGGTT+GGG | 0.361490 | 8_2:+56185533 | Msa1256300:CDS |
| TTCAAGCAAGGGTGTTCTCT+TGG | 0.372126 | 8_2:-56183255 | None:intergenic |
| TCGGATACGATAATACCTTA+TGG | 0.375086 | 8_2:+56185563 | Msa1256300:CDS |
| CAAGAGATGGCTATCAATAA+TGG | 0.384566 | 8_2:+56182792 | None:intergenic |
| ATGATTGATCTTGTTAAGGT+TGG | 0.391503 | 8_2:+56185532 | Msa1256300:CDS |
| AAGAGAACACCCTTGCTTGA+AGG | 0.414633 | 8_2:+56183257 | Msa1256300:CDS |
| GCCCTTGCTCTTCCATCTGA+TGG | 0.437597 | 8_2:+56184020 | Msa1256300:CDS |
| TGAAGGAGTTCATCAAGAAA+AGG | 0.438463 | 8_2:-56185265 | None:intergenic |
| CGCCACTGCTCCACTCCATA+AGG | 0.449953 | 8_2:-56185578 | None:intergenic |
| GAGGATGATTGATCTTGTTA+AGG | 0.466309 | 8_2:+56185528 | Msa1256300:CDS |
| TCCATCTGATGCACCTATGA+TGG | 0.468925 | 8_2:+56185603 | Msa1256300:CDS |
| GAAGCAAACATACATCTTGA+AGG | 0.470286 | 8_2:-56185282 | None:intergenic |
| TTCCTAATGAAATCCATCAT+AGG | 0.472967 | 8_2:-56185616 | None:intergenic |
| GATTGATCTTGTTAAGGTTG+GGG | 0.475443 | 8_2:+56185534 | Msa1256300:CDS |
| TTAGTTGATGCGGCGACATA+AGG | 0.477226 | 8_2:-56185728 | None:intergenic |
| TCATCAAGAAAAGGGAGAGC+AGG | 0.480559 | 8_2:-56185256 | None:intergenic |
| AGCCTTACCTTTCCATCAGA+TGG | 0.483507 | 8_2:-56184032 | None:intergenic |
| TATAAGTTGTCCTTCATCAC+CGG | 0.497804 | 8_2:-56183919 | None:intergenic |
| TTGCTCACAAGATTGACTTT+AGG | 0.499180 | 8_2:+56185227 | Msa1256300:CDS |
| CATCACCGGGTATAGCCATA+TGG | 0.500442 | 8_2:-56183905 | None:intergenic |
| GAGTCGAGAATACTATGAGC+TGG | 0.500510 | 8_2:+56185177 | Msa1256300:CDS |
| GAAGGAGTTCATCAAGAAAA+GGG | 0.500517 | 8_2:-56185264 | None:intergenic |
| AGATGGAAGAGCAAGGGCAG+TGG | 0.505752 | 8_2:-56184015 | None:intergenic |
| TGTCAACTCTCTATAGCTGA+TGG | 0.510176 | 8_2:+56185700 | Msa1256300:CDS |
| ATGGCTATACCCGGTGATGA+AGG | 0.518965 | 8_2:+56183909 | Msa1256300:CDS |
| GATTTGCGTCTCCGATGAGT+TGG | 0.538504 | 8_2:-56182830 | None:intergenic |
| TGCTCTTCCATCTGATGGAA+AGG | 0.540500 | 8_2:+56184025 | Msa1256300:CDS |
| TCACGGAGCTCCTTCAAGCA+AGG | 0.557059 | 8_2:-56183267 | None:intergenic |
| GTCAACTCTCTATAGCTGAT+GGG | 0.563049 | 8_2:+56185701 | Msa1256300:CDS |
| ATAAGTTGTCCTTCATCACC+GGG | 0.570862 | 8_2:-56183918 | None:intergenic |
| ATTGATCTTGTTAAGGTTGG+GGG | 0.571837 | 8_2:+56185535 | Msa1256300:CDS |
| CACGGAGCTCCTTCAAGCAA+GGG | 0.571847 | 8_2:-56183266 | None:intergenic |
| CACAAGATTGACTTTAGGCA+AGG | 0.576679 | 8_2:+56185232 | Msa1256300:CDS |
| ATATTGAAACAGGAACCATA+TGG | 0.577851 | 8_2:+56183890 | Msa1256300:intron |
| GATAAAGTGCATCACTCTGA+AGG | 0.581770 | 8_2:-56182869 | None:intergenic |
| TCCATCATAGGTGCATCAGA+TGG | 0.582973 | 8_2:-56185604 | None:intergenic |
| TACGATAATACCTTATGGAG+TGG | 0.587648 | 8_2:+56185568 | Msa1256300:CDS |
| AGGACAACTTATAAGCATGT+TGG | 0.591106 | 8_2:+56183929 | Msa1256300:CDS |
| TACCTTATGGAGTGGAGCAG+TGG | 0.591555 | 8_2:+56185576 | Msa1256300:CDS |
| AGTCGAGAATACTATGAGCT+GGG | 0.593435 | 8_2:+56185178 | Msa1256300:CDS |
| TTCCATCAGATGGAAGAGCA+AGG | 0.602361 | 8_2:-56184022 | None:intergenic |
| TCCATCAGATGGAAGAGCAA+GGG | 0.613310 | 8_2:-56184021 | None:intergenic |
| CTTATGGAGTGGAGCAGTGG+CGG | 0.615083 | 8_2:+56185579 | Msa1256300:CDS |
| GCTCATAGTATTCTCGACTC+AGG | 0.618788 | 8_2:-56185174 | None:intergenic |
| GAACAACAAAACCAACTCAT+CGG | 0.626049 | 8_2:+56182819 | Msa1256300:CDS |
| ATGGAAATTGGTGTGTACAC+TGG | 0.640887 | 8_2:+56183978 | Msa1256300:CDS |
| AAATGAGAGATTAGTTGATG+CGG | 0.647761 | 8_2:-56185738 | None:intergenic |
| TATCAATGCAAAGAACACAA+TGG | 0.649047 | 8_2:+56183959 | Msa1256300:CDS |
| GATGGCTATCAATAATGGAG+AGG | 0.655271 | 8_2:+56182797 | None:intergenic |
| GATTTCATTAGGAATTTACG+TGG | 0.656840 | 8_2:+56185625 | Msa1256300:CDS |
| AGGAACCATATGGCTATACC+CGG | 0.667991 | 8_2:+56183900 | Msa1256300:intron |
| ACTACTTAAACTATCACGTG+AGG | 0.676055 | 8_2:+56185509 | Msa1256300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTGTTTTTTTATTATA+AGG | - | chr8_2:56183343-56183362 | None:intergenic | 10.0% |
| !! | TCAACAAAAAAAAAAAAACT+TGG | + | chr8_2:56183199-56183218 | Msa1256300:intron | 15.0% |
| !! | CAACAAAAAAAAAAAAACTT+GGG | + | chr8_2:56183200-56183219 | Msa1256300:intron | 15.0% |
| !! | TCTCAAAATAACATATATTT+GGG | - | chr8_2:56183409-56183428 | None:intergenic | 15.0% |
| !! | TTCTCAAAATAACATATATT+TGG | - | chr8_2:56183410-56183429 | None:intergenic | 15.0% |
| !!! | TATATATTTTTTCATAAGCA+TGG | - | chr8_2:56183790-56183809 | None:intergenic | 15.0% |
| !! | AGTGTATAATCTTATAAATA+AGG | - | chr8_2:56184078-56184097 | None:intergenic | 15.0% |
| !!! | AACAAAGAAATACTTTTAAA+AGG | - | chr8_2:56184727-56184746 | None:intergenic | 15.0% |
| !!! | AATTGATAATGAAATAAAGT+TGG | - | chr8_2:56185316-56185335 | None:intergenic | 15.0% |
| !! | GATTAATTAACTAATTGAAT+TGG | + | chr8_2:56185416-56185435 | Msa1256300:intron | 15.0% |
| !!! | TTATTTTCCTGTAAAATTAA+TGG | - | chr8_2:56185445-56185464 | None:intergenic | 15.0% |
| !! | GATAAATGAGAAAATAATAG+TGG | - | chr8_2:56182974-56182993 | None:intergenic | 20.0% |
| !!! | TTTTCTCATTTATCTTGTTT+CGG | + | chr8_2:56182980-56182999 | Msa1256300:intron | 20.0% |
| !! | AAATATAAGAGGCTTATAAT+TGG | - | chr8_2:56183153-56183172 | None:intergenic | 20.0% |
| !! | GTGTAATAATCAAATATAAG+AGG | - | chr8_2:56183164-56183183 | None:intergenic | 20.0% |
| !!! | ATATTCCCAACAAATATTTT+TGG | + | chr8_2:56183368-56183387 | Msa1256300:intron | 20.0% |
| !! | TTGTTCCAAAAATATTTGTT+GGG | - | chr8_2:56183376-56183395 | None:intergenic | 20.0% |
| !! | TTTGTTCCAAAAATATTTGT+TGG | - | chr8_2:56183377-56183396 | None:intergenic | 20.0% |
| !!! | TTGTTTTCACTTTTTTAAAG+TGG | + | chr8_2:56183434-56183453 | Msa1256300:intron | 20.0% |
| !!! | TGTTTTCACTTTTTTAAAGT+GGG | + | chr8_2:56183435-56183454 | Msa1256300:intron | 20.0% |
| !!! | ATGAATTTTAGTAATCTCAA+AGG | + | chr8_2:56183832-56183851 | Msa1256300:intron | 20.0% |
| !! | ATCAATATGTATATTGAAAC+AGG | + | chr8_2:56183880-56183899 | Msa1256300:intron | 20.0% |
| !!! | ATTTTACTTAATTGCAGTTT+TGG | + | chr8_2:56184155-56184174 | Msa1256300:intron | 20.0% |
| !! | AAAATTACGCGATTAAAAAT+AGG | - | chr8_2:56184214-56184233 | None:intergenic | 20.0% |
| !!! | TATTTTTAATCGCGTAATTT+TGG | + | chr8_2:56184213-56184232 | Msa1256300:intron | 20.0% |
| !! | GTTCTTATAATTAGAAATGA+AGG | - | chr8_2:56184677-56184696 | None:intergenic | 20.0% |
| !!! | ATTTTACAGGAAAATAACAA+AGG | + | chr8_2:56185448-56185467 | Msa1256300:intron | 20.0% |
| !!! | TTTTACAGGAAAATAACAAA+GGG | + | chr8_2:56185449-56185468 | Msa1256300:intron | 20.0% |
| ! | AATAGATGACTAGATAATTG+TGG | - | chr8_2:56182901-56182920 | None:intergenic | 25.0% |
| ! | CATTCATTAAATGATGTATG+TGG | + | chr8_2:56183038-56183057 | Msa1256300:intron | 25.0% |
| ! | GAATTCAAGTATATACTACT+TGG | - | chr8_2:56183737-56183756 | None:intergenic | 25.0% |
| ! | GAATTCTTTGCTAATTTGAT+AGG | + | chr8_2:56183751-56183770 | Msa1256300:intron | 25.0% |
| !!! | TAATCTCAAAGGTTTAGTTT+TGG | + | chr8_2:56183843-56183862 | Msa1256300:intron | 25.0% |
| ! | ATAAGGATAGATGAGTAATA+AGG | - | chr8_2:56184061-56184080 | None:intergenic | 25.0% |
| ! | AAATATGAAGACCATAATTG+TGG | + | chr8_2:56184516-56184535 | Msa1256300:intron | 25.0% |
| !! | TTTTGACAAAACCACAATTA+TGG | - | chr8_2:56184530-56184549 | None:intergenic | 25.0% |
| !!! | TTTCACTTTTTTAAAGTGGG+TGG | + | chr8_2:56183438-56183457 | Msa1256300:intron | 30.0% |
| ATATTGAAACAGGAACCATA+TGG | + | chr8_2:56183890-56183909 | Msa1256300:intron | 30.0% | |
| TATCAATGCAAAGAACACAA+TGG | + | chr8_2:56183959-56183978 | Msa1256300:CDS | 30.0% | |
| GTTGCGGTTCTATTTAAATA+AGG | - | chr8_2:56184183-56184202 | None:intergenic | 30.0% | |
| ATTTAAATAGAACCGCAACT+TGG | + | chr8_2:56184184-56184203 | Msa1256300:intron | 30.0% | |
| ATTACGCGATTAAAAATAGG+AGG | - | chr8_2:56184211-56184230 | None:intergenic | 30.0% | |
| ! | AGTCAACGAATTTGAAATGA+GGG | - | chr8_2:56184240-56184259 | None:intergenic | 30.0% |
| ! | TAGTCAACGAATTTGAAATG+AGG | - | chr8_2:56184241-56184260 | None:intergenic | 30.0% |
| !! | AACCATCTAATTTGATGATG+TGG | - | chr8_2:56184440-56184459 | None:intergenic | 30.0% |
| !!! | TATTTCGAGTTGCTCAATTT+TGG | - | chr8_2:56184501-56184520 | None:intergenic | 30.0% |
| ! | TACCAATATTGAACGTTTTC+CGG | - | chr8_2:56184892-56184911 | None:intergenic | 30.0% |
| ATCATTGTCTCTCTCTTATT+AGG | + | chr8_2:56185138-56185157 | Msa1256300:intron | 30.0% | |
| ATGCATGGATGAAATCAAAT+TGG | - | chr8_2:56185363-56185382 | None:intergenic | 30.0% | |
| !! | TTGGTGTCCATTAATTTTAC+AGG | + | chr8_2:56185435-56185454 | Msa1256300:intron | 30.0% |
| ATGATTGATCTTGTTAAGGT+TGG | + | chr8_2:56185532-56185551 | Msa1256300:CDS | 30.0% | |
| TGATTGATCTTGTTAAGGTT+GGG | + | chr8_2:56185533-56185552 | Msa1256300:CDS | 30.0% | |
| TTCCTAATGAAATCCATCAT+AGG | - | chr8_2:56185619-56185638 | None:intergenic | 30.0% | |
| GATTTCATTAGGAATTTACG+TGG | + | chr8_2:56185625-56185644 | Msa1256300:CDS | 30.0% | |
| GAACAACAAAACCAACTCAT+CGG | + | chr8_2:56182819-56182838 | Msa1256300:CDS | 35.0% | |
| TATAAGTTGTCCTTCATCAC+CGG | - | chr8_2:56183922-56183941 | None:intergenic | 35.0% | |
| AGGACAACTTATAAGCATGT+TGG | + | chr8_2:56183929-56183948 | Msa1256300:CDS | 35.0% | |
| GCAAAGAACACAATGGAAAT+TGG | + | chr8_2:56183966-56183985 | Msa1256300:CDS | 35.0% | |
| AGGATAGATGAGTAATAAGG+AGG | - | chr8_2:56184058-56184077 | None:intergenic | 35.0% | |
| TGACATGACTTGAAAACGAA+TGG | - | chr8_2:56184405-56184424 | None:intergenic | 35.0% | |
| TGCCACATCATCAAATTAGA+TGG | + | chr8_2:56184435-56184454 | Msa1256300:intron | 35.0% | |
| !!! | TGTGGTTTTGTCAAAAGATG+TGG | + | chr8_2:56184534-56184553 | Msa1256300:intron | 35.0% |
| GGAAATGTTTGATGCTTCTT+GGG | + | chr8_2:56184987-56185006 | Msa1256300:intron | 35.0% | |
| GAAATGTTTGATGCTTCTTG+GGG | + | chr8_2:56184988-56185007 | Msa1256300:intron | 35.0% | |
| TATCTACTCGACAATTCATC+CGG | - | chr8_2:56185037-56185056 | None:intergenic | 35.0% | |
| GTCTCTCTCTTATTAGGTAT+TGG | + | chr8_2:56185144-56185163 | Msa1256300:intron | 35.0% | |
| !! | CTCTTATTAGGTATTGGCTT+TGG | + | chr8_2:56185150-56185169 | Msa1256300:intron | 35.0% |
| ! | TTGCTCACAAGATTGACTTT+AGG | + | chr8_2:56185227-56185246 | Msa1256300:CDS | 35.0% |
| GAAGGAGTTCATCAAGAAAA+GGG | - | chr8_2:56185267-56185286 | None:intergenic | 35.0% | |
| TGAAGGAGTTCATCAAGAAA+AGG | - | chr8_2:56185268-56185287 | None:intergenic | 35.0% | |
| GAAGCAAACATACATCTTGA+AGG | - | chr8_2:56185285-56185304 | None:intergenic | 35.0% | |
| !!! | GACGTTTGACTTTGTTTTTG+TGG | + | chr8_2:56185471-56185490 | Msa1256300:CDS | 35.0% |
| ACTACTTAAACTATCACGTG+AGG | + | chr8_2:56185509-56185528 | Msa1256300:CDS | 35.0% | |
| GAGGATGATTGATCTTGTTA+AGG | + | chr8_2:56185528-56185547 | Msa1256300:CDS | 35.0% | |
| GATTGATCTTGTTAAGGTTG+GGG | + | chr8_2:56185534-56185553 | Msa1256300:CDS | 35.0% | |
| ATTGATCTTGTTAAGGTTGG+GGG | + | chr8_2:56185535-56185554 | Msa1256300:CDS | 35.0% | |
| TCGGATACGATAATACCTTA+TGG | + | chr8_2:56185563-56185582 | Msa1256300:CDS | 35.0% | |
| TACGATAATACCTTATGGAG+TGG | + | chr8_2:56185568-56185587 | Msa1256300:CDS | 35.0% | |
| !! | CACCTATGATGGATTTCATT+AGG | + | chr8_2:56185614-56185633 | Msa1256300:CDS | 35.0% |
| GATAAAGTGCATCACTCTGA+AGG | - | chr8_2:56182872-56182891 | None:intergenic | 40.0% | |
| ! | GGTGTTTTTCTGTCATCTCA+CGG | - | chr8_2:56183287-56183306 | None:intergenic | 40.0% |
| AGATGACAGAAAAACACCCT+CGG | + | chr8_2:56183289-56183308 | Msa1256300:CDS | 40.0% | |
| ACAACGTATGATCTTACCGA+GGG | - | chr8_2:56183308-56183327 | None:intergenic | 40.0% | |
| AACAACGTATGATCTTACCG+AGG | - | chr8_2:56183309-56183328 | None:intergenic | 40.0% | |
| !!! | CTTTTTTAAAGTGGGTGGAG+TGG | + | chr8_2:56183443-56183462 | Msa1256300:intron | 40.0% |
| ATAAGTTGTCCTTCATCACC+GGG | - | chr8_2:56183921-56183940 | None:intergenic | 40.0% | |
| ATGGAAATTGGTGTGTACAC+TGG | + | chr8_2:56183978-56183997 | Msa1256300:CDS | 40.0% | |
| TTCCATCTGATGGAAAGGTA+AGG | + | chr8_2:56184030-56184049 | Msa1256300:intron | 40.0% | |
| AAAATAGGAGGACCAAGTTG+CGG | - | chr8_2:56184199-56184218 | None:intergenic | 40.0% | |
| !! | ACTAAAAGCATCTCCAAAGC+CGG | + | chr8_2:56184870-56184889 | Msa1256300:intron | 40.0% |
| ! | TATTGAACGTTTTCCGGCTT+TGG | - | chr8_2:56184886-56184905 | None:intergenic | 40.0% |
| AGCCGGAAAACGTTCAATAT+TGG | + | chr8_2:56184887-56184906 | Msa1256300:intron | 40.0% | |
| CGGAAATGTTTGATGCTTCT+TGG | + | chr8_2:56184986-56185005 | Msa1256300:intron | 40.0% | |
| TCGAGTAGATAGATCAGATC+CGG | + | chr8_2:56185046-56185065 | Msa1256300:intron | 40.0% | |
| AGTCGAGAATACTATGAGCT+GGG | + | chr8_2:56185178-56185197 | Msa1256300:CDS | 40.0% | |
| ACTGCCCATGATTGAAAAAG+CGG | + | chr8_2:56185201-56185220 | Msa1256300:CDS | 40.0% | |
| !!! | ACTCCCGCTTTTTCAATCAT+GGG | - | chr8_2:56185208-56185227 | None:intergenic | 40.0% |
| !!! | AACTCCCGCTTTTTCAATCA+TGG | - | chr8_2:56185209-56185228 | None:intergenic | 40.0% |
| ! | CACAAGATTGACTTTAGGCA+AGG | + | chr8_2:56185232-56185251 | Msa1256300:CDS | 40.0% |
| CTAAGTTTGCGAAACATGCA+TGG | - | chr8_2:56185378-56185397 | None:intergenic | 40.0% | |
| TGTCAACTCTCTATAGCTGA+TGG | + | chr8_2:56185700-56185719 | Msa1256300:CDS | 40.0% | |
| GTCAACTCTCTATAGCTGAT+GGG | + | chr8_2:56185701-56185720 | Msa1256300:CDS | 40.0% | |
| !! | TTCAAGCAAGGGTGTTCTCT+TGG | - | chr8_2:56183258-56183277 | None:intergenic | 45.0% |
| AAGAGAACACCCTTGCTTGA+AGG | + | chr8_2:56183257-56183276 | Msa1256300:CDS | 45.0% | |
| AGGAACCATATGGCTATACC+CGG | + | chr8_2:56183900-56183919 | Msa1256300:intron | 45.0% | |
| TCCATCAGATGGAAGAGCAA+GGG | - | chr8_2:56184024-56184043 | None:intergenic | 45.0% | |
| TTCCATCAGATGGAAGAGCA+AGG | - | chr8_2:56184025-56184044 | None:intergenic | 45.0% | |
| TGCTCTTCCATCTGATGGAA+AGG | + | chr8_2:56184025-56184044 | Msa1256300:CDS | 45.0% | |
| AGCCTTACCTTTCCATCAGA+TGG | - | chr8_2:56184035-56184054 | None:intergenic | 45.0% | |
| GATGAGCGAGAATGAGAGTA+GGG | - | chr8_2:56184967-56184986 | None:intergenic | 45.0% | |
| CTACTCTCATTCTCGCTCAT+CGG | + | chr8_2:56184966-56184985 | Msa1256300:intron | 45.0% | |
| GCTCATAGTATTCTCGACTC+AGG | - | chr8_2:56185177-56185196 | None:intergenic | 45.0% | |
| GAGTCGAGAATACTATGAGC+TGG | + | chr8_2:56185177-56185196 | Msa1256300:CDS | 45.0% | |
| CTGCCCATGATTGAAAAAGC+GGG | + | chr8_2:56185202-56185221 | Msa1256300:CDS | 45.0% | |
| TCATCAAGAAAAGGGAGAGC+AGG | - | chr8_2:56185259-56185278 | None:intergenic | 45.0% | |
| GTTAAGGTTGGGGGACTAAT+CGG | + | chr8_2:56185544-56185563 | Msa1256300:CDS | 45.0% | |
| TCCATCTGATGCACCTATGA+TGG | + | chr8_2:56185603-56185622 | Msa1256300:CDS | 45.0% | |
| TCCATCATAGGTGCATCAGA+TGG | - | chr8_2:56185607-56185626 | None:intergenic | 45.0% | |
| ! | TTAGTTGATGCGGCGACATA+AGG | - | chr8_2:56185731-56185750 | None:intergenic | 45.0% |
| !!! | AATAATAATTTTACATAAAT+TGG | - | chr8_2:56184138-56184157 | None:intergenic | 5.0% |
| GATTTGCGTCTCCGATGAGT+TGG | - | chr8_2:56182833-56182852 | None:intergenic | 50.0% | |
| CATCACCGGGTATAGCCATA+TGG | - | chr8_2:56183908-56183927 | None:intergenic | 50.0% | |
| ATGGCTATACCCGGTGATGA+AGG | + | chr8_2:56183909-56183928 | Msa1256300:CDS | 50.0% | |
| AGGAGAAACGGGTGAAGTTG+GGG | - | chr8_2:56184942-56184961 | None:intergenic | 50.0% | |
| CAGGAGAAACGGGTGAAGTT+GGG | - | chr8_2:56184943-56184962 | None:intergenic | 50.0% | |
| ACAGGAGAAACGGGTGAAGT+TGG | - | chr8_2:56184944-56184963 | None:intergenic | 50.0% | |
| AGAGTAGGGACAGGAGAAAC+GGG | - | chr8_2:56184953-56184972 | None:intergenic | 50.0% | |
| GAGAGTAGGGACAGGAGAAA+CGG | - | chr8_2:56184954-56184973 | None:intergenic | 50.0% | |
| CGATGAGCGAGAATGAGAGT+AGG | - | chr8_2:56184968-56184987 | None:intergenic | 50.0% | |
| GATGCTTCTTGGGGCTTCTT+TGG | + | chr8_2:56184997-56185016 | Msa1256300:intron | 50.0% | |
| TTTGGCGAACGTGAAGTCAC+CGG | + | chr8_2:56185015-56185034 | Msa1256300:intron | 50.0% | |
| AGATAGATCAGATCCGGACG+CGG | + | chr8_2:56185052-56185071 | Msa1256300:intron | 50.0% | |
| TACCTTATGGAGTGGAGCAG+TGG | + | chr8_2:56185576-56185595 | Msa1256300:CDS | 50.0% | |
| CACGGAGCTCCTTCAAGCAA+GGG | - | chr8_2:56183269-56183288 | None:intergenic | 55.0% | |
| TCACGGAGCTCCTTCAAGCA+AGG | - | chr8_2:56183270-56183289 | None:intergenic | 55.0% | |
| AGATGGAAGAGCAAGGGCAG+TGG | - | chr8_2:56184018-56184037 | None:intergenic | 55.0% | |
| GCCCTTGCTCTTCCATCTGA+TGG | + | chr8_2:56184020-56184039 | Msa1256300:CDS | 55.0% | |
| ACGGGTGAAGTTGGGGCTTA+TGG | - | chr8_2:56184935-56184954 | None:intergenic | 55.0% | |
| GCGAGAATGAGAGTAGGGAC+AGG | - | chr8_2:56184962-56184981 | None:intergenic | 55.0% | |
| CTTATGGAGTGGAGCAGTGG+CGG | + | chr8_2:56185579-56185598 | Msa1256300:CDS | 55.0% | |
| GCTGTTGCTCCGCGGTGATA+CGG | + | chr8_2:56185074-56185093 | Msa1256300:intron | 60.0% | |
| AAAACATCTCCTGCCCCCGC+AGG | - | chr8_2:56185101-56185120 | None:intergenic | 60.0% | |
| CGCCACTGCTCCACTCCATA+AGG | - | chr8_2:56185581-56185600 | None:intergenic | 60.0% | |
| TCCGCGGTGATACGGACCTG+CGG | + | chr8_2:56185082-56185101 | Msa1256300:intron | 65.0% | |
| CCCGCAGGTCCGTATCACCG+CGG | - | chr8_2:56185086-56185105 | None:intergenic | 70.0% | |
| CCGCGGTGATACGGACCTGC+GGG | + | chr8_2:56185083-56185102 | Msa1256300:intron | 70.0% | |
| CGCGGTGATACGGACCTGCG+GGG | + | chr8_2:56185084-56185103 | Msa1256300:intron | 70.0% | |
| GCGGTGATACGGACCTGCGG+GGG | + | chr8_2:56185085-56185104 | Msa1256300:intron | 70.0% | |
| TGATACGGACCTGCGGGGGC+AGG | + | chr8_2:56185089-56185108 | Msa1256300:intron | 70.0% | |
| CGCGGAGCAACAGCCGCGTC+CGG | - | chr8_2:56185068-56185087 | None:intergenic | 75.0% | |
| CGGACGCGGCTGTTGCTCCG+CGG | + | chr8_2:56185066-56185085 | Msa1256300:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 56182798 | 56185750 | 56182798 | ID=Msa1256300;Name=Msa1256300 |
| chr8_2 | mRNA | 56182798 | 56185750 | 56182798 | ID=Msa1256300-mRNA-1;Parent=Msa1256300;Name=Msa1256300-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|5|0|248 |
| chr8_2 | exon | 56182798 | 56182893 | 56182798 | ID=Msa1256300-mRNA-1:exon:17316;Parent=Msa1256300-mRNA-1 |
| chr8_2 | exon | 56183231 | 56183310 | 56183231 | ID=Msa1256300-mRNA-1:exon:17317;Parent=Msa1256300-mRNA-1 |
| chr8_2 | exon | 56183902 | 56184046 | 56183902 | ID=Msa1256300-mRNA-1:exon:17318;Parent=Msa1256300-mRNA-1 |
| chr8_2 | exon | 56185160 | 56185291 | 56185160 | ID=Msa1256300-mRNA-1:exon:17319;Parent=Msa1256300-mRNA-1 |
| chr8_2 | exon | 56185457 | 56185750 | 56185457 | ID=Msa1256300-mRNA-1:exon:17320;Parent=Msa1256300-mRNA-1 |
| chr8_2 | CDS | 56182798 | 56182893 | 56182798 | ID=Msa1256300-mRNA-1:cds;Parent=Msa1256300-mRNA-1 |
| chr8_2 | CDS | 56183231 | 56183310 | 56183231 | ID=Msa1256300-mRNA-1:cds;Parent=Msa1256300-mRNA-1 |
| chr8_2 | CDS | 56183902 | 56184046 | 56183902 | ID=Msa1256300-mRNA-1:cds;Parent=Msa1256300-mRNA-1 |
| chr8_2 | CDS | 56185160 | 56185291 | 56185160 | ID=Msa1256300-mRNA-1:cds;Parent=Msa1256300-mRNA-1 |
| chr8_2 | CDS | 56185457 | 56185750 | 56185457 | ID=Msa1256300-mRNA-1:cds;Parent=Msa1256300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
