AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0531040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0531040 MtrunA17_Chr4g0004071 92.994 314 22 0 1 314 1 314 0.0 604
Msa0531040 MtrunA17_Chr4g0004061 83.492 315 51 1 1 314 1 315 0.0 554
Msa0531040 MtrunA17_Chr7g0256741 37.736 318 192 5 1 314 1 316 2.96e-77 238
Msa0531040 MtrunA17_Chr1g0148781 37.785 307 176 7 1 295 1 304 2.76e-67 213
Msa0531040 MtrunA17_Chr3g0138351 35.948 306 185 7 1 298 1 303 4.07e-62 199
Msa0531040 MtrunA17_Chr4g0009561 33.013 312 199 6 4 306 2 312 7.08e-56 184
Msa0531040 MtrunA17_Chr4g0009541 32.595 316 201 7 1 307 1 313 2.66e-53 177
Msa0531040 MtrunA17_Chr8g0348951 30.479 292 188 6 35 314 29 317 2.89e-37 135
Msa0531040 MtrunA17_Chr7g0247741 30.104 289 192 6 35 314 30 317 8.85e-33 123
Msa0531040 MtrunA17_Chr5g0407781 29.889 271 182 5 32 300 21 285 3.77e-31 118
Msa0531040 MtrunA17_Chr5g0407731 29.710 276 186 5 19 292 36 305 1.29e-29 115
Msa0531040 MtrunA17_Chr1g0184151 27.076 277 190 4 32 301 57 328 3.01e-29 114
Msa0531040 MtrunA17_Chr8g0345831 27.184 309 195 7 5 299 38 330 4.49e-28 111
Msa0531040 MtrunA17_Chr7g0265221 28.173 323 194 9 8 306 66 374 1.36e-27 110
Msa0531040 MtrunA17_Chr8g0370711 33.511 188 119 5 116 298 158 344 2.24e-27 109
Msa0531040 MtrunA17_Chr1g0184121 26.882 279 191 4 31 301 55 328 4.88e-27 108
Msa0531040 MtrunA17_Chr1g0184161 27.500 280 181 4 32 299 57 326 7.71e-27 107
Msa0531040 MtrunA17_Chr3g0128001 27.609 297 188 6 19 300 41 325 8.78e-27 107
Msa0531040 MtrunA17_Chr1g0184111 27.437 277 188 4 32 300 56 327 1.73e-26 107
Msa0531040 MtrunA17_Chr8g0371931 27.273 308 207 9 8 306 38 337 1.03e-25 105
Msa0531040 MtrunA17_Chr1g0148771 26.357 258 184 3 19 273 66 320 1.25e-25 104
Msa0531040 MtrunA17_Chr8g0384461 26.786 280 186 9 33 299 70 343 2.66e-25 103
Msa0531040 MtrunA17_Chr2g0296371 27.986 293 179 6 31 305 71 349 6.04e-25 103
Msa0531040 MtrunA17_Chr3g0130391 24.749 299 210 6 7 295 67 360 9.72e-25 102
Msa0531040 MtrunA17_Chr8g0371921 28.070 285 190 7 31 306 59 337 2.32e-24 101
Msa0531040 MtrunA17_Chr7g0242551 29.412 289 186 8 27 303 71 353 2.85e-24 101
Msa0531040 MtrunA17_Chr5g0412671 28.966 290 196 6 20 301 47 334 3.03e-24 100
Msa0531040 MtrunA17_Chr8g0351101 27.636 275 187 7 31 295 75 347 3.05e-24 101
Msa0531040 MtrunA17_Chr6g0455481 27.273 275 190 6 32 299 58 329 3.06e-24 100
Msa0531040 MtrunA17_Chr5g0412681 28.159 277 191 6 29 298 43 318 4.35e-24 100
Msa0531040 MtrunA17_Chr7g0239101 27.950 322 202 11 3 314 52 353 4.67e-24 100
Msa0531040 MtrunA17_Chr7g0239111 27.869 305 202 10 4 300 50 344 8.11e-24 100
Msa0531040 MtrunA17_Chr5g0405411 27.119 295 204 6 13 300 41 331 8.32e-24 99.8
Msa0531040 MtrunA17_Chr1g0204181 27.899 276 182 8 33 295 82 353 8.65e-24 100
Msa0531040 MtrunA17_Chr5g0394071 33.333 171 102 6 125 292 2 163 8.67e-24 95.9
Msa0531040 MtrunA17_Chr1g0179801 25.545 321 199 8 8 306 65 367 9.20e-24 100
Msa0531040 MtrunA17_Chr4g0006371 28.873 284 184 8 32 303 84 361 9.48e-24 99.8
Msa0531040 MtrunA17_Chr1g0191201 25.818 275 189 7 33 295 76 347 1.26e-23 99.8
Msa0531040 MtrunA17_Chr5g0412651 27.586 290 202 4 19 301 46 334 1.47e-23 99.0
Msa0531040 MtrunA17_Chr4g0045411 26.667 300 209 5 3 292 27 325 1.56e-23 99.0
Msa0531040 MtrunA17_Chr4g0064781 27.857 280 186 9 32 301 66 339 2.58e-23 98.2
Msa0531040 MtrunA17_Chr5g0423191 28.986 276 185 7 35 303 68 339 3.11e-23 98.2
Msa0531040 MtrunA17_Chr5g0423251 28.727 275 187 5 35 303 68 339 3.14e-23 98.2
Msa0531040 MtrunA17_Chr5g0421041 28.758 306 206 8 3 303 39 337 3.15e-23 98.2
Msa0531040 MtrunA17_Chr7g0250511 26.861 309 203 8 9 306 49 345 3.55e-23 97.8
Msa0531040 MtrunA17_Chr4g0037611 33.125 160 98 4 135 292 1 153 5.37e-23 94.0
Msa0531040 MtrunA17_Chr5g0420721 32.632 190 125 3 116 303 53 241 5.53e-23 95.9
Msa0531040 MtrunA17_Chr2g0319491 26.207 290 193 7 8 292 32 305 5.91e-23 97.1
Msa0531040 MtrunA17_Chr2g0289341 25.974 308 205 9 9 309 4 295 8.98e-23 96.3
Msa0531040 MtrunA17_Chr5g0420941 28.710 310 207 10 3 306 39 340 1.12e-22 96.7
Msa0531040 MtrunA17_Chr8g0384481 25.357 280 200 4 33 304 81 359 1.27e-22 96.7
Msa0531040 MtrunA17_Chr7g0220011 28.214 280 180 8 32 299 55 325 1.30e-22 96.3
Msa0531040 MtrunA17_Chr8g0370721 28.990 307 203 13 1 298 44 344 1.51e-22 96.3
Msa0531040 MtrunA17_Chr6g0474391 33.333 180 114 3 124 298 187 365 1.73e-22 96.7
Msa0531040 MtrunA17_Chr1g0162361 25.263 285 182 7 31 292 42 318 2.07e-22 95.9
Msa0531040 MtrunA17_Chr3g0109041 29.082 196 133 3 115 305 151 345 2.16e-22 95.9
Msa0531040 MtrunA17_Chr3g0102041 27.178 287 194 7 29 306 57 337 4.03e-22 95.1
Msa0531040 MtrunA17_Chr8g0375671 29.712 313 206 10 3 306 44 351 4.74e-22 95.1
Msa0531040 MtrunA17_Chr5g0424201 26.421 299 193 7 8 293 43 327 5.00e-22 94.7
Msa0531040 MtrunA17_Chr3g0145171 30.319 188 125 5 116 298 158 344 5.36e-22 94.7
Msa0531040 MtrunA17_Chr3g0113641 25.559 313 201 9 9 303 50 348 5.73e-22 94.7
Msa0531040 MtrunA17_Chr4g0045441 27.875 287 179 6 28 293 48 327 9.95e-22 94.0
Msa0531040 MtrunA17_Chr4g0055911 26.537 309 202 9 1 293 1 300 1.28e-21 93.2
Msa0531040 MtrunA17_Chr7g0233661 34.783 138 83 2 155 292 7 137 1.33e-21 89.4
Msa0531040 MtrunA17_Chr1g0162191 29.032 310 206 9 4 306 42 344 1.42e-21 93.6
Msa0531040 MtrunA17_Chr5g0423201 28.391 317 200 12 3 306 41 343 1.77e-21 93.2
Msa0531040 MtrunA17_Chr8g0365241 29.603 277 186 8 36 306 80 353 3.04e-21 92.8
Msa0531040 MtrunA17_Chr7g0239821 28.438 320 204 12 8 314 63 370 3.97e-21 92.4
Msa0531040 MtrunA17_Chr1g0162351 25.773 291 182 7 27 293 92 372 4.51e-21 92.8
Msa0531040 MtrunA17_Chr3g0093761 25.581 301 210 7 9 305 56 346 4.69e-21 92.0
Msa0531040 MtrunA17_Chr2g0332191 25.704 284 198 6 19 293 55 334 6.29e-21 92.0
Msa0531040 MtrunA17_Chr4g0068891 26.621 293 194 7 19 298 23 307 8.42e-21 90.9
Msa0531040 MtrunA17_Chr4g0055871 27.273 308 196 10 1 293 1 295 9.19e-21 90.5
Msa0531040 MtrunA17_Chr5g0420981 26.837 313 212 9 2 306 46 349 1.16e-20 90.9
Msa0531040 MtrunA17_Chr1g0162321 25.430 291 183 7 27 293 92 372 1.35e-20 91.3
Msa0531040 MtrunA17_Chr4g0045471 30.168 179 122 2 118 293 150 328 1.56e-20 90.5
Msa0531040 MtrunA17_Chr5g0421011 28.065 310 207 10 1 303 39 339 1.75e-20 90.5
Msa0531040 MtrunA17_Chr8g0375601 27.707 314 208 9 3 306 42 346 1.88e-20 90.5
Msa0531040 MtrunA17_Chr1g0184101 25.000 300 209 5 9 301 38 328 2.28e-20 90.1
Msa0531040 MtrunA17_Chr4g0045431 27.055 292 175 8 28 293 48 327 3.18e-20 89.7
Msa0531040 MtrunA17_Chr3g0093741 24.104 307 208 6 9 305 56 347 3.41e-20 89.7
Msa0531040 MtrunA17_Chr5g0420951 28.986 276 183 8 36 303 76 346 4.36e-20 89.4
Msa0531040 MtrunA17_Chr7g0239121 25.974 308 211 10 4 303 46 344 4.67e-20 89.4
Msa0531040 MtrunA17_Chr5g0437181 26.950 282 191 6 32 303 71 347 7.17e-20 89.0
Msa0531040 MtrunA17_Chr7g0265351 25.763 295 195 6 25 305 46 330 7.45e-20 88.6
Msa0531040 MtrunA17_Chr8g0375681 29.137 278 180 9 35 306 13 279 8.12e-20 87.8
Msa0531040 MtrunA17_Chr3g0093751 24.573 293 201 5 25 305 63 347 8.15e-20 88.6
Msa0531040 MtrunA17_Chr5g0423221 27.508 309 209 8 2 303 64 364 1.05e-19 88.6
Msa0531040 MtrunA17_Chr3g0092531 27.004 237 162 5 33 265 30 259 1.21e-19 87.4
Msa0531040 MtrunA17_Chr3g0145181 29.050 179 122 4 116 290 158 335 1.73e-19 87.8
Msa0531040 MtrunA17_Chr5g0420901 27.217 327 201 11 3 314 40 344 2.14e-19 87.4
Msa0531040 MtrunA17_Chr8g0375701 27.869 305 203 8 3 299 47 342 2.68e-19 87.0
Msa0531040 MtrunA17_Chr5g0426891 27.000 300 209 8 6 300 36 330 3.19e-19 86.7
Msa0531040 MtrunA17_Chr8g0389941 25.705 319 202 11 1 293 23 332 5.56e-19 86.3
Msa0531040 MtrunA17_Chr4g0045451 30.899 178 121 2 118 293 150 327 5.78e-19 86.3
Msa0531040 MtrunA17_Chr5g0439011 27.303 304 187 12 9 296 5 290 1.35e-18 84.7
Msa0531040 MtrunA17_Chr7g0220001 26.165 279 185 7 33 299 58 327 1.40e-18 84.7
Msa0531040 MtrunA17_Chr2g0314381 26.667 285 200 7 27 306 94 374 2.15e-18 84.7
Msa0531040 MtrunA17_Chr8g0375571 26.045 311 218 9 3 306 39 344 3.08e-18 84.0
Msa0531040 MtrunA17_Chr5g0424211 24.727 275 191 6 19 281 45 315 3.33e-18 84.0
Msa0531040 MtrunA17_Chr5g0420881 35.659 129 81 2 179 306 11 138 3.36e-18 80.1
Msa0531040 MtrunA17_Chr3g0121141 25.510 294 201 8 9 296 4 285 3.59e-18 83.6
Msa0531040 MtrunA17_Chr3g0145201 29.050 179 122 4 116 290 793 970 3.65e-18 85.1
Msa0531040 MtrunA17_Chr2g0314401 26.335 281 200 6 31 306 70 348 4.95e-18 83.6
Msa0531040 MtrunA17_Chr5g0423211 26.332 319 205 11 3 306 41 344 6.95e-18 83.2
Msa0531040 MtrunA17_Chr3g0125421 24.658 292 199 9 33 307 59 346 7.77e-18 83.2
Msa0531040 MtrunA17_Chr2g0293931 28.141 199 132 3 125 312 7 205 7.85e-18 80.5
Msa0531040 MtrunA17_Chr7g0239071 26.644 289 192 9 37 314 19 298 9.93e-18 82.0
Msa0531040 MtrunA17_Chr6g0486831 25.000 312 194 9 14 293 18 321 1.98e-17 81.6
Msa0531040 MtrunA17_Chr3g0125201 23.841 302 210 7 9 300 3 294 2.15e-17 81.3
Msa0531040 MtrunA17_Chr7g0266651 26.582 316 205 11 3 305 53 354 2.94e-17 81.3
Msa0531040 MtrunA17_Chr3g0126761 31.902 163 103 4 137 293 53 213 4.02e-17 79.0
Msa0531040 MtrunA17_Chr4g0045461 32.278 158 105 2 137 292 168 325 4.32e-17 80.9
Msa0531040 MtrunA17_Chr5g0421101 30.526 190 129 3 116 303 151 339 4.53e-17 80.9
Msa0531040 MtrunA17_Chr6g0463821 38.938 113 60 3 124 235 40 144 5.13e-17 77.4
Msa0531040 MtrunA17_Chr3g0105281 27.437 277 158 10 35 292 49 301 5.75e-17 80.1
Msa0531040 MtrunA17_Chr6g0488511 26.911 327 174 14 9 306 3 293 1.18e-16 79.0
Msa0531040 MtrunA17_Chr4g0050031 28.421 190 131 4 118 303 169 357 1.30e-16 79.7
Msa0531040 MtrunA17_Chr2g0311681 29.787 188 122 6 125 304 176 361 1.36e-16 79.3
Msa0531040 MtrunA17_Chr3g0092581 32.540 126 83 2 141 265 7 131 1.64e-16 76.3
Msa0531040 MtrunA17_Chr1g0194321 26.829 287 174 9 33 292 36 313 2.03e-16 79.0
Msa0531040 MtrunA17_Chr2g0311691 28.191 188 125 5 125 304 176 361 2.20e-16 79.0
Msa0531040 MtrunA17_Chr5g0421091 25.243 309 220 6 3 306 39 341 2.66e-16 78.6
Msa0531040 MtrunA17_Chr3g0126741 26.073 303 203 9 1 293 51 342 3.21e-16 78.6
Msa0531040 MtrunA17_Chr2g0285931 22.569 288 202 8 29 299 38 321 9.08e-16 76.6
Msa0531040 MtrunA17_Chr8g0364471 25.552 317 207 13 5 305 63 366 9.48e-16 77.0
Msa0531040 MtrunA17_Chr2g0314391 24.911 281 204 6 31 306 89 367 9.69e-16 77.0
Msa0531040 MtrunA17_Chr2g0311741 27.322 183 122 5 124 304 146 319 1.41e-15 76.3
Msa0531040 MtrunA17_Chr2g0311631 24.643 280 175 9 4 263 49 312 1.53e-15 76.3
Msa0531040 MtrunA17_Chr3g0114861 23.443 273 199 6 28 292 51 321 1.89e-15 75.9
Msa0531040 MtrunA17_Chr5g0398291 24.667 300 211 8 7 295 45 340 2.71e-15 75.5
Msa0531040 MtrunA17_Chr4g0075471 29.299 157 107 3 143 296 3 158 3.68e-15 72.0
Msa0531040 MtrunA17_Chr3g0087031 25.000 304 214 10 3 300 54 349 4.72e-15 75.1
Msa0531040 MtrunA17_Chr1g0187811 24.667 300 172 12 29 299 206 480 5.62e-15 75.1
Msa0531040 MtrunA17_Chr4g0052251 24.555 281 189 7 29 292 39 313 5.92e-15 74.3
Msa0531040 MtrunA17_Chr1g0161041 27.619 315 211 11 3 307 83 390 6.79e-15 74.7
Msa0531040 MtrunA17_Chr4g0064771 28.218 202 136 7 106 301 6 204 7.26e-15 72.4
Msa0531040 MtrunA17_Chr8g0336861 21.118 322 234 9 1 311 52 364 9.53e-15 73.9
Msa0531040 MtrunA17_Chr7g0235951 22.150 307 214 10 8 299 64 360 1.31e-14 73.6
Msa0531040 MtrunA17_Chr2g0311701 25.926 189 128 5 125 304 182 367 1.44e-14 73.6
Msa0531040 MtrunA17_Chr8g0358941 33.628 113 75 0 182 294 203 315 1.63e-14 73.2
Msa0531040 MtrunA17_Chr7g0239091 25.256 293 195 9 9 295 160 434 3.17e-14 72.8
Msa0531040 MtrunA17_Chr2g0311761 20.984 305 214 8 9 299 68 359 3.39e-14 72.4
Msa0531040 MtrunA17_Chr2g0311861 24.862 181 127 6 131 304 163 341 4.35e-14 72.0
Msa0531040 MtrunA17_Chr4g0053251 25.287 261 174 6 21 264 26 282 6.46e-14 71.2
Msa0531040 MtrunA17_Chr2g0313111 24.199 281 183 9 29 292 38 305 1.10e-13 70.5
Msa0531040 MtrunA17_Chr1g0158011 28.571 175 121 4 124 294 69 243 1.28e-13 69.7
Msa0531040 MtrunA17_Chr6g0472861 23.188 276 199 7 33 299 89 360 1.93e-13 70.1
Msa0531040 MtrunA17_Chr5g0407591 41.463 82 46 2 212 292 6 86 2.45e-13 65.5
Msa0531040 MtrunA17_Chr8g0336851 20.124 323 232 10 2 311 53 362 4.61e-13 68.9
Msa0531040 MtrunA17_Chr2g0311711 28.492 179 122 5 122 295 177 354 1.24e-12 67.8
Msa0531040 MtrunA17_Chr8g0336761 20.984 305 221 9 18 311 67 362 1.56e-12 67.4
Msa0531040 MtrunA17_Chr1g0161081 32.812 128 82 4 175 300 235 360 1.85e-12 67.4
Msa0531040 MtrunA17_Chr1g0161111 33.594 128 81 4 175 300 294 419 2.30e-12 67.4
Msa0531040 MtrunA17_Chr1g0184241 23.626 182 135 3 126 305 181 360 4.28e-12 66.2
Msa0531040 MtrunA17_Chr1g0187821 28.324 173 119 5 131 299 186 357 7.32e-12 65.5
Msa0531040 MtrunA17_Chr7g0236011 22.785 316 211 10 2 299 60 360 8.98e-12 65.1
Msa0531040 MtrunA17_Chr8g0336751 23.121 173 128 4 131 299 213 384 1.04e-11 65.1
Msa0531040 MtrunA17_Chr8g0336801 27.068 133 92 4 182 311 24 154 5.98e-11 60.1
Msa0531040 MtrunA17_Chr7g0235981 39.241 79 47 1 182 260 192 269 9.43e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0531040 AT1G52820.1 60.568 317 122 1 1 314 1 317 2.77e-147 417
Msa0531040 AT4G03070.1 52.077 313 139 3 8 313 13 321 2.23e-116 338
Msa0531040 AT1G52820.2 60.169 236 91 1 1 233 1 236 1.33e-102 301
Msa0531040 AT1G52790.1 43.871 310 170 3 6 313 2 309 2.12e-95 285
Msa0531040 AT1G28030.1 46.562 320 159 7 3 314 7 322 1.13e-93 281
Msa0531040 AT1G52800.1 42.581 310 175 2 6 314 7 314 4.08e-91 274
Msa0531040 AT1G52810.1 44.231 312 136 7 8 314 11 289 3.35e-81 248
Msa0531040 AT1G80320.1 36.025 322 194 5 1 314 1 318 8.42e-68 214
Msa0531040 AT1G15540.1 35.385 325 193 6 1 314 1 319 3.51e-64 205
Msa0531040 AT1G15540.4 35.385 325 193 6 1 314 1 319 3.51e-64 205
Msa0531040 AT1G15540.3 35.385 325 193 6 1 314 8 326 3.89e-64 206
Msa0531040 AT1G15540.2 35.385 325 193 6 1 314 4 322 4.50e-64 205
Msa0531040 AT4G03050.2 44.444 189 101 2 1 189 1 185 1.54e-48 167
Msa0531040 AT4G03050.2 47.445 137 71 1 179 314 271 407 7.30e-42 150
Msa0531040 AT4G03050.1 44.444 189 101 2 1 189 1 185 1.54e-48 167
Msa0531040 AT4G03050.1 47.445 137 71 1 179 314 271 407 7.30e-42 150
Msa0531040 AT4G23340.1 30.479 292 188 7 19 300 13 299 3.89e-33 124
Msa0531040 AT2G36690.2 28.254 315 193 8 8 306 60 357 8.74e-28 111
Msa0531040 AT2G36690.1 28.254 315 193 8 8 306 60 357 8.74e-28 111
Msa0531040 AT3G51240.1 27.273 308 207 9 8 306 37 336 1.06e-25 105
Msa0531040 AT4G21690.1 26.740 273 184 6 35 293 63 333 2.00e-25 104
Msa0531040 AT4G23340.2 34.066 182 110 4 128 300 1 181 5.19e-25 100
Msa0531040 AT1G15550.1 26.937 271 191 2 31 294 69 339 5.44e-25 103
Msa0531040 AT5G24530.1 27.425 299 187 7 19 299 41 327 1.37e-24 102
Msa0531040 AT5G51310.1 27.632 304 191 9 19 300 8 304 1.51e-24 101
Msa0531040 AT5G51810.1 25.912 274 190 6 33 295 81 352 4.43e-24 101
Msa0531040 AT4G25420.1 26.537 309 210 9 9 304 61 365 6.14e-24 100
Msa0531040 AT1G50960.1 29.615 260 172 6 8 263 39 291 1.84e-23 99.0
Msa0531040 AT1G80330.1 27.778 288 192 8 19 294 52 335 2.61e-23 99.0
Msa0531040 AT4G21200.1 29.630 270 172 9 8 271 41 298 3.78e-23 98.2
Msa0531040 AT5G05600.1 28.421 285 193 8 27 303 79 360 4.26e-23 98.6
Msa0531040 AT3G55970.1 25.743 303 190 7 15 299 63 348 4.69e-23 98.2
Msa0531040 AT1G78550.1 26.374 273 194 6 36 303 77 347 5.53e-23 97.8
Msa0531040 AT3G21420.1 32.474 194 126 4 116 305 163 355 1.07e-22 97.4
Msa0531040 AT1G14120.2 29.670 273 182 5 19 287 11 277 2.02e-22 95.5
Msa0531040 AT1G14120.1 29.670 273 182 5 19 287 11 277 2.02e-22 95.5
Msa0531040 AT1G14120.3 29.670 273 182 5 19 287 11 277 2.02e-22 95.5
Msa0531040 AT1G78550.2 27.935 247 171 6 62 303 25 269 2.02e-22 95.1
Msa0531040 AT1G14130.1 26.740 273 194 4 19 289 12 280 2.26e-22 95.5
Msa0531040 AT3G51240.2 29.528 254 160 8 64 306 7 252 4.16e-22 94.0
Msa0531040 AT5G07200.1 31.977 172 115 2 107 277 165 335 4.19e-22 95.9
Msa0531040 AT4G16330.1 27.895 190 131 3 117 305 67 251 2.76e-21 91.7
Msa0531040 AT2G44800.1 28.205 312 205 9 3 306 48 348 3.79e-21 92.8
Msa0531040 AT3G11180.2 27.184 309 207 9 17 314 98 399 7.82e-21 92.4
Msa0531040 AT3G11180.1 27.852 298 198 8 17 303 98 389 8.84e-21 92.4
Msa0531040 AT3G13610.1 26.752 314 204 9 3 305 56 354 1.52e-20 91.3
Msa0531040 AT3G19010.1 25.862 290 178 8 29 292 45 323 1.64e-20 90.9
Msa0531040 AT3G19010.4 25.862 290 178 8 29 292 45 323 1.64e-20 90.9
Msa0531040 AT5G63600.2 23.792 269 192 5 32 293 49 311 2.97e-20 89.7
Msa0531040 AT4G16330.2 27.895 190 131 3 117 305 173 357 3.04e-20 90.5
Msa0531040 AT1G60980.1 29.412 204 137 4 104 304 163 362 3.67e-20 90.1
Msa0531040 AT5G63600.1 23.507 268 193 4 32 293 49 310 7.14e-20 89.0
Msa0531040 AT4G25310.1 28.777 278 185 8 36 306 76 347 1.49e-19 88.2
Msa0531040 AT4G10490.1 30.435 184 122 4 117 296 148 329 1.61e-19 88.2
Msa0531040 AT2G38240.1 28.819 288 177 10 33 303 66 342 2.06e-19 87.8
Msa0531040 AT1G30040.1 25.455 275 191 5 29 292 41 312 2.78e-19 87.4
Msa0531040 AT5G08640.2 22.973 296 209 7 6 292 40 325 4.51e-19 86.7
Msa0531040 AT5G08640.1 22.973 296 209 7 6 292 40 325 4.51e-19 86.7
Msa0531040 AT1G80340.1 26.333 300 202 5 2 293 43 331 1.50e-18 85.5
Msa0531040 AT4G25300.1 25.817 306 214 8 8 306 51 350 2.31e-18 84.7
Msa0531040 AT5G54000.1 30.319 188 125 4 116 298 73 259 2.53e-18 83.6
Msa0531040 AT3G60290.1 26.712 292 190 7 28 306 68 348 4.04e-18 84.3
Msa0531040 AT1G55290.1 24.830 294 207 6 18 305 69 354 4.18e-18 84.3
Msa0531040 AT1G06620.1 25.806 279 187 8 32 299 83 352 5.60e-18 84.0
Msa0531040 AT5G54000.2 30.319 188 125 4 116 298 153 339 7.14e-18 83.6
Msa0531040 AT5G43935.1 22.789 294 195 8 6 293 16 283 7.28e-18 82.8
Msa0531040 AT3G19000.1 24.390 287 188 6 29 293 50 329 9.06e-18 83.2
Msa0531040 AT5G20550.1 27.368 285 177 11 31 297 65 337 1.02e-17 82.8
Msa0531040 AT5G20400.1 25.249 301 207 9 9 298 45 338 2.23e-17 82.0
Msa0531040 AT5G63590.1 26.370 292 186 11 19 292 17 297 2.32e-17 81.3
Msa0531040 AT4G22880.1 24.342 304 213 8 4 295 42 340 2.60e-17 82.0
Msa0531040 AT4G22880.2 24.342 304 213 8 4 295 42 340 2.60e-17 82.0
Msa0531040 AT4G22880.3 24.342 304 213 8 4 295 42 340 2.60e-17 82.0
Msa0531040 AT4G10500.1 23.667 300 210 6 9 299 44 333 2.63e-17 81.6
Msa0531040 AT2G34555.1 25.352 284 198 6 29 301 37 317 5.64e-17 80.5
Msa0531040 AT5G43440.1 27.684 177 119 5 126 296 176 349 2.46e-16 79.0
Msa0531040 AT1G77330.1 26.198 313 192 11 9 302 3 295 3.46e-16 78.2
Msa0531040 AT5G63595.1 23.387 248 168 5 19 263 28 256 4.33e-16 77.4
Msa0531040 AT4G25300.2 29.444 180 123 3 124 300 72 250 5.87e-16 76.6
Msa0531040 AT1G12010.1 24.497 298 208 7 4 296 2 287 1.08e-15 76.6
Msa0531040 AT1G78440.1 27.119 295 177 11 30 299 29 310 2.10e-15 76.3
Msa0531040 AT3G19010.3 23.509 285 161 8 29 292 45 293 2.47e-15 75.9
Msa0531040 AT5G59530.1 23.779 307 207 10 8 299 57 351 3.02e-15 75.9
Msa0531040 AT1G05010.1 24.000 275 191 9 9 276 4 267 3.75e-15 75.1
Msa0531040 AT1G47990.1 26.214 206 136 3 123 312 114 319 4.60e-15 75.1
Msa0531040 AT1G62380.1 25.484 310 190 13 4 296 2 287 5.11e-15 74.7
Msa0531040 AT3G61400.1 29.282 181 122 4 126 300 179 359 5.20e-15 75.1
Msa0531040 AT1G17010.1 26.481 287 200 7 29 306 68 352 5.58e-15 75.1
Msa0531040 AT5G07480.2 27.136 199 136 5 116 306 42 239 6.07e-15 73.6
Msa0531040 AT1G03410.1 28.729 181 119 6 126 299 209 386 6.35e-15 75.1
Msa0531040 AT1G03410.2 28.729 181 119 6 126 299 172 349 7.13e-15 74.7
Msa0531040 AT5G59540.1 24.262 305 201 12 8 296 60 350 1.00e-14 74.3
Msa0531040 AT5G07480.1 27.136 199 136 5 116 306 151 348 1.24e-14 73.9
Msa0531040 AT1G44090.1 28.889 180 117 4 122 298 189 360 1.28e-14 74.3
Msa0531040 AT5G43450.1 23.432 303 192 9 9 292 61 342 1.32e-14 73.9
Msa0531040 AT2G30830.1 25.442 283 189 10 29 299 73 345 1.78e-14 73.6
Msa0531040 AT1G49390.2 28.042 189 132 3 116 301 73 260 4.82e-14 71.2
Msa0531040 AT3G55970.2 24.895 237 143 7 15 233 63 282 6.52e-14 71.6
Msa0531040 AT1G35190.1 25.651 269 158 10 35 271 31 289 7.14e-14 71.6
Msa0531040 AT5G51810.2 25.581 215 147 6 33 236 81 293 8.69e-14 70.9
Msa0531040 AT4G16765.6 28.042 189 124 8 117 294 50 237 9.03e-14 70.5
Msa0531040 AT4G16765.1 28.042 189 124 8 117 294 50 237 9.03e-14 70.5
Msa0531040 AT4G16765.2 28.042 189 124 8 117 294 50 237 9.03e-14 70.5
Msa0531040 AT1G02400.1 24.211 285 189 7 32 298 40 315 1.08e-13 71.2
Msa0531040 AT1G17020.1 26.007 273 189 10 36 299 77 345 1.43e-13 70.9
Msa0531040 AT1G49390.1 28.042 189 132 3 116 301 152 339 1.47e-13 70.9
Msa0531040 AT1G04380.1 27.059 170 119 4 131 296 161 329 1.59e-13 70.9
Msa0531040 AT5G05600.2 28.837 215 142 8 27 233 79 290 2.35e-13 69.7
Msa0531040 AT2G25450.1 25.316 237 171 5 27 260 71 304 6.05e-13 68.9
Msa0531040 AT3G46490.1 24.911 281 167 12 25 271 24 294 1.10e-12 68.2
Msa0531040 AT5G43440.2 30.631 111 75 2 126 235 176 285 2.74e-12 66.6
Msa0531040 AT5G58660.1 24.000 300 192 10 4 271 18 313 3.09e-12 67.0
Msa0531040 AT1G04350.1 27.273 176 118 7 131 299 175 347 5.14e-12 66.2
Msa0531040 AT4G16765.5 34.483 116 71 3 183 294 77 191 5.40e-12 64.3
Msa0531040 AT1G06620.2 26.214 206 143 5 32 233 83 283 7.73e-12 65.1
Msa0531040 AT1G06650.2 25.843 178 118 6 131 299 184 356 1.57e-11 65.1
Msa0531040 AT3G12900.1 23.986 296 208 8 18 305 63 349 1.80e-11 64.7
Msa0531040 AT4G25310.2 28.148 270 157 10 36 300 76 313 2.30e-11 64.3
Msa0531040 AT3G49620.1 22.593 270 188 7 29 281 60 325 5.29e-11 63.2
Msa0531040 AT3G46490.2 24.031 258 154 11 35 260 36 283 6.84e-11 62.8

Find 111 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAACCTTCCACTTGATTT+TGG 0.165013 4_1:-5167954 None:intergenic
AATTATTAGGAAGATGATTT+TGG 0.182671 4_1:+5167783 Msa0531040:CDS
CATAACCCTGAGACGGTAAT+TGG 0.234620 4_1:-5167851 None:intergenic
GCTTATCCATTGTTCATCTT+TGG 0.262260 4_1:-5167986 None:intergenic
TTGAGTTGGATCAAATTATT+AGG 0.271655 4_1:+5167770 Msa0531040:CDS
TAACTCCCAATTGGGACTTT+TGG 0.274880 4_1:-5167070 None:intergenic
TCCATCCGGCCACAAGATAT+TGG 0.294565 4_1:-5167346 None:intergenic
GGGAAGGACAGGTGAAAATA+TGG 0.295469 4_1:+5166990 Msa0531040:exon
GCATTGACCTTAATCAAAAT+AGG 0.296375 4_1:+5166962 Msa0531040:five_prime_UTR
AAGCCTTATGATGGCTATAT+TGG 0.334407 4_1:+5167246 Msa0531040:CDS
CCTTAATCAAAATAGGGAAT+AGG 0.359403 4_1:+5166969 Msa0531040:five_prime_UTR
AAGACAATTAGTGGAAGCTT+TGG 0.371289 4_1:-5167027 None:intergenic
CTCATCATCACCCGGTGAAA+TGG 0.378285 4_1:-5168294 None:intergenic
GGACTTCACTAACTCCCAAT+TGG 0.386844 4_1:-5167079 None:intergenic
CTTAATCAAAATAGGGAATA+GGG 0.394693 4_1:+5166970 Msa0531040:five_prime_UTR
TAAATGTTGTTTGCATTCAT+TGG 0.395916 4_1:+5168756 Msa0531040:three_prime_UTR
TTTATAATGTACCCTCCATT+GGG 0.397954 4_1:-5168357 None:intergenic
TACAAGGCATTAGTAGAGTA+TGG 0.398278 4_1:+5167108 Msa0531040:CDS
GGCTGCATTCGCCATTTCAC+CGG 0.398369 4_1:+5168283 Msa0531040:CDS
CATTGACCTTAATCAAAATA+GGG 0.404620 4_1:+5166963 Msa0531040:five_prime_UTR
CTATAGCTTATGTTATTAAG+AGG 0.409102 4_1:+5168659 Msa0531040:three_prime_UTR
TTTAATATTATCAATTATCA+AGG 0.419094 4_1:+5166870 Msa0531040:five_prime_UTR
TTAAGTAGCTTAGTCTCTAA+AGG 0.419629 4_1:-5167213 None:intergenic
CTACTAATGCCTTGTAGACT+TGG 0.421084 4_1:-5167101 None:intergenic
CTCTGAGGAGCTAATTGAGT+TGG 0.423418 4_1:+5167756 Msa0531040:CDS
CAAAAGGCTTAAAGAGTAAA+GGG 0.424456 4_1:-5168410 None:intergenic
CTCCTCAGAGAAAGAATGTA+TGG 0.425083 4_1:-5167743 None:intergenic
ACTCAACCAATTACCGTCTC+AGG 0.434283 4_1:+5167845 Msa0531040:CDS
AGGTTATTGAAGACAATTAG+TGG 0.438262 4_1:-5167036 None:intergenic
TGGATGCCAAAAGTCCCAAT+TGG 0.438994 4_1:+5167064 Msa0531040:CDS
TCCCGTGGAGCTGGTGGATG+AGG 0.442692 4_1:+5168383 Msa0531040:CDS
TCAAAAGGCTTAAAGAGTAA+AGG 0.456074 4_1:-5168411 None:intergenic
ACTACAAAACTTTCTGAAGA+AGG 0.456597 4_1:-5168015 None:intergenic
CTCCTCATCCACCAGCTCCA+CGG 0.458278 4_1:-5168385 None:intergenic
TCCTCATCCACCAGCTCCAC+GGG 0.464984 4_1:-5168384 None:intergenic
CTCTCATAAAGTGGAACCAC+TGG 0.475451 4_1:-5167276 None:intergenic
TATAAAAGCTCCCGTGGAGC+TGG 0.481011 4_1:+5168374 Msa0531040:CDS
GACTTCACTAACTCCCAATT+GGG 0.486736 4_1:-5167078 None:intergenic
TAAGTAGCTTAGTCTCTAAA+GGG 0.493999 4_1:-5167212 None:intergenic
ACCAATATCTTGTGGCCGGA+TGG 0.495704 4_1:+5167345 Msa0531040:CDS
AGGAACTCAGCATAATCAAA+AGG 0.497152 4_1:-5168426 None:intergenic
ATAGCTCAAACCCATCCCTT+TGG 0.499909 4_1:-5168640 None:intergenic
GTCAATGCTTAGTTTAAGCT+AGG 0.507437 4_1:-5166947 None:intergenic
GTGTCTAATAAGCCTTATGA+TGG 0.509211 4_1:+5167237 Msa0531040:CDS
ATGTCTTTACGAAGGTCTAA+AGG 0.510202 4_1:-5167159 None:intergenic
CTACTCTCATGAAGGCCAAA+GGG 0.512486 4_1:+5168625 Msa0531040:three_prime_UTR
TGTCTTCAATAACCTCAACT+TGG 0.513211 4_1:+5167044 Msa0531040:CDS
TTTGCTATCCGCACTTATTG+TGG 0.514546 4_1:+5168486 Msa0531040:CDS
TGACCAATATAGCCATCATA+AGG 0.516797 4_1:-5167249 None:intergenic
TAAGATATTTGCATCCTCAA+TGG 0.520151 4_1:-5167304 None:intergenic
GGATGCCAAAAGTCCCAATT+GGG 0.520983 4_1:+5167065 Msa0531040:CDS
TTTAGGTGTTGAAAAGTACA+TGG 0.523921 4_1:+5167810 Msa0531040:CDS
AATAGGGAATAGGGAAGGAC+AGG 0.526793 4_1:+5166979 Msa0531040:five_prime_UTR
GCTGCATTCGCCATTTCACC+GGG 0.528558 4_1:+5168284 Msa0531040:CDS
ATGGCCATGCTCTCATAAAG+TGG 0.532560 4_1:-5167285 None:intergenic
AATGAGGCAAGGTATTCAGC+AGG 0.534999 4_1:+5168321 Msa0531040:CDS
AAAAGCTCCCGTGGAGCTGG+TGG 0.535296 4_1:+5168377 Msa0531040:CDS
TATCACTCTCGAGAAGGCAT+GGG 0.536634 4_1:+5168456 Msa0531040:CDS
CTCATGAAGGCCAAAGGGAT+GGG 0.539788 4_1:+5168630 Msa0531040:three_prime_UTR
TCTCATGAAGGCCAAAGGGA+TGG 0.541383 4_1:+5168629 Msa0531040:three_prime_UTR
TTATCACTCTCGAGAAGGCA+TGG 0.542864 4_1:+5168455 Msa0531040:CDS
CAAACAAGTGACACAAAACT+AGG 0.550916 4_1:+5167889 Msa0531040:CDS
GGAAGGACAGGTGAAAATAT+GGG 0.551890 4_1:+5166991 Msa0531040:exon
TTGTACCAAAATCAAGTGGA+AGG 0.554694 4_1:+5167949 Msa0531040:CDS
CATGACCAATATCTTGTGGC+CGG 0.564885 4_1:+5167341 Msa0531040:CDS
ATTACATCGGTGTTACGTCT+AGG 0.565772 4_1:+5168538 Msa0531040:three_prime_UTR
AGTGAAGTCCCAAGTCTACA+AGG 0.568762 4_1:+5167092 Msa0531040:CDS
TACTAATGCCTTGTAGACTT+GGG 0.570489 4_1:-5167100 None:intergenic
TATAGCTTATGTTATTAAGA+GGG 0.570560 4_1:+5168660 Msa0531040:three_prime_UTR
TTATGAGAGCATGGCCATTG+AGG 0.570943 4_1:+5167290 Msa0531040:CDS
GGTTCCACTTTATGAGAGCA+TGG 0.579350 4_1:+5167281 Msa0531040:CDS
CATATTGTACCAAAATCAAG+TGG 0.585592 4_1:+5167945 Msa0531040:CDS
AAGTATTACTACTCTCATGA+AGG 0.588140 4_1:+5168617 Msa0531040:three_prime_UTR
TTTCACCGGGTGATGATGAG+TGG 0.590400 4_1:+5168297 Msa0531040:CDS
CATTCCCACTCATCATCACC+CGG 0.593548 4_1:-5168302 None:intergenic
ACAAAGTTCTTGTCAGTGTG+TGG 0.594909 4_1:-5167919 None:intergenic
CTCGAGAGTGATAATACTTG+AGG 0.595697 4_1:-5168446 None:intergenic
ATCACTCTCGAGAAGGCATG+GGG 0.600428 4_1:+5168457 Msa0531040:CDS
TGCAGGCATGGTCAAACGGG+AGG 0.605635 4_1:+5168262 Msa0531040:intron
TGATGACCAAAGATGAACAA+TGG 0.605988 4_1:+5167980 Msa0531040:CDS
ACTACTCTCATGAAGGCCAA+AGG 0.608150 4_1:+5168624 Msa0531040:three_prime_UTR
TTCACCGGGTGATGATGAGT+GGG 0.609819 4_1:+5168298 Msa0531040:CDS
CAACACAATACTTCTTACAA+AGG 0.611240 4_1:-5168785 None:intergenic
AAGTATTATCACTCTCGAGA+AGG 0.611653 4_1:+5168450 Msa0531040:CDS
TTGTTCTCTAACCCCAATGG+AGG 0.612012 4_1:+5168345 Msa0531040:CDS
CTCAACCAATTACCGTCTCA+GGG 0.615222 4_1:+5167846 Msa0531040:CDS
GGTGATGATGAGTGGGAATG+AGG 0.615235 4_1:+5168305 Msa0531040:CDS
GGGTTGTTCTCTAACCCCAA+TGG 0.618714 4_1:+5168342 Msa0531040:CDS
TGTACTTCATAACCCTGAGA+CGG 0.619668 4_1:-5167858 None:intergenic
TCTTGTCAGTGTGTGGACTG+AGG 0.624048 4_1:-5167912 None:intergenic
TGTAATTTGAGCAGTAAGTG+TGG 0.624704 4_1:-5168521 None:intergenic
AACCATACATTCTTTCTCTG+AGG 0.626356 4_1:+5167741 Msa0531040:CDS
GTAAATTGTCTAGAGAACAC+TGG 0.627256 4_1:-5168711 None:intergenic
CATGAGAGTAGTAATACTTG+AGG 0.629628 4_1:-5168613 None:intergenic
AAAGCATGACCAATATCTTG+TGG 0.630527 4_1:+5167337 Msa0531040:CDS
ATCAAAATAGGGAATAGGGA+AGG 0.636356 4_1:+5166974 Msa0531040:five_prime_UTR
CTCAGGGTTATGAAGTACAA+AGG 0.637097 4_1:+5167862 Msa0531040:CDS
AAGCAAATATGTCTTTACGA+AGG 0.638765 4_1:-5167167 None:intergenic
GTACATTATAAAAGCTCCCG+TGG 0.641395 4_1:+5168368 Msa0531040:CDS
AATTAGTGGAAGCTTTGGAG+TGG 0.646700 4_1:-5167022 None:intergenic
TTATAATGTACCCTCCATTG+GGG 0.646898 4_1:-5168356 None:intergenic
TATTATATAACTCAATCGCA+AGG 0.647638 4_1:+5166918 Msa0531040:five_prime_UTR
CTCAAACACCACAATAAGTG+CGG 0.648865 4_1:-5168494 None:intergenic
TGATGAGTGGGAATGAGGCA+AGG 0.659052 4_1:+5168310 Msa0531040:CDS
TGTTCTCTAACCCCAATGGA+GGG 0.668675 4_1:+5168346 Msa0531040:CDS
CTATATTGGTCAATATCCAG+TGG 0.672212 4_1:+5167260 Msa0531040:CDS
GTAGCTTAGTCTCTAAAGGG+AGG 0.679630 4_1:-5167209 None:intergenic
ATGAGGCAAGGTATTCAGCA+GGG 0.682721 4_1:+5168322 Msa0531040:CDS
ACTTACTGCTCAAATTACAT+CGG 0.686134 4_1:+5168525 Msa0531040:three_prime_UTR
AGGTGTTGAAAAGTACATGG+AGG 0.723372 4_1:+5167813 Msa0531040:CDS
TCACTCTCGAGAAGGCATGG+GGG 0.750694 4_1:+5168458 Msa0531040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATATTATCAATTATCA+AGG + chr4_1:5166870-5166889 Msa0531040:five_prime_UTR 10.0%
!!! TTTAAAATATTAACAACTTT+AGG - chr4_1:5167429-5167448 None:intergenic 10.0%
!! AAAGAAAATCAAATTAATAA+GGG - chr4_1:5167713-5167732 None:intergenic 10.0%
!! AAAAGAAAATCAAATTAATA+AGG - chr4_1:5167714-5167733 None:intergenic 10.0%
!! TTTAATATTATCAATTATCA+AGG + chr4_1:5166870-5166889 Msa0531040:five_prime_UTR 10.0%
!!! TTTAAAATATTAACAACTTT+AGG - chr4_1:5167429-5167448 None:intergenic 10.0%
!! AAAGAAAATCAAATTAATAA+GGG - chr4_1:5167713-5167732 None:intergenic 10.0%
!! AAAAGAAAATCAAATTAATA+AGG - chr4_1:5167714-5167733 None:intergenic 10.0%
!! ATTTATAAATAACCATCAAT+TGG + chr4_1:5168083-5168102 Msa0531040:intron 15.0%
!! CATAATAATAAATTTCAACA+TGG - chr4_1:5168196-5168215 None:intergenic 15.0%
!! CATGTTGAAATTTATTATTA+TGG + chr4_1:5168194-5168213 Msa0531040:intron 15.0%
!! ATTTATAAATAACCATCAAT+TGG + chr4_1:5168083-5168102 Msa0531040:intron 15.0%
!! CATAATAATAAATTTCAACA+TGG - chr4_1:5168196-5168215 None:intergenic 15.0%
!! CATGTTGAAATTTATTATTA+TGG + chr4_1:5168194-5168213 Msa0531040:intron 15.0%
!! TTATTAACAAGTTTCATCAT+TGG + chr4_1:5167528-5167547 Msa0531040:intron 20.0%
!! TATCCTATTTATCTTATCAT+TGG + chr4_1:5167665-5167684 Msa0531040:intron 20.0%
!!! AATTATTAGGAAGATGATTT+TGG + chr4_1:5167783-5167802 Msa0531040:CDS 20.0%
!!! TTGATGGTTATTTATAAATG+AGG - chr4_1:5168082-5168101 None:intergenic 20.0%
!! TATAGCTTATGTTATTAAGA+GGG + chr4_1:5168660-5168679 Msa0531040:three_prime_UTR 20.0%
!!! ACACACAACATATATATTTT+TGG - chr4_1:5168690-5168709 None:intergenic 20.0%
!!! ACAAATTTTTATCAAGTTCA+AGG - chr4_1:5168736-5168755 None:intergenic 20.0%
!! TTATTAACAAGTTTCATCAT+TGG + chr4_1:5167528-5167547 Msa0531040:intron 20.0%
!! TATCCTATTTATCTTATCAT+TGG + chr4_1:5167665-5167684 Msa0531040:intron 20.0%
!!! AATTATTAGGAAGATGATTT+TGG + chr4_1:5167783-5167802 Msa0531040:CDS 20.0%
!!! TTGATGGTTATTTATAAATG+AGG - chr4_1:5168082-5168101 None:intergenic 20.0%
!! TATAGCTTATGTTATTAAGA+GGG + chr4_1:5168660-5168679 Msa0531040:three_prime_UTR 20.0%
!!! ACACACAACATATATATTTT+TGG - chr4_1:5168690-5168709 None:intergenic 20.0%
!!! ACAAATTTTTATCAAGTTCA+AGG - chr4_1:5168736-5168755 None:intergenic 20.0%
! TATTATATAACTCAATCGCA+AGG + chr4_1:5166918-5166937 Msa0531040:five_prime_UTR 25.0%
! CATTGACCTTAATCAAAATA+GGG + chr4_1:5166963-5166982 Msa0531040:five_prime_UTR 25.0%
! CTTAATCAAAATAGGGAATA+GGG + chr4_1:5166970-5166989 Msa0531040:five_prime_UTR 25.0%
!!! CTAAAATTTTTGTTTCCATC+CGG - chr4_1:5167363-5167382 None:intergenic 25.0%
! GAAACTCGATATATTGTTAA+CGG - chr4_1:5167608-5167627 None:intergenic 25.0%
! GTTCCAATGATAAGATAAAT+AGG - chr4_1:5167671-5167690 None:intergenic 25.0%
!!! TTGAGTTGGATCAAATTATT+AGG + chr4_1:5167770-5167789 Msa0531040:CDS 25.0%
!!! AAGATGATTTTGGAAAGTTT+AGG + chr4_1:5167793-5167812 Msa0531040:CDS 25.0%
! GGTTATTTATAAATGAGGAA+TGG - chr4_1:5168077-5168096 None:intergenic 25.0%
!! ATTACTCATGTAAATTTTGC+AGG + chr4_1:5168245-5168264 Msa0531040:intron 25.0%
! CTATAGCTTATGTTATTAAG+AGG + chr4_1:5168659-5168678 Msa0531040:three_prime_UTR 25.0%
!! TAAATGTTGTTTGCATTCAT+TGG + chr4_1:5168756-5168775 Msa0531040:three_prime_UTR 25.0%
! TATTATATAACTCAATCGCA+AGG + chr4_1:5166918-5166937 Msa0531040:five_prime_UTR 25.0%
! CATTGACCTTAATCAAAATA+GGG + chr4_1:5166963-5166982 Msa0531040:five_prime_UTR 25.0%
! CTTAATCAAAATAGGGAATA+GGG + chr4_1:5166970-5166989 Msa0531040:five_prime_UTR 25.0%
!!! CTAAAATTTTTGTTTCCATC+CGG - chr4_1:5167363-5167382 None:intergenic 25.0%
! GAAACTCGATATATTGTTAA+CGG - chr4_1:5167608-5167627 None:intergenic 25.0%
! GTTCCAATGATAAGATAAAT+AGG - chr4_1:5167671-5167690 None:intergenic 25.0%
!!! TTGAGTTGGATCAAATTATT+AGG + chr4_1:5167770-5167789 Msa0531040:CDS 25.0%
!!! AAGATGATTTTGGAAAGTTT+AGG + chr4_1:5167793-5167812 Msa0531040:CDS 25.0%
! GGTTATTTATAAATGAGGAA+TGG - chr4_1:5168077-5168096 None:intergenic 25.0%
!! ATTACTCATGTAAATTTTGC+AGG + chr4_1:5168245-5168264 Msa0531040:intron 25.0%
! CTATAGCTTATGTTATTAAG+AGG + chr4_1:5168659-5168678 Msa0531040:three_prime_UTR 25.0%
!! TAAATGTTGTTTGCATTCAT+TGG + chr4_1:5168756-5168775 Msa0531040:three_prime_UTR 25.0%
! GCATTGACCTTAATCAAAAT+AGG + chr4_1:5166962-5166981 Msa0531040:five_prime_UTR 30.0%
!!! CCTATTCCCTATTTTGATTA+AGG - chr4_1:5166972-5166991 None:intergenic 30.0%
CCTTAATCAAAATAGGGAAT+AGG + chr4_1:5166969-5166988 Msa0531040:five_prime_UTR 30.0%
AGGTTATTGAAGACAATTAG+TGG - chr4_1:5167039-5167058 None:intergenic 30.0%
AAGCAAATATGTCTTTACGA+AGG - chr4_1:5167170-5167189 None:intergenic 30.0%
TAAGTAGCTTAGTCTCTAAA+GGG - chr4_1:5167215-5167234 None:intergenic 30.0%
TTAAGTAGCTTAGTCTCTAA+AGG - chr4_1:5167216-5167235 None:intergenic 30.0%
TAAGATATTTGCATCCTCAA+TGG - chr4_1:5167307-5167326 None:intergenic 30.0%
! CGGATGGAAACAAAAATTTT+AGG + chr4_1:5167361-5167380 Msa0531040:CDS 30.0%
ACTATTAAAGATGCTTGAAG+AGG - chr4_1:5167474-5167493 None:intergenic 30.0%
!! TTTAGGTGTTGAAAAGTACA+TGG + chr4_1:5167810-5167829 Msa0531040:CDS 30.0%
!! CACTTGATTTTGGTACAATA+TGG - chr4_1:5167947-5167966 None:intergenic 30.0%
CATATTGTACCAAAATCAAG+TGG + chr4_1:5167945-5167964 Msa0531040:CDS 30.0%
! ACTACAAAACTTTCTGAAGA+AGG - chr4_1:5168018-5168037 None:intergenic 30.0%
TATAAATGAGGAATGGTGAA+TGG - chr4_1:5168070-5168089 None:intergenic 30.0%
CTTCATTAGTTACCAATTGA+TGG - chr4_1:5168098-5168117 None:intergenic 30.0%
! CATCAATTGGTAACTAATGA+AGG + chr4_1:5168096-5168115 Msa0531040:intron 30.0%
TTTATAATGTACCCTCCATT+GGG - chr4_1:5168360-5168379 None:intergenic 30.0%
! TTTTATAATGTACCCTCCAT+TGG - chr4_1:5168361-5168380 None:intergenic 30.0%
CAAAAGGCTTAAAGAGTAAA+GGG - chr4_1:5168413-5168432 None:intergenic 30.0%
TCAAAAGGCTTAAAGAGTAA+AGG - chr4_1:5168414-5168433 None:intergenic 30.0%
ACTTACTGCTCAAATTACAT+CGG + chr4_1:5168525-5168544 Msa0531040:three_prime_UTR 30.0%
AAGTATTACTACTCTCATGA+AGG + chr4_1:5168617-5168636 Msa0531040:three_prime_UTR 30.0%
CAACACAATACTTCTTACAA+AGG - chr4_1:5168788-5168807 None:intergenic 30.0%
! GCATTGACCTTAATCAAAAT+AGG + chr4_1:5166962-5166981 Msa0531040:five_prime_UTR 30.0%
!!! CCTATTCCCTATTTTGATTA+AGG - chr4_1:5166972-5166991 None:intergenic 30.0%
CCTTAATCAAAATAGGGAAT+AGG + chr4_1:5166969-5166988 Msa0531040:five_prime_UTR 30.0%
AGGTTATTGAAGACAATTAG+TGG - chr4_1:5167039-5167058 None:intergenic 30.0%
AAGCAAATATGTCTTTACGA+AGG - chr4_1:5167170-5167189 None:intergenic 30.0%
TAAGTAGCTTAGTCTCTAAA+GGG - chr4_1:5167215-5167234 None:intergenic 30.0%
TTAAGTAGCTTAGTCTCTAA+AGG - chr4_1:5167216-5167235 None:intergenic 30.0%
TAAGATATTTGCATCCTCAA+TGG - chr4_1:5167307-5167326 None:intergenic 30.0%
! CGGATGGAAACAAAAATTTT+AGG + chr4_1:5167361-5167380 Msa0531040:CDS 30.0%
ACTATTAAAGATGCTTGAAG+AGG - chr4_1:5167474-5167493 None:intergenic 30.0%
!! TTTAGGTGTTGAAAAGTACA+TGG + chr4_1:5167810-5167829 Msa0531040:CDS 30.0%
!! CACTTGATTTTGGTACAATA+TGG - chr4_1:5167947-5167966 None:intergenic 30.0%
CATATTGTACCAAAATCAAG+TGG + chr4_1:5167945-5167964 Msa0531040:CDS 30.0%
! ACTACAAAACTTTCTGAAGA+AGG - chr4_1:5168018-5168037 None:intergenic 30.0%
TATAAATGAGGAATGGTGAA+TGG - chr4_1:5168070-5168089 None:intergenic 30.0%
CTTCATTAGTTACCAATTGA+TGG - chr4_1:5168098-5168117 None:intergenic 30.0%
! CATCAATTGGTAACTAATGA+AGG + chr4_1:5168096-5168115 Msa0531040:intron 30.0%
TTTATAATGTACCCTCCATT+GGG - chr4_1:5168360-5168379 None:intergenic 30.0%
! TTTTATAATGTACCCTCCAT+TGG - chr4_1:5168361-5168380 None:intergenic 30.0%
CAAAAGGCTTAAAGAGTAAA+GGG - chr4_1:5168413-5168432 None:intergenic 30.0%
TCAAAAGGCTTAAAGAGTAA+AGG - chr4_1:5168414-5168433 None:intergenic 30.0%
ACTTACTGCTCAAATTACAT+CGG + chr4_1:5168525-5168544 Msa0531040:three_prime_UTR 30.0%
AAGTATTACTACTCTCATGA+AGG + chr4_1:5168617-5168636 Msa0531040:three_prime_UTR 30.0%
CAACACAATACTTCTTACAA+AGG - chr4_1:5168788-5168807 None:intergenic 30.0%
GTCAATGCTTAGTTTAAGCT+AGG - chr4_1:5166950-5166969 None:intergenic 35.0%
ATCAAAATAGGGAATAGGGA+AGG + chr4_1:5166974-5166993 Msa0531040:five_prime_UTR 35.0%
AAGACAATTAGTGGAAGCTT+TGG - chr4_1:5167030-5167049 None:intergenic 35.0%
TGTCTTCAATAACCTCAACT+TGG + chr4_1:5167044-5167063 Msa0531040:CDS 35.0%
TACTAATGCCTTGTAGACTT+GGG - chr4_1:5167103-5167122 None:intergenic 35.0%
! TACAAGGCATTAGTAGAGTA+TGG + chr4_1:5167108-5167127 Msa0531040:CDS 35.0%
ATGTCTTTACGAAGGTCTAA+AGG - chr4_1:5167162-5167181 None:intergenic 35.0%
! GTGTCTAATAAGCCTTATGA+TGG + chr4_1:5167237-5167256 Msa0531040:CDS 35.0%
! AAGCCTTATGATGGCTATAT+TGG + chr4_1:5167246-5167265 Msa0531040:CDS 35.0%
TGACCAATATAGCCATCATA+AGG - chr4_1:5167252-5167271 None:intergenic 35.0%
CTATATTGGTCAATATCCAG+TGG + chr4_1:5167260-5167279 Msa0531040:CDS 35.0%
AAAGCATGACCAATATCTTG+TGG + chr4_1:5167337-5167356 Msa0531040:CDS 35.0%
AACCATACATTCTTTCTCTG+AGG + chr4_1:5167741-5167760 Msa0531040:CDS 35.0%
!!! GTTTTGTGTCACTTGTTTGA+GGG - chr4_1:5167888-5167907 None:intergenic 35.0%
!!! AGTTTTGTGTCACTTGTTTG+AGG - chr4_1:5167889-5167908 None:intergenic 35.0%
CAAACAAGTGACACAAAACT+AGG + chr4_1:5167889-5167908 Msa0531040:CDS 35.0%
TTGTACCAAAATCAAGTGGA+AGG + chr4_1:5167949-5167968 Msa0531040:CDS 35.0%
! CTAAACCTTCCACTTGATTT+TGG - chr4_1:5167957-5167976 None:intergenic 35.0%
TGATGACCAAAGATGAACAA+TGG + chr4_1:5167980-5167999 Msa0531040:CDS 35.0%
GCTTATCCATTGTTCATCTT+TGG - chr4_1:5167989-5168008 None:intergenic 35.0%
!! GAAAGTTTTGTAGTTGTGCT+TGG + chr4_1:5168024-5168043 Msa0531040:CDS 35.0%
! TCATGTAAATTTTGCAGGCA+TGG + chr4_1:5168250-5168269 Msa0531040:intron 35.0%
TTATAATGTACCCTCCATTG+GGG - chr4_1:5168359-5168378 None:intergenic 35.0%
AGGAACTCAGCATAATCAAA+AGG - chr4_1:5168429-5168448 None:intergenic 35.0%
AAGTATTATCACTCTCGAGA+AGG + chr4_1:5168450-5168469 Msa0531040:CDS 35.0%
TGTAATTTGAGCAGTAAGTG+TGG - chr4_1:5168524-5168543 None:intergenic 35.0%
CATGAGAGTAGTAATACTTG+AGG - chr4_1:5168616-5168635 None:intergenic 35.0%
GTAAATTGTCTAGAGAACAC+TGG - chr4_1:5168714-5168733 None:intergenic 35.0%
GTCAATGCTTAGTTTAAGCT+AGG - chr4_1:5166950-5166969 None:intergenic 35.0%
ATCAAAATAGGGAATAGGGA+AGG + chr4_1:5166974-5166993 Msa0531040:five_prime_UTR 35.0%
AAGACAATTAGTGGAAGCTT+TGG - chr4_1:5167030-5167049 None:intergenic 35.0%
TGTCTTCAATAACCTCAACT+TGG + chr4_1:5167044-5167063 Msa0531040:CDS 35.0%
TACTAATGCCTTGTAGACTT+GGG - chr4_1:5167103-5167122 None:intergenic 35.0%
! TACAAGGCATTAGTAGAGTA+TGG + chr4_1:5167108-5167127 Msa0531040:CDS 35.0%
ATGTCTTTACGAAGGTCTAA+AGG - chr4_1:5167162-5167181 None:intergenic 35.0%
! GTGTCTAATAAGCCTTATGA+TGG + chr4_1:5167237-5167256 Msa0531040:CDS 35.0%
! AAGCCTTATGATGGCTATAT+TGG + chr4_1:5167246-5167265 Msa0531040:CDS 35.0%
TGACCAATATAGCCATCATA+AGG - chr4_1:5167252-5167271 None:intergenic 35.0%
CTATATTGGTCAATATCCAG+TGG + chr4_1:5167260-5167279 Msa0531040:CDS 35.0%
AAAGCATGACCAATATCTTG+TGG + chr4_1:5167337-5167356 Msa0531040:CDS 35.0%
AACCATACATTCTTTCTCTG+AGG + chr4_1:5167741-5167760 Msa0531040:CDS 35.0%
!!! GTTTTGTGTCACTTGTTTGA+GGG - chr4_1:5167888-5167907 None:intergenic 35.0%
!!! AGTTTTGTGTCACTTGTTTG+AGG - chr4_1:5167889-5167908 None:intergenic 35.0%
CAAACAAGTGACACAAAACT+AGG + chr4_1:5167889-5167908 Msa0531040:CDS 35.0%
TTGTACCAAAATCAAGTGGA+AGG + chr4_1:5167949-5167968 Msa0531040:CDS 35.0%
! CTAAACCTTCCACTTGATTT+TGG - chr4_1:5167957-5167976 None:intergenic 35.0%
TGATGACCAAAGATGAACAA+TGG + chr4_1:5167980-5167999 Msa0531040:CDS 35.0%
GCTTATCCATTGTTCATCTT+TGG - chr4_1:5167989-5168008 None:intergenic 35.0%
!! GAAAGTTTTGTAGTTGTGCT+TGG + chr4_1:5168024-5168043 Msa0531040:CDS 35.0%
! TCATGTAAATTTTGCAGGCA+TGG + chr4_1:5168250-5168269 Msa0531040:intron 35.0%
TTATAATGTACCCTCCATTG+GGG - chr4_1:5168359-5168378 None:intergenic 35.0%
AGGAACTCAGCATAATCAAA+AGG - chr4_1:5168429-5168448 None:intergenic 35.0%
AAGTATTATCACTCTCGAGA+AGG + chr4_1:5168450-5168469 Msa0531040:CDS 35.0%
TGTAATTTGAGCAGTAAGTG+TGG - chr4_1:5168524-5168543 None:intergenic 35.0%
CATGAGAGTAGTAATACTTG+AGG - chr4_1:5168616-5168635 None:intergenic 35.0%
GTAAATTGTCTAGAGAACAC+TGG - chr4_1:5168714-5168733 None:intergenic 35.0%
GGAAGGACAGGTGAAAATAT+GGG + chr4_1:5166991-5167010 Msa0531040:exon 40.0%
!! AATTAGTGGAAGCTTTGGAG+TGG - chr4_1:5167025-5167044 None:intergenic 40.0%
! TAACTCCCAATTGGGACTTT+TGG - chr4_1:5167073-5167092 None:intergenic 40.0%
GACTTCACTAACTCCCAATT+GGG - chr4_1:5167081-5167100 None:intergenic 40.0%
CTACTAATGCCTTGTAGACT+TGG - chr4_1:5167104-5167123 None:intergenic 40.0%
CTCCTCAGAGAAAGAATGTA+TGG - chr4_1:5167746-5167765 None:intergenic 40.0%
!! AGGTGTTGAAAAGTACATGG+AGG + chr4_1:5167813-5167832 Msa0531040:CDS 40.0%
TGTACTTCATAACCCTGAGA+CGG - chr4_1:5167861-5167880 None:intergenic 40.0%
CTCAGGGTTATGAAGTACAA+AGG + chr4_1:5167862-5167881 Msa0531040:CDS 40.0%
ACAAAGTTCTTGTCAGTGTG+TGG - chr4_1:5167922-5167941 None:intergenic 40.0%
! ATTTTGCAGGCATGGTCAAA+CGG + chr4_1:5168258-5168277 Msa0531040:intron 40.0%
GTACATTATAAAAGCTCCCG+TGG + chr4_1:5168368-5168387 Msa0531040:CDS 40.0%
CTCGAGAGTGATAATACTTG+AGG - chr4_1:5168449-5168468 None:intergenic 40.0%
! TTTGCTATCCGCACTTATTG+TGG + chr4_1:5168486-5168505 Msa0531040:CDS 40.0%
CTCAAACACCACAATAAGTG+CGG - chr4_1:5168497-5168516 None:intergenic 40.0%
!! ATTACATCGGTGTTACGTCT+AGG + chr4_1:5168538-5168557 Msa0531040:three_prime_UTR 40.0%
GGAAGGACAGGTGAAAATAT+GGG + chr4_1:5166991-5167010 Msa0531040:exon 40.0%
!! AATTAGTGGAAGCTTTGGAG+TGG - chr4_1:5167025-5167044 None:intergenic 40.0%
! TAACTCCCAATTGGGACTTT+TGG - chr4_1:5167073-5167092 None:intergenic 40.0%
GACTTCACTAACTCCCAATT+GGG - chr4_1:5167081-5167100 None:intergenic 40.0%
CTACTAATGCCTTGTAGACT+TGG - chr4_1:5167104-5167123 None:intergenic 40.0%
CTCCTCAGAGAAAGAATGTA+TGG - chr4_1:5167746-5167765 None:intergenic 40.0%
!! AGGTGTTGAAAAGTACATGG+AGG + chr4_1:5167813-5167832 Msa0531040:CDS 40.0%
TGTACTTCATAACCCTGAGA+CGG - chr4_1:5167861-5167880 None:intergenic 40.0%
CTCAGGGTTATGAAGTACAA+AGG + chr4_1:5167862-5167881 Msa0531040:CDS 40.0%
ACAAAGTTCTTGTCAGTGTG+TGG - chr4_1:5167922-5167941 None:intergenic 40.0%
! ATTTTGCAGGCATGGTCAAA+CGG + chr4_1:5168258-5168277 Msa0531040:intron 40.0%
GTACATTATAAAAGCTCCCG+TGG + chr4_1:5168368-5168387 Msa0531040:CDS 40.0%
CTCGAGAGTGATAATACTTG+AGG - chr4_1:5168449-5168468 None:intergenic 40.0%
! TTTGCTATCCGCACTTATTG+TGG + chr4_1:5168486-5168505 Msa0531040:CDS 40.0%
CTCAAACACCACAATAAGTG+CGG - chr4_1:5168497-5168516 None:intergenic 40.0%
!! ATTACATCGGTGTTACGTCT+AGG + chr4_1:5168538-5168557 Msa0531040:three_prime_UTR 40.0%
AATAGGGAATAGGGAAGGAC+AGG + chr4_1:5166979-5166998 Msa0531040:five_prime_UTR 45.0%
GGGAAGGACAGGTGAAAATA+TGG + chr4_1:5166990-5167009 Msa0531040:exon 45.0%
! GACTTTTGGCATCCAAGTTG+AGG - chr4_1:5167059-5167078 None:intergenic 45.0%
TGGATGCCAAAAGTCCCAAT+TGG + chr4_1:5167064-5167083 Msa0531040:CDS 45.0%
GGATGCCAAAAGTCCCAATT+GGG + chr4_1:5167065-5167084 Msa0531040:CDS 45.0%
GGACTTCACTAACTCCCAAT+TGG - chr4_1:5167082-5167101 None:intergenic 45.0%
AGTGAAGTCCCAAGTCTACA+AGG + chr4_1:5167092-5167111 Msa0531040:CDS 45.0%
! GTAGCTTAGTCTCTAAAGGG+AGG - chr4_1:5167212-5167231 None:intergenic 45.0%
CTCTCATAAAGTGGAACCAC+TGG - chr4_1:5167279-5167298 None:intergenic 45.0%
GGTTCCACTTTATGAGAGCA+TGG + chr4_1:5167281-5167300 Msa0531040:CDS 45.0%
ATGGCCATGCTCTCATAAAG+TGG - chr4_1:5167288-5167307 None:intergenic 45.0%
! TTATGAGAGCATGGCCATTG+AGG + chr4_1:5167290-5167309 Msa0531040:CDS 45.0%
CATGACCAATATCTTGTGGC+CGG + chr4_1:5167341-5167360 Msa0531040:CDS 45.0%
CGAGTTTCTTCAAAGTGACG+TGG + chr4_1:5167620-5167639 Msa0531040:intron 45.0%
! CTCTGAGGAGCTAATTGAGT+TGG + chr4_1:5167756-5167775 Msa0531040:CDS 45.0%
ACTCAACCAATTACCGTCTC+AGG + chr4_1:5167845-5167864 Msa0531040:CDS 45.0%
CTCAACCAATTACCGTCTCA+GGG + chr4_1:5167846-5167865 Msa0531040:CDS 45.0%
CATAACCCTGAGACGGTAAT+TGG - chr4_1:5167854-5167873 None:intergenic 45.0%
AATGCATGTGACCACGATCT+GGG - chr4_1:5168166-5168185 None:intergenic 45.0%
AAATGCATGTGACCACGATC+TGG - chr4_1:5168167-5168186 None:intergenic 45.0%
! TTTTGCAGGCATGGTCAAAC+GGG + chr4_1:5168259-5168278 Msa0531040:intron 45.0%
! AATGAGGCAAGGTATTCAGC+AGG + chr4_1:5168321-5168340 Msa0531040:CDS 45.0%
! ATGAGGCAAGGTATTCAGCA+GGG + chr4_1:5168322-5168341 Msa0531040:CDS 45.0%
TTGTTCTCTAACCCCAATGG+AGG + chr4_1:5168345-5168364 Msa0531040:CDS 45.0%
TGTTCTCTAACCCCAATGGA+GGG + chr4_1:5168346-5168365 Msa0531040:CDS 45.0%
TTATCACTCTCGAGAAGGCA+TGG + chr4_1:5168455-5168474 Msa0531040:CDS 45.0%
! TATCACTCTCGAGAAGGCAT+GGG + chr4_1:5168456-5168475 Msa0531040:CDS 45.0%
ACTACTCTCATGAAGGCCAA+AGG + chr4_1:5168624-5168643 Msa0531040:three_prime_UTR 45.0%
CTACTCTCATGAAGGCCAAA+GGG + chr4_1:5168625-5168644 Msa0531040:three_prime_UTR 45.0%
ATAGCTCAAACCCATCCCTT+TGG - chr4_1:5168643-5168662 None:intergenic 45.0%
AATAGGGAATAGGGAAGGAC+AGG + chr4_1:5166979-5166998 Msa0531040:five_prime_UTR 45.0%
GGGAAGGACAGGTGAAAATA+TGG + chr4_1:5166990-5167009 Msa0531040:exon 45.0%
! GACTTTTGGCATCCAAGTTG+AGG - chr4_1:5167059-5167078 None:intergenic 45.0%
TGGATGCCAAAAGTCCCAAT+TGG + chr4_1:5167064-5167083 Msa0531040:CDS 45.0%
GGATGCCAAAAGTCCCAATT+GGG + chr4_1:5167065-5167084 Msa0531040:CDS 45.0%
GGACTTCACTAACTCCCAAT+TGG - chr4_1:5167082-5167101 None:intergenic 45.0%
AGTGAAGTCCCAAGTCTACA+AGG + chr4_1:5167092-5167111 Msa0531040:CDS 45.0%
! GTAGCTTAGTCTCTAAAGGG+AGG - chr4_1:5167212-5167231 None:intergenic 45.0%
CTCTCATAAAGTGGAACCAC+TGG - chr4_1:5167279-5167298 None:intergenic 45.0%
GGTTCCACTTTATGAGAGCA+TGG + chr4_1:5167281-5167300 Msa0531040:CDS 45.0%
ATGGCCATGCTCTCATAAAG+TGG - chr4_1:5167288-5167307 None:intergenic 45.0%
! TTATGAGAGCATGGCCATTG+AGG + chr4_1:5167290-5167309 Msa0531040:CDS 45.0%
CATGACCAATATCTTGTGGC+CGG + chr4_1:5167341-5167360 Msa0531040:CDS 45.0%
CGAGTTTCTTCAAAGTGACG+TGG + chr4_1:5167620-5167639 Msa0531040:intron 45.0%
! CTCTGAGGAGCTAATTGAGT+TGG + chr4_1:5167756-5167775 Msa0531040:CDS 45.0%
ACTCAACCAATTACCGTCTC+AGG + chr4_1:5167845-5167864 Msa0531040:CDS 45.0%
CTCAACCAATTACCGTCTCA+GGG + chr4_1:5167846-5167865 Msa0531040:CDS 45.0%
CATAACCCTGAGACGGTAAT+TGG - chr4_1:5167854-5167873 None:intergenic 45.0%
AATGCATGTGACCACGATCT+GGG - chr4_1:5168166-5168185 None:intergenic 45.0%
AAATGCATGTGACCACGATC+TGG - chr4_1:5168167-5168186 None:intergenic 45.0%
! TTTTGCAGGCATGGTCAAAC+GGG + chr4_1:5168259-5168278 Msa0531040:intron 45.0%
! AATGAGGCAAGGTATTCAGC+AGG + chr4_1:5168321-5168340 Msa0531040:CDS 45.0%
! ATGAGGCAAGGTATTCAGCA+GGG + chr4_1:5168322-5168341 Msa0531040:CDS 45.0%
TTGTTCTCTAACCCCAATGG+AGG + chr4_1:5168345-5168364 Msa0531040:CDS 45.0%
TGTTCTCTAACCCCAATGGA+GGG + chr4_1:5168346-5168365 Msa0531040:CDS 45.0%
TTATCACTCTCGAGAAGGCA+TGG + chr4_1:5168455-5168474 Msa0531040:CDS 45.0%
! TATCACTCTCGAGAAGGCAT+GGG + chr4_1:5168456-5168475 Msa0531040:CDS 45.0%
ACTACTCTCATGAAGGCCAA+AGG + chr4_1:5168624-5168643 Msa0531040:three_prime_UTR 45.0%
CTACTCTCATGAAGGCCAAA+GGG + chr4_1:5168625-5168644 Msa0531040:three_prime_UTR 45.0%
ATAGCTCAAACCCATCCCTT+TGG - chr4_1:5168643-5168662 None:intergenic 45.0%
ACCAATATCTTGTGGCCGGA+TGG + chr4_1:5167345-5167364 Msa0531040:CDS 50.0%
TCCATCCGGCCACAAGATAT+TGG - chr4_1:5167349-5167368 None:intergenic 50.0%
! TCTTGTCAGTGTGTGGACTG+AGG - chr4_1:5167915-5167934 None:intergenic 50.0%
CTCATCATCACCCGGTGAAA+TGG - chr4_1:5168297-5168316 None:intergenic 50.0%
! TTTCACCGGGTGATGATGAG+TGG + chr4_1:5168297-5168316 Msa0531040:CDS 50.0%
! TTCACCGGGTGATGATGAGT+GGG + chr4_1:5168298-5168317 Msa0531040:CDS 50.0%
CATTCCCACTCATCATCACC+CGG - chr4_1:5168305-5168324 None:intergenic 50.0%
! GGTGATGATGAGTGGGAATG+AGG + chr4_1:5168305-5168324 Msa0531040:CDS 50.0%
TGATGAGTGGGAATGAGGCA+AGG + chr4_1:5168310-5168329 Msa0531040:CDS 50.0%
GGGTTGTTCTCTAACCCCAA+TGG + chr4_1:5168342-5168361 Msa0531040:CDS 50.0%
TATAAAAGCTCCCGTGGAGC+TGG + chr4_1:5168374-5168393 Msa0531040:CDS 50.0%
! ATCACTCTCGAGAAGGCATG+GGG + chr4_1:5168457-5168476 Msa0531040:CDS 50.0%
TCTCATGAAGGCCAAAGGGA+TGG + chr4_1:5168629-5168648 Msa0531040:three_prime_UTR 50.0%
CTCATGAAGGCCAAAGGGAT+GGG + chr4_1:5168630-5168649 Msa0531040:three_prime_UTR 50.0%
ACCAATATCTTGTGGCCGGA+TGG + chr4_1:5167345-5167364 Msa0531040:CDS 50.0%
TCCATCCGGCCACAAGATAT+TGG - chr4_1:5167349-5167368 None:intergenic 50.0%
! TCTTGTCAGTGTGTGGACTG+AGG - chr4_1:5167915-5167934 None:intergenic 50.0%
CTCATCATCACCCGGTGAAA+TGG - chr4_1:5168297-5168316 None:intergenic 50.0%
! TTTCACCGGGTGATGATGAG+TGG + chr4_1:5168297-5168316 Msa0531040:CDS 50.0%
! TTCACCGGGTGATGATGAGT+GGG + chr4_1:5168298-5168317 Msa0531040:CDS 50.0%
CATTCCCACTCATCATCACC+CGG - chr4_1:5168305-5168324 None:intergenic 50.0%
! GGTGATGATGAGTGGGAATG+AGG + chr4_1:5168305-5168324 Msa0531040:CDS 50.0%
TGATGAGTGGGAATGAGGCA+AGG + chr4_1:5168310-5168329 Msa0531040:CDS 50.0%
GGGTTGTTCTCTAACCCCAA+TGG + chr4_1:5168342-5168361 Msa0531040:CDS 50.0%
TATAAAAGCTCCCGTGGAGC+TGG + chr4_1:5168374-5168393 Msa0531040:CDS 50.0%
! ATCACTCTCGAGAAGGCATG+GGG + chr4_1:5168457-5168476 Msa0531040:CDS 50.0%
TCTCATGAAGGCCAAAGGGA+TGG + chr4_1:5168629-5168648 Msa0531040:three_prime_UTR 50.0%
CTCATGAAGGCCAAAGGGAT+GGG + chr4_1:5168630-5168649 Msa0531040:three_prime_UTR 50.0%
TGATGTCGTAGCCCAGATCG+TGG + chr4_1:5168152-5168171 Msa0531040:intron 55.0%
GGCTGCATTCGCCATTTCAC+CGG + chr4_1:5168283-5168302 Msa0531040:CDS 55.0%
GCTGCATTCGCCATTTCACC+GGG + chr4_1:5168284-5168303 Msa0531040:CDS 55.0%
! TCACTCTCGAGAAGGCATGG+GGG + chr4_1:5168458-5168477 Msa0531040:CDS 55.0%
TGATGTCGTAGCCCAGATCG+TGG + chr4_1:5168152-5168171 Msa0531040:intron 55.0%
GGCTGCATTCGCCATTTCAC+CGG + chr4_1:5168283-5168302 Msa0531040:CDS 55.0%
GCTGCATTCGCCATTTCACC+GGG + chr4_1:5168284-5168303 Msa0531040:CDS 55.0%
! TCACTCTCGAGAAGGCATGG+GGG + chr4_1:5168458-5168477 Msa0531040:CDS 55.0%
TGCAGGCATGGTCAAACGGG+AGG + chr4_1:5168262-5168281 Msa0531040:intron 60.0%
AAAAGCTCCCGTGGAGCTGG+TGG + chr4_1:5168377-5168396 Msa0531040:CDS 60.0%
TCCTCATCCACCAGCTCCAC+GGG - chr4_1:5168387-5168406 None:intergenic 60.0%
CTCCTCATCCACCAGCTCCA+CGG - chr4_1:5168388-5168407 None:intergenic 60.0%
TGCAGGCATGGTCAAACGGG+AGG + chr4_1:5168262-5168281 Msa0531040:intron 60.0%
AAAAGCTCCCGTGGAGCTGG+TGG + chr4_1:5168377-5168396 Msa0531040:CDS 60.0%
TCCTCATCCACCAGCTCCAC+GGG - chr4_1:5168387-5168406 None:intergenic 60.0%
CTCCTCATCCACCAGCTCCA+CGG - chr4_1:5168388-5168407 None:intergenic 60.0%
! TCCCGTGGAGCTGGTGGATG+AGG + chr4_1:5168383-5168402 Msa0531040:CDS 65.0%
! CTCGAGAAGGCATGGGGGCT+CGG + chr4_1:5168463-5168482 Msa0531040:CDS 65.0%
! TCCCGTGGAGCTGGTGGATG+AGG + chr4_1:5168383-5168402 Msa0531040:CDS 65.0%
! CTCGAGAAGGCATGGGGGCT+CGG + chr4_1:5168463-5168482 Msa0531040:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 5166843 5168915 5166843 ID=Msa0531040;Name=Msa0531040
chr4_1 mRNA 5166843 5168915 5166843 ID=Msa0531040-mRNA-1;Parent=Msa0531040;Name=Msa0531040-mRNA-1;_AED=0.11;_eAED=0.11;_QI=166|1|1|1|1|1|3|400|314
chr4_1 exon 5166843 5167382 5166843 ID=Msa0531040-mRNA-1:exon:1550;Parent=Msa0531040-mRNA-1
chr4_1 exon 5167738 5168059 5167738 ID=Msa0531040-mRNA-1:exon:1551;Parent=Msa0531040-mRNA-1
chr4_1 exon 5168267 5168915 5168267 ID=Msa0531040-mRNA-1:exon:1552;Parent=Msa0531040-mRNA-1
chr4_1 five_prime_UTR 5166843 5167008 5166843 ID=Msa0531040-mRNA-1:five_prime_utr;Parent=Msa0531040-mRNA-1
chr4_1 CDS 5167009 5167382 5167009 ID=Msa0531040-mRNA-1:cds;Parent=Msa0531040-mRNA-1
chr4_1 CDS 5167738 5168059 5167738 ID=Msa0531040-mRNA-1:cds;Parent=Msa0531040-mRNA-1
chr4_1 CDS 5168267 5168515 5168267 ID=Msa0531040-mRNA-1:cds;Parent=Msa0531040-mRNA-1
chr4_1 three_prime_UTR 5168516 5168915 5168516 ID=Msa0531040-mRNA-1:three_prime_utr;Parent=Msa0531040-mRNA-1
Gene Sequence

>Msa0531040

ATGGGCTCAGAAACCACTCCAAAGCTTCCACTAATTGTCTTCAATAACCTCAACTTGGATGCCAAAAGTCCCAATTGGGAGTTAGTGAAGTCCCAAGTCTACAAGGCATTAGTAGAGTATGGTTGTTTTGAAGCGATTTTTGATAAAGTTCCTTTAGACCTTCGTAAAGACATATTTGCTTCAATAGAAGAGCTCTTTGACCTCCCTTTAGAGACTAAGCTACTTAATGTGTCTAATAAGCCTTATGATGGCTATATTGGTCAATATCCAGTGGTTCCACTTTATGAGAGCATGGCCATTGAGGATGCAAATATCTTAGAGAAAGTAAAAAGCATGACCAATATCTTGTGGCCGGATGGAAACAAAAATTTTAGTGAAACCATACATTCTTTCTCTGAGGAGCTAATTGAGTTGGATCAAATTATTAGGAAGATGATTTTGGAAAGTTTAGGTGTTGAAAAGTACATGGAGGAACACATGAACTCAACCAATTACCGTCTCAGGGTTATGAAGTACAAAGGCCCTCAAACAAGTGACACAAAACTAGGCCTCAGTCCACACACTGACAAGAACTTTGTGACCATATTGTACCAAAATCAAGTGGAAGGTTTAGAGATGATGACCAAAGATGAACAATGGATAAGCTACAAGCCTTCTTCAGAAAGTTTTGTAGTTGTGCTTGGTGATTCTATGCATGCATGGTCAAACGGGAGGCTGCATTCGCCATTTCACCGGGTGATGATGAGTGGGAATGAGGCAAGGTATTCAGCAGGGTTGTTCTCTAACCCCAATGGAGGGTACATTATAAAAGCTCCCGTGGAGCTGGTGGATGAGGAGCACCCTTTACTCTTTAAGCCTTTTGATTATGCTGAGTTCCTCAAGTATTATCACTCTCGAGAAGGCATGGGGGCTCGGTTTGCTATCCGCACTTATTGTGGTGTTTGA

Protein sequence

>Msa0531040

MGSETTPKLPLIVFNNLNLDAKSPNWELVKSQVYKALVEYGCFEAIFDKVPLDLRKDIFASIEELFDLPLETKLLNVSNKPYDGYIGQYPVVPLYESMAIEDANILEKVKSMTNILWPDGNKNFSETIHSFSEELIELDQIIRKMILESLGVEKYMEEHMNSTNYRLRVMKYKGPQTSDTKLGLSPHTDKNFVTILYQNQVEGLEMMTKDEQWISYKPSSESFVVVLGDSMHAWSNGRLHSPFHRVMMSGNEARYSAGLFSNPNGGYIIKAPVELVDEEHPLLFKPFDYAEFLKYYHSREGMGARFAIRTYCGV*