Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0166560 | Msa0940520 | 0.802055 | 6.727854e-49 | -8.615850e-47 |
| Msa0207350 | Msa0940520 | 0.812986 | 3.216615e-51 | -8.615850e-47 |
| Msa0214550 | Msa0940520 | 0.813693 | 2.249893e-51 | -8.615850e-47 |
| Msa0259210 | Msa0940520 | 0.819188 | 1.324192e-52 | -8.615850e-47 |
| Msa0281530 | Msa0940520 | 0.803650 | 3.149764e-49 | -8.615850e-47 |
| Msa0300690 | Msa0940520 | 0.806848 | 6.739801e-50 | -8.615850e-47 |
| Msa0336320 | Msa0940520 | 0.804449 | 2.149242e-49 | -8.615850e-47 |
| Msa0343850 | Msa0940520 | 0.814106 | 1.824472e-51 | -8.615850e-47 |
| Msa0844410 | Msa0940520 | 0.834530 | 2.842205e-56 | -8.615850e-47 |
| Msa0844420 | Msa0940520 | 0.831910 | 1.276896e-55 | -8.615850e-47 |
| Msa0844470 | Msa0940520 | 0.821043 | 4.979055e-53 | -8.615850e-47 |
| Msa0844490 | Msa0940520 | 0.841763 | 3.900419e-58 | -8.615850e-47 |
| Msa0940520 | Msa1043370 | 0.803215 | 3.876361e-49 | -8.615850e-47 |
| Msa0940520 | Msa1079230 | 0.801976 | 6.981520e-49 | -8.615850e-47 |
| Msa0940520 | Msa1276890 | 0.800242 | 1.580236e-48 | -8.615850e-47 |
| Msa0940520 | Msa1286800 | 0.814247 | 1.697501e-51 | -8.615850e-47 |
| Msa0940520 | Msa1287190 | 0.800403 | 1.465180e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGAATGGGTAGTTAAT+AGG | 0.188993 | 6_3:-13021832 | None:intergenic |
| GACCTACTTCTACTTCTTTC+AGG | 0.200500 | 6_3:-13022679 | None:intergenic |
| CGTTTCTTTGGATTGATAAT+TGG | 0.208427 | 6_3:-13021931 | None:intergenic |
| GAACTTGCGGGTCGTTTCTT+TGG | 0.255792 | 6_3:-13021943 | None:intergenic |
| GGATGGGCATCTCTAAGTTT+AGG | 0.266495 | 6_3:-13022658 | None:intergenic |
| TCCGATGATGATTGATAATC+TGG | 0.312697 | 6_3:+13022786 | Msa0940520:CDS |
| GATGGGCATCTCTAAGTTTA+GGG | 0.341247 | 6_3:-13022657 | None:intergenic |
| ATCTCAAAGGACAACAATCT+TGG | 0.354499 | 6_3:+13022330 | Msa0940520:CDS |
| GAAGGAATGAAGTAAATAGA+TGG | 0.354839 | 6_3:-13021785 | None:intergenic |
| TCGAAATACTAGTCATCAAC+AGG | 0.355011 | 6_3:-13024981 | None:intergenic |
| TAAGTTTGGCTGACTTAGAC+TGG | 0.355317 | 6_3:+13022231 | Msa0940520:CDS |
| TTACATGTCTATAATTGTTT+CGG | 0.356224 | 6_3:-13022463 | None:intergenic |
| CTTTGTTGGTTTGTATGTAT+TGG | 0.361668 | 6_3:-13021974 | None:intergenic |
| AGAGGAAGAGAGGAAGAGAT+TGG | 0.369125 | 6_3:+13024925 | Msa0940520:CDS |
| GAGGAAGAGAGGAAGAGATT+GGG | 0.371324 | 6_3:+13024926 | Msa0940520:CDS |
| TATATGATGGCTAATGGATT+TGG | 0.372541 | 6_3:+13022389 | Msa0940520:CDS |
| AAAAGAATGGGTAGTTAATA+GGG | 0.390883 | 6_3:-13021831 | None:intergenic |
| ATCGAAATGGCTAGAGCATC+AGG | 0.391094 | 6_3:+13022006 | Msa0940520:CDS |
| AGGAAGAGAGGAAGAGATTG+GGG | 0.430524 | 6_3:+13024927 | Msa0940520:CDS |
| TCTGATAATCTATACGTTTG+AGG | 0.431535 | 6_3:-13021880 | None:intergenic |
| AACGACTATATGATGGCTAA+TGG | 0.444290 | 6_3:+13022383 | Msa0940520:CDS |
| TTTCAGGGATATCTTAGTGC+TGG | 0.452770 | 6_3:+13024894 | Msa0940520:intron |
| GTTGTCCTTTGAGATCATAA+TGG | 0.453325 | 6_3:-13022322 | None:intergenic |
| GTGGTACAGATGTGCGGGAC+AGG | 0.467436 | 6_3:+13022429 | Msa0940520:CDS |
| TTGGAAGCACAAGAACTTGC+GGG | 0.479601 | 6_3:-13021955 | None:intergenic |
| TAGCTGGTGAAGAAACTTCT+CGG | 0.481083 | 6_3:-13022708 | None:intergenic |
| TCTCAAAGGACAACAATCTT+GGG | 0.483239 | 6_3:+13022331 | Msa0940520:CDS |
| TACTTCTACTTCTTTCAGGA+TGG | 0.490924 | 6_3:-13022675 | None:intergenic |
| AGCTGGTGAAGAAACTTCTC+GGG | 0.494065 | 6_3:-13022707 | None:intergenic |
| GGAGTCTGAGGACCAACAAC+GGG | 0.500481 | 6_3:-13022766 | None:intergenic |
| AAGGAATGAAGTAAATAGAT+GGG | 0.504150 | 6_3:-13021784 | None:intergenic |
| ATGAATGTATTGCCCGTTGT+TGG | 0.508534 | 6_3:+13022754 | Msa0940520:CDS |
| ATAGCAATATGTAGTGGGTT+GGG | 0.508742 | 6_3:+13022835 | Msa0940520:CDS |
| TAGTCATCAACAGGGTCCCT+TGG | 0.510016 | 6_3:-13024972 | None:intergenic |
| TATAGCAATATGTAGTGGGT+TGG | 0.511594 | 6_3:+13022834 | Msa0940520:CDS |
| GGTCATCTTCCCTTGAAAAG+TGG | 0.522173 | 6_3:+13022410 | Msa0940520:CDS |
| TGCTTAAAAGAGTCGCGCGA+AGG | 0.523720 | 6_3:+13022285 | Msa0940520:CDS |
| AAAACTTGTCGGGTTCTAGC+TGG | 0.534146 | 6_3:-13022724 | None:intergenic |
| ATTATCAGAATCTTTGTGCA+TGG | 0.534879 | 6_3:+13021894 | Msa0940520:exon |
| GGGTAGTTAATAGGGTGGAT+AGG | 0.541156 | 6_3:-13021823 | None:intergenic |
| ACTTCTACTTCTTTCAGGAT+GGG | 0.541424 | 6_3:-13022674 | None:intergenic |
| AGGTGGTTGAATAAAATTGA+AGG | 0.543475 | 6_3:-13021803 | None:intergenic |
| GCTTGTGAACGACTATATGA+TGG | 0.550104 | 6_3:+13022376 | Msa0940520:CDS |
| AGTGTATAGCAATATGTAGT+GGG | 0.556723 | 6_3:+13022830 | Msa0940520:CDS |
| GAAAAGTGGTACAGATGTGC+GGG | 0.556874 | 6_3:+13022424 | Msa0940520:CDS |
| TTTGTCCATTATGATCTCAA+AGG | 0.564418 | 6_3:+13022317 | Msa0940520:CDS |
| AAGTGTATAGCAATATGTAG+TGG | 0.577318 | 6_3:+13022829 | Msa0940520:CDS |
| GAAGAGAGGAAGAGATTGGG+GGG | 0.577597 | 6_3:+13024929 | Msa0940520:CDS |
| GGAAGAGAGGAAGAGATTGG+GGG | 0.591621 | 6_3:+13024928 | Msa0940520:CDS |
| GTGGGTTGGGACATAATTCG+AGG | 0.592606 | 6_3:+13022848 | Msa0940520:CDS |
| TAGTTAATAGGGTGGATAGG+TGG | 0.594024 | 6_3:-13021820 | None:intergenic |
| TCCAGATTATCAATCATCAT+CGG | 0.603550 | 6_3:-13022787 | None:intergenic |
| AAGTTTGGCTGACTTAGACT+GGG | 0.605378 | 6_3:+13022232 | Msa0940520:CDS |
| TCAATCATCATCGGAGTCTG+AGG | 0.608321 | 6_3:-13022778 | None:intergenic |
| AGAATGGGTAGTTAATAGGG+TGG | 0.609731 | 6_3:-13021828 | None:intergenic |
| CGGAGTCTGAGGACCAACAA+CGG | 0.626597 | 6_3:-13022767 | None:intergenic |
| ACAATGCAGATGAAACTCCA+AGG | 0.629379 | 6_3:+13024955 | Msa0940520:CDS |
| ATTGGAAGCACAAGAACTTG+CGG | 0.631212 | 6_3:-13021956 | None:intergenic |
| AAGAGAGGAAGAGATTGGGG+GGG | 0.643835 | 6_3:+13024930 | Msa0940520:CDS |
| TGAAAAGTGGTACAGATGTG+CGG | 0.647173 | 6_3:+13022423 | Msa0940520:CDS |
| ATCCTGAAAGAAGTAGAAGT+AGG | 0.651988 | 6_3:+13022677 | Msa0940520:CDS |
| GGTGTTGCTGAGAGGAAGAG+AGG | 0.655234 | 6_3:+13024915 | Msa0940520:CDS |
| TGGGTTGGGACATAATTCGA+GGG | 0.676408 | 6_3:+13022849 | Msa0940520:CDS |
| CAATGCAGATGAAACTCCAA+GGG | 0.677442 | 6_3:+13024956 | Msa0940520:CDS |
| CGAAATACTAGTCATCAACA+GGG | 0.682603 | 6_3:-13024980 | None:intergenic |
| TTAGTGCTGGTGTTGCTGAG+AGG | 0.684318 | 6_3:+13024907 | Msa0940520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTATACAAAAGAAT+GGG | - | chr6_3:13021846-13021865 | None:intergenic | 10.0% |
| !! | AAAAAAATTATACAAAAGAA+TGG | - | chr6_3:13021847-13021866 | None:intergenic | 10.0% |
| !!! | AATTTAACATTAAGTTTTTT+TGG | + | chr6_3:13022538-13022557 | Msa0940520:intron | 10.0% |
| !!! | CTAATTTACATTTTTTTATA+TGG | - | chr6_3:13023747-13023766 | None:intergenic | 10.0% |
| !! | CATATAAAAAAATGTAAATT+AGG | + | chr6_3:13023745-13023764 | Msa0940520:intron | 10.0% |
| !! | AAAGAAAAATAAAATCGAAA+TGG | + | chr6_3:13021993-13022012 | Msa0940520:CDS | 15.0% |
| !! | ATGAAATTACTAAATAGATT+TGG | - | chr6_3:13022061-13022080 | None:intergenic | 15.0% |
| !! | ATATAGTAAATCAATTGTTA+AGG | + | chr6_3:13023248-13023267 | Msa0940520:intron | 15.0% |
| !!! | TTAAGGTAAATCAATTTTTT+TGG | + | chr6_3:13023265-13023284 | Msa0940520:intron | 15.0% |
| !!! | TTGTTTTTTTCATTATTGTT+CGG | + | chr6_3:13023425-13023444 | Msa0940520:intron | 15.0% |
| !! | CATGAAATTATTATGTTTAA+AGG | + | chr6_3:13023618-13023637 | Msa0940520:intron | 15.0% |
| !! | AATAAAGAAAAAGTAAAATC+AGG | + | chr6_3:13023681-13023700 | Msa0940520:intron | 15.0% |
| !! | ATAAAGAAAAAGTAAAATCA+GGG | + | chr6_3:13023682-13023701 | Msa0940520:intron | 15.0% |
| !!! | TAATCAATTTCAAAATCTTT+TGG | - | chr6_3:13023866-13023885 | None:intergenic | 15.0% |
| !!! | AGAGATTTTTGATATATAAT+AGG | - | chr6_3:13023926-13023945 | None:intergenic | 15.0% |
| !! | ATTAAAAAGAATGAAGTTAA+TGG | + | chr6_3:13024224-13024243 | Msa0940520:intron | 15.0% |
| !! | AAAAAAAAGAATGAAGTTAA+TGG | + | chr6_3:13024279-13024298 | Msa0940520:intron | 15.0% |
| !!! | TTTAGAAATTCATACTTTTA+AGG | - | chr6_3:13024534-13024553 | None:intergenic | 15.0% |
| !!! | TTTGATTTCTTAAATCATAA+AGG | - | chr6_3:13024774-13024793 | None:intergenic | 15.0% |
| !!! | AAAACTATGTTGATTTTTTT+TGG | + | chr6_3:13024792-13024811 | Msa0940520:intron | 15.0% |
| !!! | TTGATTAATTTTGATTTTGA+AGG | + | chr6_3:13024822-13024841 | Msa0940520:intron | 15.0% |
| !!! | TGATTAATTTTGATTTTGAA+GGG | + | chr6_3:13024823-13024842 | Msa0940520:intron | 15.0% |
| !!! | TCGATTTTATTTTTCTTTGT+TGG | - | chr6_3:13021991-13022010 | None:intergenic | 20.0% |
| !! | TTACATGTCTATAATTGTTT+CGG | - | chr6_3:13022466-13022485 | None:intergenic | 20.0% |
| !! | AATTTAACCTTAAGCTTATT+CGG | - | chr6_3:13023363-13023382 | None:intergenic | 20.0% |
| !!! | TTTTTTTATATGGCTTCTTT+GGG | - | chr6_3:13023737-13023756 | None:intergenic | 20.0% |
| !!! | ATTTTTTTATATGGCTTCTT+TGG | - | chr6_3:13023738-13023757 | None:intergenic | 20.0% |
| !!! | TTGGTTTATGTTTCATTTTT+TGG | - | chr6_3:13023847-13023866 | None:intergenic | 20.0% |
| !! | TTTGATATATAATAGGTCAT+AGG | - | chr6_3:13023919-13023938 | None:intergenic | 20.0% |
| !!! | TTGATATATTTTCTTAGATC+TGG | - | chr6_3:13023950-13023969 | None:intergenic | 20.0% |
| !! | AGTTGATTATACAATTTACA+TGG | - | chr6_3:13024128-13024147 | None:intergenic | 20.0% |
| !! | AATTCTTATTCAGTTAATAG+TGG | + | chr6_3:13024330-13024349 | Msa0940520:intron | 20.0% |
| !! | TATTAGACTTTGTATACTTT+GGG | - | chr6_3:13024508-13024527 | None:intergenic | 20.0% |
| !! | TTATTAGACTTTGTATACTT+TGG | - | chr6_3:13024509-13024528 | None:intergenic | 20.0% |
| !! | TAAAAGTTATTGAAAAAGAG+AGG | + | chr6_3:13024640-13024659 | Msa0940520:intron | 20.0% |
| !!! | AAAAAGAGAGGTATTTTTTT+TGG | + | chr6_3:13024652-13024671 | Msa0940520:intron | 20.0% |
| !!! | GTTTTGTTCTTATATCATAA+GGG | - | chr6_3:13024699-13024718 | None:intergenic | 20.0% |
| !!! | AGTTTTGTTCTTATATCATA+AGG | - | chr6_3:13024700-13024719 | None:intergenic | 20.0% |
| ! | AAGGAATGAAGTAAATAGAT+GGG | - | chr6_3:13021787-13021806 | None:intergenic | 25.0% |
| ! | AAAAGAATGGGTAGTTAATA+GGG | - | chr6_3:13021834-13021853 | None:intergenic | 25.0% |
| !!! | TTTTCAGTTTAGAGTAAGTT+TGG | + | chr6_3:13022217-13022236 | Msa0940520:intron | 25.0% |
| !! | AACTGATATTGACATTTTTC+TGG | + | chr6_3:13022256-13022275 | Msa0940520:CDS | 25.0% |
| !!! | TTTTTTGTTTCTTTCCTTCA+TGG | + | chr6_3:13022491-13022510 | Msa0940520:intron | 25.0% |
| !! | GTTTTTATTCTTTTAAGCTC+CGG | + | chr6_3:13022564-13022583 | Msa0940520:intron | 25.0% |
| ! | GGTTAAATTTGTAGAAAAGA+AGG | + | chr6_3:13023374-13023393 | Msa0940520:intron | 25.0% |
| ! | TACATAGTTAGGAAACAATA+CGG | - | chr6_3:13023496-13023515 | None:intergenic | 25.0% |
| ! | TGTTGAATGAATACATAGTT+AGG | - | chr6_3:13023507-13023526 | None:intergenic | 25.0% |
| ! | AAGTCATAATCCAAATAGTT+CGG | + | chr6_3:13023562-13023581 | Msa0940520:intron | 25.0% |
| !!! | TTTTCAGTTTTATGCCATTT+TGG | - | chr6_3:13023662-13023681 | None:intergenic | 25.0% |
| !!! | CAATTTGTTTTTTTTTTCCG+TGG | + | chr6_3:13024026-13024045 | Msa0940520:intron | 25.0% |
| ! | CGTATTAATTACACTATATG+AGG | + | chr6_3:13024189-13024208 | Msa0940520:intron | 25.0% |
| !!! | AGTTAATGGATTAAGTTTGA+TGG | + | chr6_3:13024238-13024257 | Msa0940520:intron | 25.0% |
| !!! | GTTAATGGATTAAGTTTGAT+GGG | + | chr6_3:13024239-13024258 | Msa0940520:intron | 25.0% |
| ! | TGGAAAAAAAATGAAGAGAT+GGG | + | chr6_3:13024350-13024369 | Msa0940520:intron | 25.0% |
| ! | TTGAAGATGAAAGAATAAAG+AGG | + | chr6_3:13024400-13024419 | Msa0940520:intron | 25.0% |
| !! | TCCTCATTTTCTTGTATTTT+AGG | + | chr6_3:13024461-13024480 | Msa0940520:intron | 25.0% |
| !! | CCTCATTTTCTTGTATTTTA+GGG | + | chr6_3:13024462-13024481 | Msa0940520:intron | 25.0% |
| !!! | TTTTCTTGTATTTTAGGGTT+AGG | + | chr6_3:13024467-13024486 | Msa0940520:intron | 25.0% |
| !!! | TATTTTAGGGTTAGGATAAA+TGG | + | chr6_3:13024475-13024494 | Msa0940520:intron | 25.0% |
| !!! | ATTTTAGGGTTAGGATAAAT+GGG | + | chr6_3:13024476-13024495 | Msa0940520:intron | 25.0% |
| ! | GTTGTTTATAAAGATACGAT+TGG | - | chr6_3:13024581-13024600 | None:intergenic | 25.0% |
| GAAGGAATGAAGTAAATAGA+TGG | - | chr6_3:13021788-13021807 | None:intergenic | 30.0% | |
| AGGTGGTTGAATAAAATTGA+AGG | - | chr6_3:13021806-13021825 | None:intergenic | 30.0% | |
| CAAAAGAATGGGTAGTTAAT+AGG | - | chr6_3:13021835-13021854 | None:intergenic | 30.0% | |
| TCTGATAATCTATACGTTTG+AGG | - | chr6_3:13021883-13021902 | None:intergenic | 30.0% | |
| ATTATCAGAATCTTTGTGCA+TGG | + | chr6_3:13021894-13021913 | Msa0940520:exon | 30.0% | |
| ! | CGTTTCTTTGGATTGATAAT+TGG | - | chr6_3:13021934-13021953 | None:intergenic | 30.0% |
| !! | CTTTGTTGGTTTGTATGTAT+TGG | - | chr6_3:13021977-13021996 | None:intergenic | 30.0% |
| ATCTATACGTTTGTCCAAAT+CGG | + | chr6_3:13022085-13022104 | Msa0940520:intron | 30.0% | |
| ! | TGATATTGACATTTTTCTGG+TGG | + | chr6_3:13022259-13022278 | Msa0940520:CDS | 30.0% |
| TTTGTCCATTATGATCTCAA+AGG | + | chr6_3:13022317-13022336 | Msa0940520:CDS | 30.0% | |
| !! | TATATGATGGCTAATGGATT+TGG | + | chr6_3:13022389-13022408 | Msa0940520:CDS | 30.0% |
| TCCAGATTATCAATCATCAT+CGG | - | chr6_3:13022790-13022809 | None:intergenic | 30.0% | |
| GCTATACACTTATCAAAAAG+AGG | - | chr6_3:13022820-13022839 | None:intergenic | 30.0% | |
| AAGTGTATAGCAATATGTAG+TGG | + | chr6_3:13022829-13022848 | Msa0940520:CDS | 30.0% | |
| AGTGTATAGCAATATGTAGT+GGG | + | chr6_3:13022830-13022849 | Msa0940520:CDS | 30.0% | |
| ! | AAAATTTTCCTTGACAGCTA+TGG | - | chr6_3:13023031-13023050 | None:intergenic | 30.0% |
| !!! | TACACGTTTTTTCGTTTTGA+AGG | - | chr6_3:13023080-13023099 | None:intergenic | 30.0% |
| !!! | TACACGTTTTTTCGTTTTGA+AGG | - | chr6_3:13023080-13023099 | None:intergenic | 30.0% |
| AAACAAACCGAATAAGCTTA+AGG | + | chr6_3:13023353-13023372 | Msa0940520:intron | 30.0% | |
| TTCAAATCATCCGAACTATT+TGG | - | chr6_3:13023575-13023594 | None:intergenic | 30.0% | |
| AAAAAGTAAAATCAGGGTAC+TGG | + | chr6_3:13023688-13023707 | Msa0940520:intron | 30.0% | |
| GATAGAATAACAATTGACGT+TGG | - | chr6_3:13023791-13023810 | None:intergenic | 30.0% | |
| ATTTCTTTCACTAATGTTCG+AGG | + | chr6_3:13023993-13024012 | Msa0940520:intron | 30.0% | |
| !! | GTTCTTCTTTTAAAAGACCA+CGG | - | chr6_3:13024046-13024065 | None:intergenic | 30.0% |
| !! | TGGTCTTTTAAAAGAAGAAC+AGG | + | chr6_3:13024046-13024065 | Msa0940520:intron | 30.0% |
| ! | ATGGATTAAGTTTGATGTGA+TGG | + | chr6_3:13024298-13024317 | Msa0940520:intron | 30.0% |
| GTGGAAAAAAAATGAAGAGA+TGG | + | chr6_3:13024349-13024368 | Msa0940520:intron | 30.0% | |
| AAAAAAATGAAGAGATGGGA+TGG | + | chr6_3:13024354-13024373 | Msa0940520:intron | 30.0% | |
| AAAAAATGAAGAGATGGGAT+GGG | + | chr6_3:13024355-13024374 | Msa0940520:intron | 30.0% | |
| CCCTAAAATACAAGAAAATG+AGG | - | chr6_3:13024465-13024484 | None:intergenic | 30.0% | |
| ACTAGCATAGATGTGATCAT+CGG | - | chr6_3:13022123-13022142 | None:intergenic | 35.0% | |
| !! | GTTGTCCTTTGAGATCATAA+TGG | - | chr6_3:13022325-13022344 | None:intergenic | 35.0% |
| ATCTCAAAGGACAACAATCT+TGG | + | chr6_3:13022330-13022349 | Msa0940520:CDS | 35.0% | |
| TCTCAAAGGACAACAATCTT+GGG | + | chr6_3:13022331-13022350 | Msa0940520:CDS | 35.0% | |
| AACGACTATATGATGGCTAA+TGG | + | chr6_3:13022383-13022402 | Msa0940520:CDS | 35.0% | |
| !! | ACATCTGTACCACTTTTCAA+GGG | - | chr6_3:13022422-13022441 | None:intergenic | 35.0% |
| !! | ACAAATGACACGTTGTTTTC+TGG | + | chr6_3:13022515-13022534 | Msa0940520:intron | 35.0% |
| ACTTCTACTTCTTTCAGGAT+GGG | - | chr6_3:13022677-13022696 | None:intergenic | 35.0% | |
| TACTTCTACTTCTTTCAGGA+TGG | - | chr6_3:13022678-13022697 | None:intergenic | 35.0% | |
| ATCCTGAAAGAAGTAGAAGT+AGG | + | chr6_3:13022677-13022696 | Msa0940520:CDS | 35.0% | |
| ! | TAGAACCCGACAAGTTTTTA+CGG | + | chr6_3:13022729-13022748 | Msa0940520:CDS | 35.0% |
| TCATTGCCGTAAAAACTTGT+CGG | - | chr6_3:13022738-13022757 | None:intergenic | 35.0% | |
| ! | TCCGATGATGATTGATAATC+TGG | + | chr6_3:13022786-13022805 | Msa0940520:CDS | 35.0% |
| !! | TATAGCAATATGTAGTGGGT+TGG | + | chr6_3:13022834-13022853 | Msa0940520:CDS | 35.0% |
| !! | ATAGCAATATGTAGTGGGTT+GGG | + | chr6_3:13022835-13022854 | Msa0940520:CDS | 35.0% |
| ! | GAAGCATACCTTTTCAAAAG+TGG | + | chr6_3:13022973-13022992 | Msa0940520:intron | 35.0% |
| AGCTTTACAAAACAGGAATG+GGG | - | chr6_3:13023002-13023021 | None:intergenic | 35.0% | |
| GAGCTTTACAAAACAGGAAT+GGG | - | chr6_3:13023003-13023022 | None:intergenic | 35.0% | |
| ! | AAGGAAAATTTTGCCAGGTT+GGG | + | chr6_3:13023039-13023058 | Msa0940520:intron | 35.0% |
| TGTTAGTCAGTCTCAATCAA+TGG | + | chr6_3:13023193-13023212 | Msa0940520:intron | 35.0% | |
| ACTTATCTCAACACGACATA+TGG | - | chr6_3:13023546-13023565 | None:intergenic | 35.0% | |
| !!! | GTTTTATGCCATTTTGGAGA+AGG | - | chr6_3:13023656-13023675 | None:intergenic | 35.0% |
| !! | TCAGGGTACTGGAAAAAAAA+TGG | + | chr6_3:13023699-13023718 | Msa0940520:intron | 35.0% |
| !! | ACAATTGACGTTGGTTTCTT+TGG | - | chr6_3:13023782-13023801 | None:intergenic | 35.0% |
| CTAACGTTCATGTTGACATT+TGG | - | chr6_3:13023813-13023832 | None:intergenic | 35.0% | |
| CAAATGTCAACATGAACGTT+AGG | + | chr6_3:13023811-13023830 | Msa0940520:intron | 35.0% | |
| ATAGGATAAACGCTAGTGAT+GGG | - | chr6_3:13023901-13023920 | None:intergenic | 35.0% | |
| AAAAATGAAGAGATGGGATG+GGG | + | chr6_3:13024356-13024375 | Msa0940520:intron | 35.0% | |
| !!! | TTTGTTCTGAGACTTGCTTT+TGG | + | chr6_3:13024864-13024883 | Msa0940520:intron | 35.0% |
| !!! | TGCTTTTGGTTGTTGTTTTC+AGG | + | chr6_3:13024878-13024897 | Msa0940520:intron | 35.0% |
| !!! | GCTTTTGGTTGTTGTTTTCA+GGG | + | chr6_3:13024879-13024898 | Msa0940520:intron | 35.0% |
| TAGTTAATAGGGTGGATAGG+TGG | - | chr6_3:13021823-13021842 | None:intergenic | 40.0% | |
| AGAATGGGTAGTTAATAGGG+TGG | - | chr6_3:13021831-13021850 | None:intergenic | 40.0% | |
| ! | ATTGGAAGCACAAGAACTTG+CGG | - | chr6_3:13021959-13021978 | None:intergenic | 40.0% |
| ! | TAAGTTTGGCTGACTTAGAC+TGG | + | chr6_3:13022231-13022250 | Msa0940520:CDS | 40.0% |
| ! | AAGTTTGGCTGACTTAGACT+GGG | + | chr6_3:13022232-13022251 | Msa0940520:CDS | 40.0% |
| GCTTGTGAACGACTATATGA+TGG | + | chr6_3:13022376-13022395 | Msa0940520:CDS | 40.0% | |
| !! | CACATCTGTACCACTTTTCA+AGG | - | chr6_3:13022423-13022442 | None:intergenic | 40.0% |
| TGAAAAGTGGTACAGATGTG+CGG | + | chr6_3:13022423-13022442 | Msa0940520:CDS | 40.0% | |
| GATGGGCATCTCTAAGTTTA+GGG | - | chr6_3:13022660-13022679 | None:intergenic | 40.0% | |
| GACCTACTTCTACTTCTTTC+AGG | - | chr6_3:13022682-13022701 | None:intergenic | 40.0% | |
| TAGCTGGTGAAGAAACTTCT+CGG | - | chr6_3:13022711-13022730 | None:intergenic | 40.0% | |
| CATTGCCGTAAAAACTTGTC+GGG | - | chr6_3:13022737-13022756 | None:intergenic | 40.0% | |
| ATGAATGTATTGCCCGTTGT+TGG | + | chr6_3:13022754-13022773 | Msa0940520:CDS | 40.0% | |
| TGGTAGACAACTTGACACTA+TGG | - | chr6_3:13022884-13022903 | None:intergenic | 40.0% | |
| !! | TGGGGAAACCACTTTTGAAA+AGG | - | chr6_3:13022984-13023003 | None:intergenic | 40.0% |
| CGAGCTTTACAAAACAGGAA+TGG | - | chr6_3:13023004-13023023 | None:intergenic | 40.0% | |
| ! | CTGTCAAGGAAAATTTTGCC+AGG | + | chr6_3:13023034-13023053 | Msa0940520:intron | 40.0% |
| ! | CAAGGAAAATTTTGCCAGGT+TGG | + | chr6_3:13023038-13023057 | Msa0940520:intron | 40.0% |
| ATGAAAAACTGTTCCCAACC+TGG | - | chr6_3:13023055-13023074 | None:intergenic | 40.0% | |
| ! | TAATATACCTGCTGCTGACT+GGG | - | chr6_3:13023320-13023339 | None:intergenic | 40.0% |
| TTAATATACCTGCTGCTGAC+TGG | - | chr6_3:13023321-13023340 | None:intergenic | 40.0% | |
| !!! | ACACCTCAGATCTTGTTTTC+TGG | + | chr6_3:13023467-13023486 | Msa0940520:intron | 40.0% |
| !!! | CACCTCAGATCTTGTTTTCT+GGG | + | chr6_3:13023468-13023487 | Msa0940520:intron | 40.0% |
| ACACGACATATGGAAAAGAG+TGG | - | chr6_3:13023536-13023555 | None:intergenic | 40.0% | |
| TTATGTTTAAAGGTCCAGCC+AGG | + | chr6_3:13023628-13023647 | Msa0940520:intron | 40.0% | |
| CATAGGATAAACGCTAGTGA+TGG | - | chr6_3:13023902-13023921 | None:intergenic | 40.0% | |
| AAGAAGAACAGGATGCAAGT+AGG | + | chr6_3:13024057-13024076 | Msa0940520:intron | 40.0% | |
| AAAATGAAGAGATGGGATGG+GGG | + | chr6_3:13024357-13024376 | Msa0940520:intron | 40.0% | |
| ! | TGGTTGTTTCGTCTATGTGT+GGG | - | chr6_3:13024561-13024580 | None:intergenic | 40.0% |
| ! | TTGGTTGTTTCGTCTATGTG+TGG | - | chr6_3:13024562-13024581 | None:intergenic | 40.0% |
| TTTCAGGGATATCTTAGTGC+TGG | + | chr6_3:13024894-13024913 | Msa0940520:intron | 40.0% | |
| ACAATGCAGATGAAACTCCA+AGG | + | chr6_3:13024955-13024974 | Msa0940520:CDS | 40.0% | |
| CAATGCAGATGAAACTCCAA+GGG | + | chr6_3:13024956-13024975 | Msa0940520:CDS | 40.0% | |
| GGGTAGTTAATAGGGTGGAT+AGG | - | chr6_3:13021826-13021845 | None:intergenic | 45.0% | |
| ! | TTGGAAGCACAAGAACTTGC+GGG | - | chr6_3:13021958-13021977 | None:intergenic | 45.0% |
| ! | ATCGAAATGGCTAGAGCATC+AGG | + | chr6_3:13022006-13022025 | Msa0940520:CDS | 45.0% |
| GGTCATCTTCCCTTGAAAAG+TGG | + | chr6_3:13022410-13022429 | Msa0940520:CDS | 45.0% | |
| GAAAAGTGGTACAGATGTGC+GGG | + | chr6_3:13022424-13022443 | Msa0940520:CDS | 45.0% | |
| !! | ACGTGTCATTTGTGCCATGA+AGG | - | chr6_3:13022508-13022527 | None:intergenic | 45.0% |
| ! | TCTTTTAAGCTCCGGACAAC+TGG | + | chr6_3:13022572-13022591 | Msa0940520:intron | 45.0% |
| GGATGGGCATCTCTAAGTTT+AGG | - | chr6_3:13022661-13022680 | None:intergenic | 45.0% | |
| AGCTGGTGAAGAAACTTCTC+GGG | - | chr6_3:13022710-13022729 | None:intergenic | 45.0% | |
| ! | AAAACTTGTCGGGTTCTAGC+TGG | - | chr6_3:13022727-13022746 | None:intergenic | 45.0% |
| TCAATCATCATCGGAGTCTG+AGG | - | chr6_3:13022781-13022800 | None:intergenic | 45.0% | |
| ! | TGGGTTGGGACATAATTCGA+GGG | + | chr6_3:13022849-13022868 | Msa0940520:CDS | 45.0% |
| ! | GTCAAGTTGTCTACCATCCT+CGG | + | chr6_3:13022888-13022907 | Msa0940520:intron | 45.0% |
| GATAAATTAAACCCCAGCCG+AGG | - | chr6_3:13022908-13022927 | None:intergenic | 45.0% | |
| GTGCACGAGCTTTACAAAAC+AGG | - | chr6_3:13023009-13023028 | None:intergenic | 45.0% | |
| TGCCCAGAAAACAAGATCTG+AGG | - | chr6_3:13023473-13023492 | None:intergenic | 45.0% | |
| ! | AGGGTTAGGATAAATGGGCT+TGG | + | chr6_3:13024481-13024500 | Msa0940520:intron | 45.0% |
| ! | GGGTTAGGATAAATGGGCTT+GGG | + | chr6_3:13024482-13024501 | Msa0940520:intron | 45.0% |
| AGAGGAAGAGAGGAAGAGAT+TGG | + | chr6_3:13024925-13024944 | Msa0940520:CDS | 45.0% | |
| GAGGAAGAGAGGAAGAGATT+GGG | + | chr6_3:13024926-13024945 | Msa0940520:CDS | 45.0% | |
| AGGAAGAGAGGAAGAGATTG+GGG | + | chr6_3:13024927-13024946 | Msa0940520:CDS | 45.0% | |
| !! | ATATAAAAAAATGTAAATTA+GGG | + | chr6_3:13023746-13023765 | Msa0940520:intron | 5.0% |
| GAACTTGCGGGTCGTTTCTT+TGG | - | chr6_3:13021946-13021965 | None:intergenic | 50.0% | |
| GGCTAAGACTCAGTCCGATT+TGG | - | chr6_3:13022102-13022121 | None:intergenic | 50.0% | |
| TGCTTAAAAGAGTCGCGCGA+AGG | + | chr6_3:13022285-13022304 | Msa0940520:CDS | 50.0% | |
| !! | GTGGGTTGGGACATAATTCG+AGG | + | chr6_3:13022848-13022867 | Msa0940520:CDS | 50.0% |
| AATTAAACCCCAGCCGAGGA+TGG | - | chr6_3:13022904-13022923 | None:intergenic | 50.0% | |
| ! | TGACTGGGCATCTCTGAAAG+AGG | - | chr6_3:13023305-13023324 | None:intergenic | 50.0% |
| !! | TTTTGGAGAAGGTTCCTGGC+TGG | - | chr6_3:13023645-13023664 | None:intergenic | 50.0% |
| GCCAGGAACCTTCTCCAAAA+TGG | + | chr6_3:13023645-13023664 | Msa0940520:intron | 50.0% | |
| !! | GCCATTTTGGAGAAGGTTCC+TGG | - | chr6_3:13023649-13023668 | None:intergenic | 50.0% |
| GGAGACCTCAATTCTACCGT+CGG | - | chr6_3:13024444-13024463 | None:intergenic | 50.0% | |
| !! | TTAGTGCTGGTGTTGCTGAG+AGG | + | chr6_3:13024907-13024926 | Msa0940520:CDS | 50.0% |
| GGAAGAGAGGAAGAGATTGG+GGG | + | chr6_3:13024928-13024947 | Msa0940520:CDS | 50.0% | |
| GAAGAGAGGAAGAGATTGGG+GGG | + | chr6_3:13024929-13024948 | Msa0940520:CDS | 50.0% | |
| AAGAGAGGAAGAGATTGGGG+GGG | + | chr6_3:13024930-13024949 | Msa0940520:CDS | 50.0% | |
| TAGTCATCAACAGGGTCCCT+TGG | - | chr6_3:13024975-13024994 | None:intergenic | 50.0% | |
| TTAAGCTCCGGACAACTGGC+CGG | + | chr6_3:13022576-13022595 | Msa0940520:intron | 55.0% | |
| TTCGTGTCTGCAGCCTTCAC+CGG | - | chr6_3:13022598-13022617 | None:intergenic | 55.0% | |
| GGAGTCTGAGGACCAACAAC+GGG | - | chr6_3:13022769-13022788 | None:intergenic | 55.0% | |
| CGGAGTCTGAGGACCAACAA+CGG | - | chr6_3:13022770-13022789 | None:intergenic | 55.0% | |
| AGTTGTCTACCATCCTCGGC+TGG | + | chr6_3:13022892-13022911 | Msa0940520:intron | 55.0% | |
| GTTGTCTACCATCCTCGGCT+GGG | + | chr6_3:13022893-13022912 | Msa0940520:intron | 55.0% | |
| TTGTCTACCATCCTCGGCTG+GGG | + | chr6_3:13022894-13022913 | Msa0940520:intron | 55.0% | |
| CTCGTGCACCATAGCTGTCA+AGG | + | chr6_3:13023020-13023039 | Msa0940520:intron | 55.0% | |
| AATTCTACCGTCGGTGGTCG+TGG | - | chr6_3:13024435-13024454 | None:intergenic | 55.0% | |
| GACCACCGACGGTAGAATTG+AGG | + | chr6_3:13024436-13024455 | Msa0940520:intron | 55.0% | |
| GACCTCAATTCTACCGTCGG+TGG | - | chr6_3:13024441-13024460 | None:intergenic | 55.0% | |
| !! | GGTGTTGCTGAGAGGAAGAG+AGG | + | chr6_3:13024915-13024934 | Msa0940520:CDS | 55.0% |
| GTGGTACAGATGTGCGGGAC+AGG | + | chr6_3:13022429-13022448 | Msa0940520:CDS | 60.0% | |
| AGAGATGCCCAGTCAGCAGC+AGG | + | chr6_3:13023310-13023329 | Msa0940520:intron | 60.0% | |
| AGATGAGCCACGACCACCGA+CGG | + | chr6_3:13024425-13024444 | Msa0940520:intron | 60.0% | |
| TCCGGACAACTGGCCGGTGA+AGG | + | chr6_3:13022582-13022601 | Msa0940520:intron | 65.0% | |
| GCCTTCACCGGCCAGTTGTC+CGG | - | chr6_3:13022586-13022605 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 13021763 | 13024995 | 13021763 | ID=Msa0940520;Name=Msa0940520 |
| chr6_3 | mRNA | 13021763 | 13024995 | 13021763 | ID=Msa0940520-mRNA-1;Parent=Msa0940520;Name=Msa0940520-mRNA-1;_AED=0.22;_eAED=0.48;_QI=150|0.33|0.5|0.75|1|1|4|0|251 |
| chr6_3 | exon | 13021763 | 13022047 | 13021763 | ID=Msa0940520-mRNA-1:exon:4242;Parent=Msa0940520-mRNA-1 |
| chr6_3 | exon | 13022224 | 13022481 | 13022224 | ID=Msa0940520-mRNA-1:exon:4243;Parent=Msa0940520-mRNA-1 |
| chr6_3 | exon | 13022604 | 13022870 | 13022604 | ID=Msa0940520-mRNA-1:exon:4244;Parent=Msa0940520-mRNA-1 |
| chr6_3 | exon | 13024900 | 13024995 | 13024900 | ID=Msa0940520-mRNA-1:exon:4245;Parent=Msa0940520-mRNA-1 |
| chr6_3 | five_prime_UTR | 13021763 | 13021912 | 13021763 | ID=Msa0940520-mRNA-1:five_prime_utr;Parent=Msa0940520-mRNA-1 |
| chr6_3 | CDS | 13021913 | 13022047 | 13021913 | ID=Msa0940520-mRNA-1:cds;Parent=Msa0940520-mRNA-1 |
| chr6_3 | CDS | 13022224 | 13022481 | 13022224 | ID=Msa0940520-mRNA-1:cds;Parent=Msa0940520-mRNA-1 |
| chr6_3 | CDS | 13022604 | 13022870 | 13022604 | ID=Msa0940520-mRNA-1:cds;Parent=Msa0940520-mRNA-1 |
| chr6_3 | CDS | 13024900 | 13024995 | 13024900 | ID=Msa0940520-mRNA-1:cds;Parent=Msa0940520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
