AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259210 MtrunA17_Chr2g0325361 61.378 624 192 5 5 594 469 1077 0.0 620
Msa0259210 MtrunA17_Chr2g0325361 45.961 359 169 2 1 334 349 707 1.14e-65 232
Msa0259210 MtrunA17_Chr2g0325361 39.706 408 188 6 2 356 252 654 1.44e-49 185
Msa0259210 MtrunA17_Chr2g0325361 42.966 263 115 1 2 229 550 812 4.76e-40 157
Msa0259210 MtrunA17_Chr2g0325361 32.627 236 120 4 111 325 239 456 1.07e-15 80.9
Msa0259210 MtrunA17_Chr2g0325661 56.129 620 231 5 9 594 264 876 0.0 562
Msa0259210 MtrunA17_Chr2g0325661 45.249 221 86 3 2 208 397 596 4.67e-27 116
Msa0259210 MtrunA17_Chr2g0325661 35.821 201 107 4 169 355 224 416 6.65e-13 72.0
Msa0259210 MtrunA17_Chr6g0471251 50.891 617 255 8 15 594 162 767 2.75e-165 490
Msa0259210 MtrunA17_Chr6g0471251 40.909 220 102 2 2 207 281 486 1.62e-22 102
Msa0259210 MtrunA17_Chr2g0325641 81.928 332 25 3 14 331 1 311 2.14e-164 471
Msa0259210 MtrunA17_Chr2g0325641 41.063 207 80 3 1 165 100 306 1.76e-26 110
Msa0259210 MtrunA17_Chr2g0325641 39.869 153 71 2 1 153 177 308 1.29e-14 75.5
Msa0259210 MtrunA17_Chr2g0325611 56.746 504 176 6 127 595 95 591 1.22e-163 479
Msa0259210 MtrunA17_Chr2g0325611 37.745 204 104 4 44 235 117 309 1.42e-21 99.0
Msa0259210 MtrunA17_Chr2g0325611 41.579 190 88 3 19 208 144 310 2.23e-21 98.2
Msa0259210 MtrunA17_Chr2g0325611 38.333 180 102 2 1 180 140 310 1.03e-16 83.6
Msa0259210 MtrunA17_Chr2g0325611 40.496 121 72 0 8 128 208 328 1.18e-13 73.9
Msa0259210 MtrunA17_Chr2g0325611 35.119 168 74 3 2 162 181 320 9.77e-11 64.7
Msa0259210 MtrunA17_Chr2g0325351 54.713 541 219 8 77 595 153 689 2.26e-158 469
Msa0259210 MtrunA17_Chr2g0325351 42.211 199 91 4 4 202 229 403 7.34e-20 94.0
Msa0259210 MtrunA17_Chr2g0325351 39.153 189 90 2 2 179 241 415 1.54e-16 83.2
Msa0259210 MtrunA17_Chr2g0325631 90.566 265 19 1 336 594 1 265 3.08e-155 446
Msa0259210 MtrunA17_Chr2g0325231 52.197 569 186 7 2 504 334 882 1.43e-154 466
Msa0259210 MtrunA17_Chr2g0325231 42.136 337 155 5 43 340 204 539 2.04e-42 163
Msa0259210 MtrunA17_Chr2g0325231 41.743 218 117 1 1 208 484 701 4.12e-30 126
Msa0259210 MtrunA17_Chr2g0325231 31.935 310 142 7 87 327 140 449 7.27e-17 84.7
Msa0259210 MtrunA17_Chr2g0325621 52.941 544 200 8 77 594 147 660 8.82e-148 441
Msa0259210 MtrunA17_Chr2g0325621 33.951 162 91 2 3 150 266 425 1.57e-11 67.4
Msa0259210 MtrunA17_Chr2g0325321 58.921 482 163 3 14 495 310 756 9.73e-144 434
Msa0259210 MtrunA17_Chr2g0325321 41.781 292 142 2 2 265 312 603 1.97e-41 160
Msa0259210 MtrunA17_Chr2g0325321 46.725 229 122 0 1 229 367 595 2.86e-40 156
Msa0259210 MtrunA17_Chr2g0325321 33.080 263 144 4 86 334 197 441 7.86e-14 74.7
Msa0259210 MtrunA17_Chr2g0325811 49.149 529 247 4 82 593 307 830 5.85e-139 424
Msa0259210 MtrunA17_Chr2g0325811 33.745 243 123 3 13 217 336 578 1.20e-21 99.8
Msa0259210 MtrunA17_Chr2g0325711 46.630 549 245 4 75 575 270 818 6.67e-138 421
Msa0259210 MtrunA17_Chr2g0325711 36.232 207 128 1 2 208 351 553 5.95e-25 110
Msa0259210 MtrunA17_Chr2g0325711 30.108 279 143 4 101 334 167 438 6.53e-16 81.6
Msa0259210 MtrunA17_Chr5g0434761 75.564 266 59 1 336 595 1 266 6.27e-137 399
Msa0259210 MtrunA17_Chr2g0280141 46.886 578 286 8 27 594 251 817 1.53e-134 412
Msa0259210 MtrunA17_Chr2g0325861 45.102 541 258 6 2 513 311 841 2.58e-112 355
Msa0259210 MtrunA17_Chr2g0325861 39.329 328 174 3 16 336 259 568 1.85e-36 145
Msa0259210 MtrunA17_Chr2g0325861 36.704 267 152 2 82 338 269 528 3.73e-23 104
Msa0259210 MtrunA17_Chr5g0434751 67.029 276 63 2 84 331 1 276 9.21e-97 297
Msa0259210 MtrunA17_Chr5g0434751 41.985 262 117 4 2 228 3 264 2.21e-29 118
Msa0259210 MtrunA17_Chr2g0325701 47.241 453 201 9 69 495 147 587 1.56e-96 307
Msa0259210 MtrunA17_Chr2g0325701 36.863 255 132 5 8 234 158 411 2.82e-24 107
Msa0259210 MtrunA17_Chr2g0325701 38.272 162 86 1 2 149 249 410 1.99e-15 79.7
Msa0259210 MtrunA17_Chr5g0416271 48.295 352 132 4 166 495 157 480 1.57e-84 272
Msa0259210 MtrunA17_Chr5g0416271 41.919 198 71 4 13 181 145 327 4.66e-23 102
Msa0259210 MtrunA17_Chr2g0325691 47.692 390 137 6 2 325 322 710 9.34e-75 253
Msa0259210 MtrunA17_Chr2g0325691 43.085 376 147 6 2 325 294 654 1.31e-52 192
Msa0259210 MtrunA17_Chr2g0325691 38.835 412 167 7 1 328 219 629 2.61e-47 177
Msa0259210 MtrunA17_Chr2g0325691 46.416 293 141 5 39 328 207 486 1.58e-41 160
Msa0259210 MtrunA17_Chr2g0325691 37.681 345 154 10 8 325 146 456 2.06e-28 120
Msa0259210 MtrunA17_Chr2g0325691 42.925 212 93 1 2 213 534 717 5.70e-26 113
Msa0259210 MtrunA17_Chr2g0333341 42.786 402 175 7 136 537 276 622 3.52e-72 243
Msa0259210 MtrunA17_Chr2g0333341 43.429 175 78 5 15 188 295 449 1.67e-18 89.4
Msa0259210 MtrunA17_Chr2g0325331 72.903 155 42 0 336 490 1 155 6.10e-66 213
Msa0259210 MtrunA17_Chr2g0325281 49.235 327 131 3 5 331 301 592 5.72e-65 224
Msa0259210 MtrunA17_Chr2g0325281 40.728 302 116 3 82 334 252 539 2.58e-42 161
Msa0259210 MtrunA17_Chr2g0325281 33.460 263 143 4 86 334 197 441 8.46e-21 96.7
Msa0259210 MtrunA17_Chr2g0325281 42.222 135 64 1 2 136 466 586 5.48e-15 78.2
Msa0259210 MtrunA17_Chr2g0332961 44.000 375 145 9 103 470 37 353 8.35e-64 213
Msa0259210 MtrunA17_Chr2g0325761 47.041 338 151 4 9 325 259 589 2.50e-62 218
Msa0259210 MtrunA17_Chr2g0325761 41.304 276 113 3 2 235 322 590 2.09e-36 144
Msa0259210 MtrunA17_Chr2g0325761 45.815 227 88 3 2 214 392 597 1.63e-33 135
Msa0259210 MtrunA17_Chr2g0325761 59.000 100 39 2 491 590 592 689 1.85e-25 111
Msa0259210 MtrunA17_Chr2g0325761 30.744 309 133 4 107 334 220 528 4.83e-19 91.3
Msa0259210 MtrunA17_Chr2g0325761 32.768 177 91 1 3 179 456 604 4.47e-12 68.9
Msa0259210 MtrunA17_Chr2g0325291 57.143 203 81 1 353 549 4 206 7.68e-61 201
Msa0259210 MtrunA17_Chr2g0332951 48.980 245 80 7 255 495 2 205 1.92e-54 184
Msa0259210 MtrunA17_Chr2g0325771 65.680 169 48 2 329 495 10 170 1.31e-51 175
Msa0259210 MtrunA17_Chr2g0325241 40.122 329 164 3 92 417 121 419 2.87e-51 182
Msa0259210 MtrunA17_Chr2g0325241 37.500 208 127 1 8 212 121 328 4.30e-23 102
Msa0259210 MtrunA17_Chr2g0325241 39.521 167 98 1 1 164 142 308 5.91e-18 86.7
Msa0259210 MtrunA17_Chr2g0325311 73.684 114 26 1 482 595 11 120 1.88e-48 164
Msa0259210 MtrunA17_Chr2g0325271 73.737 99 26 0 496 594 45 143 3.52e-42 148
Msa0259210 MtrunA17_Chr8g0361651 36.896 393 203 10 216 595 50 410 1.59e-40 154
Msa0259210 MtrunA17_Chr3g0140591 54.321 162 73 1 334 495 7 167 6.75e-40 143
Msa0259210 MtrunA17_Chr2g0325221 37.942 311 179 2 29 325 275 585 2.89e-39 153
Msa0259210 MtrunA17_Chr2g0325221 38.567 293 169 3 9 301 308 589 5.33e-31 128
Msa0259210 MtrunA17_Chr2g0325221 37.597 258 150 2 16 262 343 600 1.75e-28 120
Msa0259210 MtrunA17_Chr2g0325221 60.204 98 38 1 496 593 603 699 2.25e-26 114
Msa0259210 MtrunA17_Chr2g0325221 38.914 221 117 4 1 207 370 586 1.36e-24 108
Msa0259210 MtrunA17_Chr2g0325221 35.470 234 140 2 103 325 272 505 2.40e-17 85.9
Msa0259210 MtrunA17_Chr2g0325221 37.281 228 129 4 107 325 269 491 3.62e-17 85.5
Msa0259210 MtrunA17_Chr7g0235901 51.515 198 79 2 53 250 131 311 3.89e-35 134
Msa0259210 MtrunA17_Chr7g0235901 46.409 181 86 2 103 279 132 305 8.05e-26 108
Msa0259210 MtrunA17_Chr7g0235901 40.909 198 99 2 1 194 128 311 1.29e-23 101
Msa0259210 MtrunA17_Chr7g0235901 37.968 187 105 2 145 327 132 311 4.92e-19 88.2
Msa0259210 MtrunA17_Chr7g0235901 40.994 161 78 5 179 327 100 255 3.47e-13 70.9
Msa0259210 MtrunA17_Chr2g0325651 56.494 154 43 2 2 134 238 388 4.69e-35 136
Msa0259210 MtrunA17_Chr2g0325651 39.113 248 135 5 33 265 140 386 9.89e-25 106
Msa0259210 MtrunA17_Chr2g0325651 37.302 252 131 4 3 230 138 386 8.29e-23 100
Msa0259210 MtrunA17_Chr2g0325651 39.779 181 85 3 1 174 223 386 3.58e-20 92.8
Msa0259210 MtrunA17_Chr2g0325651 38.462 143 74 2 196 331 236 371 4.74e-13 71.2
Msa0259210 MtrunA17_Chr4g0024061 38.645 251 111 5 353 589 427 648 2.22e-34 139
Msa0259210 MtrunA17_Chr2g0325721 44.082 245 116 2 33 277 278 501 3.12e-30 124
Msa0259210 MtrunA17_Chr2g0325721 38.596 228 112 1 1 200 274 501 2.14e-23 103
Msa0259210 MtrunA17_Chr2g0325721 39.130 276 143 4 38 305 243 501 6.06e-23 102
Msa0259210 MtrunA17_Chr2g0325721 36.975 238 141 2 108 338 243 478 2.02e-16 82.4
Msa0259210 MtrunA17_Chr2g0325721 34.884 215 122 3 142 342 251 461 1.80e-12 70.1
Msa0259210 MtrunA17_Chr4g0044221 31.746 315 172 8 130 431 6 290 1.12e-24 105
Msa0259210 MtrunA17_Chr2g0325751 48.649 148 56 4 192 338 3 131 2.21e-24 99.8
Msa0259210 MtrunA17_Chr2g0325751 38.636 132 74 1 79 210 2 126 2.50e-14 70.9
Msa0259210 MtrunA17_Chr2g0325751 42.017 119 62 1 110 228 5 116 9.35e-14 69.3
Msa0259210 MtrunA17_Chr2g0325751 42.742 124 57 2 136 259 3 112 1.25e-12 65.9
Msa0259210 MtrunA17_Chr2g0325751 39.316 117 64 1 42 158 7 116 2.64e-12 65.1
Msa0259210 MtrunA17_Chr2g0325751 38.261 115 64 1 14 128 7 114 2.19e-11 62.4
Msa0259210 MtrunA17_Chr7g0235921 67.010 97 25 2 414 504 1 96 1.03e-19 84.7
Msa0259210 MtrunA17_Chr2g0325261 49.091 110 52 1 115 224 201 306 1.09e-17 84.3
Msa0259210 MtrunA17_Chr2g0325261 52.500 80 38 0 5 84 227 306 2.71e-12 68.2
Msa0259210 MtrunA17_Chr2g0325341 49.091 110 52 1 115 224 201 306 1.09e-17 84.3
Msa0259210 MtrunA17_Chr2g0325341 52.500 80 38 0 5 84 227 306 2.71e-12 68.2
Msa0259210 MtrunA17_Chr2g0325211 38.202 178 98 2 149 326 2 167 1.70e-16 78.2
Msa0259210 MtrunA17_Chr2g0325791 39.355 155 82 3 43 193 24 170 4.64e-16 79.7
Msa0259210 MtrunA17_Chr2g0325791 41.791 134 68 1 1 134 37 160 1.78e-15 77.8
Msa0259210 MtrunA17_Chr2g0325791 37.681 138 61 3 145 278 41 157 1.42e-14 75.1
Msa0259210 MtrunA17_Chr2g0325791 38.583 127 73 2 85 207 24 149 2.07e-13 71.6
Msa0259210 MtrunA17_Chr2g0325791 39.552 134 76 2 99 228 24 156 2.42e-11 65.5
Msa0259210 MtrunA17_Chr2g0325791 36.242 149 78 3 72 220 38 169 4.90e-11 64.3
Msa0259210 MtrunA17_Chr2g0325781 48.598 107 50 2 43 145 197 302 2.54e-15 77.0
Msa0259210 MtrunA17_Chr2g0325781 51.685 89 39 1 103 187 214 302 2.63e-14 74.3
Msa0259210 MtrunA17_Chr5g0434741 37.037 189 94 5 32 213 125 295 4.87e-12 67.4
Msa0259210 MtrunA17_Chr2g0325731 58.929 56 23 0 84 139 1 56 1.27e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259210 AT5G27220.1 26.824 466 298 14 34 494 373 800 1.65e-11 68.2
Msa0259210 AT5G27220.3 26.824 466 298 14 34 494 373 800 1.65e-11 68.2
Msa0259210 AT5G27220.4 26.824 466 298 14 34 494 373 800 2.08e-11 67.8
Msa0259210 AT5G27220.2 26.824 466 298 14 34 494 373 800 2.08e-11 67.8

Find 101 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAGTTATCTTTATTTCT+TGG 0.198475 2_2:-56097965 Msa0259210:three_prime_UTR
GCCATCAAGTTGCTTCTCTT+TGG 0.237832 2_2:+56101271 None:intergenic
CACAAATCAGTCGGGCATTC+TGG 0.239397 2_2:+56098435 None:intergenic
GAAAATTCTTTGGCTGTTCT+TGG 0.258100 2_2:-56099197 Msa0259210:CDS
CGTGGAGCTGTTTGGAAGCC+TGG 0.258716 2_2:-56099078 Msa0259210:CDS
AGAAAATACTGAAAATTCTT+TGG 0.265178 2_2:-56099207 Msa0259210:CDS
TCAAAAGATAACAAACTTAT+AGG 0.279836 2_2:-56101146 Msa0259210:CDS
AGATCCATCAAAATTTGTTT+TGG 0.283657 2_2:-56099402 Msa0259210:CDS
AACTTGTAACTACTATTGTT+TGG 0.296252 2_2:-56098077 Msa0259210:three_prime_UTR
TGGACTCAAGCTCCTTCATT+TGG 0.314622 2_2:+56101459 None:intergenic
TTGACTCAAGCTCCTTCATT+TGG 0.318173 2_2:+56101039 None:intergenic
TCAATACCTGCTCCTCCATT+TGG 0.333415 2_2:+56101501 None:intergenic
TTGACTCTAATTCCTTCAAT+TGG 0.338034 2_2:+56101165 None:intergenic
AAAATTTGATGGACAAATAA+AGG 0.345294 2_2:-56100778 Msa0259210:CDS
GTCTTCAAGTTGCTTCGCTT+TGG 0.345541 2_2:+56101439 None:intergenic
ATTTGAGGATCTGCTTCTTA+AGG 0.354835 2_2:-56098199 Msa0259210:CDS
TTACCCCGTTTCTTTGCATT+AGG 0.361827 2_2:+56098112 None:intergenic
GTTGTTGTAGCAGATAGATT+TGG 0.368863 2_2:+56099312 None:intergenic
GACTGTCCTACAATGCATTT+CGG 0.382566 2_2:-56098235 Msa0259210:CDS
ACTTGTAACTACTATTGTTT+GGG 0.393650 2_2:-56098076 Msa0259210:three_prime_UTR
AAGAAGAACCTTGATTTCAA+TGG 0.397469 2_2:+56098388 None:intergenic
ACAACCTAATGCAAAGAAAC+GGG 0.400707 2_2:-56098116 Msa0259210:three_prime_UTR
TTGAGTCAAGCTCCCTCATT+CGG 0.403790 2_2:+56101669 None:intergenic
GCTATTGAAAGGACAACTTC+AGG 0.410723 2_2:-56101303 Msa0259210:CDS
CGTTATTCCACTGTGTCAAA+AGG 0.410783 2_2:-56099363 Msa0259210:CDS
TTGATTCATGCTCCTGCAAT+CGG 0.412660 2_2:+56101417 None:intergenic
TCCAAAGAGAAGCAACTTGA+TGG 0.413296 2_2:-56101272 Msa0259210:CDS
GAAATTTCCGTGGAGCTGTT+TGG 0.418240 2_2:-56099086 Msa0259210:CDS
TGTAATCCGAAATGCATTGT+AGG 0.425499 2_2:+56098229 None:intergenic
GAAGCTAGAGCATGATTTGA+AGG 0.429517 2_2:-56099240 Msa0259210:CDS
ACTAGCAATTTCTTCATCTC+TGG 0.433462 2_2:+56098263 None:intergenic
GTTGTTTGAAATACAAGTTA+AGG 0.433928 2_2:-56101597 Msa0259210:CDS
AACAACCTAATGCAAAGAAA+CGG 0.436437 2_2:-56098117 Msa0259210:three_prime_UTR
TTAAAAGAAAAGCAGTTTGA+AGG 0.444691 2_2:-56100831 Msa0259210:CDS
AACCTTGATTTCAATGGAGT+TGG 0.448151 2_2:+56098394 None:intergenic
GCAACTTGAAGACCGATTGC+AGG 0.449322 2_2:-56101429 Msa0259210:CDS
ATTCAGTTGTGCATATAACT+TGG 0.456342 2_2:-56098498 Msa0259210:CDS
GAAGTTTGAAACAAAAGAAA+AGG 0.466885 2_2:-56101114 Msa0259210:CDS
AACCAACTCCATTGAAATCA+AGG 0.469309 2_2:-56098396 Msa0259210:intron
GGAATTTGAATGTCAAATGA+TGG 0.469309 2_2:-56101093 Msa0259210:CDS
TTGATTTGAAGTCCTCAACT+TGG 0.471069 2_2:+56100934 None:intergenic
CTTGAGCTAAAAGCACATAA+AGG 0.471481 2_2:-56098159 Msa0259210:CDS
GGAATTTGAAGGCCAATTGA+AGG 0.477761 2_2:-56101177 Msa0259210:CDS
AATGCAAAGAAACGGGGTAA+TGG 0.480139 2_2:-56098109 Msa0259210:three_prime_UTR
AGAGTATAAGTTCAAAGTAA+AGG 0.481240 2_2:-56100868 Msa0259210:CDS
GTGGAGCTGTTTGGAAGCCT+GGG 0.486544 2_2:-56099077 Msa0259210:CDS
TAAAAGACGATGGAATGAAC+TGG 0.489273 2_2:-56100898 Msa0259210:CDS
CCATCACTTGTCTTTCAAAG+TGG 0.490789 2_2:+56101219 None:intergenic
TTGGACACAAGTGAGAAAAC+TGG 0.495029 2_2:-56099476 Msa0259210:CDS
GGATTACAAACTAGAATTTG+AGG 0.497268 2_2:-56098214 Msa0259210:CDS
AACTGCTCTCACAAATCAGT+CGG 0.510269 2_2:+56098426 None:intergenic
TGAATGCCAAATGGAGGAGC+AGG 0.517572 2_2:-56101507 Msa0259210:CDS
CGATTAAGTCGTACCATTGG+TGG 0.522182 2_2:-56099512 Msa0259210:CDS
GGAGTTTGAATCAAAAGAGA+GGG 0.527207 2_2:-56101534 Msa0259210:CDS
TCAAAAGAGAGAAAGTTTGA+AGG 0.531967 2_2:-56101650 Msa0259210:CDS
CCACTTTGAAAGACAAGTGA+TGG 0.536748 2_2:-56101219 Msa0259210:CDS
CCAACTTGTAGGCAAAATGA+AGG 0.536838 2_2:-56101555 Msa0259210:CDS
GGAATTTGAAGAACAAGTGA+AGG 0.541780 2_2:-56101009 Msa0259210:CDS
TGAAGCTCGAGCGAAGGAGC+TGG 0.541954 2_2:-56101381 Msa0259210:CDS
GAGGGGATTTGAATGCCAAA+TGG 0.542544 2_2:-56101516 Msa0259210:CDS
TGGTGGAACAAGTTTGCAGT+TGG 0.544547 2_2:-56099495 Msa0259210:CDS
TGAAGGTCAAGTGAAGGAGC+AGG 0.546239 2_2:-56101633 Msa0259210:CDS
ATATGCAGTTGAATCTTACA+TGG 0.546667 2_2:-56099540 Msa0259210:intron
TAGATTCCAACTCCTTCACT+TGG 0.549470 2_2:+56101249 None:intergenic
GTTATTCCACTGTGTCAAAA+GGG 0.553830 2_2:-56099362 Msa0259210:CDS
ACTGCTCTCACAAATCAGTC+GGG 0.558430 2_2:+56098427 None:intergenic
AGTGAAGGACATTAAATCAA+AGG 0.559641 2_2:-56100994 Msa0259210:CDS
TAAGTTCAAAGTAAAGGTGA+AGG 0.565515 2_2:-56100862 Msa0259210:CDS
AGGAGTTTGAATCAAAAGAG+AGG 0.566430 2_2:-56101535 Msa0259210:CDS
CTGCAAACTTGTTCCACCAA+TGG 0.566622 2_2:+56099499 None:intergenic
TGATGGCCAAGTGAAGGAGT+TGG 0.567033 2_2:-56101255 Msa0259210:CDS
GCGTGTTGAAAACCAAATGA+AGG 0.568140 2_2:-56101051 Msa0259210:CDS
GCATTGTGAAAGCCAAATGA+AGG 0.570742 2_2:-56101471 Msa0259210:CDS
TGCTATGCACGAAATTTCCG+TGG 0.572144 2_2:-56099096 Msa0259210:CDS
GGACATTAAATCAAAGGAGG+AGG 0.572694 2_2:-56100988 Msa0259210:CDS
GGAATTTGAAGCTCGAGCGA+AGG 0.575237 2_2:-56101387 Msa0259210:CDS
TCAAAATTGAGGCTATTGAA+AGG 0.578553 2_2:-56101314 Msa0259210:CDS
GATCGATTAAGTCGTACCAT+TGG 0.583636 2_2:-56099515 Msa0259210:CDS
GAAGCATTTCGAAAGCATGA+TGG 0.585317 2_2:-56101348 Msa0259210:CDS
TTGTTAAGCATCTTATCAAG+AGG 0.585772 2_2:-56098544 Msa0259210:intron
GGAGCATGAATCAAAGGAGA+AGG 0.587429 2_2:-56101408 Msa0259210:CDS
AGGAGCTCAAATCAAAATTG+AGG 0.589256 2_2:-56101325 Msa0259210:CDS
GGACTTGGTATCAAAACTGA+AGG 0.589908 2_2:-56101702 Msa0259210:CDS
GAAGGAGCTTGAGTCAAAAG+AGG 0.592567 2_2:-56101033 Msa0259210:CDS
ATGAAGAAATTGCTAGTCTG+AGG 0.599505 2_2:-56098257 Msa0259210:CDS
GAGTTTGAATCAAAAGAGAG+GGG 0.602082 2_2:-56101533 Msa0259210:CDS
GCAACTTGATGGCCAAGTGA+AGG 0.602132 2_2:-56101261 Msa0259210:CDS
ATTGCAGGAGCATGAATCAA+AGG 0.606422 2_2:-56101414 Msa0259210:CDS
TGAATGCCAAATGATGGACT+TGG 0.610561 2_2:-56101717 None:intergenic
AAAGTTTGAAGGTCAAGTGA+AGG 0.611491 2_2:-56101639 Msa0259210:CDS
AAATAAAGGAGCCCGAGTCA+AGG 0.611737 2_2:-56100764 Msa0259210:CDS
GAAGGACATTAAATCAAAGG+AGG 0.632909 2_2:-56100991 Msa0259210:CDS
AGCAGCGATTTAAAAGACGA+TGG 0.641163 2_2:-56100908 Msa0259210:CDS
GGAGCTTGAGTCAAAAGAGG+AGG 0.641783 2_2:-56101030 Msa0259210:CDS
CAGGCTTCCAAACAGCTCCA+CGG 0.647974 2_2:+56099079 None:intergenic
GCATTTCGAAAGCATGATGG+AGG 0.653577 2_2:-56101345 Msa0259210:CDS
GGGATTTGAATGCCAAATGG+AGG 0.654030 2_2:-56101513 Msa0259210:CDS
AAACTCTGTTAGCAAAACCC+AGG 0.678318 2_2:+56099060 None:intergenic
CAACCTAATGCAAAGAAACG+GGG 0.689120 2_2:-56098115 Msa0259210:three_prime_UTR
GACACAAGTGAGAAAACTGG+CGG 0.706814 2_2:-56099473 Msa0259210:CDS
TTTGACACAGTGGAATAACG+GGG 0.728582 2_2:+56099366 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGGTTTTACTATAATATTA+TGG - chr2_2:56099222-56099241 Msa0259210:CDS 15.0%
!! TCATCAAATTATGAAATATA+TGG + chr2_2:56099513-56099532 None:intergenic 15.0%
!!! TTTACACAAATTTCAATTTT+TGG + chr2_2:56100386-56100405 None:intergenic 15.0%
!! ATAAGAGTTTATCATATTTA+TGG - chr2_2:56100793-56100812 Msa0259210:CDS 15.0%
!! TCCATATCAAAATAATTATT+CGG - chr2_2:56100968-56100987 Msa0259210:CDS 15.0%
!! TCAAAAGATAACAAACTTAT+AGG - chr2_2:56098512-56098531 Msa0259210:CDS 20.0%
!!! AAAATTTGATGGACAAATAA+AGG - chr2_2:56098880-56098899 Msa0259210:intron 20.0%
!!! AAAATATTTTTTCCTTGACT+CGG + chr2_2:56098909-56098928 None:intergenic 20.0%
!! AAAATATCATCATCATTAAG+AGG + chr2_2:56099001-56099020 None:intergenic 20.0%
!!! AAATTAGTTTGAAAGTCATT+GGG + chr2_2:56099128-56099147 None:intergenic 20.0%
!!! TACATTTTTATGTATCTCTT+AGG - chr2_2:56099168-56099187 Msa0259210:CDS 20.0%
!!! AATTATATTGCAAAAAGTGT+AGG - chr2_2:56099316-56099335 Msa0259210:CDS 20.0%
!! TAAATGTACTTTCTATTGTT+GGG + chr2_2:56099552-56099571 None:intergenic 20.0%
!! ATAAATGTACTTTCTATTGT+TGG + chr2_2:56099553-56099572 None:intergenic 20.0%
!!! ATATCCAAAACAAATTTTGA+TGG + chr2_2:56100263-56100282 None:intergenic 20.0%
!! AGAAAATACTGAAAATTCTT+TGG - chr2_2:56100451-56100470 Msa0259210:intron 20.0%
!!! AATTATTTTGATATGGAATG+TGG + chr2_2:56100965-56100984 None:intergenic 20.0%
!!! TCCGAATAATTATTTTGATA+TGG + chr2_2:56100972-56100991 None:intergenic 20.0%
!! GTTGTTTGAAATACAAGTTA+AGG - chr2_2:56098061-56098080 Msa0259210:three_prime_UTR 25.0%
! TCAAAAAATAACCAACTTGT+AGG - chr2_2:56098092-56098111 Msa0259210:three_prime_UTR 25.0%
! TCAAAAAAGAAGGAATTTGA+AGG - chr2_2:56098470-56098489 Msa0259210:CDS 25.0%
!! GAAGTTTGAAACAAAAGAAA+AGG - chr2_2:56098544-56098563 Msa0259210:intron 25.0%
! AGAGTATAAGTTCAAAGTAA+AGG - chr2_2:56098790-56098809 Msa0259210:intron 25.0%
! TTAAAAGAAAAGCAGTTTGA+AGG - chr2_2:56098827-56098846 Msa0259210:intron 25.0%
! TCAATGCTGAAAAAATTTGA+TGG - chr2_2:56098869-56098888 Msa0259210:intron 25.0%
!!! AAATATTTTTTCCTTGACTC+GGG + chr2_2:56098908-56098927 None:intergenic 25.0%
!! GAGTCAAGGAAAAAATATTT+TGG - chr2_2:56098908-56098927 Msa0259210:intron 25.0%
!!! TCAAGGAAAAAATATTTTGG+TGG - chr2_2:56098911-56098930 Msa0259210:intron 25.0%
!!! CAAGGAAAAAATATTTTGGT+GGG - chr2_2:56098912-56098931 Msa0259210:intron 25.0%
!!! AAGGAAAAAATATTTTGGTG+GGG - chr2_2:56098913-56098932 Msa0259210:intron 25.0%
! TAGATGAATAAGACATTTAC+CGG + chr2_2:56098948-56098967 None:intergenic 25.0%
!! CAAATTAGTTTGAAAGTCAT+TGG + chr2_2:56099129-56099148 None:intergenic 25.0%
! AGATACATAAAAATGTACAG+GGG + chr2_2:56099165-56099184 None:intergenic 25.0%
! GAGATACATAAAAATGTACA+GGG + chr2_2:56099166-56099185 None:intergenic 25.0%
! AGAGATACATAAAAATGTAC+AGG + chr2_2:56099167-56099186 None:intergenic 25.0%
! AATATTCTGACAAACATTGA+GGG - chr2_2:56099342-56099361 Msa0259210:CDS 25.0%
! TTTATGAGTTCATGTACAAA+AGG - chr2_2:56099568-56099587 Msa0259210:intron 25.0%
!!! CTATGTAGTTTTGTATAACA+TGG - chr2_2:56099736-56099755 Msa0259210:intron 25.0%
! TACTAAATATTGGAATGAAC+TGG + chr2_2:56099943-56099962 None:intergenic 25.0%
!!! AGATCCATCAAAATTTGTTT+TGG - chr2_2:56100256-56100275 Msa0259210:intron 25.0%
!!! ACAAATTTCAATTTTTGGTG+AGG + chr2_2:56100381-56100400 None:intergenic 25.0%
!!! TGCTGCTTTTATCAATTTAT+GGG - chr2_2:56100489-56100508 Msa0259210:intron 25.0%
!! TTTTAACGAAGATGAAGTTT+TGG - chr2_2:56100523-56100542 Msa0259210:intron 25.0%
! GATTATCAAATCAAATGAGT+TGG - chr2_2:56100661-56100680 Msa0259210:intron 25.0%
! TATCATATTTATGGTGAACA+TGG - chr2_2:56100802-56100821 Msa0259210:CDS 25.0%
! TCAAAATTTGTCAACCATAT+AGG + chr2_2:56101004-56101023 None:intergenic 25.0%
! ATAAGATGCTTAACAAAATC+AGG + chr2_2:56101110-56101129 None:intergenic 25.0%
!! TATATTCCATTTTCACACAT+AGG - chr2_2:56101318-56101337 Msa0259210:CDS 25.0%
! AACTTGTAACTACTATTGTT+TGG - chr2_2:56101581-56101600 Msa0259210:CDS 25.0%
! ACTTGTAACTACTATTGTTT+GGG - chr2_2:56101582-56101601 Msa0259210:CDS 25.0%
! ACTCTGTAAAAAGATGTAAT+TGG - chr2_2:56101643-56101662 Msa0259210:CDS 25.0%
!! ACAGAGTTATCTTTATTTCT+TGG - chr2_2:56101693-56101712 Msa0259210:CDS 25.0%
TCAAAAGAGAGAAAGTTTGA+AGG - chr2_2:56098008-56098027 Msa0259210:three_prime_UTR 30.0%
TCAAAATTGAGGCTATTGAA+AGG - chr2_2:56098344-56098363 Msa0259210:intron 30.0%
TTGACTCTAATTCCTTCAAT+TGG + chr2_2:56098496-56098515 None:intergenic 30.0%
GGAATTTGAATGTCAAATGA+TGG - chr2_2:56098565-56098584 Msa0259210:intron 30.0%
AGTGAAGGACATTAAATCAA+AGG - chr2_2:56098664-56098683 Msa0259210:intron 30.0%
!! GAATTTTAAAAGCCAAGTTG+AGG - chr2_2:56098712-56098731 Msa0259210:intron 30.0%
TAAGTTCAAAGTAAAGGTGA+AGG - chr2_2:56098796-56098815 Msa0259210:intron 30.0%
!!! AATTTTTTCAGCATTGACTC+AGG + chr2_2:56098866-56098885 None:intergenic 30.0%
!!! AACTCGTGTTTTTTTATCCA+CGG - chr2_2:56099197-56099216 Msa0259210:CDS 30.0%
CAATATTCTGACAAACATTG+AGG - chr2_2:56099341-56099360 Msa0259210:CDS 30.0%
ATATTCTGACAAACATTGAG+GGG - chr2_2:56099343-56099362 Msa0259210:CDS 30.0%
CTAGAAATAGTAGCACTAAT+AGG + chr2_2:56099388-56099407 None:intergenic 30.0%
! TTTTTCACTGCAATCATTCT+AGG + chr2_2:56099699-56099718 None:intergenic 30.0%
! TTTTGTATAACATGGCAGAT+TGG - chr2_2:56099744-56099763 Msa0259210:intron 30.0%
TGAACGTTACAGATAATCTA+GGG + chr2_2:56099888-56099907 None:intergenic 30.0%
TTGAACGTTACAGATAATCT+AGG + chr2_2:56099889-56099908 None:intergenic 30.0%
GCTGCACTTATACTAAATAT+TGG + chr2_2:56099953-56099972 None:intergenic 30.0%
TGTATGACATTGATGAGTTA+CGG + chr2_2:56099975-56099994 None:intergenic 30.0%
ATATGCAGTTGAATCTTACA+TGG - chr2_2:56100118-56100137 Msa0259210:intron 30.0%
!!! CTGCTGCTTTTATCAATTTA+TGG - chr2_2:56100488-56100507 Msa0259210:intron 30.0%
TCTAAGAAACTAGCAACTTA+TGG + chr2_2:56100761-56100780 None:intergenic 30.0%
TATTTATGGTGAACATGGTA+TGG - chr2_2:56100807-56100826 Msa0259210:CDS 30.0%
TTGTTAAGCATCTTATCAAG+AGG - chr2_2:56101114-56101133 Msa0259210:CDS 30.0%
ATTCAGTTGTGCATATAACT+TGG - chr2_2:56101160-56101179 Msa0259210:CDS 30.0%
AAGAAGAACCTTGATTTCAA+TGG + chr2_2:56101273-56101292 None:intergenic 30.0%
GGATTACAAACTAGAATTTG+AGG - chr2_2:56101444-56101463 Msa0259210:CDS 30.0%
AACAACCTAATGCAAAGAAA+CGG - chr2_2:56101541-56101560 Msa0259210:CDS 30.0%
!! AGGATTTTGAAAACCGAATG+AGG - chr2_2:56097976-56097995 Msa0259210:three_prime_UTR 35.0%
!! GGATTTTGAAAACCGAATGA+GGG - chr2_2:56097977-56097996 Msa0259210:three_prime_UTR 35.0%
AAAGTTTGAAGGTCAAGTGA+AGG - chr2_2:56098019-56098038 Msa0259210:three_prime_UTR 35.0%
AGGAGTTTGAATCAAAAGAG+AGG - chr2_2:56098123-56098142 Msa0259210:three_prime_UTR 35.0%
GGAGTTTGAATCAAAAGAGA+GGG - chr2_2:56098124-56098143 Msa0259210:three_prime_UTR 35.0%
GAGTTTGAATCAAAAGAGAG+GGG - chr2_2:56098125-56098144 Msa0259210:three_prime_UTR 35.0%
AGGAGCTCAAATCAAAATTG+AGG - chr2_2:56098333-56098352 Msa0259210:intron 35.0%
GGAGTTTGAGTCAAAAAAGA+AGG - chr2_2:56098460-56098479 Msa0259210:CDS 35.0%
GGAATTTGAAGAACAAGTGA+AGG - chr2_2:56098649-56098668 Msa0259210:intron 35.0%
GAAGGACATTAAATCAAAGG+AGG - chr2_2:56098667-56098686 Msa0259210:intron 35.0%
GGAGGAACTTGAATCAAAAA+AGG - chr2_2:56098688-56098707 Msa0259210:intron 35.0%
! TTGATTTGAAGTCCTCAACT+TGG + chr2_2:56098727-56098746 None:intergenic 35.0%
TAAAAGACGATGGAATGAAC+TGG - chr2_2:56098760-56098779 Msa0259210:intron 35.0%
! TTGGGTGTGATAATGAAATC+TGG + chr2_2:56099110-56099129 None:intergenic 35.0%
!!! TGTTTTTTTATCCACGGCTA+AGG - chr2_2:56099203-56099222 Msa0259210:CDS 35.0%
TTATAGTAAAACCTTAGCCG+TGG + chr2_2:56099217-56099236 None:intergenic 35.0%
AGTAGCACTAATAGGACTAA+TGG + chr2_2:56099380-56099399 None:intergenic 35.0%
GTTTCAACATAGACCTTAAC+TGG + chr2_2:56099454-56099473 None:intergenic 35.0%
GAGAGTCTAGACATAAATAG+AGG + chr2_2:56099635-56099654 None:intergenic 35.0%
AGCAAAATAAGCAGTACAAG+TGG - chr2_2:56099662-56099681 Msa0259210:intron 35.0%
TTGCAAAACAAGCTCTTCAT+TGG + chr2_2:56099784-56099803 None:intergenic 35.0%
AATTCTGTCCAGTTGTATAG+AGG + chr2_2:56099827-56099846 None:intergenic 35.0%
AGATAATCTAGGGAAAGTCA+TGG + chr2_2:56099878-56099897 None:intergenic 35.0%
TATTGGAATGAACTGGATCT+TGG + chr2_2:56099936-56099955 None:intergenic 35.0%
! TTTTGACACAGTGGAATAAC+GGG + chr2_2:56100296-56100315 None:intergenic 35.0%
! CTTTTGACACAGTGGAATAA+CGG + chr2_2:56100297-56100316 None:intergenic 35.0%
GTTATTCCACTGTGTCAAAA+GGG - chr2_2:56100296-56100315 Msa0259210:intron 35.0%
GTTGTTGTAGCAGATAGATT+TGG + chr2_2:56100349-56100368 None:intergenic 35.0%
GAAAATTCTTTGGCTGTTCT+TGG - chr2_2:56100461-56100480 Msa0259210:intron 35.0%
!!! TTTCAATGGAGTTGGTTTTC+AGG + chr2_2:56101259-56101278 None:intergenic 35.0%
AACCAACTCCATTGAAATCA+AGG - chr2_2:56101262-56101281 Msa0259210:CDS 35.0%
AACCTTGATTTCAATGGAGT+TGG + chr2_2:56101267-56101286 None:intergenic 35.0%
TGCTATCCTATGTGTGAAAA+TGG + chr2_2:56101327-56101346 None:intergenic 35.0%
GTTACTGTATACTTGAACTC+AGG - chr2_2:56101366-56101385 Msa0259210:CDS 35.0%
GTATACTTGAACTCAGGATA+AGG - chr2_2:56101372-56101391 Msa0259210:CDS 35.0%
ACTAGCAATTTCTTCATCTC+TGG + chr2_2:56101398-56101417 None:intergenic 35.0%
! ATGAAGAAATTGCTAGTCTG+AGG - chr2_2:56101401-56101420 Msa0259210:CDS 35.0%
TGTAATCCGAAATGCATTGT+AGG + chr2_2:56101432-56101451 None:intergenic 35.0%
ATTTGAGGATCTGCTTCTTA+AGG - chr2_2:56101459-56101478 Msa0259210:CDS 35.0%
! CTTGAGCTAAAAGCACATAA+AGG - chr2_2:56101499-56101518 Msa0259210:CDS 35.0%
ACAACCTAATGCAAAGAAAC+GGG - chr2_2:56101542-56101561 Msa0259210:CDS 35.0%
! GGACTTGGTATCAAAACTGA+AGG - chr2_2:56097956-56097975 Msa0259210:three_prime_UTR 40.0%
! CCTTCATTTTGCCTACAAGT+TGG + chr2_2:56098106-56098125 None:intergenic 40.0%
CCAACTTGTAGGCAAAATGA+AGG - chr2_2:56098103-56098122 Msa0259210:three_prime_UTR 40.0%
GCATTGTGAAAGCCAAATGA+AGG - chr2_2:56098187-56098206 Msa0259210:CDS 40.0%
TTGATTCATGCTCCTGCAAT+CGG + chr2_2:56098244-56098263 None:intergenic 40.0%
! ATTGCAGGAGCATGAATCAA+AGG - chr2_2:56098244-56098263 Msa0259210:CDS 40.0%
! GAAGCATTTCGAAAGCATGA+TGG - chr2_2:56098310-56098329 Msa0259210:intron 40.0%
GCTATTGAAAGGACAACTTC+AGG - chr2_2:56098355-56098374 Msa0259210:intron 40.0%
TCCAAAGAGAAGCAACTTGA+TGG - chr2_2:56098386-56098405 Msa0259210:intron 40.0%
TAGATTCCAACTCCTTCACT+TGG + chr2_2:56098412-56098431 None:intergenic 40.0%
CCATCACTTGTCTTTCAAAG+TGG + chr2_2:56098442-56098461 None:intergenic 40.0%
! CCACTTTGAAAGACAAGTGA+TGG - chr2_2:56098439-56098458 Msa0259210:CDS 40.0%
GGAATTTGAAGGCCAATTGA+AGG - chr2_2:56098481-56098500 Msa0259210:CDS 40.0%
GCGTGTTGAAAACCAAATGA+AGG - chr2_2:56098607-56098626 Msa0259210:intron 40.0%
TTGACTCAAGCTCCTTCATT+TGG + chr2_2:56098622-56098641 None:intergenic 40.0%
GGACATTAAATCAAAGGAGG+AGG - chr2_2:56098670-56098689 Msa0259210:intron 40.0%
AGCAGCGATTTAAAAGACGA+TGG - chr2_2:56098750-56098769 Msa0259210:intron 40.0%
TTTGGTGGGGAAAAAGAATC+CGG - chr2_2:56098926-56098945 Msa0259210:intron 40.0%
ACTAACACTGTCTCCAGTTA+AGG - chr2_2:56099438-56099457 Msa0259210:CDS 40.0%
TCAACCTTCCTCTATACAAC+TGG - chr2_2:56099816-56099835 Msa0259210:intron 40.0%
GATCGATTAAGTCGTACCAT+TGG - chr2_2:56100143-56100162 Msa0259210:intron 40.0%
TTGGACACAAGTGAGAAAAC+TGG - chr2_2:56100182-56100201 Msa0259210:intron 40.0%
TTTGACACAGTGGAATAACG+GGG + chr2_2:56100295-56100314 None:intergenic 40.0%
CGTTATTCCACTGTGTCAAA+AGG - chr2_2:56100295-56100314 Msa0259210:intron 40.0%
GAAGCTAGAGCATGATTTGA+AGG - chr2_2:56100418-56100437 Msa0259210:intron 40.0%
AAACTCTGTTAGCAAAACCC+AGG + chr2_2:56100601-56100620 None:intergenic 40.0%
! GGGTTTTGCTAACAGAGTTT+CGG - chr2_2:56100601-56100620 Msa0259210:intron 40.0%
! GGTTTTGCTAACAGAGTTTC+GGG - chr2_2:56100602-56100621 Msa0259210:intron 40.0%
GACTGCATATAGGAATGGTA+GGG + chr2_2:56100703-56100722 None:intergenic 40.0%
TGACTGCATATAGGAATGGT+AGG + chr2_2:56100704-56100723 None:intergenic 40.0%
TACCATTCCTATATGCAGTC+AGG - chr2_2:56100703-56100722 Msa0259210:intron 40.0%
ATCCTGACTGCATATAGGAA+TGG + chr2_2:56100708-56100727 None:intergenic 40.0%
!!! TTTGCCCTGTTTTTGTCCTA+CGG - chr2_2:56100920-56100939 Msa0259210:CDS 40.0%
AGAACCGTAGGACAAAAACA+GGG + chr2_2:56100927-56100946 None:intergenic 40.0%
TAGAACCGTAGGACAAAAAC+AGG + chr2_2:56100928-56100947 None:intergenic 40.0%
! GTTTTTGTCCTACGGTTCTA+TGG - chr2_2:56100928-56100947 Msa0259210:CDS 40.0%
ATTGTGATCCATAGAACCGT+AGG + chr2_2:56100939-56100958 None:intergenic 40.0%
TGTCAACCATATAGGCGATT+TGG + chr2_2:56100996-56101015 None:intergenic 40.0%
AACTGCTCTCACAAATCAGT+CGG + chr2_2:56101235-56101254 None:intergenic 40.0%
GACTGTCCTACAATGCATTT+CGG - chr2_2:56101423-56101442 Msa0259210:CDS 40.0%
CAACCTAATGCAAAGAAACG+GGG - chr2_2:56101543-56101562 Msa0259210:CDS 40.0%
TTACCCCGTTTCTTTGCATT+AGG + chr2_2:56101549-56101568 None:intergenic 40.0%
AATGCAAAGAAACGGGGTAA+TGG - chr2_2:56101549-56101568 Msa0259210:CDS 40.0%
TTGAGTCAAGCTCCCTCATT+CGG + chr2_2:56097992-56098011 None:intergenic 45.0%
GAGGGGATTTGAATGCCAAA+TGG - chr2_2:56098142-56098161 Msa0259210:exon 45.0%
GGGATTTGAATGCCAAATGG+AGG - chr2_2:56098145-56098164 Msa0259210:exon 45.0%
TCAATACCTGCTCCTCCATT+TGG + chr2_2:56098160-56098179 None:intergenic 45.0%
TGGACTCAAGCTCCTTCATT+TGG + chr2_2:56098202-56098221 None:intergenic 45.0%
!! GTCTTCAAGTTGCTTCGCTT+TGG + chr2_2:56098222-56098241 None:intergenic 45.0%
GGAGCATGAATCAAAGGAGA+AGG - chr2_2:56098250-56098269 Msa0259210:CDS 45.0%
! GCATTTCGAAAGCATGATGG+AGG - chr2_2:56098313-56098332 Msa0259210:intron 45.0%
! GCCATCAAGTTGCTTCTCTT+TGG + chr2_2:56098390-56098409 None:intergenic 45.0%
GAAGGAGCTTGAGTCAAAAG+AGG - chr2_2:56098625-56098644 Msa0259210:intron 45.0%
AAATAAAGGAGCCCGAGTCA+AGG - chr2_2:56098894-56098913 Msa0259210:intron 45.0%
CTGTCCAGTTGTATAGAGGA+AGG + chr2_2:56099823-56099842 None:intergenic 45.0%
CTAGGGAAAGTCATGGAACT+TGG + chr2_2:56099871-56099890 None:intergenic 45.0%
CGATTAAGTCGTACCATTGG+TGG - chr2_2:56100146-56100165 Msa0259210:intron 45.0%
! CTGCAAACTTGTTCCACCAA+TGG + chr2_2:56100162-56100181 None:intergenic 45.0%
TGGTGGAACAAGTTTGCAGT+TGG - chr2_2:56100163-56100182 Msa0259210:intron 45.0%
GACACAAGTGAGAAAACTGG+CGG - chr2_2:56100185-56100204 Msa0259210:intron 45.0%
! TTGTCACCCTTTTGACACAG+TGG + chr2_2:56100305-56100324 None:intergenic 45.0%
TGCTATGCACGAAATTTCCG+TGG - chr2_2:56100562-56100581 Msa0259210:intron 45.0%
GAAATTTCCGTGGAGCTGTT+TGG - chr2_2:56100572-56100591 Msa0259210:intron 45.0%
TCCTATATGCAGTCAGGATG+AGG - chr2_2:56100709-56100728 Msa0259210:intron 45.0%
ACCTCATCCTGACTGCATAT+AGG + chr2_2:56100713-56100732 None:intergenic 45.0%
TATATGCAGTCAGGATGAGG+TGG - chr2_2:56100712-56100731 Msa0259210:intron 45.0%
TCGGAACCAAATCGCCTATA+TGG - chr2_2:56100987-56101006 Msa0259210:CDS 45.0%
ACTGCTCTCACAAATCAGTC+GGG + chr2_2:56101234-56101253 None:intergenic 45.0%
TGAAGGTCAAGTGAAGGAGC+AGG - chr2_2:56098025-56098044 Msa0259210:three_prime_UTR 50.0%
TGAATGCCAAATGGAGGAGC+AGG - chr2_2:56098151-56098170 Msa0259210:exon 50.0%
GCAACTTGAAGACCGATTGC+AGG - chr2_2:56098229-56098248 Msa0259210:CDS 50.0%
! GGAATTTGAAGCTCGAGCGA+AGG - chr2_2:56098271-56098290 Msa0259210:CDS 50.0%
! GCAACTTGATGGCCAAGTGA+AGG - chr2_2:56098397-56098416 Msa0259210:CDS 50.0%
TGATGGCCAAGTGAAGGAGT+TGG - chr2_2:56098403-56098422 Msa0259210:CDS 50.0%
GGAGCTTGAGTCAAAAGAGG+AGG - chr2_2:56098628-56098647 Msa0259210:intron 50.0%
GATCTTGGCGAGGAAAGATG+TGG + chr2_2:56099921-56099940 None:intergenic 50.0%
GAATGAACTGGATCTTGGCG+AGG + chr2_2:56099931-56099950 None:intergenic 50.0%
CACAAATCAGTCGGGCATTC+TGG + chr2_2:56101226-56101245 None:intergenic 50.0%
GCGAGGAAAGATGTGGATGC+TGG + chr2_2:56099914-56099933 None:intergenic 55.0%
CAGGCTTCCAAACAGCTCCA+CGG + chr2_2:56100582-56100601 None:intergenic 55.0%
GTGGAGCTGTTTGGAAGCCT+GGG - chr2_2:56100581-56100600 Msa0259210:intron 55.0%
TGAAGCTCGAGCGAAGGAGC+TGG - chr2_2:56098277-56098296 Msa0259210:intron 60.0%
CGTGGAGCTGTTTGGAAGCC+TGG - chr2_2:56100580-56100599 Msa0259210:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56097954 56101726 56097954 ID=Msa0259210;Name=Msa0259210
chr2_2 mRNA 56097954 56101726 56097954 ID=Msa0259210-mRNA-1;Parent=Msa0259210;Name=Msa0259210-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.66|0.25|1|1|1|4|198|595
chr2_2 exon 56097954 56098292 56097954 ID=Msa0259210-mRNA-1:exon:16956;Parent=Msa0259210-mRNA-1
chr2_2 exon 56098397 56098558 56098397 ID=Msa0259210-mRNA-1:exon:16955;Parent=Msa0259210-mRNA-1
chr2_2 exon 56099064 56099554 56099064 ID=Msa0259210-mRNA-1:exon:16954;Parent=Msa0259210-mRNA-1
chr2_2 exon 56100733 56101726 56100733 ID=Msa0259210-mRNA-1:exon:16953;Parent=Msa0259210-mRNA-1
chr2_2 CDS 56100733 56101726 56100733 ID=Msa0259210-mRNA-1:cds;Parent=Msa0259210-mRNA-1
chr2_2 CDS 56099064 56099554 56099064 ID=Msa0259210-mRNA-1:cds;Parent=Msa0259210-mRNA-1
chr2_2 CDS 56098397 56098558 56098397 ID=Msa0259210-mRNA-1:cds;Parent=Msa0259210-mRNA-1
chr2_2 CDS 56098152 56098292 56098152 ID=Msa0259210-mRNA-1:cds;Parent=Msa0259210-mRNA-1
chr2_2 three_prime_UTR 56097954 56098151 56097954 ID=Msa0259210-mRNA-1:three_prime_utr;Parent=Msa0259210-mRNA-1
Gene Sequence

>Msa0259210

ATGGACTTGGTATCAAAACTGAAGGATTTTGAAAACCGAATGAGGGAGCTTGACTCAAAAGAGAGAAAGTTTGAAGGTCAAGTGAAGGAGCAGGAATCTAAAAAGAAGTTGTTTGAAATACAAGTTAAGGAGTTAGAGTCAAAAAATAACCAACTTGTAGGCAAAATGAAGGAGTTTGAATCAAAAGAGAGGGGATTTGAATGCCAAATGGAGGAGCAGGTATTGAAACAGAAGCATTGTGAAAGCCAAATGAAGGAGCTTGAGTCCAAAGCGAAGCAACTTGAAGACCGATTGCAGGAGCATGAATCAAAGGAGAAGGAATTTGAAGCTCGAGCGAAGGAGCTGGAATCTAAAAAGAAGCATTTCGAAAGCATGATGGAGGAGCTCAAATCAAAATTGAGGCTATTGAAAGGACAACTTCAGGAATTTGACTCCAAAGAGAAGCAACTTGATGGCCAAGTGAAGGAGTTGGAATCTAAAAAGAACCACTTTGAAAGACAAGTGATGGAGTTTGAGTCAAAAAAGAAGGAATTTGAAGGCCAATTGAAGGAATTAGAGTCAAAAGATAACAAACTTATAGGCAAAATAAAGAAGTTTGAAACAAAAGAAAAGGAATTTGAATGTCAAATGATGGACTTGCTATCAAATCAGAAGCGTGTTGAAAACCAAATGAAGGAGCTTGAGTCAAAAGAGGAGGAATTTGAAGAACAAGTGAAGGACATTAAATCAAAGGAGGAGGAACTTGAATCAAAAAAGGAGAATTTTAAAAGCCAAGTTGAGGACTTCAAATCAAAAGAGCAGCGATTTAAAAGACGATGGAATGAACTGGAGTTGAAAGAGTATAAGTTCAAAGTAAAGGTGAAGGAGCTCAACTTAAAAGAAAAGCAGTTTGAAGGACAAGTCAACGATCCTGAGTCAATGCTGAAAAAATTTGATGGACAAATAAAGGAGCCCGAGTCAAGGAAAAAATATTTTGGTGGGGAAAAAGAATCCGTTGAATCTTACATGGATGATCGATTAAGTCGTACCATTGGTGGAACAAGTTTGCAGTTGGACACAAGTGAGAAAACTGGCGGAGTTGAATCGCTTTGCAATAGAATTTTAGTTAGTATGCGAGAATCATCAGATCCATCAAAATTTGTTTTGGATATGATATTGAACCCCGTTATTCCACTGTGTCAAAAGGGTGACAATGCTGTGATTATTGCTGATTACCAAATCTATCTGCTACAACAACTGATGAGAACCTCACCAAAAATTGAAATTTGTGTAAAAAAAGAAGCATTGAAGCTAGAGCATGATTTGAAGGCTAACATGAAAGAAAATACTGAAAATTCTTTGGCTGTTCTTGGTTTTCTGCTGCTTTTATCAATTTATGGGTTGCTTGATTATTTTAACGAAGATGAAGTTTTGGAGCTTTTTGCATTTGTTGCTATGCACGAAATTTCCGTGGAGCTGTTTGGAAGCCTGGGTTTTGCTAACAGACATCTTATCAAGAGGAAGCAATTTGTTGAAGCTGTTAGATTCAGTTGTGCATATAACTTGGATGACAAGAATCGATTAGTTGATATGTTGCGAGAACACATCCAGAATGCCCGACTGATTTGTGAGAGCAGTTGCCTGAAAACCAACTCCATTGAAATCAAGGATAAGGCCAGAGATGAAGAAATTGCTAGTCTGAGGACTGTCCTACAATGCATTTCGGATTACAAACTAGAATTTGAGGATCTGCTTCTTAAGGAGATTGAATATCGCATTCTTGAGCTAAAAGCACATAAAGGCAATTAG
Protein sequence

>Msa0259210

MDLVSKLKDFENRMRELDSKERKFEGQVKEQESKKKLFEIQVKELESKNNQLVGKMKEFESKERGFECQMEEQVLKQKHCESQMKELESKAKQLEDRLQEHESKEKEFEARAKELESKKKHFESMMEELKSKLRLLKGQLQEFDSKEKQLDGQVKELESKKNHFERQVMEFESKKKEFEGQLKELESKDNKLIGKIKKFETKEKEFECQMMDLLSNQKRVENQMKELESKEEEFEEQVKDIKSKEEELESKKENFKSQVEDFKSKEQRFKRRWNELELKEYKFKVKVKELNLKEKQFEGQVNDPESMLKKFDGQIKEPESRKKYFGGEKESVESYMDDRLSRTIGGTSLQLDTSEKTGGVESLCNRILVSMRESSDPSKFVLDMILNPVIPLCQKGDNAVIIADYQIYLLQQLMRTSPKIEICVKKEALKLEHDLKANMKENTENSLAVLGFLLLLSIYGLLDYFNEDEVLELFAFVAMHEISVELFGSLGFANRHLIKRKQFVEAVRFSCAYNLDDKNRLVDMLREHIQNARLICESSCLKTNSIEIKDKARDEEIASLRTVLQCISDYKLEFEDLLLKEIEYRILELKAHKGN*