AlfalfaGEDB | Msa1079230

M. sativa cultivar zhongmu-4 / Msa1079230

KEGG: K02152
GO: GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015988 GO:0015991 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032991 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600
PFAM: PF03179.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079230	sp\|Q9SP55\|VATG_CITLI	69.091	110	34	0	1	110	1	110	2.34e-46	147

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079230	Q2HV42	95.455	110	5	0	1	110	1	110	2.11e-68	209

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1079230	0.812636	3.837419e-51	-8.615850e-47
Msa0002490	Msa1079230	0.808768	2.632616e-50	-8.615850e-47
Msa0003700	Msa1079230	0.816732	4.751370e-52	-8.615850e-47
Msa0003720	Msa1079230	0.835434	1.682153e-56	-8.615850e-47
Msa0003890	Msa1079230	0.801418	9.090660e-49	-8.615850e-47
Msa0004540	Msa1079230	0.800027	1.747486e-48	-8.615850e-47
Msa0007970	Msa1079230	0.815350	9.670559e-52	-8.615850e-47
Msa0011930	Msa1079230	0.804643	1.957239e-49	-8.615850e-47
Msa0012080	Msa1079230	0.818891	1.547291e-52	-8.615850e-47
Msa0012940	Msa1079230	0.822160	2.748913e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079230	MtrunA17_Chr7g0264091	95.455	110	5	1	110	1	110	4.07e-72	209
Msa1079230	MtrunA17_Chr1g0181281	81.308	107	20	3	109	5	111	3.51e-55	167
Msa1079230	MtrunA17_Chr7g0215731	55.046	109	49	1	109	127	235	9.76e-36	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079230	AT4G23710.1	69.903	103	31	0	8	110	4	106	2.29e-44	140
Msa1079230	AT3G01390.4	73.636	110	29	0	1	110	1	110	5.26e-42	134
Msa1079230	AT3G01390.2	73.636	110	29	0	1	110	1	110	5.26e-42	134
Msa1079230	AT3G01390.1	73.636	110	29	0	1	110	1	110	5.26e-42	134
Msa1079230	AT3G01390.3	73.636	110	29	0	1	110	1	110	5.26e-42	134
Msa1079230	AT4G25950.1	54.206	107	47	1	1	107	1	105	1.12e-33	113
Msa1079230	AT4G25950.2	58.462	65	27	0	1	65	1	65	3.68e-19	75.5

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Find 38 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATAAACCATTCATTC+CGG	0.425856	7_2:+78279485	None:intergenic
AATTCCACCTTGACTGTTGT+TGG	0.367869	7_2:+78280548	None:intergenic
ACCGAGGCTAGTAGAATTTC+GGG	0.229288	7_2:-78279830	Msa1079230:CDS
AGACACACACAGTCATTCTC+TGG	0.451638	7_2:-78281543	Msa1079230:five_prime_UTR
AGCCAAAGAAGAGGCTGAAA+AGG	0.415151	7_2:-78280079	Msa1079230:CDS
AGGTGGAATTCAACAATTAT+TGG	0.361539	7_2:-78280535	Msa1079230:CDS
ATACAGAGCAGTGGAGATTC+TGG	0.378837	7_2:-78279908	Msa1079230:intron
ATGGCATCCAACAACAGTCA+AGG	0.643899	7_2:-78280555	Msa1079230:CDS
ATGTATCGCCGTTTCAAAAG+AGG	0.498633	7_2:-78279566	Msa1079230:three_prime_UTR
CAAGAGGTAGAAGCTTTGTT+TGG	0.367408	7_2:-78279389	Msa1079230:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGCTTAAAATTCGAAGAAAA+TGG	+	chr7_2:78279510-78279529	None:intergenic	30.0%
CAAAAGCTAAATGCAAATTG+AGG	+	chr7_2:78279537-78279556	None:intergenic	30.0%
AATTTGATGGAATTGATGGA+AGG	-	chr7_2:78279715-78279734	Msa1079230:three_prime_UTR	30.0%
AAATTGTTCCAGATCAACTA+AGG	+	chr7_2:78279794-78279813	None:intergenic	30.0%
TACACTAGTGTATGAAATTG+TGG	-	chr7_2:78280053-78280072	Msa1079230:CDS	30.0%
AGGTGGAATTCAACAATTAT+TGG	-	chr7_2:78280422-78280441	Msa1079230:intron	30.0%
ATTGTGAATGCTGCAAAAAA+TGG	-	chr7_2:78280468-78280487	Msa1079230:intron	30.0%
CAGTATAATTAAAAAGTGGG+AGG	+	chr7_2:78280743-78280762	None:intergenic	30.0%
AGCATAATTACATAACTGGT+TGG	+	chr7_2:78280787-78280806	None:intergenic	30.0%
TTATTGATCACTCTAGATTC+TGG	-	chr7_2:78281257-78281276	Msa1079230:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	78279369	78281610	78279369	ID=Msa1079230;Name=Msa1079230
chr7_2	mRNA	78279369	78281610	78279369	ID=Msa1079230-mRNA-1;Parent=Msa1079230;Name=Msa1079230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=95\|1\|1\|1\|0.66\|0.5\|4\|412\|110
chr7_2	exon	78279369	78279924	78279369	ID=Msa1079230-mRNA-1:exon:19469;Parent=Msa1079230-mRNA-1
chr7_2	exon	78280023	78280123	78280023	ID=Msa1079230-mRNA-1:exon:19468;Parent=Msa1079230-mRNA-1
chr7_2	exon	78280490	78280578	78280490	ID=Msa1079230-mRNA-1:exon:19467;Parent=Msa1079230-mRNA-1
chr7_2	exon	78281517	78281610	78281517	ID=Msa1079230-mRNA-1:exon:19466;Parent=Msa1079230-mRNA-1
chr7_2	five_prime_UTR	78281517	78281610	78281517	ID=Msa1079230-mRNA-1:five_prime_utr;Parent=Msa1079230-mRNA-1
chr7_2	five_prime_UTR	78280578	78280578	78280578	ID=Msa1079230-mRNA-1:five_prime_utr;Parent=Msa1079230-mRNA-1
chr7_2	CDS	78280490	78280577	78280490	ID=Msa1079230-mRNA-1:cds;Parent=Msa1079230-mRNA-1
chr7_2	CDS	78280023	78280123	78280023	ID=Msa1079230-mRNA-1:cds;Parent=Msa1079230-mRNA-1
chr7_2	CDS	78279781	78279924	78279781	ID=Msa1079230-mRNA-1:cds;Parent=Msa1079230-mRNA-1
chr7_2	three_prime_UTR	78279369	78279780	78279369	ID=Msa1079230-mRNA-1:three_prime_utr;Parent=Msa1079230-mRNA-1

Gene Sequence	>Msa1079230 ATGGCATCCAACAACAGTCAAGGTGGAATTCAACAATTATTGGCTGCTGAACAAGAAGCACAGCGGATTGTGAATGCTGCAAAAAATGAAAAATATGCTAGGTTGAAACAAGCCAAAGAAGAGGCTGAAAAGGAGATCACTAAACATCGAGCTCATTTGGAAAATCATTTTCAAAACAAAGTATCAGCGAGCAGTGGAGATTCTGGTGCTAATGTCAAGCGACTTGAGCAAGAGACTGATACAAAGATCCATCAGCTGAAGACCGAGGCTAGTAGAATTTCGGGGGATGTTGTCAGCACACTTCTCAAGTATGTAACAACCGTGAAGAACTAG
Protein sequence	>Msa1079230 MASNNSQGGIQQLLAAEQEAQRIVNAAKNEKYARLKQAKEEAEKEITKHRAHLENHFQNKVSASSGDSGANVKRLEQETDTKIHQLKTEASRISGDVVSTLLKYVTTVKN*