Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900910 | ABD32667.1 | 54.808 | 208 | 65 | 3 | 14 | 221 | 36 | 214 | 9.75e-62 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900910 | sp|Q9CA59|NRP1_ARATH | 33.939 | 165 | 97 | 5 | 53 | 212 | 69 | 226 | 1.31e-19 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900910 | Q2HTG4 | 54.808 | 208 | 65 | 3 | 14 | 221 | 36 | 214 | 4.66e-62 | 202 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa0900910 | 0.814208 | 1.731699e-51 | -8.615850e-47 |
| Msa0652940 | Msa0900910 | 0.825850 | 3.744371e-54 | -8.615850e-47 |
| Msa0701010 | Msa0900910 | 0.830230 | 3.301815e-55 | -8.615850e-47 |
| Msa0731940 | Msa0900910 | 0.828125 | 1.069812e-54 | -8.615850e-47 |
| Msa0748970 | Msa0900910 | 0.921428 | 3.625305e-88 | -8.615850e-47 |
| Msa0768290 | Msa0900910 | 0.833946 | 3.980576e-56 | -8.615850e-47 |
| Msa0768370 | Msa0900910 | 0.840484 | 8.459911e-58 | -8.615850e-47 |
| Msa0773180 | Msa0900910 | 0.803146 | 4.006258e-49 | -8.615850e-47 |
| Msa0810220 | Msa0900910 | 0.801904 | 7.223868e-49 | -8.615850e-47 |
| Msa0826320 | Msa0900910 | 0.839324 | 1.696149e-57 | -8.615850e-47 |
| Msa0131770 | Msa0900910 | 0.827430 | 1.571101e-54 | -8.615850e-47 |
| Msa0145190 | Msa0900910 | 0.813961 | 1.963932e-51 | -8.615850e-47 |
| Msa0180500 | Msa0900910 | 0.810036 | 1.407019e-50 | -8.615850e-47 |
| Msa0380850 | Msa0900910 | 0.801799 | 7.592148e-49 | -8.615850e-47 |
| Msa0385840 | Msa0900910 | 0.809104 | 2.231309e-50 | -8.615850e-47 |
| Msa0411390 | Msa0900910 | 0.803213 | 3.881713e-49 | -8.615850e-47 |
| Msa0413410 | Msa0900910 | 0.803145 | 4.009375e-49 | -8.615850e-47 |
| Msa0424320 | Msa0900910 | 0.839219 | 1.806614e-57 | -8.615850e-47 |
| Msa0434000 | Msa0900910 | 0.826338 | 2.865878e-54 | -8.615850e-47 |
| Msa0251640 | Msa0900910 | 0.804305 | 2.302133e-49 | -8.615850e-47 |
| Msa0278190 | Msa0900910 | 0.804251 | 2.363306e-49 | -8.615850e-47 |
| Msa0339620 | Msa0900910 | 0.805023 | 1.630459e-49 | -8.615850e-47 |
| Msa0342750 | Msa0900910 | 0.947556 | 5.346336e-106 | -8.615850e-47 |
| Msa0493000 | Msa0900910 | 0.814105 | 1.825156e-51 | -8.615850e-47 |
| Msa0523940 | Msa0900910 | 0.827642 | 1.397886e-54 | -8.615850e-47 |
| Msa0537720 | Msa0900910 | 0.834373 | 3.112016e-56 | -8.615850e-47 |
| Msa0556430 | Msa0900910 | 0.808662 | 2.773726e-50 | -8.615850e-47 |
| Msa0585230 | Msa0900910 | 0.817438 | 3.298026e-52 | -8.615850e-47 |
| Msa0844490 | Msa0900910 | 0.837365 | 5.426821e-57 | -8.615850e-47 |
| Msa0857640 | Msa0900910 | 0.813085 | 3.059901e-51 | -8.615850e-47 |
| Msa0861130 | Msa0900910 | 0.801834 | 7.467531e-49 | -8.615850e-47 |
| Msa0864070 | Msa0900910 | 0.806131 | 9.544610e-50 | -8.615850e-47 |
| Msa0868700 | Msa0900910 | 0.809366 | 1.960985e-50 | -8.615850e-47 |
| Msa0877250 | Msa0900910 | 0.844363 | 7.921651e-59 | -8.615850e-47 |
| Msa0888130 | Msa0900910 | 0.808585 | 2.881200e-50 | -8.615850e-47 |
| Msa0899430 | Msa0900910 | 0.816113 | 6.537643e-52 | -8.615850e-47 |
| Msa0899450 | Msa0900910 | 0.816154 | 6.402308e-52 | -8.615850e-47 |
| Msa0900910 | Msa0900980 | 0.808515 | 2.981664e-50 | -8.615850e-47 |
| Msa0900910 | Msa0901020 | 0.846321 | 2.338194e-59 | -8.615850e-47 |
| Msa0900910 | Msa0901070 | 0.926133 | 7.121166e-91 | -8.615850e-47 |
| Msa0900910 | Msa0907950 | 0.807781 | 4.273963e-50 | -8.615850e-47 |
| Msa0900910 | Msa0927380 | 0.809049 | 2.293222e-50 | -8.615850e-47 |
| Msa0900910 | Msa0936300 | 0.832367 | 9.841713e-56 | -8.615850e-47 |
| Msa0900910 | Msa0958550 | 0.813807 | 2.123506e-51 | -8.615850e-47 |
| Msa0900910 | Msa0966750 | 0.866118 | 3.600790e-65 | -8.615850e-47 |
| Msa0900910 | Msa0966770 | 0.839279 | 1.743034e-57 | -8.615850e-47 |
| Msa0900910 | Msa0967280 | 0.852895 | 3.419717e-61 | -8.615850e-47 |
| Msa0900910 | Msa0969520 | 0.805291 | 1.432708e-49 | -8.615850e-47 |
| Msa0900910 | Msa0969810 | 0.800671 | 1.291779e-48 | -8.615850e-47 |
| Msa0900910 | Msa0973100 | 0.839976 | 1.147590e-57 | -8.615850e-47 |
| Msa0900910 | Msa0974080 | 0.816001 | 6.923137e-52 | -8.615850e-47 |
| Msa0900910 | Msa0976670 | 0.817548 | 3.115184e-52 | -8.615850e-47 |
| Msa0900910 | Msa1023950 | 0.804582 | 2.015402e-49 | -8.615850e-47 |
| Msa0900910 | Msa1069990 | 0.800072 | 1.711208e-48 | -8.615850e-47 |
| Msa0900910 | Msa1075540 | 0.803652 | 3.146846e-49 | -8.615850e-47 |
| Msa0900910 | Msa1120740 | 0.803416 | 3.522465e-49 | -8.615850e-47 |
| Msa0900910 | Msa1121480 | 0.834444 | 2.987438e-56 | -8.615850e-47 |
| Msa0900910 | Msa1121490 | 0.837420 | 5.254175e-57 | -8.615850e-47 |
| Msa0900910 | Msa1137570 | 0.809306 | 2.019618e-50 | -8.615850e-47 |
| Msa0900910 | Msa1144450 | 0.818115 | 2.319899e-52 | -8.615850e-47 |
| Msa0900910 | Msa1248300 | 0.820212 | 7.728728e-53 | -8.615850e-47 |
| Msa0900910 | Msa1248310 | 0.836267 | 1.034368e-56 | -8.615850e-47 |
| Msa0900910 | Msa1248370 | 0.844033 | 9.711496e-59 | -8.615850e-47 |
| Msa0900910 | Msa1276890 | 0.800581 | 1.347385e-48 | -8.615850e-47 |
| Msa0900910 | Msa1277660 | 0.805313 | 1.417740e-49 | -8.615850e-47 |
| Msa0900910 | Msa1282580 | -0.810377 | 1.188275e-50 | -8.615850e-47 |
| Msa0900910 | Msa1284680 | 0.810842 | 9.425227e-51 | -8.615850e-47 |
| Msa0900910 | Msa1286800 | 0.805047 | 1.611678e-49 | -8.615850e-47 |
| Msa0900910 | Msa1288560 | 0.800804 | 1.213887e-48 | -8.615850e-47 |
| Msa0900910 | Msa1299120 | 0.815990 | 6.962506e-52 | -8.615850e-47 |
| Msa0900910 | Msa1345220 | 0.803060 | 4.174699e-49 | -8.615850e-47 |
| Msa0900910 | Msa1366810 | 0.833986 | 3.891722e-56 | -8.615850e-47 |
| Msa0900910 | Msa1366970 | 0.819402 | 1.183441e-52 | -8.615850e-47 |
| Msa0900910 | Msa1384240 | 0.822214 | 2.670311e-53 | -8.615850e-47 |
| Msa0900910 | Msa1395900 | 0.802606 | 5.178872e-49 | -8.615850e-47 |
| Msa0900910 | Msa1420820 | 0.823805 | 1.136356e-53 | -8.615850e-47 |
| Msa0900910 | Msa1458750 | 0.842203 | 2.984146e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900910 | MtrunA17_Chr6g0487501 | 39.496 | 119 | 65 | 2 | 85 | 196 | 33 | 151 | 9.03e-20 | 82.4 |
| Msa0900910 | MtrunA17_Chr3g0092521 | 32.919 | 161 | 96 | 5 | 53 | 209 | 67 | 219 | 4.73e-19 | 82.8 |
| Msa0900910 | MtrunA17_Chr4g0060621 | 30.675 | 163 | 101 | 6 | 53 | 211 | 64 | 218 | 4.64e-16 | 74.7 |
| Msa0900910 | MtrunA17_Chr4g0064221 | 27.528 | 178 | 106 | 8 | 53 | 218 | 164 | 330 | 8.55e-12 | 63.5 |
| Msa0900910 | MtrunA17_Chr6g0487861 | 41.096 | 73 | 43 | 0 | 53 | 125 | 9 | 81 | 1.17e-11 | 58.9 |
| Msa0900910 | MtrunA17_Chr6g0487691 | 41.096 | 73 | 43 | 0 | 53 | 125 | 9 | 81 | 1.17e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900910 | AT1G74560.1 | 33.939 | 165 | 97 | 5 | 53 | 212 | 69 | 226 | 1.33e-20 | 87.4 |
| Msa0900910 | AT1G74560.3 | 33.566 | 143 | 86 | 3 | 53 | 193 | 69 | 204 | 6.12e-18 | 80.5 |
| Msa0900910 | AT1G18800.1 | 30.675 | 163 | 99 | 5 | 53 | 209 | 65 | 219 | 2.67e-17 | 78.6 |
Find 33 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACATGGATTCTGGTTTA+AGG | 0.177881 | 6_1:-97150596 | Msa0900910:CDS |
| GATTATTATTTGTTTGATTA+TGG | 0.226047 | 6_1:-97149969 | Msa0900910:three_prime_UTR |
| CAGATGCATTTGAGATGTTT+TGG | 0.252559 | 6_1:-97150192 | Msa0900910:CDS |
| TTTCGCGCTTACATGGATTC+TGG | 0.322014 | 6_1:-97150603 | Msa0900910:CDS |
| ATTCTGGTTTAAGGCGATTA+AGG | 0.325501 | 6_1:-97150587 | Msa0900910:CDS |
| TAAATTAAATGTTCTTTGTT+TGG | 0.338500 | 6_1:-97149940 | Msa0900910:three_prime_UTR |
| CTGAATCTATTGCATTCAAC+TGG | 0.388969 | 6_1:+97150545 | None:intergenic |
| CTCTCTTCACAAACAATGTC+GGG | 0.397057 | 6_1:+97150331 | None:intergenic |
| TTCAACTGGCGACCAATGTC+TGG | 0.403365 | 6_1:+97150559 | None:intergenic |
| GAACATATTTCGCGCTTACA+TGG | 0.441207 | 6_1:-97150610 | Msa0900910:CDS |
| TGAAGAGAGAGATGAGGATG+AGG | 0.446237 | 6_1:-97150317 | Msa0900910:CDS |
| CACGTTCAATCTTCTCCACC+CGG | 0.468969 | 6_1:+97150689 | None:intergenic |
| GTGGTTTGAAATTGAGATGC+GGG | 0.475190 | 6_1:-97150970 | Msa0900910:CDS |
| AATAAATGTGGTTATTATTG+AGG | 0.481101 | 6_1:-97149884 | None:intergenic |
| GGGATGGATGTTTCTGATGA+GGG | 0.503789 | 6_1:-97150996 | Msa0900910:CDS |
| CTGAATCTTCATGCATACAT+TGG | 0.523603 | 6_1:-97150366 | Msa0900910:CDS |
| AGGGATGGATGTTTCTGATG+AGG | 0.538812 | 6_1:-97150997 | None:intergenic |
| TCTCTCTTCACAAACAATGT+CGG | 0.541509 | 6_1:+97150330 | None:intergenic |
| AGAGAGAGATGAGGATGAGG+AGG | 0.543196 | 6_1:-97150314 | Msa0900910:CDS |
| ATTATTTGTTTGAATAAATG+TGG | 0.560942 | 6_1:-97149896 | Msa0900910:three_prime_UTR |
| ATGTTTCTGATGAGGGAAGG+TGG | 0.567771 | 6_1:-97150989 | Msa0900910:CDS |
| CAACTCTTCTTCATCAGATG+TGG | 0.573742 | 6_1:+97150234 | None:intergenic |
| GATGAAGAAGAGTTGAGTGA+TGG | 0.593224 | 6_1:-97150226 | Msa0900910:CDS |
| TGGATGTTTCTGATGAGGGA+AGG | 0.596404 | 6_1:-97150992 | Msa0900910:CDS |
| GACACAGAGGATGAAGTTGA+TGG | 0.599003 | 6_1:-97150133 | Msa0900910:CDS |
| TCACCTTGTAGATACTTCAA+AGG | 0.607832 | 6_1:+97150163 | None:intergenic |
| ATTAAGGCTCATCCAGACAT+TGG | 0.614087 | 6_1:-97150571 | Msa0900910:CDS |
| GATCCTTTGAAGTATCTACA+AGG | 0.624256 | 6_1:-97150166 | Msa0900910:CDS |
| GGTGGTTTGAAATTGAGATG+CGG | 0.640779 | 6_1:-97150971 | Msa0900910:CDS |
| TGTTTGTGAAGAGAGAGATG+AGG | 0.664206 | 6_1:-97150323 | Msa0900910:CDS |
| AAAACCAAGAAAATATGATG+AGG | 0.665852 | 6_1:-97150947 | Msa0900910:CDS |
| GATGAGGATGAGGAGGACGA+CGG | 0.699737 | 6_1:-97150307 | Msa0900910:CDS |
| AGGTGATGATGATGACACAG+AGG | 0.802099 | 6_1:-97150146 | Msa0900910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGTTAGTTTATTTAATAT+GGG | + | chr6_1:97150115-97150134 | None:intergenic | 10.0% |
| !!! | TTAAGTTAGTTTATTTAATA+TGG | + | chr6_1:97150116-97150135 | None:intergenic | 10.0% |
| !!! | TAAGTTAGTTTATTTAATAT+GGG | + | chr6_1:97150115-97150134 | None:intergenic | 10.0% |
| !!! | TTAAGTTAGTTTATTTAATA+TGG | + | chr6_1:97150116-97150135 | None:intergenic | 10.0% |
| !! | TCATTAAAAAAAAAAACACT+TGG | + | chr6_1:97149966-97149985 | None:intergenic | 15.0% |
| !! | AATAAAATCAAGGATTTATA+AGG | + | chr6_1:97150081-97150100 | None:intergenic | 15.0% |
| !!! | TTTTTCATATACAATTTCAA+TGG | + | chr6_1:97150384-97150403 | None:intergenic | 15.0% |
| !!! | TATTAGTTGTTTTTTGATTA+TGG | - | chr6_1:97150858-97150877 | Msa0900910:intron | 15.0% |
| !! | GATTATTATTTGTTTGATTA+TGG | - | chr6_1:97150910-97150929 | Msa0900910:intron | 15.0% |
| !! | TAAATTAAATGTTCTTTGTT+TGG | - | chr6_1:97150939-97150958 | Msa0900910:CDS | 15.0% |
| !! | ATTATTTGTTTGAATAAATG+TGG | - | chr6_1:97150983-97151002 | Msa0900910:CDS | 15.0% |
| !! | TCATTAAAAAAAAAAACACT+TGG | + | chr6_1:97149966-97149985 | None:intergenic | 15.0% |
| !! | AATAAAATCAAGGATTTATA+AGG | + | chr6_1:97150081-97150100 | None:intergenic | 15.0% |
| !!! | TTTTTCATATACAATTTCAA+TGG | + | chr6_1:97150384-97150403 | None:intergenic | 15.0% |
| !!! | TATTAGTTGTTTTTTGATTA+TGG | - | chr6_1:97150858-97150877 | Msa0900910:intron | 15.0% |
| !! | GATTATTATTTGTTTGATTA+TGG | - | chr6_1:97150910-97150929 | Msa0900910:intron | 15.0% |
| !! | TAAATTAAATGTTCTTTGTT+TGG | - | chr6_1:97150939-97150958 | Msa0900910:CDS | 15.0% |
| !! | ATTATTTGTTTGAATAAATG+TGG | - | chr6_1:97150983-97151002 | Msa0900910:CDS | 15.0% |
| !! | AAAAAAAAAACACTTGGATA+CGG | + | chr6_1:97149960-97149979 | None:intergenic | 20.0% |
| !!! | TATTATTATTTTAGACTCTC+CGG | - | chr6_1:97150171-97150190 | Msa0900910:CDS | 20.0% |
| !!! | GAAAATGAATATTTTTCCAA+TGG | - | chr6_1:97150443-97150462 | Msa0900910:CDS | 20.0% |
| !! | AAAAAAAAAACACTTGGATA+CGG | + | chr6_1:97149960-97149979 | None:intergenic | 20.0% |
| !!! | TATTATTATTTTAGACTCTC+CGG | - | chr6_1:97150171-97150190 | Msa0900910:CDS | 20.0% |
| !!! | GAAAATGAATATTTTTCCAA+TGG | - | chr6_1:97150443-97150462 | Msa0900910:CDS | 20.0% |
| ! | AAAACCAAGAAAATATGATG+AGG | - | chr6_1:97149932-97149951 | Msa0900910:three_prime_UTR | 25.0% |
| ! | CTTAGAGTTCAATAAAATCA+AGG | + | chr6_1:97150091-97150110 | None:intergenic | 25.0% |
| !!! | ATTATTATTTTAGACTCTCC+GGG | - | chr6_1:97150172-97150191 | Msa0900910:CDS | 25.0% |
| ! | TATGAAAAAGATTCAGAATC+AGG | - | chr6_1:97150395-97150414 | Msa0900910:CDS | 25.0% |
| ! | GAACCAATTGAAAAAACTTT+GGG | + | chr6_1:97150621-97150640 | None:intergenic | 25.0% |
| ! | TGAACCAATTGAAAAAACTT+TGG | + | chr6_1:97150622-97150641 | None:intergenic | 25.0% |
| ! | AAAACCAAGAAAATATGATG+AGG | - | chr6_1:97149932-97149951 | Msa0900910:three_prime_UTR | 25.0% |
| ! | CTTAGAGTTCAATAAAATCA+AGG | + | chr6_1:97150091-97150110 | None:intergenic | 25.0% |
| !!! | ATTATTATTTTAGACTCTCC+GGG | - | chr6_1:97150172-97150191 | Msa0900910:CDS | 25.0% |
| ! | TATGAAAAAGATTCAGAATC+AGG | - | chr6_1:97150395-97150414 | Msa0900910:CDS | 25.0% |
| ! | GAACCAATTGAAAAAACTTT+GGG | + | chr6_1:97150621-97150640 | None:intergenic | 25.0% |
| ! | TGAACCAATTGAAAAAACTT+TGG | + | chr6_1:97150622-97150641 | None:intergenic | 25.0% |
| ! | GGTACCTCATCATATTTTCT+TGG | + | chr6_1:97149939-97149958 | None:intergenic | 35.0% |
| !! | CTTACATGGATTCTGGTTTA+AGG | - | chr6_1:97150283-97150302 | Msa0900910:CDS | 35.0% |
| !! | ATTCTGGTTTAAGGCGATTA+AGG | - | chr6_1:97150292-97150311 | Msa0900910:CDS | 35.0% |
| CTGAATCTATTGCATTCAAC+TGG | + | chr6_1:97150337-97150356 | None:intergenic | 35.0% | |
| CTGAATCTTCATGCATACAT+TGG | - | chr6_1:97150513-97150532 | Msa0900910:CDS | 35.0% | |
| TCTCTCTTCACAAACAATGT+CGG | + | chr6_1:97150552-97150571 | None:intergenic | 35.0% | |
| CCAATTGAAAAAACTTTGGG+AGG | + | chr6_1:97150618-97150637 | None:intergenic | 35.0% | |
| !!! | CCTCCCAAAGTTTTTTCAAT+TGG | - | chr6_1:97150615-97150634 | Msa0900910:CDS | 35.0% |
| !! | CAGATGCATTTGAGATGTTT+TGG | - | chr6_1:97150687-97150706 | Msa0900910:CDS | 35.0% |
| !! | GATCCTTTGAAGTATCTACA+AGG | - | chr6_1:97150713-97150732 | Msa0900910:intron | 35.0% |
| TCACCTTGTAGATACTTCAA+AGG | + | chr6_1:97150719-97150738 | None:intergenic | 35.0% | |
| ! | GGTACCTCATCATATTTTCT+TGG | + | chr6_1:97149939-97149958 | None:intergenic | 35.0% |
| !! | CTTACATGGATTCTGGTTTA+AGG | - | chr6_1:97150283-97150302 | Msa0900910:CDS | 35.0% |
| !! | ATTCTGGTTTAAGGCGATTA+AGG | - | chr6_1:97150292-97150311 | Msa0900910:CDS | 35.0% |
| CTGAATCTATTGCATTCAAC+TGG | + | chr6_1:97150337-97150356 | None:intergenic | 35.0% | |
| CTGAATCTTCATGCATACAT+TGG | - | chr6_1:97150513-97150532 | Msa0900910:CDS | 35.0% | |
| TCTCTCTTCACAAACAATGT+CGG | + | chr6_1:97150552-97150571 | None:intergenic | 35.0% | |
| CCAATTGAAAAAACTTTGGG+AGG | + | chr6_1:97150618-97150637 | None:intergenic | 35.0% | |
| !!! | CCTCCCAAAGTTTTTTCAAT+TGG | - | chr6_1:97150615-97150634 | Msa0900910:CDS | 35.0% |
| !! | CAGATGCATTTGAGATGTTT+TGG | - | chr6_1:97150687-97150706 | Msa0900910:CDS | 35.0% |
| !! | GATCCTTTGAAGTATCTACA+AGG | - | chr6_1:97150713-97150732 | Msa0900910:intron | 35.0% |
| TCACCTTGTAGATACTTCAA+AGG | + | chr6_1:97150719-97150738 | None:intergenic | 35.0% | |
| ! | GGTGGTTTGAAATTGAGATG+CGG | - | chr6_1:97149908-97149927 | Msa0900910:three_prime_UTR | 40.0% |
| ! | GTGGTTTGAAATTGAGATGC+GGG | - | chr6_1:97149909-97149928 | Msa0900910:three_prime_UTR | 40.0% |
| !!! | ATTATTTTAGACTCTCCGGG+TGG | - | chr6_1:97150175-97150194 | Msa0900910:CDS | 40.0% |
| GAACATATTTCGCGCTTACA+TGG | - | chr6_1:97150269-97150288 | Msa0900910:CDS | 40.0% | |
| ATTAAGGCTCATCCAGACAT+TGG | - | chr6_1:97150308-97150327 | Msa0900910:CDS | 40.0% | |
| ACGCTTAAAAATGCGACCAT+TGG | + | chr6_1:97150462-97150481 | None:intergenic | 40.0% | |
| CTCTCTTCACAAACAATGTC+GGG | + | chr6_1:97150551-97150570 | None:intergenic | 40.0% | |
| TGTTTGTGAAGAGAGAGATG+AGG | - | chr6_1:97150556-97150575 | Msa0900910:CDS | 40.0% | |
| CAACTCTTCTTCATCAGATG+TGG | + | chr6_1:97150648-97150667 | None:intergenic | 40.0% | |
| GATGAAGAAGAGTTGAGTGA+TGG | - | chr6_1:97150653-97150672 | Msa0900910:CDS | 40.0% | |
| ! | GGTGGTTTGAAATTGAGATG+CGG | - | chr6_1:97149908-97149927 | Msa0900910:three_prime_UTR | 40.0% |
| ! | GTGGTTTGAAATTGAGATGC+GGG | - | chr6_1:97149909-97149928 | Msa0900910:three_prime_UTR | 40.0% |
| !!! | ATTATTTTAGACTCTCCGGG+TGG | - | chr6_1:97150175-97150194 | Msa0900910:CDS | 40.0% |
| GAACATATTTCGCGCTTACA+TGG | - | chr6_1:97150269-97150288 | Msa0900910:CDS | 40.0% | |
| ATTAAGGCTCATCCAGACAT+TGG | - | chr6_1:97150308-97150327 | Msa0900910:CDS | 40.0% | |
| ACGCTTAAAAATGCGACCAT+TGG | + | chr6_1:97150462-97150481 | None:intergenic | 40.0% | |
| CTCTCTTCACAAACAATGTC+GGG | + | chr6_1:97150551-97150570 | None:intergenic | 40.0% | |
| TGTTTGTGAAGAGAGAGATG+AGG | - | chr6_1:97150556-97150575 | Msa0900910:CDS | 40.0% | |
| CAACTCTTCTTCATCAGATG+TGG | + | chr6_1:97150648-97150667 | None:intergenic | 40.0% | |
| GATGAAGAAGAGTTGAGTGA+TGG | - | chr6_1:97150653-97150672 | Msa0900910:CDS | 40.0% | |
| ! | TGGATGTTTCTGATGAGGGA+AGG | - | chr6_1:97149887-97149906 | Msa0900910:three_prime_UTR | 45.0% |
| ! | ATGTTTCTGATGAGGGAAGG+TGG | - | chr6_1:97149890-97149909 | Msa0900910:three_prime_UTR | 45.0% |
| TTTCGCGCTTACATGGATTC+TGG | - | chr6_1:97150276-97150295 | Msa0900910:CDS | 45.0% | |
| !!! | AAGCGTTTTAACTTGCGCGA+CGG | - | chr6_1:97150476-97150495 | Msa0900910:CDS | 45.0% |
| TGAAGAGAGAGATGAGGATG+AGG | - | chr6_1:97150562-97150581 | Msa0900910:CDS | 45.0% | |
| ! | AGGTGATGATGATGACACAG+AGG | - | chr6_1:97150733-97150752 | Msa0900910:intron | 45.0% |
| GACACAGAGGATGAAGTTGA+TGG | - | chr6_1:97150746-97150765 | Msa0900910:intron | 45.0% | |
| ! | TGGATGTTTCTGATGAGGGA+AGG | - | chr6_1:97149887-97149906 | Msa0900910:three_prime_UTR | 45.0% |
| ! | ATGTTTCTGATGAGGGAAGG+TGG | - | chr6_1:97149890-97149909 | Msa0900910:three_prime_UTR | 45.0% |
| TTTCGCGCTTACATGGATTC+TGG | - | chr6_1:97150276-97150295 | Msa0900910:CDS | 45.0% | |
| !!! | AAGCGTTTTAACTTGCGCGA+CGG | - | chr6_1:97150476-97150495 | Msa0900910:CDS | 45.0% |
| TGAAGAGAGAGATGAGGATG+AGG | - | chr6_1:97150562-97150581 | Msa0900910:CDS | 45.0% | |
| ! | AGGTGATGATGATGACACAG+AGG | - | chr6_1:97150733-97150752 | Msa0900910:intron | 45.0% |
| GACACAGAGGATGAAGTTGA+TGG | - | chr6_1:97150746-97150765 | Msa0900910:intron | 45.0% | |
| CACGTTCAATCTTCTCCACC+CGG | + | chr6_1:97150193-97150212 | None:intergenic | 50.0% | |
| TTCAACTGGCGACCAATGTC+TGG | + | chr6_1:97150323-97150342 | None:intergenic | 50.0% | |
| AGAGAGAGATGAGGATGAGG+AGG | - | chr6_1:97150565-97150584 | Msa0900910:CDS | 50.0% | |
| CACGTTCAATCTTCTCCACC+CGG | + | chr6_1:97150193-97150212 | None:intergenic | 50.0% | |
| TTCAACTGGCGACCAATGTC+TGG | + | chr6_1:97150323-97150342 | None:intergenic | 50.0% | |
| AGAGAGAGATGAGGATGAGG+AGG | - | chr6_1:97150565-97150584 | Msa0900910:CDS | 50.0% | |
| GATGAGGATGAGGAGGACGA+CGG | - | chr6_1:97150572-97150591 | Msa0900910:CDS | 55.0% | |
| GATGAGGATGAGGAGGACGA+CGG | - | chr6_1:97150572-97150591 | Msa0900910:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 97149886 | 97151015 | 97149886 | ID=Msa0900910;Name=Msa0900910 |
| chr6_1 | mRNA | 97149886 | 97151015 | 97149886 | ID=Msa0900910-mRNA-1;Parent=Msa0900910;Name=Msa0900910-mRNA-1;_AED=0.05;_eAED=0.13;_QI=0|0|0.5|1|1|1|2|243|222 |
| chr6_1 | exon | 97149886 | 97150716 | 97149886 | ID=Msa0900910-mRNA-1:exon:16969;Parent=Msa0900910-mRNA-1 |
| chr6_1 | exon | 97150935 | 97151015 | 97150935 | ID=Msa0900910-mRNA-1:exon:16968;Parent=Msa0900910-mRNA-1 |
| chr6_1 | CDS | 97150935 | 97151015 | 97150935 | ID=Msa0900910-mRNA-1:cds;Parent=Msa0900910-mRNA-1 |
| chr6_1 | CDS | 97150129 | 97150716 | 97150129 | ID=Msa0900910-mRNA-1:cds;Parent=Msa0900910-mRNA-1 |
| chr6_1 | three_prime_UTR | 97149886 | 97150128 | 97149886 | ID=Msa0900910-mRNA-1:three_prime_utr;Parent=Msa0900910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
