Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0971840 | XP_013450804.1 | 97.098 | 448 | 13 | 0 | 1 | 448 | 1 | 448 | 0.0 | 911 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0971840 | sp|Q04903|FNTB_PEA | 83.929 | 448 | 43 | 1 | 1 | 448 | 1 | 419 | 0.0 | 787 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0971840 | A0A072U531 | 97.098 | 448 | 13 | 0 | 1 | 448 | 1 | 448 | 0.0 | 911 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093010 | Msa0971840 | 0.800684 | 1.283880e-48 | -8.615850e-47 |
| Msa0603570 | Msa0971840 | 0.801212 | 1.001637e-48 | -8.615850e-47 |
| Msa0693210 | Msa0971840 | 0.804437 | 2.160737e-49 | -8.615850e-47 |
| Msa0838370 | Msa0971840 | 0.816310 | 5.907820e-52 | -8.615850e-47 |
| Msa0177960 | Msa0971840 | 0.806391 | 8.416240e-50 | -8.615850e-47 |
| Msa0190590 | Msa0971840 | 0.819348 | 1.217874e-52 | -8.615850e-47 |
| Msa0236620 | Msa0971840 | 0.809698 | 1.664010e-50 | -8.615850e-47 |
| Msa0376820 | Msa0971840 | 0.811320 | 7.424918e-51 | -8.615850e-47 |
| Msa0472130 | Msa0971840 | 0.813075 | 3.074505e-51 | -8.615850e-47 |
| Msa0245580 | Msa0971840 | 0.846976 | 1.547944e-59 | -8.615850e-47 |
| Msa0295250 | Msa0971840 | 0.815911 | 7.252317e-52 | -8.615850e-47 |
| Msa0858440 | Msa0971840 | 0.801636 | 8.201420e-49 | -8.615850e-47 |
| Msa0913240 | Msa0971840 | 0.816958 | 4.227313e-52 | -8.615850e-47 |
| Msa0971840 | Msa1165780 | 0.809142 | 2.189780e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0971840 | MtrunA17_Chr6g0450801 | 97.098 | 448 | 13 | 0 | 1 | 448 | 1 | 448 | 0.0 | 911 |
| Msa0971840 | MtrunA17_Chr8g0378251 | 31.502 | 273 | 176 | 4 | 44 | 309 | 1 | 269 | 4.45e-35 | 132 |
| Msa0971840 | MtrunA17_Chr7g0223251 | 31.845 | 336 | 175 | 14 | 47 | 335 | 15 | 343 | 3.82e-33 | 128 |
| Msa0971840 | MtrunA17_Chr1g0210041 | 30.980 | 255 | 171 | 3 | 44 | 297 | 1 | 251 | 5.34e-33 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0971840 | AT5G40280.1 | 58.676 | 438 | 180 | 1 | 8 | 445 | 42 | 478 | 2.32e-179 | 510 |
| Msa0971840 | AT5G40280.2 | 54.681 | 470 | 180 | 2 | 8 | 445 | 42 | 510 | 3.53e-172 | 493 |
| Msa0971840 | AT3G12070.2 | 33.478 | 230 | 148 | 4 | 69 | 297 | 30 | 255 | 1.04e-32 | 126 |
| Msa0971840 | AT3G12070.1 | 33.478 | 230 | 148 | 4 | 69 | 297 | 30 | 255 | 1.04e-32 | 126 |
| Msa0971840 | AT3G12070.3 | 33.478 | 230 | 148 | 4 | 69 | 297 | 30 | 255 | 1.04e-32 | 126 |
| Msa0971840 | AT5G12210.2 | 30.189 | 265 | 175 | 4 | 36 | 297 | 1 | 258 | 1.82e-32 | 125 |
| Msa0971840 | AT2G39550.1 | 31.014 | 345 | 184 | 14 | 37 | 334 | 25 | 362 | 2.50e-32 | 127 |
| Msa0971840 | AT5G12210.1 | 30.827 | 266 | 173 | 5 | 36 | 297 | 1 | 259 | 6.70e-32 | 124 |
| Msa0971840 | AT3G12070.4 | 34.975 | 203 | 127 | 4 | 69 | 270 | 30 | 228 | 1.42e-27 | 110 |
Find 123 sgRNAs with CRISPR-Local
Find 466 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACATTTGTTAATCTTTC+AGG | 0.122390 | 6_4:+3956593 | None:intergenic |
| GTTACACCGTCGGTGCTTTC+TGG | 0.125204 | 6_4:+3956502 | None:intergenic |
| AGCAAGTATTCTAAACATTT+TGG | 0.155977 | 6_4:-3951369 | Msa0971840:CDS |
| AGGTAAGGAGTGTGGATTTC+AGG | 0.186356 | 6_4:-3950273 | Msa0971840:CDS |
| TCCTCTCTTTAATGTTGTTT+TGG | 0.194255 | 6_4:-3949320 | Msa0971840:CDS |
| GTCAATACTCTTGTTACTTT+GGG | 0.243540 | 6_4:-3952870 | Msa0971840:CDS |
| GTCGACCGTGGCTGTGTTAC+TGG | 0.250941 | 6_4:-3954970 | Msa0971840:CDS |
| GATCCAAATGGTGGATTTGC+TGG | 0.264529 | 6_4:-3953514 | Msa0971840:CDS |
| AAGCTTTGGCATCAATTAAT+AGG | 0.280924 | 6_4:-3952839 | Msa0971840:intron |
| TTGGAACATCACATAGAAAT+AGG | 0.303771 | 6_4:-3949192 | Msa0971840:three_prime_UTR |
| TTAGGTAATGGTGGAGAATC+TGG | 0.311383 | 6_4:+3949385 | None:intergenic |
| AAAGATTAACAAATGTTTAG+AGG | 0.313860 | 6_4:-3956589 | Msa0971840:five_prime_UTR |
| ATCTGATGCGCCTGACAAAA+AGG | 0.320622 | 6_4:-3950051 | Msa0971840:CDS |
| TTCAGGATTGGGCTGTATTT+CGG | 0.328902 | 6_4:-3950298 | Msa0971840:intron |
| GTCATGCAACTTCCCGTATC+AGG | 0.332838 | 6_4:-3950007 | Msa0971840:CDS |
| TCAGGGGAGAACGAATAAAT+TGG | 0.339111 | 6_4:-3950255 | Msa0971840:CDS |
| TATTCATGCAATTGCTTTGT+TGG | 0.345450 | 6_4:-3954945 | Msa0971840:CDS |
| ATTCTCAGAGATAAATTGTA+TGG | 0.348690 | 6_4:-3952681 | Msa0971840:intron |
| AGTCAATACTCTTGTTACTT+TGG | 0.356436 | 6_4:-3952871 | Msa0971840:CDS |
| GAAGCTCATGAATTCTTTAG+TGG | 0.362151 | 6_4:-3949286 | Msa0971840:CDS |
| ACATATGAGGGAGGCATTGC+TGG | 0.364574 | 6_4:-3950646 | Msa0971840:CDS |
| GGCGGATGAAACAGCCAAAT+GGG | 0.402834 | 6_4:-3952650 | Msa0971840:CDS |
| ATTCTTTAGTGGTTTGTAAC+TGG | 0.404343 | 6_4:-3949275 | Msa0971840:exon |
| GGAGGCATTGCTGGTGAGCC+TGG | 0.410790 | 6_4:-3950637 | Msa0971840:CDS |
| ATTCATGCAATTGCTTTGTT+GGG | 0.415981 | 6_4:-3954944 | Msa0971840:CDS |
| TGGATGGATGCTACTCGTTT+TGG | 0.416129 | 6_4:-3950232 | Msa0971840:CDS |
| ATGGATGGGTTCTAAGAGAT+TGG | 0.422639 | 6_4:+3949342 | None:intergenic |
| AGAAAACCAACTTACAGAAA+TGG | 0.423782 | 6_4:+3952220 | None:intergenic |
| TTTGGGTGGTGATAAAGCTT+TGG | 0.433407 | 6_4:-3952853 | Msa0971840:CDS |
| TTGCAGCTGTCAAACATATG+AGG | 0.438191 | 6_4:-3950659 | Msa0971840:intron |
| ACCTACCTTCACGCCTGATA+CGG | 0.438933 | 6_4:+3949994 | None:intergenic |
| CCATTACCTAAGGTAGTAAT+GGG | 0.438990 | 6_4:-3949373 | Msa0971840:CDS |
| TAACAGTTGCTTGCCTGGCC+AGG | 0.440801 | 6_4:+3953487 | None:intergenic |
| CATTCAACAGATAGAGCTCT+TGG | 0.447382 | 6_4:+3949235 | None:intergenic |
| CACTCGTGTTACTGTTTAAG+TGG | 0.449126 | 6_4:-3949442 | Msa0971840:CDS |
| TAAGGGACAAACCGGGTAAA+CGG | 0.449425 | 6_4:-3949477 | Msa0971840:CDS |
| TTTGATTTGGCCCTTCCAAA+GGG | 0.450569 | 6_4:-3949099 | Msa0971840:three_prime_UTR |
| GGCGCTTGGACAAACTATAC+TGG | 0.457392 | 6_4:+3949407 | None:intergenic |
| ATTTGATTTGGCCCTTCCAA+AGG | 0.458063 | 6_4:-3949100 | Msa0971840:three_prime_UTR |
| ATCTGTTATTGAAGAACAAA+TGG | 0.462163 | 6_4:-3950099 | Msa0971840:CDS |
| TAAGGACCCATTACTACCTT+AGG | 0.464021 | 6_4:+3949367 | None:intergenic |
| ATCCAAATGGTGGATTTGCT+GGG | 0.465107 | 6_4:-3953513 | Msa0971840:CDS |
| CGGCGGATGAAACAGCCAAA+TGG | 0.466773 | 6_4:-3952651 | Msa0971840:CDS |
| ACCATTACCTAAGGTAGTAA+TGG | 0.477052 | 6_4:-3949374 | Msa0971840:CDS |
| CGGTGGACTAAGGGACAAAC+CGG | 0.477303 | 6_4:-3949485 | Msa0971840:CDS |
| CTTTGACTCACCGTCGGTGA+TGG | 0.483468 | 6_4:+3956450 | None:intergenic |
| GGCTGTATTTCGGCAAGGTA+AGG | 0.483783 | 6_4:-3950288 | Msa0971840:CDS |
| GATTGGTGAGGCTAATAGCT+TGG | 0.485482 | 6_4:-3950426 | Msa0971840:CDS |
| AATACTCTTGTTACTTTGGG+TGG | 0.487775 | 6_4:-3952867 | Msa0971840:CDS |
| AACATTAAAGAGAGGATGGA+TGG | 0.489455 | 6_4:+3949327 | None:intergenic |
| GGTAAGGAGTGTGGATTTCA+GGG | 0.490322 | 6_4:-3950272 | Msa0971840:CDS |
| AGGAGCAAGACGGTGGACTA+AGG | 0.494162 | 6_4:-3949495 | Msa0971840:CDS |
| TGCTGGTGAGCCTGGTTCTG+AGG | 0.495541 | 6_4:-3950629 | Msa0971840:CDS |
| GTGAATCTTATGAACTTGCT+TGG | 0.495967 | 6_4:-3949135 | Msa0971840:three_prime_UTR |
| TACATGAGGGATTGAGCGTT+AGG | 0.496616 | 6_4:+3956366 | None:intergenic |
| GGTGTCTCCGCCGCAGATGA+AGG | 0.504108 | 6_4:+3956471 | None:intergenic |
| CATTGCAGCTAACCCACAAA+AGG | 0.514734 | 6_4:+3950454 | None:intergenic |
| TGGTGGAGAATCTGGGCGCT+TGG | 0.523920 | 6_4:+3949393 | None:intergenic |
| CCCATTACTACCTTAGGTAA+TGG | 0.524357 | 6_4:+3949373 | None:intergenic |
| TTATTCAGGATGCATGATGA+AGG | 0.524529 | 6_4:-3952272 | Msa0971840:intron |
| TAGTGATCCCTCCGTTTACC+CGG | 0.528287 | 6_4:+3949466 | None:intergenic |
| AAACAACATTAAAGAGAGGA+TGG | 0.528927 | 6_4:+3949323 | None:intergenic |
| TTAGCTGCAATGATTCTGAT+TGG | 0.529989 | 6_4:-3950443 | Msa0971840:CDS |
| GAGCCTGGTTCTGAGGCTCA+TGG | 0.530621 | 6_4:-3950622 | Msa0971840:CDS |
| CCTACCTTCACGCCTGATAC+GGG | 0.531625 | 6_4:+3949995 | None:intergenic |
| CGGTGAGTCAAAGAGATCAA+TGG | 0.532160 | 6_4:-3956440 | Msa0971840:CDS |
| AAAATGTAACATAAATGCAT+TGG | 0.536547 | 6_4:-3949211 | Msa0971840:three_prime_UTR |
| GTTATAACTTTATTAATGAG+TGG | 0.541872 | 6_4:-3949828 | Msa0971840:CDS |
| TCTAAAGGACTTCGCCATCT+CGG | 0.543236 | 6_4:-3955125 | Msa0971840:CDS |
| CCACCATGAGCCTCAGAACC+AGG | 0.543414 | 6_4:+3950619 | None:intergenic |
| CACATCGAGTATCTTTCTAA+AGG | 0.548427 | 6_4:-3955140 | Msa0971840:CDS |
| TAGGTAATGGTGGAGAATCT+GGG | 0.551089 | 6_4:+3949386 | None:intergenic |
| AAATGCCAACAGGATCCAAA+TGG | 0.555316 | 6_4:-3953526 | Msa0971840:intron |
| TTCTCAGAGATAAATTGTAT+GGG | 0.561141 | 6_4:-3952680 | Msa0971840:intron |
| GGTTCTAAGAGATTGGAGTA+AGG | 0.574336 | 6_4:+3949349 | None:intergenic |
| AGATTCTCCACCATTACCTA+AGG | 0.575023 | 6_4:-3949383 | Msa0971840:CDS |
| GGAGCAAGACGGTGGACTAA+GGG | 0.576325 | 6_4:-3949494 | Msa0971840:CDS |
| GGACAAACCGGGTAAACGGA+GGG | 0.577579 | 6_4:-3949473 | Msa0971840:CDS |
| TGATCTCTTTGACTCACCGT+CGG | 0.581992 | 6_4:+3956444 | None:intergenic |
| TGCAGCTGTCAAACATATGA+GGG | 0.587051 | 6_4:-3950658 | Msa0971840:intron |
| TATTGAAGAACAAATGGTAG+AGG | 0.587201 | 6_4:-3950093 | Msa0971840:CDS |
| GATGAGCTGATCAAGAATGT+TGG | 0.587709 | 6_4:-3951344 | Msa0971840:CDS |
| ATGAGGGATTGAGCGTTAGG+AGG | 0.587858 | 6_4:+3956369 | None:intergenic |
| GTGGTTTGTAACTGGTGACA+TGG | 0.592157 | 6_4:-3949267 | Msa0971840:exon |
| GGGGAGAACGAATAAATTGG+TGG | 0.592201 | 6_4:-3950252 | Msa0971840:CDS |
| TGATTTGGCCCTTCCAAAGG+GGG | 0.593092 | 6_4:-3949097 | Msa0971840:three_prime_UTR |
| AGAACGAATAAATTGGTGGA+TGG | 0.594828 | 6_4:-3950248 | Msa0971840:CDS |
| GCGGATGAAACAGCCAAATG+GGG | 0.595698 | 6_4:-3952649 | Msa0971840:CDS |
| GCATAAGTTGTGGCAAGATG+AGG | 0.596253 | 6_4:+3952897 | None:intergenic |
| TTTCGGCAAGGTAAGGAGTG+TGG | 0.597905 | 6_4:-3950281 | Msa0971840:CDS |
| TGCCAACAGGATCCAAATGG+TGG | 0.598194 | 6_4:-3953523 | Msa0971840:intron |
| CTGGTTCTGAGGCTCATGGT+GGG | 0.601092 | 6_4:-3950618 | Msa0971840:intron |
| TGGAAGGGCCAAATCAAATG+AGG | 0.606077 | 6_4:+3949104 | None:intergenic |
| ATAAATTGTATGGGTTTATG+CGG | 0.607119 | 6_4:-3952671 | Msa0971840:CDS |
| CCTGGTTCTGAGGCTCATGG+TGG | 0.607455 | 6_4:-3950619 | Msa0971840:CDS |
| AATTGTATGGGTTTATGCGG+CGG | 0.609438 | 6_4:-3952668 | Msa0971840:CDS |
| AGCACCGACGGTGTAACCGA+TGG | 0.609679 | 6_4:-3956496 | Msa0971840:exon |
| TCCAAATGGTGGATTTGCTG+GGG | 0.615373 | 6_4:-3953512 | Msa0971840:CDS |
| AAATAAAATAAACCTGGCAA+CGG | 0.617415 | 6_4:+3954873 | None:intergenic |
| ATTACTACCTTAGGTAATGG+TGG | 0.619462 | 6_4:+3949376 | None:intergenic |
| TCCAAAACAACATTAAAGAG+AGG | 0.621526 | 6_4:+3949319 | None:intergenic |
| GATTGGGCTGTATTTCGGCA+AGG | 0.622139 | 6_4:-3950293 | Msa0971840:CDS |
| GCCGCAGATGAAGGTTCCAT+CGG | 0.623012 | 6_4:+3956480 | None:intergenic |
| GGTTCCATCGGTTACACCGT+CGG | 0.626891 | 6_4:+3956492 | None:intergenic |
| ATTGACTGCAGCATAAGTTG+TGG | 0.634458 | 6_4:+3952887 | None:intergenic |
| ACATTAAAGAGAGGATGGAT+GGG | 0.635861 | 6_4:+3949328 | None:intergenic |
| GGGACAAACCGGGTAAACGG+AGG | 0.636900 | 6_4:-3949474 | Msa0971840:CDS |
| ACTTCCCGTATCAGGCGTGA+AGG | 0.637896 | 6_4:-3949999 | Msa0971840:intron |
| ACCGATGGAACCTTCATCTG+CGG | 0.654444 | 6_4:-3956481 | Msa0971840:exon |
| CGGATGAAACAGCCAAATGG+GGG | 0.660719 | 6_4:-3952648 | Msa0971840:CDS |
| GGCGGAGACACCATCACCGA+CGG | 0.661023 | 6_4:-3956460 | Msa0971840:CDS |
| GATGGAACCTTCATCTGCGG+CGG | 0.662039 | 6_4:-3956478 | Msa0971840:CDS |
| CCAAATGGTGGATTTGCTGG+GGG | 0.667430 | 6_4:-3953511 | Msa0971840:CDS |
| GTTTATGGTGCAGTCGACCG+TGG | 0.667854 | 6_4:-3954982 | Msa0971840:intron |
| TCAGTTCCAGAAAGCACCGA+CGG | 0.671925 | 6_4:-3956508 | Msa0971840:five_prime_UTR |
| TGCAATGATTCTGATTGGTG+AGG | 0.672025 | 6_4:-3950438 | Msa0971840:CDS |
| AGCTGTCAAACATATGAGGG+AGG | 0.689606 | 6_4:-3950655 | Msa0971840:CDS |
| TTGATTTGGCCCTTCCAAAG+GGG | 0.690905 | 6_4:-3949098 | Msa0971840:three_prime_UTR |
| TTGATGCAGGAGCAAGACGG+TGG | 0.694884 | 6_4:-3949502 | Msa0971840:intron |
| GGTGGACTAAGGGACAAACC+GGG | 0.696032 | 6_4:-3949484 | Msa0971840:CDS |
| GTAAGGAGTGTGGATTTCAG+GGG | 0.704839 | 6_4:-3950271 | Msa0971840:CDS |
| ATAATCCAGTAACACAGCCA+CGG | 0.706640 | 6_4:+3954965 | None:intergenic |
| TGATTGATGCAGGAGCAAGA+CGG | 0.744961 | 6_4:-3949505 | Msa0971840:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTTGAAAACTATTA+TGG | + | chr6_4:3952673-3952692 | None:intergenic | 10.0% |
| !! | AGATAAAATAAAATGAATAT+GGG | + | chr6_4:3953107-3953126 | None:intergenic | 10.0% |
| !! | AATTGAAATATTAATATAGT+AGG | + | chr6_4:3953980-3953999 | None:intergenic | 10.0% |
| !! | TACACAAAATAATAAAAAAA+TGG | + | chr6_4:3954853-3954872 | None:intergenic | 10.0% |
| !! | AAAAAAAAATATTGTTGAAG+AGG | + | chr6_4:3949993-3950012 | None:intergenic | 15.0% |
| !! | ATATGAAAATAAAATAAACC+TGG | + | chr6_4:3950803-3950822 | None:intergenic | 15.0% |
| !!! | AATTTTATGAAATGGAAAAA+TGG | + | chr6_4:3951006-3951025 | None:intergenic | 15.0% |
| !!! | CTGAAATTAATTTTATGAAA+TGG | + | chr6_4:3951014-3951033 | None:intergenic | 15.0% |
| !! | ATTAAGATATAAGGATTAAA+AGG | + | chr6_4:3951128-3951147 | None:intergenic | 15.0% |
| !!! | ATTTTTAAAACTTAGTGTAT+GGG | - | chr6_4:3951806-3951825 | Msa0971840:intron | 15.0% |
| !! | ATTATACTTAAAACTAACTA+TGG | + | chr6_4:3952338-3952357 | None:intergenic | 15.0% |
| !! | CAGATAAAATAAAATGAATA+TGG | + | chr6_4:3953108-3953127 | None:intergenic | 15.0% |
| !!! | CATATTCATTTTATTTTATC+TGG | - | chr6_4:3953106-3953125 | Msa0971840:intron | 15.0% |
| !!! | TTATACTAGTTTTTTTGTTT+TGG | - | chr6_4:3953559-3953578 | Msa0971840:intron | 15.0% |
| !!! | TATACTAGTTTTTTTGTTTT+GGG | - | chr6_4:3953560-3953579 | Msa0971840:intron | 15.0% |
| !! | AGTTATACTAGTTATTATAA+TGG | - | chr6_4:3953583-3953602 | Msa0971840:intron | 15.0% |
| !!! | TTATTATTTTGTGTATTTGA+AGG | - | chr6_4:3954858-3954877 | Msa0971840:intron | 15.0% |
| !!! | TTTTACTATTTTTCTTTATC+AGG | - | chr6_4:3955186-3955205 | Msa0971840:intron | 15.0% |
| !! | AAATGTCAAAAAAACATTAT+TGG | - | chr6_4:3956498-3956517 | Msa0971840:exon | 15.0% |
| !! | AAAGATTAACAAATGTTTAG+AGG | - | chr6_4:3949078-3949097 | Msa0971840:three_prime_UTR | 20.0% |
| !!! | TATAATTTTCTCTTTGTTCA+TGG | - | chr6_4:3949390-3949409 | Msa0971840:CDS | 20.0% |
| !! | CATTAACTGCTATAATTATT+CGG | + | chr6_4:3949542-3949561 | None:intergenic | 20.0% |
| !!! | TGTCAAATAAGTTTGTTAAT+AGG | - | chr6_4:3949695-3949714 | Msa0971840:intron | 20.0% |
| !!! | TCTCAAAAAAGTTTGTTAAT+AGG | - | chr6_4:3949811-3949830 | Msa0971840:CDS | 20.0% |
| !! | TAATTGAATGTAACATGTTT+CGG | + | chr6_4:3950094-3950113 | None:intergenic | 20.0% |
| !!! | GTCATATAAAGTTTGTTAAT+AGG | - | chr6_4:3950425-3950444 | Msa0971840:CDS | 20.0% |
| !!! | AAAAAAATGAAGTGTTTTTG+TGG | - | chr6_4:3950663-3950682 | Msa0971840:intron | 20.0% |
| !! | AATGTCTACATTAAGATATA+AGG | + | chr6_4:3951137-3951156 | None:intergenic | 20.0% |
| !!! | TGTAGACATTTGTATATTTT+AGG | - | chr6_4:3951299-3951318 | Msa0971840:intron | 20.0% |
| !! | TCATATTTGATATTTCACAA+TGG | + | chr6_4:3951345-3951364 | None:intergenic | 20.0% |
| !! | TAGATATCATGAAATATGAT+TGG | + | chr6_4:3951496-3951515 | None:intergenic | 20.0% |
| !!! | AAAAATCATCGAAGTTTTTT+AGG | + | chr6_4:3951792-3951811 | None:intergenic | 20.0% |
| !!! | GATTTTTAAAACTTAGTGTA+TGG | - | chr6_4:3951805-3951824 | Msa0971840:intron | 20.0% |
| !! | ATAACTCAATCAACAAAATT+GGG | + | chr6_4:3952549-3952568 | None:intergenic | 20.0% |
| !! | TATAACTCAATCAACAAAAT+TGG | + | chr6_4:3952550-3952569 | None:intergenic | 20.0% |
| !! | CGAACAATTAAAGAATATAA+AGG | + | chr6_4:3952707-3952726 | None:intergenic | 20.0% |
| !! | AATCTCTTATTGTTAATTGA+AGG | + | chr6_4:3953076-3953095 | None:intergenic | 20.0% |
| !!! | AATCATCAAATGTTTTATTC+AGG | - | chr6_4:3953381-3953400 | Msa0971840:intron | 20.0% |
| !! | ACTAGTTATTATAATGGTAT+TGG | - | chr6_4:3953589-3953608 | Msa0971840:intron | 20.0% |
| !! | AGACAACATTGTAAAAATAT+AGG | + | chr6_4:3953915-3953934 | None:intergenic | 20.0% |
| !! | AATATAGTAGGTAACTTAAA+GGG | + | chr6_4:3953968-3953987 | None:intergenic | 20.0% |
| !! | TAATATAGTAGGTAACTTAA+AGG | + | chr6_4:3953969-3953988 | None:intergenic | 20.0% |
| !! | AAACACAAGAAAATAAACAT+GGG | + | chr6_4:3954003-3954022 | None:intergenic | 20.0% |
| !! | AAAACACAAGAAAATAAACA+TGG | + | chr6_4:3954004-3954023 | None:intergenic | 20.0% |
| !! | TACCAGTGTTTATAATTTAA+AGG | + | chr6_4:3954637-3954656 | None:intergenic | 20.0% |
| !! | CAAATAATATAATTGTGAAG+AGG | + | chr6_4:3955124-3955143 | None:intergenic | 20.0% |
| !! | CTCTTCACAATTATATTATT+TGG | - | chr6_4:3955122-3955141 | Msa0971840:CDS | 20.0% |
| !! | AATAAGATAACTTATCATGA+GGG | + | chr6_4:3955165-3955184 | None:intergenic | 20.0% |
| !! | AAATAAGATAACTTATCATG+AGG | + | chr6_4:3955166-3955185 | None:intergenic | 20.0% |
| !! | AAAAAGTTCATAAAACTAGT+GGG | + | chr6_4:3955312-3955331 | None:intergenic | 20.0% |
| !! | TAAAAAGTTCATAAAACTAG+TGG | + | chr6_4:3955313-3955332 | None:intergenic | 20.0% |
| !!! | TAAAAACATGAAAGTATTCA+GGG | - | chr6_4:3955515-3955534 | Msa0971840:intron | 20.0% |
| !! | TTTAAATTCTAATTCTTGCA+GGG | - | chr6_4:3955779-3955798 | Msa0971840:intron | 20.0% |
| !! | TCATCTGATGTTAAAAATAT+TGG | - | chr6_4:3955817-3955836 | Msa0971840:intron | 20.0% |
| !! | GTTATAACTTTATTAATGAG+TGG | - | chr6_4:3955839-3955858 | Msa0971840:intron | 20.0% |
| !!! | AGTTTTTACATTTTCTACAT+TGG | - | chr6_4:3955931-3955950 | Msa0971840:intron | 20.0% |
| !! | GAAAGAAATGAAAAAACATA+AGG | + | chr6_4:3955971-3955990 | None:intergenic | 20.0% |
| !! | AAAATGTAACATAAATGCAT+TGG | - | chr6_4:3956456-3956475 | Msa0971840:CDS | 20.0% |
| ! | CGAATAATTATAGCAGTTAA+TGG | - | chr6_4:3949540-3949559 | Msa0971840:intron | 25.0% |
| ! | ATTGAATGTAATGACATGTT+CGG | + | chr6_4:3949665-3949684 | None:intergenic | 25.0% |
| ! | TTGAGAATTAGAACTCAATT+GGG | - | chr6_4:3949844-3949863 | Msa0971840:CDS | 25.0% |
| !!! | GTTATATTTGTTATCTCAGT+AGG | - | chr6_4:3950035-3950054 | Msa0971840:CDS | 25.0% |
| ! | TCTCAAATAAGTTTGTGAAT+AGG | - | chr6_4:3950122-3950141 | Msa0971840:CDS | 25.0% |
| !!! | TAATGACATTGTTTTGGTAT+TGG | + | chr6_4:3950243-3950262 | None:intergenic | 25.0% |
| !! | TGTATGTAATGACATTGTTT+TGG | + | chr6_4:3950249-3950268 | None:intergenic | 25.0% |
| ! | TGCATTATGTACAGATTTAA+TGG | - | chr6_4:3950376-3950395 | Msa0971840:intron | 25.0% |
| ! | AACAAACTTTATATGACATC+AGG | + | chr6_4:3950422-3950441 | None:intergenic | 25.0% |
| ! | AAATAAAATAAACCTGGCAA+CGG | + | chr6_4:3950797-3950816 | None:intergenic | 25.0% |
| ! | AAATAAAACCTTCATACCAT+CGG | + | chr6_4:3950891-3950910 | None:intergenic | 25.0% |
| ! | CAGAATACTCTTATAAAAGT+CGG | - | chr6_4:3951031-3951050 | Msa0971840:intron | 25.0% |
| ! | TTAACCGAAAATGAAAACTA+AGG | - | chr6_4:3951592-3951611 | Msa0971840:intron | 25.0% |
| !!! | TCTTCCTTAGTTTTCATTTT+CGG | + | chr6_4:3951599-3951618 | None:intergenic | 25.0% |
| !!! | AATGAACATTGTTGTTTTGA+TGG | - | chr6_4:3951674-3951693 | Msa0971840:intron | 25.0% |
| !!! | ATGAACATTGTTGTTTTGAT+GGG | - | chr6_4:3951675-3951694 | Msa0971840:intron | 25.0% |
| ! | CATAAAACATCACAACTAAA+TGG | + | chr6_4:3952037-3952056 | None:intergenic | 25.0% |
| !!! | TATGTTATTTGCTTTAAGAG+AGG | - | chr6_4:3952053-3952072 | Msa0971840:intron | 25.0% |
| ! | AAAACAAGAGATTCATAAAG+AGG | + | chr6_4:3952119-3952138 | None:intergenic | 25.0% |
| !! | AACTATGGTATTAGTTTCTA+TGG | + | chr6_4:3952323-3952342 | None:intergenic | 25.0% |
| ! | GAAACTTATTCAACTGAATT+TGG | + | chr6_4:3952504-3952523 | None:intergenic | 25.0% |
| ! | TAACTCAATCAACAAAATTG+GGG | + | chr6_4:3952548-3952567 | None:intergenic | 25.0% |
| !! | ATTCTGTCTTATCTTTTGTT+CGG | - | chr6_4:3952888-3952907 | Msa0971840:CDS | 25.0% |
| ! | ATTCTCAGAGATAAATTGTA+TGG | - | chr6_4:3952986-3953005 | Msa0971840:intron | 25.0% |
| ! | TTCTCAGAGATAAATTGTAT+GGG | - | chr6_4:3952987-3953006 | Msa0971840:intron | 25.0% |
| ! | ATAAATTGTATGGGTTTATG+CGG | - | chr6_4:3952996-3953015 | Msa0971840:intron | 25.0% |
| ! | CTTATTGTTAATTGAAGGTA+CGG | + | chr6_4:3953071-3953090 | None:intergenic | 25.0% |
| ! | AAAATAAAATGAATATGGGC+AGG | + | chr6_4:3953103-3953122 | None:intergenic | 25.0% |
| ! | AACATTACCAAATCAAAATC+TGG | + | chr6_4:3953189-3953208 | None:intergenic | 25.0% |
| !!! | TTTTGATTTGGTAATGTTTG+TGG | - | chr6_4:3953191-3953210 | Msa0971840:intron | 25.0% |
| !!! | TTTGATTTGGTAATGTTTGT+GGG | - | chr6_4:3953192-3953211 | Msa0971840:intron | 25.0% |
| ! | TTATCCTGCACAAATTTAAA+TGG | - | chr6_4:3953241-3953260 | Msa0971840:intron | 25.0% |
| !! | TATTATAATGGTATTGGACA+TGG | - | chr6_4:3953595-3953614 | Msa0971840:intron | 25.0% |
| ! | TGTAAAAATATAGGCTTTCA+AGG | + | chr6_4:3953906-3953925 | None:intergenic | 25.0% |
| !! | ACAATGTTGTCTTTTTCTTA+AGG | - | chr6_4:3953923-3953942 | Msa0971840:intron | 25.0% |
| !! | CAATGTTGTCTTTTTCTTAA+GGG | - | chr6_4:3953924-3953943 | Msa0971840:intron | 25.0% |
| ! | ATGAAAATCATAGAGGATAA+CGG | + | chr6_4:3954194-3954213 | None:intergenic | 25.0% |
| ! | AGATATCTATTTCATAACAC+TGG | - | chr6_4:3954255-3954274 | Msa0971840:intron | 25.0% |
| ! | GATATCTATTTCATAACACT+GGG | - | chr6_4:3954256-3954275 | Msa0971840:intron | 25.0% |
| !! | AGCAAGTATTCTAAACATTT+TGG | - | chr6_4:3954298-3954317 | Msa0971840:intron | 25.0% |
| ! | ATAATATTGTACAATCAAGC+TGG | + | chr6_4:3954419-3954438 | None:intergenic | 25.0% |
| !! | CATTTGAGAAAAAGTTTTCA+AGG | - | chr6_4:3954577-3954596 | Msa0971840:intron | 25.0% |
| ! | GACCTTTAAATTATAAACAC+TGG | - | chr6_4:3954632-3954651 | Msa0971840:intron | 25.0% |
| ! | AACCATTAGATTAGCAAAAA+CGG | + | chr6_4:3954723-3954742 | None:intergenic | 25.0% |
| !! | TTTTGCTAATCTAATGGTTT+TGG | - | chr6_4:3954724-3954743 | Msa0971840:intron | 25.0% |
| ! | ATAAAAAAATGGAGAGAACT+CGG | + | chr6_4:3954842-3954861 | None:intergenic | 25.0% |
| ! | TATAAAGAGAAATGAGAGAA+GGG | + | chr6_4:3955101-3955120 | None:intergenic | 25.0% |
| !! | AATTTTCTTACAAGTAAACG+AGG | + | chr6_4:3955272-3955291 | None:intergenic | 25.0% |
| !! | AAGAAAATTGCTCTTTTTAG+TGG | - | chr6_4:3955283-3955302 | Msa0971840:intron | 25.0% |
| ! | AAATTATGTTTCCTTTCTTC+AGG | - | chr6_4:3955352-3955371 | Msa0971840:intron | 25.0% |
| !!! | CTAAAAACATGAAAGTATTC+AGG | - | chr6_4:3955514-3955533 | Msa0971840:intron | 25.0% |
| ! | ATCTGTTATTGAAGAACAAA+TGG | - | chr6_4:3955568-3955587 | Msa0971840:intron | 25.0% |
| ! | CTTTAAATTCTAATTCTTGC+AGG | - | chr6_4:3955778-3955797 | Msa0971840:intron | 25.0% |
| !! | ATTTTTAACATCAGATGAAC+AGG | + | chr6_4:3955815-3955834 | None:intergenic | 25.0% |
| !! | ATATATTCTTTTATGTGCAC+AGG | - | chr6_4:3955903-3955922 | Msa0971840:intron | 25.0% |
| ! | TTTCCATTTCAAACTGTTAA+GGG | + | chr6_4:3956013-3956032 | None:intergenic | 25.0% |
| ! | ATTTCCATTTCAAACTGTTA+AGG | + | chr6_4:3956014-3956033 | None:intergenic | 25.0% |
| ! | GTCAAAAAAACATTATTGGA+TGG | - | chr6_4:3956502-3956521 | Msa0971840:five_prime_UTR | 25.0% |
| !! | TTTTCATTCCTCATTTGATT+TGG | - | chr6_4:3956555-3956574 | Msa0971840:five_prime_UTR | 25.0% |
| ! | GTTTTCTCATTAAGAGATCT+GGG | + | chr6_4:3949104-3949123 | None:intergenic | 30.0% |
| ! | TGTTTTCTCATTAAGAGATC+TGG | + | chr6_4:3949105-3949124 | None:intergenic | 30.0% |
| CTGACAGTGTAAAAATTGAA+CGG | + | chr6_4:3949143-3949162 | None:intergenic | 30.0% | |
| TACTGACATGTTTCAATGTT+GGG | + | chr6_4:3949773-3949792 | None:intergenic | 30.0% | |
| CTTGAGAATTAGAACTCAAT+TGG | - | chr6_4:3949843-3949862 | Msa0971840:CDS | 30.0% | |
| !! | ATGTTTTATTCCTCTTTCGT+GGG | - | chr6_4:3950344-3950363 | Msa0971840:intron | 30.0% |
| ! | TCTTCTTCATTTTACGTTTC+AGG | - | chr6_4:3950483-3950502 | Msa0971840:intron | 30.0% |
| !! | TGAAGTGTTTTTGTGGTTTA+TGG | - | chr6_4:3950670-3950689 | Msa0971840:intron | 30.0% |
| TATTCATGCAATTGCTTTGT+TGG | - | chr6_4:3950722-3950741 | Msa0971840:intron | 30.0% | |
| ! | ATTCATGCAATTGCTTTGTT+GGG | - | chr6_4:3950723-3950742 | Msa0971840:intron | 30.0% |
| ATTTAATTGCTATACACCGA+TGG | - | chr6_4:3950872-3950891 | Msa0971840:intron | 30.0% | |
| GAAAAATGGTTGTCACAAAT+TGG | + | chr6_4:3950992-3951011 | None:intergenic | 30.0% | |
| CTTATAAAAGTCGGATGATT+TGG | - | chr6_4:3951040-3951059 | Msa0971840:intron | 30.0% | |
| GATTTGGCAAAATACTGAAT+TGG | - | chr6_4:3951056-3951075 | Msa0971840:intron | 30.0% | |
| !!! | TTATTTTATGATTGGCCTAG+TGG | - | chr6_4:3951163-3951182 | Msa0971840:intron | 30.0% |
| TACTCGTTATTACAACATAG+TGG | + | chr6_4:3951267-3951286 | None:intergenic | 30.0% | |
| ! | GACATTGTGCAAATATTTTG+CGG | + | chr6_4:3951388-3951407 | None:intergenic | 30.0% |
| TGTGAGTCTTTAGATTATCT+TGG | - | chr6_4:3951555-3951574 | Msa0971840:intron | 30.0% | |
| AAGGAAATGAATTTCCAATG+TGG | + | chr6_4:3951630-3951649 | None:intergenic | 30.0% | |
| ! | CTTCAAGTTATTCTTGTTCA+AGG | + | chr6_4:3951649-3951668 | None:intergenic | 30.0% |
| GTTAAATGCATGTGTAATCA+TGG | - | chr6_4:3951757-3951776 | Msa0971840:intron | 30.0% | |
| GAGGTAGATATGTGATAATA+AGG | + | chr6_4:3952100-3952119 | None:intergenic | 30.0% | |
| ATAGATGTTCAACTAGAACT+AGG | + | chr6_4:3952216-3952235 | None:intergenic | 30.0% | |
| TTTCTATGGATATGCATAAG+AGG | + | chr6_4:3952309-3952328 | None:intergenic | 30.0% | |
| AGACAATGAGAATATGTCAA+AGG | - | chr6_4:3952407-3952426 | Msa0971840:intron | 30.0% | |
| GACAATGAGAATATGTCAAA+GGG | - | chr6_4:3952408-3952427 | Msa0971840:intron | 30.0% | |
| AACTCAATCAACAAAATTGG+GGG | + | chr6_4:3952547-3952566 | None:intergenic | 30.0% | |
| TACATGGAATATGCATTACA+TGG | + | chr6_4:3952603-3952622 | None:intergenic | 30.0% | |
| ! | AGTCAATACTCTTGTTACTT+TGG | - | chr6_4:3952796-3952815 | Msa0971840:intron | 30.0% |
| !! | GTCAATACTCTTGTTACTTT+GGG | - | chr6_4:3952797-3952816 | Msa0971840:intron | 30.0% |
| ! | AAGCTTTGGCATCAATTAAT+AGG | - | chr6_4:3952828-3952847 | Msa0971840:intron | 30.0% |
| !! | TTGATTTGGTAATGTTTGTG+GGG | - | chr6_4:3953193-3953212 | Msa0971840:intron | 30.0% |
| TGACGCATTCAGAATTTATT+TGG | - | chr6_4:3953318-3953337 | Msa0971840:intron | 30.0% | |
| GACGCATTCAGAATTTATTT+GGG | - | chr6_4:3953319-3953338 | Msa0971840:intron | 30.0% | |
| ACGCATTCAGAATTTATTTG+GGG | - | chr6_4:3953320-3953339 | Msa0971840:intron | 30.0% | |
| AGAAAACCAACTTACAGAAA+TGG | + | chr6_4:3953450-3953469 | None:intergenic | 30.0% | |
| TAACAAGTAATATGCTATCC+AGG | + | chr6_4:3953621-3953640 | None:intergenic | 30.0% | |
| TGGATAGCATATTACTTGTT+AGG | - | chr6_4:3953620-3953639 | Msa0971840:intron | 30.0% | |
| ! | TATTACTTGTTAGGAATGAC+AGG | - | chr6_4:3953629-3953648 | Msa0971840:intron | 30.0% |
| AAGAAAACACAGAAGAAAGT+GGG | + | chr6_4:3954041-3954060 | None:intergenic | 30.0% | |
| GCTATATGAGATTAACAAGA+TGG | - | chr6_4:3954152-3954171 | Msa0971840:intron | 30.0% | |
| ! | ATCCTCTATGATTTTCATTG+TGG | - | chr6_4:3954196-3954215 | Msa0971840:intron | 30.0% |
| ! | TCCTCTATGATTTTCATTGT+GGG | - | chr6_4:3954197-3954216 | Msa0971840:intron | 30.0% |
| ! | ATGTTGGAGACTTCATTTTA+AGG | - | chr6_4:3954339-3954358 | Msa0971840:intron | 30.0% |
| ACACTGGTAACAATTAAAAG+TGG | - | chr6_4:3954648-3954667 | Msa0971840:intron | 30.0% | |
| TGCTATGTACAATAGTTCTT+TGG | - | chr6_4:3954903-3954922 | Msa0971840:CDS | 30.0% | |
| GTATAAAGAGAAATGAGAGA+AGG | + | chr6_4:3955102-3955121 | None:intergenic | 30.0% | |
| ! | TTTATCAGGTATACCTTTTG+TGG | - | chr6_4:3955200-3955219 | Msa0971840:intron | 30.0% |
| ! | TTATCAGGTATACCTTTTGT+GGG | - | chr6_4:3955201-3955220 | Msa0971840:intron | 30.0% |
| TATTGAAGAACAAATGGTAG+AGG | - | chr6_4:3955574-3955593 | Msa0971840:intron | 30.0% | |
| TCGTTCTATATTCAGTTCTT+AGG | - | chr6_4:3955741-3955760 | Msa0971840:intron | 30.0% | |
| AATTCTTCGATAAGATGCAA+TGG | + | chr6_4:3956048-3956067 | None:intergenic | 30.0% | |
| TACATATGTAGATGCTTAAG+AGG | - | chr6_4:3956105-3956124 | Msa0971840:intron | 30.0% | |
| AAACAACATTAAAGAGAGGA+TGG | + | chr6_4:3956347-3956366 | None:intergenic | 30.0% | |
| !! | TCCTCTCTTTAATGTTGTTT+TGG | - | chr6_4:3956347-3956366 | Msa0971840:intron | 30.0% |
| TCCAAAACAACATTAAAGAG+AGG | + | chr6_4:3956351-3956370 | None:intergenic | 30.0% | |
| ! | ATTCTTTAGTGGTTTGTAAC+TGG | - | chr6_4:3956392-3956411 | Msa0971840:CDS | 30.0% |
| TTGGAACATCACATAGAAAT+AGG | - | chr6_4:3956475-3956494 | Msa0971840:CDS | 30.0% | |
| GAGAGAAGATAGTTACATGA+GGG | + | chr6_4:3949317-3949336 | None:intergenic | 35.0% | |
| AGAGAGAAGATAGTTACATG+AGG | + | chr6_4:3949318-3949337 | None:intergenic | 35.0% | |
| ! | GTACTGACATGTTTCAATGT+TGG | + | chr6_4:3949774-3949793 | None:intergenic | 35.0% |
| GAATTAGAACTCAATTGGGT+TGG | - | chr6_4:3949848-3949867 | Msa0971840:CDS | 35.0% | |
| TAGTTTGACCTCTTCAACAT+TGG | - | chr6_4:3949954-3949973 | Msa0971840:intron | 35.0% | |
| ! | AATGTAACATGTTTCGGTGT+CGG | + | chr6_4:3950088-3950107 | None:intergenic | 35.0% |
| !! | CATGTTTTATTCCTCTTTCG+TGG | - | chr6_4:3950343-3950362 | Msa0971840:intron | 35.0% |
| ! | CAGATTTAATGGATGATACC+TGG | - | chr6_4:3950387-3950406 | Msa0971840:intron | 35.0% |
| TAGGCAGTTAAGAGTTAGTT+AGG | - | chr6_4:3950444-3950463 | Msa0971840:CDS | 35.0% | |
| !! | CTTCATTTTACGTTTCAGGT+TGG | - | chr6_4:3950487-3950506 | Msa0971840:intron | 35.0% |
| CACATCGAGTATCTTTCTAA+AGG | - | chr6_4:3950527-3950546 | Msa0971840:intron | 35.0% | |
| GTTATTACAACATAGTGGCT+TGG | + | chr6_4:3951262-3951281 | None:intergenic | 35.0% | |
| CATCTCAGTTCTTGATATTG+CGG | - | chr6_4:3951725-3951744 | Msa0971840:intron | 35.0% | |
| CACAACTAAATGGATCATCT+GGG | + | chr6_4:3952027-3952046 | None:intergenic | 35.0% | |
| TCACAACTAAATGGATCATC+TGG | + | chr6_4:3952028-3952047 | None:intergenic | 35.0% | |
| !! | CTTGTTTTTCAAATGCCAAC+AGG | - | chr6_4:3952131-3952150 | Msa0971840:intron | 35.0% |
| AATGAGAATATGTCAAAGGG+TGG | - | chr6_4:3952411-3952430 | Msa0971840:intron | 35.0% | |
| TTCAGTTGTGTGAAGTATGA+AGG | - | chr6_4:3952458-3952477 | Msa0971840:intron | 35.0% | |
| TGCATATTCCATGTATCTGT+TGG | - | chr6_4:3952608-3952627 | Msa0971840:intron | 35.0% | |
| GCATATTCCATGTATCTGTT+GGG | - | chr6_4:3952609-3952628 | Msa0971840:intron | 35.0% | |
| AAATTGACCCAACAGATACA+TGG | + | chr6_4:3952619-3952638 | None:intergenic | 35.0% | |
| AAAACTATTATGGTCCTTCC+AGG | + | chr6_4:3952663-3952682 | None:intergenic | 35.0% | |
| !! | AATACTCTTGTTACTTTGGG+TGG | - | chr6_4:3952800-3952819 | Msa0971840:intron | 35.0% |
| CTTTGGCATCAATTAATAGG+TGG | - | chr6_4:3952831-3952850 | Msa0971840:intron | 35.0% | |
| GAGTTCTGTTCTCTTGTATT+TGG | - | chr6_4:3952933-3952952 | Msa0971840:intron | 35.0% | |
| TTATTCAGGATGCATGATGA+AGG | - | chr6_4:3953395-3953414 | Msa0971840:intron | 35.0% | |
| TGCTATAGTATGCTTTGTAG+TGG | + | chr6_4:3953699-3953718 | None:intergenic | 35.0% | |
| TTTGTCACATTCGCGAATTA+CGG | - | chr6_4:3953786-3953805 | Msa0971840:intron | 35.0% | |
| TAGTAGGTAACTTAAAGGGT+TGG | + | chr6_4:3953964-3953983 | None:intergenic | 35.0% | |
| AGAAAACACAGAAGAAAGTG+GGG | + | chr6_4:3954040-3954059 | None:intergenic | 35.0% | |
| GAAGAAAACACAGAAGAAAG+TGG | + | chr6_4:3954042-3954061 | None:intergenic | 35.0% | |
| TCCCACAATGAAAATCATAG+AGG | + | chr6_4:3954201-3954220 | None:intergenic | 35.0% | |
| ! | TCTATGATTTTCATTGTGGG+AGG | - | chr6_4:3954200-3954219 | Msa0971840:intron | 35.0% |
| ! | CTATGATTTTCATTGTGGGA+GGG | - | chr6_4:3954201-3954220 | Msa0971840:intron | 35.0% |
| ! | TATGATTTTCATTGTGGGAG+GGG | - | chr6_4:3954202-3954221 | Msa0971840:intron | 35.0% |
| ! | AACACTTTTAATGCTAAGGC+TGG | - | chr6_4:3954225-3954244 | Msa0971840:intron | 35.0% |
| ! | TGTTTAGAATACTTGCTACC+TGG | + | chr6_4:3954295-3954314 | None:intergenic | 35.0% |
| CACTCAAGAATCAAAGTTGT+AGG | + | chr6_4:3954515-3954534 | None:intergenic | 35.0% | |
| CTACAACTTTGATTCTTGAG+TGG | - | chr6_4:3954513-3954532 | Msa0971840:intron | 35.0% | |
| TCCTCAAGTTCAATTTGCAA+CGG | - | chr6_4:3954539-3954558 | Msa0971840:intron | 35.0% | |
| AGGATCTCTTTACAATTCTG+TGG | - | chr6_4:3954597-3954616 | Msa0971840:intron | 35.0% | |
| GGATCTCTTTACAATTCTGT+GGG | - | chr6_4:3954598-3954617 | Msa0971840:intron | 35.0% | |
| GATCTCTTTACAATTCTGTG+GGG | - | chr6_4:3954599-3954618 | Msa0971840:intron | 35.0% | |
| TAATTTAAAGGTCACGTGTG+AGG | + | chr6_4:3954625-3954644 | None:intergenic | 35.0% | |
| AGTGGTATTAGTCATGACTT+TGG | - | chr6_4:3954666-3954685 | Msa0971840:intron | 35.0% | |
| !! | CTCCGTTTTTGCTAATCTAA+TGG | - | chr6_4:3954718-3954737 | Msa0971840:intron | 35.0% |
| !!! | ATCTAATGGTTTTGGCAACA+AGG | - | chr6_4:3954732-3954751 | Msa0971840:intron | 35.0% |
| ! | CCTTTGGGAAATGTTGTATT+GGG | - | chr6_4:3954813-3954832 | Msa0971840:intron | 35.0% |
| ! | CTTTGGGAAATGTTGTATTG+GGG | - | chr6_4:3954814-3954833 | Msa0971840:intron | 35.0% |
| AGATAACTTATCATGAGGGT+AGG | + | chr6_4:3955161-3955180 | None:intergenic | 35.0% | |
| TTAGCTGCAATGATTCTGAT+TGG | - | chr6_4:3955224-3955243 | Msa0971840:intron | 35.0% | |
| ATGTTTCCTTTCTTCAGGAT+TGG | - | chr6_4:3955357-3955376 | Msa0971840:intron | 35.0% | |
| TGTTTCCTTTCTTCAGGATT+GGG | - | chr6_4:3955358-3955377 | Msa0971840:intron | 35.0% | |
| AGAACGAATAAATTGGTGGA+TGG | - | chr6_4:3955419-3955438 | Msa0971840:intron | 35.0% | |
| AGTCTTCTCTGTGATATAGT+TGG | - | chr6_4:3955491-3955510 | Msa0971840:intron | 35.0% | |
| !! | AAACATGAAAGTATTCAGGG+AGG | - | chr6_4:3955518-3955537 | Msa0971840:intron | 35.0% |
| AAAGCAATGCTGTGAAAAAG+TGG | + | chr6_4:3955877-3955896 | None:intergenic | 35.0% | |
| AACTGTTAAGGGATCAAGTA+AGG | + | chr6_4:3956002-3956021 | None:intergenic | 35.0% | |
| GATCCCTTAACAGTTTGAAA+TGG | - | chr6_4:3956007-3956026 | Msa0971840:intron | 35.0% | |
| AATTTGTGCTTGATTGATGC+AGG | - | chr6_4:3956152-3956171 | Msa0971840:intron | 35.0% | |
| ! | ATTACTACCTTAGGTAATGG+TGG | + | chr6_4:3956294-3956313 | None:intergenic | 35.0% |
| ACCATTACCTAAGGTAGTAA+TGG | - | chr6_4:3956293-3956312 | Msa0971840:intron | 35.0% | |
| CCATTACCTAAGGTAGTAAT+GGG | - | chr6_4:3956294-3956313 | Msa0971840:intron | 35.0% | |
| ACATTAAAGAGAGGATGGAT+GGG | + | chr6_4:3956342-3956361 | None:intergenic | 35.0% | |
| AACATTAAAGAGAGGATGGA+TGG | + | chr6_4:3956343-3956362 | None:intergenic | 35.0% | |
| GAAGCTCATGAATTCTTTAG+TGG | - | chr6_4:3956381-3956400 | Msa0971840:CDS | 35.0% | |
| ! | GTGAATCTTATGAACTTGCT+TGG | - | chr6_4:3956532-3956551 | Msa0971840:five_prime_UTR | 35.0% |
| TATACTTGTCATCCCAGTAG+CGG | - | chr6_4:3949469-3949488 | Msa0971840:CDS | 40.0% | |
| TGTATGACACTCACAACACT+GGG | + | chr6_4:3949519-3949538 | None:intergenic | 40.0% | |
| CATTCAATTAGACATGCCAC+TGG | + | chr6_4:3949602-3949621 | None:intergenic | 40.0% | |
| ! | GATTCTCAGGATGCCAATTT+TGG | - | chr6_4:3949926-3949945 | Msa0971840:intron | 40.0% |
| TCAAACTAGCCCACCAAAAT+TGG | + | chr6_4:3949942-3949961 | None:intergenic | 40.0% | |
| !! | ATGTAACATGTTTCGGTGTC+GGG | + | chr6_4:3950087-3950106 | None:intergenic | 40.0% |
| ACCGACATTTCTGATCCAAA+GGG | - | chr6_4:3950190-3950209 | Msa0971840:intron | 40.0% | |
| ACCCTTTGGATCAGAAATGT+CGG | + | chr6_4:3950194-3950213 | None:intergenic | 40.0% | |
| TTAAACACCAGAAACAGCAC+AGG | + | chr6_4:3950315-3950334 | None:intergenic | 40.0% | |
| ATAATCCAGTAACACAGCCA+CGG | + | chr6_4:3950705-3950724 | None:intergenic | 40.0% | |
| ! | TGATTTTCTTAACCGTTGCC+AGG | - | chr6_4:3950782-3950801 | Msa0971840:intron | 40.0% |
| GTTGTAATAACGAGTAGTCG+AGG | - | chr6_4:3951271-3951290 | Msa0971840:intron | 40.0% | |
| TTTGCACAATGTCGTTGCAT+AGG | - | chr6_4:3951395-3951414 | Msa0971840:intron | 40.0% | |
| GATTGGATGCATGCATCAAA+TGG | + | chr6_4:3951479-3951498 | None:intergenic | 40.0% | |
| CATGTGTAATCATGGTCACA+GGG | - | chr6_4:3951765-3951784 | Msa0971840:intron | 40.0% | |
| ATGTGTAATCATGGTCACAG+GGG | - | chr6_4:3951766-3951785 | Msa0971840:intron | 40.0% | |
| AAATGCCAACAGGATCCAAA+TGG | - | chr6_4:3952141-3952160 | Msa0971840:intron | 40.0% | |
| !! | ATCCAAATGGTGGATTTGCT+GGG | - | chr6_4:3952154-3952173 | Msa0971840:intron | 40.0% |
| CTATGGATATGCATAAGAGG+TGG | + | chr6_4:3952306-3952325 | None:intergenic | 40.0% | |
| GAATATGTCAAAGGGTGGTT+TGG | - | chr6_4:3952416-3952435 | Msa0971840:intron | 40.0% | |
| TTGGTATCATGGTTCATGCA+TGG | - | chr6_4:3952435-3952454 | Msa0971840:intron | 40.0% | |
| CAATCAACAAAATTGGGGGA+AGG | + | chr6_4:3952543-3952562 | None:intergenic | 40.0% | |
| ATTGACTGCAGCATAAGTTG+TGG | + | chr6_4:3952783-3952802 | None:intergenic | 40.0% | |
| TTTGGGTGGTGATAAAGCTT+TGG | - | chr6_4:3952814-3952833 | Msa0971840:intron | 40.0% | |
| AATTGTATGGGTTTATGCGG+CGG | - | chr6_4:3952999-3953018 | Msa0971840:intron | 40.0% | |
| ACATACCTAAATCCCCCATT+TGG | + | chr6_4:3953034-3953053 | None:intergenic | 40.0% | |
| !!! | AGCGATGCCAGATTTTGATT+TGG | - | chr6_4:3953179-3953198 | Msa0971840:intron | 40.0% |
| CGCACCATTTAAATTTGTGC+AGG | + | chr6_4:3953248-3953267 | None:intergenic | 40.0% | |
| ! | ACACTGCCATTTCTGTAAGT+TGG | - | chr6_4:3953441-3953460 | Msa0971840:intron | 40.0% |
| ! | TGCACACACATTGCACTTTT+TGG | - | chr6_4:3953520-3953539 | Msa0971840:intron | 40.0% |
| ATAGCAGAATAGCGTAGCAT+TGG | - | chr6_4:3953713-3953732 | Msa0971840:intron | 40.0% | |
| !! | AGAATAGCGTAGCATTGGTA+GGG | - | chr6_4:3953718-3953737 | Msa0971840:intron | 40.0% |
| TTGTCCTGAAACCCTAATAG+CGG | + | chr6_4:3953879-3953898 | None:intergenic | 40.0% | |
| CTTTCGTTTGTGTTCGTTTG+AGG | - | chr6_4:3954113-3954132 | Msa0971840:intron | 40.0% | |
| ! | GTTTGTGTTCGTTTGAGGTT+CGG | - | chr6_4:3954118-3954137 | Msa0971840:intron | 40.0% |
| ! | GGGGAACACTTTTAATGCTA+AGG | - | chr6_4:3954221-3954240 | Msa0971840:intron | 40.0% |
| CATAACACTGGGAATCTTGT+TGG | - | chr6_4:3954267-3954286 | Msa0971840:intron | 40.0% | |
| GATGAGCTGATCAAGAATGT+TGG | - | chr6_4:3954323-3954342 | Msa0971840:intron | 40.0% | |
| ACCGTTGCAAATTGAACTTG+AGG | + | chr6_4:3954543-3954562 | None:intergenic | 40.0% | |
| GGTATTAGTCATGACTTTGG+TGG | - | chr6_4:3954669-3954688 | Msa0971840:intron | 40.0% | |
| ! | TAGTCATGACTTTGGTGGTA+TGG | - | chr6_4:3954674-3954693 | Msa0971840:intron | 40.0% |
| ! | GCCTTTGGGAAATGTTGTAT+TGG | - | chr6_4:3954812-3954831 | Msa0971840:intron | 40.0% |
| CCCAATACAACATTTCCCAA+AGG | + | chr6_4:3954816-3954835 | None:intergenic | 40.0% | |
| TTGAAGGTTTCGTAGAACTC+TGG | - | chr6_4:3954874-3954893 | Msa0971840:intron | 40.0% | |
| TGAAGGTTTCGTAGAACTCT+GGG | - | chr6_4:3954875-3954894 | Msa0971840:intron | 40.0% | |
| TTGCAGCTGTCAAACATATG+AGG | - | chr6_4:3955008-3955027 | Msa0971840:intron | 40.0% | |
| TGCAGCTGTCAAACATATGA+GGG | - | chr6_4:3955009-3955028 | Msa0971840:intron | 40.0% | |
| TGCAATGATTCTGATTGGTG+AGG | - | chr6_4:3955229-3955248 | Msa0971840:intron | 40.0% | |
| TTCAGGATTGGGCTGTATTT+CGG | - | chr6_4:3955369-3955388 | Msa0971840:intron | 40.0% | |
| TCAGGGGAGAACGAATAAAT+TGG | - | chr6_4:3955412-3955431 | Msa0971840:intron | 40.0% | |
| GCCTGACAAAAAGGAAAGTT+CGG | - | chr6_4:3955625-3955644 | Msa0971840:intron | 40.0% | |
| ! | CACTCGTGTTACTGTTTAAG+TGG | - | chr6_4:3956225-3956244 | Msa0971840:intron | 40.0% |
| ! | TAGGTAATGGTGGAGAATCT+GGG | + | chr6_4:3956284-3956303 | None:intergenic | 40.0% |
| ! | TTAGGTAATGGTGGAGAATC+TGG | + | chr6_4:3956285-3956304 | None:intergenic | 40.0% |
| AGATTCTCCACCATTACCTA+AGG | - | chr6_4:3956284-3956303 | Msa0971840:intron | 40.0% | |
| CCCATTACTACCTTAGGTAA+TGG | + | chr6_4:3956297-3956316 | None:intergenic | 40.0% | |
| TAAGGACCCATTACTACCTT+AGG | + | chr6_4:3956303-3956322 | None:intergenic | 40.0% | |
| !! | GGTTCTAAGAGATTGGAGTA+AGG | + | chr6_4:3956321-3956340 | None:intergenic | 40.0% |
| !! | ATGGATGGGTTCTAAGAGAT+TGG | + | chr6_4:3956328-3956347 | None:intergenic | 40.0% |
| CATTCAACAGATAGAGCTCT+TGG | + | chr6_4:3956435-3956454 | None:intergenic | 40.0% | |
| !! | ATTTGATTTGGCCCTTCCAA+AGG | - | chr6_4:3956567-3956586 | Msa0971840:five_prime_UTR | 40.0% |
| !! | TTTGATTTGGCCCTTCCAAA+GGG | - | chr6_4:3956568-3956587 | Msa0971840:five_prime_UTR | 40.0% |
| ! | AAATCATACCCCCTTTGGAA+GGG | + | chr6_4:3956581-3956600 | None:intergenic | 40.0% |
| TAAATCATACCCCCTTTGGA+AGG | + | chr6_4:3956582-3956601 | None:intergenic | 40.0% | |
| CTTGTAAATCATACCCCCTT+TGG | + | chr6_4:3956586-3956605 | None:intergenic | 40.0% | |
| TGATCTCTTTGACTCACCGT+CGG | + | chr6_4:3949226-3949245 | None:intergenic | 45.0% | |
| CGGTGAGTCAAAGAGATCAA+TGG | - | chr6_4:3949227-3949246 | Msa0971840:three_prime_UTR | 45.0% | |
| TACATGAGGGATTGAGCGTT+AGG | + | chr6_4:3949304-3949323 | None:intergenic | 45.0% | |
| GTGTATGACACTCACAACAC+TGG | + | chr6_4:3949520-3949539 | None:intergenic | 45.0% | |
| ! | TGTTTTCTCTGTAGCACCAG+TGG | - | chr6_4:3949583-3949602 | Msa0971840:intron | 45.0% |
| !! | AGAACTCAATTGGGTTGGCT+TGG | - | chr6_4:3949853-3949872 | Msa0971840:CDS | 45.0% |
| ! | TCTCAGGATGCCAATTTTGG+TGG | - | chr6_4:3949929-3949948 | Msa0971840:intron | 45.0% |
| !! | CTCAGGATGCCAATTTTGGT+GGG | - | chr6_4:3949930-3949949 | Msa0971840:intron | 45.0% |
| CTAGCTCACCAATGTTGAAG+AGG | + | chr6_4:3949965-3949984 | None:intergenic | 45.0% | |
| CACCGACATTTCTGATCCAA+AGG | - | chr6_4:3950189-3950208 | Msa0971840:intron | 45.0% | |
| GACATCAGGCAAGATTAACC+AGG | + | chr6_4:3950408-3950427 | None:intergenic | 45.0% | |
| TCTAAAGGACTTCGCCATCT+CGG | - | chr6_4:3950542-3950561 | Msa0971840:intron | 45.0% | |
| CTGAAAAAGCTGAACCGAGA+TGG | + | chr6_4:3950559-3950578 | None:intergenic | 45.0% | |
| GCTATACACCGATGGTATGA+AGG | - | chr6_4:3950880-3950899 | Msa0971840:intron | 45.0% | |
| TAGAATCCAAGTTCGATGCC+GGG | + | chr6_4:3951221-3951240 | None:intergenic | 45.0% | |
| GTAGAATCCAAGTTCGATGC+CGG | + | chr6_4:3951222-3951241 | None:intergenic | 45.0% | |
| GCATGTGTAATCATGGTCAC+AGG | - | chr6_4:3951764-3951783 | Msa0971840:intron | 45.0% | |
| CTAAATGGATCATCTGGGCT+AGG | + | chr6_4:3952022-3952041 | None:intergenic | 45.0% | |
| ATCCACCATTTGGATCCTGT+TGG | + | chr6_4:3952149-3952168 | None:intergenic | 45.0% | |
| !! | GATCCAAATGGTGGATTTGC+TGG | - | chr6_4:3952153-3952172 | Msa0971840:intron | 45.0% |
| !! | TCCAAATGGTGGATTTGCTG+GGG | - | chr6_4:3952155-3952174 | Msa0971840:intron | 45.0% |
| AAGTGTAACAGTTGCTTGCC+TGG | + | chr6_4:3952188-3952207 | None:intergenic | 45.0% | |
| !! | CAAAGGGTGGTTTGGTATCA+TGG | - | chr6_4:3952424-3952443 | Msa0971840:intron | 45.0% |
| TAACTGCAGTACTTCCTGGA+AGG | - | chr6_4:3952646-3952665 | Msa0971840:CDS | 45.0% | |
| GCATAAGTTGTGGCAAGATG+AGG | + | chr6_4:3952773-3952792 | None:intergenic | 45.0% | |
| CGGTAGAGTTCTGTTCTCTT+CGG | - | chr6_4:3952908-3952927 | Msa0971840:intron | 45.0% | |
| AACAGCCAAATGGGGGATTT+AGG | - | chr6_4:3953026-3953045 | Msa0971840:intron | 45.0% | |
| ! | TAATGGTATTGGACATGGCC+TGG | - | chr6_4:3953600-3953619 | Msa0971840:intron | 45.0% |
| AGTGGCGCTATTGACAACAT+AGG | + | chr6_4:3953681-3953700 | None:intergenic | 45.0% | |
| !! | CAGAATAGCGTAGCATTGGT+AGG | - | chr6_4:3953717-3953736 | Msa0971840:intron | 45.0% |
| ! | TGACAAACGCTAGTGCTGAA+GGG | + | chr6_4:3953773-3953792 | None:intergenic | 45.0% |
| CACAATTTCACTGCAGTTCG+CGG | + | chr6_4:3953836-3953855 | None:intergenic | 45.0% | |
| TGTCCTGAAACCCTAATAGC+GGG | + | chr6_4:3953878-3953897 | None:intergenic | 45.0% | |
| ! | TCATGACTTTGGTGGTATGG+TGG | - | chr6_4:3954677-3954696 | Msa0971840:intron | 45.0% |
| AGCTGTCAAACATATGAGGG+AGG | - | chr6_4:3955012-3955031 | Msa0971840:intron | 45.0% | |
| GAAATGAGAGAAGGGACAGT+TGG | + | chr6_4:3955093-3955112 | None:intergenic | 45.0% | |
| CATTGCAGCTAACCCACAAA+AGG | + | chr6_4:3955216-3955235 | None:intergenic | 45.0% | |
| GATTGGTGAGGCTAATAGCT+TGG | - | chr6_4:3955241-3955260 | Msa0971840:intron | 45.0% | |
| TACAGCCCAATCCTGAAGAA+AGG | + | chr6_4:3955366-3955385 | None:intergenic | 45.0% | |
| ! | AGGTAAGGAGTGTGGATTTC+AGG | - | chr6_4:3955394-3955413 | Msa0971840:intron | 45.0% |
| ! | GGTAAGGAGTGTGGATTTCA+GGG | - | chr6_4:3955395-3955414 | Msa0971840:intron | 45.0% |
| ! | GTAAGGAGTGTGGATTTCAG+GGG | - | chr6_4:3955396-3955415 | Msa0971840:intron | 45.0% |
| GGGGAGAACGAATAAATTGG+TGG | - | chr6_4:3955415-3955434 | Msa0971840:intron | 45.0% | |
| ! | TGGATGGATGCTACTCGTTT+TGG | - | chr6_4:3955435-3955454 | Msa0971840:intron | 45.0% |
| ATCTGATGCGCCTGACAAAA+AGG | - | chr6_4:3955616-3955635 | Msa0971840:intron | 45.0% | |
| ! | GCCGAACTTTCCTTTTTGTC+AGG | + | chr6_4:3955629-3955648 | None:intergenic | 45.0% |
| GACAAAAAGGAAAGTTCGGC+TGG | - | chr6_4:3955629-3955648 | Msa0971840:intron | 45.0% | |
| TGATTGATGCAGGAGCAAGA+CGG | - | chr6_4:3956162-3956181 | Msa0971840:intron | 45.0% | |
| TAAGGGACAAACCGGGTAAA+CGG | - | chr6_4:3956190-3956209 | Msa0971840:intron | 45.0% | |
| ! | GTGGTTTGTAACTGGTGACA+TGG | - | chr6_4:3956400-3956419 | Msa0971840:CDS | 45.0% |
| TGGAAGGGCCAAATCAAATG+AGG | + | chr6_4:3956566-3956585 | None:intergenic | 45.0% | |
| !! | TTGATTTGGCCCTTCCAAAG+GGG | - | chr6_4:3956569-3956588 | Msa0971840:five_prime_UTR | 45.0% |
| !!! | TTTTTATTTTATTTTATGAT+TGG | - | chr6_4:3951155-3951174 | Msa0971840:intron | 5.0% |
| !! | TTATATATAATATACAATTA+TGG | + | chr6_4:3952365-3952384 | None:intergenic | 5.0% |
| !! | TCAGTTCCAGAAAGCACCGA+CGG | - | chr6_4:3949159-3949178 | Msa0971840:three_prime_UTR | 50.0% |
| ACCGATGGAACCTTCATCTG+CGG | - | chr6_4:3949186-3949205 | Msa0971840:three_prime_UTR | 50.0% | |
| ATGAGGGATTGAGCGTTAGG+AGG | + | chr6_4:3949301-3949320 | None:intergenic | 50.0% | |
| !! | TCAGAAGTGTCACCGCTACT+GGG | + | chr6_4:3949484-3949503 | None:intergenic | 50.0% |
| !! | ATCAGAAGTGTCACCGCTAC+TGG | + | chr6_4:3949485-3949504 | None:intergenic | 50.0% |
| !! | ACTCAATTGGGTTGGCTTGG+TGG | - | chr6_4:3949856-3949875 | Msa0971840:CDS | 50.0% |
| !! | TGGCTTGGTGGTGTTGACTT+AGG | - | chr6_4:3949868-3949887 | Msa0971840:CDS | 50.0% |
| !! | GTGGTGTTGACTTAGGACCT+TGG | - | chr6_4:3949875-3949894 | Msa0971840:intron | 50.0% |
| ATCGAACCTGAGACCTTGAG+AGG | + | chr6_4:3949909-3949928 | None:intergenic | 50.0% | |
| AGGTCTCAGGTTCGATTCTC+AGG | - | chr6_4:3949913-3949932 | Msa0971840:intron | 50.0% | |
| ACACCTTCGATCACAGGTGT+CGG | + | chr6_4:3950062-3950081 | None:intergenic | 50.0% | |
| CACTTACACGTGTCGAACAG+TGG | + | chr6_4:3950219-3950238 | None:intergenic | 50.0% | |
| ! | AACAGCACAGGTTGACACGT+CGG | + | chr6_4:3950303-3950322 | None:intergenic | 50.0% |
| !! | GTGTCAACCTGTGCTGTTTC+TGG | - | chr6_4:3950305-3950324 | Msa0971840:intron | 50.0% |
| AAGTTCTGTGCCCACGAAAG+AGG | + | chr6_4:3950357-3950376 | None:intergenic | 50.0% | |
| GGAAGAACTAAGCGCCACAT+TGG | - | chr6_4:3951613-3951632 | Msa0971840:intron | 50.0% | |
| TGCCAACAGGATCCAAATGG+TGG | - | chr6_4:3952144-3952163 | Msa0971840:intron | 50.0% | |
| !! | CCAAATGGTGGATTTGCTGG+GGG | - | chr6_4:3952156-3952175 | Msa0971840:intron | 50.0% |
| GCTGTAACTGCAGTACTTCC+TGG | - | chr6_4:3952642-3952661 | Msa0971840:CDS | 50.0% | |
| GGCGGATGAAACAGCCAAAT+GGG | - | chr6_4:3953017-3953036 | Msa0971840:intron | 50.0% | |
| GCGGATGAAACAGCCAAATG+GGG | - | chr6_4:3953018-3953037 | Msa0971840:intron | 50.0% | |
| CGGATGAAACAGCCAAATGG+GGG | - | chr6_4:3953019-3953038 | Msa0971840:intron | 50.0% | |
| CATCTACGCATAAGCATGCG+TGG | + | chr6_4:3953492-3953511 | None:intergenic | 50.0% | |
| TGACAGGATGCTAGAGCTGT+TGG | - | chr6_4:3953645-3953664 | Msa0971840:intron | 50.0% | |
| !! | AGCGTAGCATTGGTAGGGTT+TGG | - | chr6_4:3953723-3953742 | Msa0971840:intron | 50.0% |
| ! | ACAAACGCTAGTGCTGAAGG+GGG | + | chr6_4:3953771-3953790 | None:intergenic | 50.0% |
| ! | GACAAACGCTAGTGCTGAAG+GGG | + | chr6_4:3953772-3953791 | None:intergenic | 50.0% |
| ! | GTGACAAACGCTAGTGCTGA+AGG | + | chr6_4:3953774-3953793 | None:intergenic | 50.0% |
| CGCGAACTGCAGTGAAATTG+TGG | - | chr6_4:3953834-3953853 | Msa0971840:intron | 50.0% | |
| GTGAAATTGTGGCCTCAACC+CGG | - | chr6_4:3953845-3953864 | Msa0971840:intron | 50.0% | |
| CTGGGAATCTTGTTGGAACC+AGG | - | chr6_4:3954274-3954293 | Msa0971840:intron | 50.0% | |
| AGTCGCACTAGCCACAATGT+TGG | - | chr6_4:3954788-3954807 | Msa0971840:intron | 50.0% | |
| !! | ACATATGAGGGAGGCATTGC+TGG | - | chr6_4:3955021-3955040 | Msa0971840:intron | 50.0% |
| GATTGGGCTGTATTTCGGCA+AGG | - | chr6_4:3955374-3955393 | Msa0971840:intron | 50.0% | |
| GGCTGTATTTCGGCAAGGTA+AGG | - | chr6_4:3955379-3955398 | Msa0971840:intron | 50.0% | |
| TTTCGGCAAGGTAAGGAGTG+TGG | - | chr6_4:3955386-3955405 | Msa0971840:intron | 50.0% | |
| !! | TGGATGCTACTCGTTTTGGC+AGG | - | chr6_4:3955439-3955458 | Msa0971840:intron | 50.0% |
| GTCATGCAACTTCCCGTATC+AGG | - | chr6_4:3955660-3955679 | Msa0971840:intron | 50.0% | |
| ACCTACCTTCACGCCTGATA+CGG | + | chr6_4:3955676-3955695 | None:intergenic | 50.0% | |
| TAGTGATCCCTCCGTTTACC+CGG | + | chr6_4:3956204-3956223 | None:intergenic | 50.0% | |
| GGCGCTTGGACAAACTATAC+TGG | + | chr6_4:3956263-3956282 | None:intergenic | 50.0% | |
| ! | TGATTTGGCCCTTCCAAAGG+GGG | - | chr6_4:3956570-3956589 | Msa0971840:five_prime_UTR | 50.0% |
| ! | GTTACACCGTCGGTGCTTTC+TGG | + | chr6_4:3949168-3949187 | None:intergenic | 55.0% |
| ! | GGTTCCATCGGTTACACCGT+CGG | + | chr6_4:3949178-3949197 | None:intergenic | 55.0% |
| GCCGCAGATGAAGGTTCCAT+CGG | + | chr6_4:3949190-3949209 | None:intergenic | 55.0% | |
| GATGGAACCTTCATCTGCGG+CGG | - | chr6_4:3949189-3949208 | Msa0971840:three_prime_UTR | 55.0% | |
| CTTTGACTCACCGTCGGTGA+TGG | + | chr6_4:3949220-3949239 | None:intergenic | 55.0% | |
| TGCGTGTCAGTGTCAGTGTC+TGG | - | chr6_4:3949620-3949639 | Msa0971840:intron | 55.0% | |
| ! | CTTGAGAGGAGCACACTCCA+AGG | + | chr6_4:3949895-3949914 | None:intergenic | 55.0% |
| CTTGGAGTGTGCTCCTCTCA+AGG | - | chr6_4:3949893-3949912 | Msa0971840:intron | 55.0% | |
| TGTGCTCCTCTCAAGGTCTC+AGG | - | chr6_4:3949900-3949919 | Msa0971840:intron | 55.0% | |
| CGGGAAACACCTTCGATCAC+AGG | + | chr6_4:3950068-3950087 | None:intergenic | 55.0% | |
| GTCGAACAGTGGACACCCTT+TGG | + | chr6_4:3950208-3950227 | None:intergenic | 55.0% | |
| GTTTATGGTGCAGTCGACCG+TGG | - | chr6_4:3950685-3950704 | Msa0971840:intron | 55.0% | |
| TTCCTCCTTCCCGTGTGTGT+GGG | + | chr6_4:3951189-3951208 | None:intergenic | 55.0% | |
| ! | AAGGAGGAAGTGTGGTGACC+CGG | - | chr6_4:3951200-3951219 | Msa0971840:intron | 55.0% |
| CCCCCAGCAAATCCACCATT+TGG | + | chr6_4:3952159-3952178 | None:intergenic | 55.0% | |
| TAACAGTTGCTTGCCTGGCC+AGG | + | chr6_4:3952183-3952202 | None:intergenic | 55.0% | |
| ! | GTGGCAAGATGAGGCATCTG+AGG | + | chr6_4:3952764-3952783 | None:intergenic | 55.0% |
| CGGCGGATGAAACAGCCAAA+TGG | - | chr6_4:3953016-3953035 | Msa0971840:intron | 55.0% | |
| ! | ACTTTGGTGGTATGGTGGCG+AGG | - | chr6_4:3954682-3954701 | Msa0971840:intron | 55.0% |
| ! | CTTTGGTGGTATGGTGGCGA+GGG | - | chr6_4:3954683-3954702 | Msa0971840:intron | 55.0% |
| AGCCACAATGTTGGCGCCTT+TGG | - | chr6_4:3954797-3954816 | Msa0971840:intron | 55.0% | |
| GCCACAATGTTGGCGCCTTT+GGG | - | chr6_4:3954798-3954817 | Msa0971840:intron | 55.0% | |
| !! | TCCCAAAGGCGCCAACATTG+TGG | + | chr6_4:3954802-3954821 | None:intergenic | 55.0% |
| !! | CTGGTTCTGAGGCTCATGGT+GGG | - | chr6_4:3955049-3955068 | Msa0971840:intron | 55.0% |
| ACTTCCCGTATCAGGCGTGA+AGG | - | chr6_4:3955668-3955687 | Msa0971840:intron | 55.0% | |
| CCTACCTTCACGCCTGATAC+GGG | + | chr6_4:3955675-3955694 | None:intergenic | 55.0% | |
| TTGATGCAGGAGCAAGACGG+TGG | - | chr6_4:3956165-3956184 | Msa0971840:intron | 55.0% | |
| !! | AGGAGCAAGACGGTGGACTA+AGG | - | chr6_4:3956172-3956191 | Msa0971840:intron | 55.0% |
| !! | GGAGCAAGACGGTGGACTAA+GGG | - | chr6_4:3956173-3956192 | Msa0971840:intron | 55.0% |
| !! | CGGTGGACTAAGGGACAAAC+CGG | - | chr6_4:3956182-3956201 | Msa0971840:intron | 55.0% |
| !! | GGTGGACTAAGGGACAAACC+GGG | - | chr6_4:3956183-3956202 | Msa0971840:intron | 55.0% |
| GGACAAACCGGGTAAACGGA+GGG | - | chr6_4:3956194-3956213 | Msa0971840:intron | 55.0% | |
| !! | AGCACCGACGGTGTAACCGA+TGG | - | chr6_4:3949171-3949190 | Msa0971840:three_prime_UTR | 60.0% |
| GGACCGACACCTGTGATCGA+AGG | - | chr6_4:3950056-3950075 | Msa0971840:CDS | 60.0% | |
| GTCGACCGTGGCTGTGTTAC+TGG | - | chr6_4:3950697-3950716 | Msa0971840:intron | 60.0% | |
| CTTCCTCCTTCCCGTGTGTG+TGG | + | chr6_4:3951190-3951209 | None:intergenic | 60.0% | |
| CACACGGGAAGGAGGAAGTG+TGG | - | chr6_4:3951192-3951211 | Msa0971840:intron | 60.0% | |
| ! | TGGTGACCCGGCATCGAACT+TGG | - | chr6_4:3951212-3951231 | Msa0971840:intron | 60.0% |
| !! | CTAATAGCGGGCGCGATTCC+GGG | + | chr6_4:3953866-3953885 | None:intergenic | 60.0% |
| !! | CCTAATAGCGGGCGCGATTC+CGG | + | chr6_4:3953867-3953886 | None:intergenic | 60.0% |
| CGGAATCGCGCCCGCTATTA+GGG | - | chr6_4:3953865-3953884 | Msa0971840:intron | 60.0% | |
| GCGCCCGCTATTAGGGTTTC+AGG | - | chr6_4:3953872-3953891 | Msa0971840:intron | 60.0% | |
| !! | TGCTGGTGAGCCTGGTTCTG+AGG | - | chr6_4:3955038-3955057 | Msa0971840:intron | 60.0% |
| !! | GAGCCTGGTTCTGAGGCTCA+TGG | - | chr6_4:3955045-3955064 | Msa0971840:intron | 60.0% |
| CCACCATGAGCCTCAGAACC+AGG | + | chr6_4:3955051-3955070 | None:intergenic | 60.0% | |
| !! | CCTGGTTCTGAGGCTCATGG+TGG | - | chr6_4:3955048-3955067 | Msa0971840:intron | 60.0% |
| CCCGTATCAGGCGTGAAGGT+AGG | - | chr6_4:3955672-3955691 | Msa0971840:intron | 60.0% | |
| GGGACAAACCGGGTAAACGG+AGG | - | chr6_4:3956193-3956212 | Msa0971840:intron | 60.0% | |
| TGGTGGAGAATCTGGGCGCT+TGG | + | chr6_4:3956277-3956296 | None:intergenic | 60.0% | |
| GGTGTCTCCGCCGCAGATGA+AGG | + | chr6_4:3949199-3949218 | None:intergenic | 65.0% | |
| GGCGGAGACACCATCACCGA+CGG | - | chr6_4:3949207-3949226 | Msa0971840:three_prime_UTR | 65.0% | |
| GGCCTAGTGGCCCACACACA+CGG | - | chr6_4:3951176-3951195 | Msa0971840:intron | 65.0% | |
| GCCTAGTGGCCCACACACAC+GGG | - | chr6_4:3951177-3951196 | Msa0971840:intron | 65.0% | |
| TCCCGTGTGTGTGGGCCACT+AGG | + | chr6_4:3951181-3951200 | None:intergenic | 65.0% | |
| AGTGGCCCACACACACGGGA+AGG | - | chr6_4:3951181-3951200 | Msa0971840:intron | 65.0% | |
| !! | GGTGGATTTGCTGGGGGACC+TGG | - | chr6_4:3952162-3952181 | Msa0971840:intron | 65.0% |
| ! | ATTTGCTGGGGGACCTGGCC+AGG | - | chr6_4:3952167-3952186 | Msa0971840:intron | 65.0% |
| GAAGGGGGCTCGCAGGAAGA+TGG | + | chr6_4:3953756-3953775 | None:intergenic | 65.0% | |
| ! | TAGTGCTGAAGGGGGCTCGC+AGG | + | chr6_4:3953763-3953782 | None:intergenic | 65.0% |
| CCGGAATCGCGCCCGCTATT+AGG | - | chr6_4:3953864-3953883 | Msa0971840:intron | 65.0% | |
| !! | GGAGGCATTGCTGGTGAGCC+TGG | - | chr6_4:3955030-3955049 | Msa0971840:intron | 65.0% |
| GGCCCACACACACGGGAAGG+AGG | - | chr6_4:3951184-3951203 | Msa0971840:intron | 70.0% | |
| GCGGGCGCGATTCCGGGTTG+AGG | + | chr6_4:3953860-3953879 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 3949077 | 3956612 | 3949077 | ID=Msa0971840;Name=Msa0971840 |
| chr6_4 | mRNA | 3949077 | 3956612 | 3949077 | ID=Msa0971840-mRNA-1;Parent=Msa0971840;Name=Msa0971840-mRNA-1;_AED=0.15;_eAED=0.15;_QI=113|1|1|1|1|1|14|202|448 |
| chr6_4 | exon | 3949077 | 3949515 | 3949077 | ID=Msa0971840-mRNA-1:exon:1750;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3949765 | 3949889 | 3949765 | ID=Msa0971840-mRNA-1:exon:1749;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3950000 | 3950153 | 3950000 | ID=Msa0971840-mRNA-1:exon:1748;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3950229 | 3950315 | 3950229 | ID=Msa0971840-mRNA-1:exon:1747;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3950409 | 3950481 | 3950409 | ID=Msa0971840-mRNA-1:exon:1746;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3950619 | 3950675 | 3950619 | ID=Msa0971840-mRNA-1:exon:1745;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3951329 | 3951393 | 3951329 | ID=Msa0971840-mRNA-1:exon:1744;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3952235 | 3952286 | 3952235 | ID=Msa0971840-mRNA-1:exon:1743;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3952642 | 3952695 | 3952642 | ID=Msa0971840-mRNA-1:exon:1742;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3952840 | 3952922 | 3952840 | ID=Msa0971840-mRNA-1:exon:1741;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3953501 | 3953536 | 3953501 | ID=Msa0971840-mRNA-1:exon:1740;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3954886 | 3954991 | 3954886 | ID=Msa0971840-mRNA-1:exon:1739;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3955098 | 3955184 | 3955098 | ID=Msa0971840-mRNA-1:exon:1738;Parent=Msa0971840-mRNA-1 |
| chr6_4 | exon | 3956369 | 3956612 | 3956369 | ID=Msa0971840-mRNA-1:exon:1737;Parent=Msa0971840-mRNA-1 |
| chr6_4 | five_prime_UTR | 3956500 | 3956612 | 3956500 | ID=Msa0971840-mRNA-1:five_prime_utr;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3956369 | 3956499 | 3956369 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3955098 | 3955184 | 3955098 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3954886 | 3954991 | 3954886 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3953501 | 3953536 | 3953501 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3952840 | 3952922 | 3952840 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3952642 | 3952695 | 3952642 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3952235 | 3952286 | 3952235 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3951329 | 3951393 | 3951329 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3950619 | 3950675 | 3950619 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3950409 | 3950481 | 3950409 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3950229 | 3950315 | 3950229 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3950000 | 3950153 | 3950000 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3949765 | 3949889 | 3949765 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | CDS | 3949279 | 3949515 | 3949279 | ID=Msa0971840-mRNA-1:cds;Parent=Msa0971840-mRNA-1 |
| chr6_4 | three_prime_UTR | 3949077 | 3949278 | 3949077 | ID=Msa0971840-mRNA-1:three_prime_utr;Parent=Msa0971840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
