AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0093010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093010 MtrunA17_Chr7g0271761 99.482 193 1 0 1 193 1 193 3.72e-143 396
Msa0093010 MtrunA17_Chr2g0294701 93.264 193 13 0 1 193 1 193 1.15e-137 382
Msa0093010 MtrunA17_Chr4g0068171 89.637 193 20 0 1 193 1 193 9.08e-134 372
Msa0093010 MtrunA17_Chr4g0072861 33.523 176 105 1 18 193 15 178 5.00e-28 103
Msa0093010 MtrunA17_Chr5g0401761 32.203 177 104 2 18 192 15 177 1.92e-25 97.1
Msa0093010 MtrunA17_Chr6g0450081 31.073 177 106 2 18 192 15 177 3.77e-24 93.6
Msa0093010 MtrunA17_Chr5g0413451 31.073 177 106 2 18 192 15 177 4.02e-24 93.6
Msa0093010 MtrunA17_Chr5g0413441 31.073 177 106 2 18 192 15 177 4.02e-24 93.6
Msa0093010 MtrunA17_Chr1g0194261 31.073 177 106 2 18 192 15 177 4.20e-24 93.6
Msa0093010 MtrunA17_Chr7g0270301 31.073 177 106 2 18 192 15 177 4.20e-24 93.6
Msa0093010 MtrunA17_Chr1g0188111 35.088 171 99 2 19 189 16 174 1.14e-23 92.4
Msa0093010 MtrunA17_Chr4g0012371 37.778 135 77 2 22 152 2 133 2.50e-23 91.3
Msa0093010 MtrunA17_Chr2g0287721 37.584 149 81 3 15 151 7 155 2.76e-23 92.0
Msa0093010 MtrunA17_Chr8g0373271 32.164 171 105 1 22 192 18 177 2.77e-23 91.7
Msa0093010 MtrunA17_Chr5g0395631 29.319 191 115 3 3 193 8 178 3.24e-23 91.7
Msa0093010 MtrunA17_Chr4g0039591 29.319 191 115 3 3 193 8 178 1.12e-22 90.1
Msa0093010 MtrunA17_Chr5g0395641 34.848 132 82 2 20 148 17 147 1.66e-22 89.7
Msa0093010 MtrunA17_Chr5g0401071 36.601 153 95 2 1 152 1 152 1.91e-22 89.4
Msa0093010 MtrunA17_Chr5g0434561 36.296 135 85 1 18 151 17 151 4.66e-22 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093010 AT4G02080.1 94.819 193 10 0 1 193 1 193 5.46e-139 386
Msa0093010 AT3G62560.1 93.750 192 12 0 1 192 1 192 1.68e-136 379
Msa0093010 AT1G56330.1 91.667 192 16 0 1 192 1 192 1.05e-133 372
Msa0093010 AT1G09180.1 87.047 193 25 0 1 193 1 193 6.33e-127 355
Msa0093010 AT1G02620.1 87.387 111 14 0 83 193 12 122 9.18e-71 211
Msa0093010 AT2G24765.1 34.091 176 104 1 18 193 15 178 1.17e-27 103
Msa0093010 AT3G49870.1 38.562 153 92 2 1 152 1 152 4.07e-26 99.4
Msa0093010 AT5G67560.1 36.424 151 90 2 3 152 7 152 5.18e-25 96.3
Msa0093010 AT3G49870.2 40.310 129 76 1 25 152 5 133 1.59e-24 94.7
Msa0093010 AT2G47170.2 31.016 187 113 2 8 192 5 177 2.10e-24 94.7
Msa0093010 AT2G47170.1 31.016 187 113 2 8 192 5 177 2.10e-24 94.7
Msa0093010 AT2G47170.3 31.016 187 113 2 8 192 5 177 2.10e-24 94.7
Msa0093010 AT3G22950.1 34.483 174 102 2 19 192 16 177 2.28e-24 94.7
Msa0093010 AT3G22950.2 34.483 174 102 2 19 192 16 177 2.28e-24 94.7
Msa0093010 AT3G62290.3 31.016 187 113 2 8 192 5 177 2.96e-24 94.4
Msa0093010 AT3G62290.1 31.016 187 113 2 8 192 5 177 2.96e-24 94.4
Msa0093010 AT3G62290.2 31.016 187 113 2 8 192 5 177 2.96e-24 94.4
Msa0093010 AT1G10630.1 31.073 177 106 2 18 192 15 177 5.49e-24 93.6
Msa0093010 AT1G10630.2 31.073 177 106 2 18 192 15 177 5.49e-24 93.6
Msa0093010 AT5G14670.2 31.073 177 106 2 18 192 15 177 5.55e-24 93.6
Msa0093010 AT5G14670.3 31.073 177 106 2 18 192 15 177 5.55e-24 93.6
Msa0093010 AT1G23490.1 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0093010 AT1G70490.2 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0093010 AT1G70490.7 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0093010 AT1G70490.4 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0093010 AT1G70490.3 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0093010 AT1G70490.1 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0093010 AT1G70490.6 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0093010 AT1G70490.5 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0093010 AT5G14670.1 31.073 177 106 2 18 192 15 177 6.78e-24 93.6
Msa0093010 AT2G24765.2 40.708 113 67 0 18 130 15 127 6.98e-24 92.0
Msa0093010 AT2G18390.1 32.749 171 104 1 22 192 18 177 8.78e-24 93.2
Msa0093010 AT3G49860.1 37.143 140 87 1 15 153 6 145 1.22e-23 92.8
Msa0093010 AT5G37680.1 36.029 136 86 1 18 152 17 152 1.42e-22 90.1
Msa0093010 AT5G17060.2 28.796 191 116 3 3 193 8 178 3.64e-22 89.4
Msa0093010 AT5G17060.1 28.796 191 116 3 3 193 8 178 3.64e-22 89.4
Msa0093010 AT3G03120.1 32.877 146 90 1 3 148 8 145 9.95e-22 88.2
Msa0093010 AT2G15310.1 29.189 185 119 1 8 192 5 177 1.01e-21 88.2
Msa0093010 AT5G52210.1 36.242 149 77 3 15 148 7 152 3.44e-20 84.3
Msa0093010 AT5G52210.2 36.242 149 77 3 15 148 7 152 3.44e-20 84.3
Msa0093010 AT3G03120.2 32.061 131 81 1 3 133 8 130 5.33e-20 82.0
Msa0093010 AT5G37680.2 38.835 103 63 0 50 152 3 105 2.52e-18 77.8
Msa0093010 AT1G02430.2 31.206 141 89 4 18 151 15 154 1.39e-14 68.6
Msa0093010 AT1G02430.1 31.206 141 89 4 18 151 15 154 2.35e-14 68.6

Find 57 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCTCATCACTGCTTTC+GGG 0.178483 1_2:+75834774 Msa0093010:five_prime_UTR
CTCTCTCTCATCACTGCTTT+CGG 0.226129 1_2:+75834773 Msa0093010:five_prime_UTR
GTGCAGTATTGTGAAGAAAA+TGG 0.290748 1_2:+75837217 Msa0093010:CDS
TCATCACTGCTTTCGGGGTT+AGG 0.311328 1_2:+75834780 Msa0093010:five_prime_UTR
TTCTAGCATCGCTTGGATTA+TGG 0.331495 1_2:+75834912 Msa0093010:CDS
AGACGAATTGCGTTACCATT+TGG 0.332275 1_2:+75837118 Msa0093010:CDS
GACGAATTGCGTTACCATTT+GGG 0.348316 1_2:+75837119 Msa0093010:CDS
GAGGCTAAGATCTTATTCTT+AGG 0.351250 1_2:+75834941 Msa0093010:CDS
TCTCCTTTCTGATGAATCAT+TGG 0.399431 1_2:+75837037 Msa0093010:CDS
AATGTCCCTTTCCTTGTCCT+TGG 0.407599 1_2:+75837062 Msa0093010:CDS
ACTGCTTTCGGGGTTAGGTT+AGG 0.415385 1_2:+75834785 Msa0093010:five_prime_UTR
ATCAGATTGCTCGTAGAGTC+TGG 0.419780 1_2:+75835680 Msa0093010:CDS
CATCAGAAGAGTTGAGTATT+GGG 0.422638 1_2:+75835623 Msa0093010:CDS
TCGTCTTCTGAGGCAGCATA+TGG 0.429799 1_2:-75837101 None:intergenic
TTCTTTAGTAAGAGATGGCT+TGG 0.431594 1_2:+75837286 Msa0093010:three_prime_UTR
GATACTGAGTCGGCTGATGC+TGG 0.450131 1_2:-75835597 None:intergenic
GTTATGGTGATGGTTTCAAA+TGG 0.456424 1_2:+75837240 Msa0093010:CDS
TTAAATGTTGGAAGTGTTGT+TGG 0.466848 1_2:+75837340 Msa0093010:three_prime_UTR
TACGGGGTTCTAGCATCGCT+TGG 0.473883 1_2:+75834905 Msa0093010:CDS
TTATGGTGATGGTTTCAAAT+GGG 0.483238 1_2:+75837241 Msa0093010:CDS
ACATCAGAAGAGTTGAGTAT+TGG 0.487462 1_2:+75835622 Msa0093010:CDS
GGCTTGAGCAACTTCACCAC+TGG 0.494395 1_2:+75837140 Msa0093010:CDS
TGCAGTATTGTGAAGAAAAT+GGG 0.501905 1_2:+75837218 Msa0093010:CDS
TGAAGTTGCTCAAGCCCAAA+TGG 0.508916 1_2:-75837133 None:intergenic
TAGAGTTCTTTAGTAAGAGA+TGG 0.510913 1_2:+75837281 Msa0093010:exon
TGTTTCCAAGGACAAGGAAA+GGG 0.516162 1_2:-75837067 None:intergenic
GGTAGATGCAGTGGTCTACT+TGG 0.525431 1_2:+75836962 Msa0093010:intron
CTTCACCACTGGCAAGGGTA+AGG 0.533342 1_2:+75837151 Msa0093010:CDS
TTGTTTCCAAGGACAAGGAA+AGG 0.535849 1_2:-75837068 None:intergenic
AGTGATGAGAGAGAGTAGGT+TGG 0.539435 1_2:-75834765 None:intergenic
AAGAAAATGGGTTATGGTGA+TGG 0.542914 1_2:+75837230 Msa0093010:CDS
TTGCCAATGATTCATCAGAA+AGG 0.547484 1_2:-75837040 None:intergenic
GAGACGAATTTCACGTTGTG+AGG 0.551573 1_2:-75834818 None:intergenic
TTCTTAGGTCTCGACAACGC+CGG 0.556039 1_2:+75834956 Msa0093010:CDS
GAGCAACTTCACCACTGGCA+AGG 0.556603 1_2:+75837145 Msa0093010:CDS
AGCAACTTCACCACTGGCAA+GGG 0.561923 1_2:+75837146 Msa0093010:CDS
ATTGTGAAGAAAATGGGTTA+TGG 0.564263 1_2:+75837224 Msa0093010:CDS
CTGGAAAGATTACTATGCCC+AGG 0.565879 1_2:+75835699 Msa0093010:CDS
CTTGGTTGATGCTTATGACA+AGG 0.569852 1_2:+75836980 Msa0093010:CDS
AGACTCAAATGTCCGACCCA+TGG 0.577020 1_2:+75837184 Msa0093010:CDS
CTCTCTCATCACTGCTTTCG+GGG 0.582470 1_2:+75834775 Msa0093010:five_prime_UTR
TTTATTTCTATAAAATGACT+GGG 0.586086 1_2:+75837402 Msa0093010:three_prime_UTR
TTGTTTCTGTACTTAAATGT+TGG 0.588028 1_2:+75837328 Msa0093010:three_prime_UTR
GCTTGGATTATGGCAGAAAG+AGG 0.588367 1_2:+75834922 Msa0093010:CDS
ATACTCAACTCTTCTGATGT+CGG 0.590024 1_2:-75835619 None:intergenic
TCTGATGTCGGATACTGAGT+CGG 0.590760 1_2:-75835607 None:intergenic
ACTGCACATGAATACCTCCA+TGG 0.596081 1_2:-75837201 None:intergenic
CTGCACATGAATACCTCCAT+GGG 0.601771 1_2:-75837200 None:intergenic
GTCTTTGAGCATATGAAGCA+AGG 0.603316 1_2:-75834987 None:intergenic
GCTTCATATGCTCAAAGACG+AGG 0.605146 1_2:+75834991 Msa0093010:CDS
AAGCAGTGATGAGAGAGAGT+AGG 0.624754 1_2:-75834769 None:intergenic
GTAACGCAATTCGTCTTCTG+AGG 0.630635 1_2:-75837111 None:intergenic
ATTTACCTTACCCTTGCCAG+TGG 0.635981 1_2:-75837156 None:intergenic
TGCAATGCAGGTAGATGCAG+TGG 0.654691 1_2:+75836953 Msa0093010:intron
CTCAAATGTCCGACCCATGG+AGG 0.662910 1_2:+75837187 Msa0093010:CDS
ACATGAATACCTCCATGGGT+CGG 0.682919 1_2:-75837196 None:intergenic
TTTGAGCATATGAAGCAAGG+TGG 0.690241 1_2:-75834984 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATGATAATAATAAGT+GGG - chr1_2:75835032-75835051 None:intergenic 10.0%
!! ATAATAATGATAATAATAAG+TGG - chr1_2:75835033-75835052 None:intergenic 10.0%
!!! TATTTTTCATTTCTAAAATA+CGG + chr1_2:75837455-75837474 Msa0093010:three_prime_UTR 10.0%
!! ATATCTTAATCATGAAAATT+TGG + chr1_2:75835779-75835798 Msa0093010:intron 15.0%
!!! TTTTATTTCTATAAAATGAC+TGG + chr1_2:75837401-75837420 Msa0093010:three_prime_UTR 15.0%
!!! TTTATTTCTATAAAATGACT+GGG + chr1_2:75837402-75837421 Msa0093010:three_prime_UTR 15.0%
!!! ATAGAATATTTTGTAGTCAA+AGG + chr1_2:75835123-75835142 Msa0093010:intron 20.0%
!!! AAGTTTAAAGCTTTTGATTT+GGG + chr1_2:75835652-75835671 Msa0093010:CDS 20.0%
!! AGACATAATATAATATAGGA+AGG - chr1_2:75835816-75835835 None:intergenic 20.0%
!! TCCTATATTATATTATGTCT+TGG + chr1_2:75835816-75835835 Msa0093010:intron 20.0%
!! TCCAAGACATAATATAATAT+AGG - chr1_2:75835820-75835839 None:intergenic 20.0%
!! TCAAAGTCAAATTAATTCAA+CGG - chr1_2:75836377-75836396 None:intergenic 20.0%
!! AGCAATAGTATAAAATGAAA+AGG - chr1_2:75836804-75836823 None:intergenic 20.0%
!! TATTACCGATATTGTTCTTT+TGG + chr1_2:75835050-75835069 Msa0093010:intron 25.0%
!!! TTACTGTTGATAATGTTTTG+TGG + chr1_2:75835097-75835116 Msa0093010:intron 25.0%
! TAAACATATCTCAACAAAAG+TGG - chr1_2:75835333-75835352 None:intergenic 25.0%
!! GTTTCTTTTATGATGAGAAT+TGG + chr1_2:75835558-75835577 Msa0093010:intron 25.0%
!!! CAAGTTTAAAGCTTTTGATT+TGG + chr1_2:75835651-75835670 Msa0093010:CDS 25.0%
!!! AGTTTAAAGCTTTTGATTTG+GGG + chr1_2:75835653-75835672 Msa0093010:CDS 25.0%
! ATTATATTATGTCTTGGACT+TGG + chr1_2:75835822-75835841 Msa0093010:intron 25.0%
!!! GTAACTTTATTTTGTTTGTG+TGG + chr1_2:75835851-75835870 Msa0093010:intron 25.0%
! TCTTATGTTCTTTACCATAA+TGG + chr1_2:75835983-75836002 Msa0093010:intron 25.0%
! ATACAATGGATAGAATAGAA+GGG - chr1_2:75836306-75836325 None:intergenic 25.0%
! TATACAATGGATAGAATAGA+AGG - chr1_2:75836307-75836326 None:intergenic 25.0%
! TTATAAGCTACTGTATACAA+TGG - chr1_2:75836320-75836339 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG - chr1_2:75836552-75836571 None:intergenic 25.0%
!!! GAATATCAATTTTGTTTCCA+AGG - chr1_2:75837082-75837101 None:intergenic 25.0%
!!! TTGTTTCTGTACTTAAATGT+TGG + chr1_2:75837328-75837347 Msa0093010:three_prime_UTR 25.0%
! ATCGTAAAAGACGATGTTTT+TGG + chr1_2:75834871-75834890 Msa0093010:exon 30.0%
!!! TTTTTGGTGGATTGGTTTTA+CGG + chr1_2:75834887-75834906 Msa0093010:CDS 30.0%
CCATTCCAAAAGAACAATAT+CGG - chr1_2:75835058-75835077 None:intergenic 30.0%
!!! ATTGTTCTTTTGGAATGGAA+CGG + chr1_2:75835060-75835079 Msa0093010:intron 30.0%
TTTACACTTATTACTGTCAG+CGG + chr1_2:75835157-75835176 Msa0093010:intron 30.0%
TGAGATATGTTTATCCAAAC+AGG + chr1_2:75835340-75835359 Msa0093010:intron 30.0%
AACACACCAAAACAAGTTAA+GGG - chr1_2:75835366-75835385 None:intergenic 30.0%
AGAAACATTATACCAAGACT+CGG - chr1_2:75835544-75835563 None:intergenic 30.0%
!!! GTTTAAAGCTTTTGATTTGG+GGG + chr1_2:75835654-75835673 Msa0093010:CDS 30.0%
!!! TTTAAAGCTTTTGATTTGGG+GGG + chr1_2:75835655-75835674 Msa0093010:CDS 30.0%
TATAGAACTGCCTAAGATAT+TGG + chr1_2:75835917-75835936 Msa0093010:intron 30.0%
AGATTCTAAGCCAATATCTT+AGG - chr1_2:75835930-75835949 None:intergenic 30.0%
AAATGACTGTGTTTCCATTA+TGG - chr1_2:75836000-75836019 None:intergenic 30.0%
TGTAAGAGAAACCATTAGAA+AGG + chr1_2:75836076-75836095 Msa0093010:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr1_2:75836085-75836104 Msa0093010:intron 30.0%
! CAATGAGTTGGATTCAAATA+TGG + chr1_2:75836109-75836128 Msa0093010:intron 30.0%
TGGTTTATGATAGAACACTA+TGG + chr1_2:75836129-75836148 Msa0093010:intron 30.0%
! GTTTTGCTTATAATAGTGAC+CGG - chr1_2:75836587-75836606 None:intergenic 30.0%
! GTTTTGCTTATAATAGTGAC+CGG + chr1_2:75836587-75836606 Msa0093010:intron 30.0%
AAAATACTACTTCATGTTCG+AGG - chr1_2:75836660-75836679 None:intergenic 30.0%
! AAACCATCAAGTTTGTTTCT+CGG - chr1_2:75836717-75836736 None:intergenic 30.0%
TCTCAGTTTAATATTGAGCA+GGG - chr1_2:75836753-75836772 None:intergenic 30.0%
TTCTCAGTTTAATATTGAGC+AGG - chr1_2:75836754-75836773 None:intergenic 30.0%
AGTACCTTATAAGACATTTC+TGG + chr1_2:75836827-75836846 Msa0093010:intron 30.0%
!! AAGATTTGCTGAGTCAAAAA+AGG + chr1_2:75837004-75837023 Msa0093010:CDS 30.0%
TGCAGTATTGTGAAGAAAAT+GGG + chr1_2:75837218-75837237 Msa0093010:CDS 30.0%
!! ATTGTGAAGAAAATGGGTTA+TGG + chr1_2:75837224-75837243 Msa0093010:CDS 30.0%
!! TTATGGTGATGGTTTCAAAT+GGG + chr1_2:75837241-75837260 Msa0093010:CDS 30.0%
TAGAGTTCTTTAGTAAGAGA+TGG + chr1_2:75837281-75837300 Msa0093010:exon 30.0%
!! TTAAATGTTGGAAGTGTTGT+TGG + chr1_2:75837340-75837359 Msa0093010:three_prime_UTR 30.0%
CCAAAAATTAACTGAACTGT+AGG - chr1_2:75837430-75837449 None:intergenic 30.0%
! CCTACAGTTCAGTTAATTTT+TGG + chr1_2:75837427-75837446 Msa0093010:three_prime_UTR 30.0%
!!! GTAAAAGACGATGTTTTTGG+TGG + chr1_2:75834874-75834893 Msa0093010:exon 35.0%
!!! TTTTGGTGGATTGGTTTTAC+GGG + chr1_2:75834888-75834907 Msa0093010:CDS 35.0%
GAGGCTAAGATCTTATTCTT+AGG + chr1_2:75834941-75834960 Msa0093010:CDS 35.0%
!! CCGATATTGTTCTTTTGGAA+TGG + chr1_2:75835055-75835074 Msa0093010:intron 35.0%
CAACACACCAAAACAAGTTA+AGG - chr1_2:75835367-75835386 None:intergenic 35.0%
AGAAACCAGAAAAGATTACG+TGG - chr1_2:75835471-75835490 None:intergenic 35.0%
ATATCTTTATCTCCGAGTCT+TGG + chr1_2:75835529-75835548 Msa0093010:intron 35.0%
ATACTCAACTCTTCTGATGT+CGG - chr1_2:75835622-75835641 None:intergenic 35.0%
ACATCAGAAGAGTTGAGTAT+TGG + chr1_2:75835622-75835641 Msa0093010:CDS 35.0%
CATCAGAAGAGTTGAGTATT+GGG + chr1_2:75835623-75835642 Msa0093010:CDS 35.0%
! ACAAAAAAGTATGGAAGGCA+TGG - chr1_2:75835736-75835755 None:intergenic 35.0%
!!! ATGCCTTCCATACTTTTTTG+TGG + chr1_2:75835735-75835754 Msa0093010:intron 35.0%
! TAGCCACAAAAAAGTATGGA+AGG - chr1_2:75835741-75835760 None:intergenic 35.0%
ACACTAGCCACAAAAAAGTA+TGG - chr1_2:75835745-75835764 None:intergenic 35.0%
ATGAAAATTTGGATGCCAGT+AGG + chr1_2:75835790-75835809 Msa0093010:intron 35.0%
TATAATATAGGAAGGCCTAC+TGG - chr1_2:75835808-75835827 None:intergenic 35.0%
!!! CTTTATTTTGTTTGTGTGGC+TGG + chr1_2:75835855-75835874 Msa0093010:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr1_2:75836090-75836109 None:intergenic 35.0%
! TTGAGTTTGCTTGTTCAACT+AGG + chr1_2:75836393-75836412 Msa0093010:intron 35.0%
TAATCAGATGTGCACATTCT+AGG + chr1_2:75836416-75836435 Msa0093010:intron 35.0%
AGATTAATACATACACCCTC+CGG + chr1_2:75836456-75836475 Msa0093010:intron 35.0%
TAACCGAGAAACAAACTTGA+TGG + chr1_2:75836711-75836730 Msa0093010:intron 35.0%
! GAGAAACAAACTTGATGGTT+TGG + chr1_2:75836716-75836735 Msa0093010:intron 35.0%
! AAACTTGATGGTTTGGACTT+TGG + chr1_2:75836723-75836742 Msa0093010:intron 35.0%
AGAGCCAGAAATGTCTTATA+AGG - chr1_2:75836834-75836853 None:intergenic 35.0%
TCTCCTTTCTGATGAATCAT+TGG + chr1_2:75837037-75837056 Msa0093010:CDS 35.0%
TTGCCAATGATTCATCAGAA+AGG - chr1_2:75837043-75837062 None:intergenic 35.0%
!! CAATTTTGTTTCCAAGGACA+AGG - chr1_2:75837076-75837095 None:intergenic 35.0%
GTGCAGTATTGTGAAGAAAA+TGG + chr1_2:75837217-75837236 Msa0093010:CDS 35.0%
!! AAGAAAATGGGTTATGGTGA+TGG + chr1_2:75837230-75837249 Msa0093010:CDS 35.0%
!! GTTATGGTGATGGTTTCAAA+TGG + chr1_2:75837240-75837259 Msa0093010:CDS 35.0%
TTCTTTAGTAAGAGATGGCT+TGG + chr1_2:75837286-75837305 Msa0093010:three_prime_UTR 35.0%
!!! AGACGATGTTTTTGGTGGAT+TGG + chr1_2:75834879-75834898 Msa0093010:exon 40.0%
!!! TTTGGTGGATTGGTTTTACG+GGG + chr1_2:75834889-75834908 Msa0093010:CDS 40.0%
TTCTAGCATCGCTTGGATTA+TGG + chr1_2:75834912-75834931 Msa0093010:CDS 40.0%
TTTGAGCATATGAAGCAAGG+TGG - chr1_2:75834987-75835006 None:intergenic 40.0%
GTCTTTGAGCATATGAAGCA+AGG - chr1_2:75834990-75835009 None:intergenic 40.0%
AAACAAGTTAAGGGCCTGTT+TGG - chr1_2:75835357-75835376 None:intergenic 40.0%
!!! AACAGGCCCTTAACTTGTTT+TGG + chr1_2:75835357-75835376 Msa0093010:intron 40.0%
!!! TTGTTTTGGTGTGTTGCTCT+TGG + chr1_2:75835371-75835390 Msa0093010:intron 40.0%
! TTCGACCACGTAATCTTTTC+TGG + chr1_2:75835463-75835482 Msa0093010:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr1_2:75836097-75836116 Msa0093010:intron 40.0%
CAACGGCAGAAATGATTCAA+CGG - chr1_2:75836360-75836379 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr1_2:75836591-75836610 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr1_2:75836590-75836609 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr1_2:75836590-75836609 Msa0093010:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr1_2:75836591-75836610 Msa0093010:intron 40.0%
GGTGTATACTCTACTTGCTT+TGG + chr1_2:75836612-75836631 Msa0093010:intron 40.0%
GTATACTCTACTTGCTTTGG+TGG + chr1_2:75836615-75836634 Msa0093010:intron 40.0%
AACTGAGAAACATTACGTGC+TGG + chr1_2:75836891-75836910 Msa0093010:intron 40.0%
ATCATGAGTTGTTGCAATGC+AGG + chr1_2:75836941-75836960 Msa0093010:intron 40.0%
! CTTGGTTGATGCTTATGACA+AGG + chr1_2:75836980-75836999 Msa0093010:CDS 40.0%
TGCTGAGTCAAAAAAGGAGT+TGG + chr1_2:75837010-75837029 Msa0093010:CDS 40.0%
TGTTTCCAAGGACAAGGAAA+GGG - chr1_2:75837070-75837089 None:intergenic 40.0%
TTGTTTCCAAGGACAAGGAA+AGG - chr1_2:75837071-75837090 None:intergenic 40.0%
AGACGAATTGCGTTACCATT+TGG + chr1_2:75837118-75837137 Msa0093010:CDS 40.0%
GACGAATTGCGTTACCATTT+GGG + chr1_2:75837119-75837138 Msa0093010:CDS 40.0%
AGTGATGAGAGAGAGTAGGT+TGG - chr1_2:75834768-75834787 None:intergenic 45.0%
AAGCAGTGATGAGAGAGAGT+AGG - chr1_2:75834772-75834791 None:intergenic 45.0%
CTCTCTCTCATCACTGCTTT+CGG + chr1_2:75834773-75834792 Msa0093010:five_prime_UTR 45.0%
TCTCTCTCATCACTGCTTTC+GGG + chr1_2:75834774-75834793 Msa0093010:five_prime_UTR 45.0%
GAGACGAATTTCACGTTGTG+AGG - chr1_2:75834821-75834840 None:intergenic 45.0%
GCTTGGATTATGGCAGAAAG+AGG + chr1_2:75834922-75834941 Msa0093010:CDS 45.0%
!! ATGAAGCAAGGTGGTTTTGC+CGG - chr1_2:75834978-75834997 None:intergenic 45.0%
GCTTCATATGCTCAAAGACG+AGG + chr1_2:75834991-75835010 Msa0093010:CDS 45.0%
! TACTGTCAGCGGAGTTTTCT+AGG + chr1_2:75835168-75835187 Msa0093010:intron 45.0%
TCTGATGTCGGATACTGAGT+CGG - chr1_2:75835610-75835629 None:intergenic 45.0%
ATCAGATTGCTCGTAGAGTC+TGG + chr1_2:75835680-75835699 Msa0093010:CDS 45.0%
CTGGAAAGATTACTATGCCC+AGG + chr1_2:75835699-75835718 Msa0093010:CDS 45.0%
GCATGGAAAAAGAGAGACCT+GGG - chr1_2:75835719-75835738 None:intergenic 45.0%
!! TTTTGTTTGTGTGGCTGGAC+TGG + chr1_2:75835860-75835879 Msa0093010:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_2:75836178-75836197 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_2:75836179-75836198 None:intergenic 45.0%
CAAGTAGAGTATACACCCTC+CGG - chr1_2:75836609-75836628 None:intergenic 45.0%
AATGTCCCTTTCCTTGTCCT+TGG + chr1_2:75837062-75837081 Msa0093010:CDS 45.0%
GTAACGCAATTCGTCTTCTG+AGG - chr1_2:75837114-75837133 None:intergenic 45.0%
TGAAGTTGCTCAAGCCCAAA+TGG - chr1_2:75837136-75837155 None:intergenic 45.0%
ATTTACCTTACCCTTGCCAG+TGG - chr1_2:75837159-75837178 None:intergenic 45.0%
ACATGAATACCTCCATGGGT+CGG - chr1_2:75837199-75837218 None:intergenic 45.0%
CTGCACATGAATACCTCCAT+GGG - chr1_2:75837203-75837222 None:intergenic 45.0%
ACTGCACATGAATACCTCCA+TGG - chr1_2:75837204-75837223 None:intergenic 45.0%
CTCTCTCATCACTGCTTTCG+GGG + chr1_2:75834775-75834794 Msa0093010:five_prime_UTR 50.0%
TCATCACTGCTTTCGGGGTT+AGG + chr1_2:75834780-75834799 Msa0093010:five_prime_UTR 50.0%
ACTGCTTTCGGGGTTAGGTT+AGG + chr1_2:75834785-75834804 Msa0093010:five_prime_UTR 50.0%
TTCTTAGGTCTCGACAACGC+CGG + chr1_2:75834956-75834975 Msa0093010:CDS 50.0%
GGCATGGAAAAAGAGAGACC+TGG - chr1_2:75835720-75835739 None:intergenic 50.0%
ACTAAGTGGGGTCAGGTACA+TGG - chr1_2:75836166-75836185 None:intergenic 50.0%
ATGTACCTGACCCCACTTAG+TGG + chr1_2:75836165-75836184 Msa0093010:intron 50.0%
TGTACCTGACCCCACTTAGT+GGG + chr1_2:75836166-75836185 Msa0093010:intron 50.0%
TTATCCCACTAAGTGGGGTC+AGG - chr1_2:75836173-75836192 None:intergenic 50.0%
TGACCCCACTTAGTGGGATA+AGG + chr1_2:75836172-75836191 Msa0093010:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_2:75836180-75836199 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_2:75836177-75836196 Msa0093010:intron 50.0%
TGCAATGCAGGTAGATGCAG+TGG + chr1_2:75836953-75836972 Msa0093010:intron 50.0%
GGTAGATGCAGTGGTCTACT+TGG + chr1_2:75836962-75836981 Msa0093010:intron 50.0%
!! TCGTCTTCTGAGGCAGCATA+TGG - chr1_2:75837104-75837123 None:intergenic 50.0%
AGCAACTTCACCACTGGCAA+GGG + chr1_2:75837146-75837165 Msa0093010:CDS 50.0%
AGACTCAAATGTCCGACCCA+TGG + chr1_2:75837184-75837203 Msa0093010:CDS 50.0%
! TACGGGGTTCTAGCATCGCT+TGG + chr1_2:75834905-75834924 Msa0093010:CDS 55.0%
GATACTGAGTCGGCTGATGC+TGG - chr1_2:75835600-75835619 None:intergenic 55.0%
GGCTTGAGCAACTTCACCAC+TGG + chr1_2:75837140-75837159 Msa0093010:CDS 55.0%
GAGCAACTTCACCACTGGCA+AGG + chr1_2:75837145-75837164 Msa0093010:CDS 55.0%
CTTCACCACTGGCAAGGGTA+AGG + chr1_2:75837151-75837170 Msa0093010:CDS 55.0%
CTCAAATGTCCGACCCATGG+AGG + chr1_2:75837187-75837206 Msa0093010:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 75834709 75837489 75834709 ID=Msa0093010;Name=Msa0093010
chr1_2 mRNA 75834709 75837489 75834709 ID=Msa0093010-mRNA-1;Parent=Msa0093010;Name=Msa0093010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=175|1|1|1|1|1|3|206|193
chr1_2 exon 75834709 75835012 75834709 ID=Msa0093010-mRNA-1:exon:26687;Parent=Msa0093010-mRNA-1
chr1_2 exon 75835589 75835720 75835589 ID=Msa0093010-mRNA-1:exon:26688;Parent=Msa0093010-mRNA-1
chr1_2 exon 75836963 75837489 75836963 ID=Msa0093010-mRNA-1:exon:26689;Parent=Msa0093010-mRNA-1
chr1_2 five_prime_UTR 75834709 75834883 75834709 ID=Msa0093010-mRNA-1:five_prime_utr;Parent=Msa0093010-mRNA-1
chr1_2 CDS 75834884 75835012 75834884 ID=Msa0093010-mRNA-1:cds;Parent=Msa0093010-mRNA-1
chr1_2 CDS 75835589 75835720 75835589 ID=Msa0093010-mRNA-1:cds;Parent=Msa0093010-mRNA-1
chr1_2 CDS 75836963 75837283 75836963 ID=Msa0093010-mRNA-1:cds;Parent=Msa0093010-mRNA-1
chr1_2 three_prime_UTR 75837284 75837489 75837284 ID=Msa0093010-mRNA-1:three_prime_utr;Parent=Msa0093010-mRNA-1
Gene Sequence

>Msa0093010

ATGTTTTTGGTGGATTGGTTTTACGGGGTTCTAGCATCGCTTGGATTATGGCAGAAAGAGGCTAAGATCTTATTCTTAGGTCTCGACAACGCCGGCAAAACCACCTTGCTTCATATGCTCAAAGACGAGAGATTAGTCCAGCATCAGCCGACTCAGTATCCGACATCAGAAGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATTTGGGGGGTCATCAGATTGCTCGTAGAGTCTGGAAAGATTACTATGCCCAGGTAGATGCAGTGGTCTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAGGAGTTGGATGCTCTCCTTTCTGATGAATCATTGGCAAATGTCCCTTTCCTTGTCCTTGGAAACAAAATTGATATTCCATATGCTGCCTCAGAAGACGAATTGCGTTACCATTTGGGCTTGAGCAACTTCACCACTGGCAAGGGTAAGGTAAATTTGTCAGACTCAAATGTCCGACCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGTGATGGTTTCAAATGGGTTTCTCAGTACATCAAATAG

Protein sequence

>Msa0093010

MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLSDSNVRPMEVFMCSIVKKMGYGDGFKWVSQYIK*