AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0603570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603570 MtrunA17_Chr1g0212341 52.147 163 46 2 64 211 65 210 6.11e-30 110
Msa0603570 MtrunA17_Chr8g0342651 81.081 37 7 0 64 100 149 185 3.17e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 74 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCATGAAAATAATGTTAA+TGG 0.222271 4_2:+48141972 Msa0603570:five_prime_UTR
CGTAGCAGCGGTGCAAATTC+TGG 0.247365 4_2:-48142220 None:intergenic
AGAGCTTCGCGCAGCTAAAT+TGG 0.265099 4_2:+48142679 Msa0603570:CDS
CTATTGAACCGGCTTGATTT+AGG 0.266233 4_2:+48143833 Msa0603570:three_prime_UTR
GAGGAGTAGTGGTAGCATTT+TGG 0.290072 4_2:+48143789 Msa0603570:exon
TAGGCTAAAGCTGTATAGTT+TGG 0.319936 4_2:+48143852 Msa0603570:three_prime_UTR
TAACTGATGGATCTGTTAGA+TGG 0.337247 4_2:+48144095 Msa0603570:three_prime_UTR
TCCATGGCCTTCGTATATTC+TGG 0.356360 4_2:-48143241 None:intergenic
CTGAAACTTGATAATGCATT+TGG 0.359474 4_2:-48144021 None:intergenic
AGTAAGCGACGACCGTATAA+TGG 0.369966 4_2:-48142572 None:intergenic
TTAGGCGAAGTATCATTCTT+TGG 0.371753 4_2:+48143198 Msa0603570:intron
TTAATGGAAACTTTCGTCTC+TGG 0.383166 4_2:+48141988 Msa0603570:five_prime_UTR
GTTATATAAGTGCGAAGATA+TGG 0.394475 4_2:+48142625 Msa0603570:CDS
TCTTCCACCTCTCCTGGTGC+AGG 0.394878 4_2:-48143756 None:intergenic
GTGTGCGGGTTGCTCATATT+TGG 0.404074 4_2:-48142017 None:intergenic
ACTTGATTTCTCTATTGAAC+CGG 0.410703 4_2:+48143822 Msa0603570:three_prime_UTR
TAAAATTGTTTAGGAGAAGA+AGG 0.423795 4_2:+48143545 Msa0603570:intron
CAACCCGCACACACATCTTC+GGG 0.428335 4_2:+48142028 Msa0603570:five_prime_UTR
GGGATATGATAAGGAAGATA+AGG 0.437427 4_2:+48143707 Msa0603570:CDS
GCAACCCGCACACACATCTT+CGG 0.441635 4_2:+48142027 Msa0603570:five_prime_UTR
ACATGATCGCAGGATATAGA+AGG 0.446274 4_2:-48143990 None:intergenic
CTTCCACCTCTCCTGGTGCA+GGG 0.450689 4_2:-48143755 None:intergenic
GTTAACTCTTCCACCTCTCC+TGG 0.451248 4_2:-48143762 None:intergenic
AAAAGAACCAACTGCGAAAA+GGG 0.458718 4_2:+48142875 Msa0603570:CDS
GGATCAGGAGGGATATGATA+AGG 0.465606 4_2:+48143698 Msa0603570:intron
CAAAAGAACCAACTGCGAAA+AGG 0.465631 4_2:+48142874 Msa0603570:CDS
GGAAGGCCAATCTGATGATA+AGG 0.467371 4_2:+48143728 Msa0603570:CDS
CCGTATAATGGATGATCCTT+CGG 0.481434 4_2:-48142560 None:intergenic
AGCCCCTGCACCAGGAGAGG+TGG 0.481468 4_2:+48143752 Msa0603570:CDS
GGGCTTCCTTATCATCAGAT+TGG 0.481597 4_2:-48143734 None:intergenic
TTCCACCTCTCCTGGTGCAG+GGG 0.483421 4_2:-48143754 None:intergenic
CAGAATTTGCACCGCTGCTA+CGG 0.492344 4_2:+48142221 Msa0603570:five_prime_UTR
CCGAAGGATCATCCATTATA+CGG 0.492521 4_2:+48142560 Msa0603570:CDS
GGTGGACGCTAAATTTGATC+TGG 0.493294 4_2:+48142646 Msa0603570:CDS
GAAGTCCATGGTGGCGGCAA+GGG 0.504427 4_2:-48142531 None:intergenic
CACATAGAATAGAAATCAAA+CGG 0.508008 4_2:+48142069 Msa0603570:five_prime_UTR
AGTTAACAGATGAGGAGTAG+TGG 0.515594 4_2:+48143778 Msa0603570:CDS
GATAAGGAAGCCCCTGCACC+AGG 0.518868 4_2:+48143744 Msa0603570:CDS
CTGCGAAAAGGGCTAAAGTT+GGG 0.522171 4_2:+48142886 Msa0603570:CDS
GGCAAGTTTAACATGATCGC+AGG 0.528195 4_2:-48144000 None:intergenic
TATGTTGGTTAGGAAGCTAC+TGG 0.528713 4_2:+48143046 Msa0603570:intron
AACTGATGGATCTGTTAGAT+GGG 0.532845 4_2:+48144096 Msa0603570:three_prime_UTR
CGAAGTCCATGGTGGCGGCA+AGG 0.534336 4_2:-48142532 None:intergenic
ACTGCGAAAAGGGCTAAAGT+TGG 0.541934 4_2:+48142885 Msa0603570:CDS
GAAGCGGAGGTCTTTGACTG+AGG 0.562628 4_2:+48143072 Msa0603570:CDS
CTTCGGCAACTCGAAGTCCA+TGG 0.573587 4_2:-48142543 None:intergenic
GGAAGCCCCTGCACCAGGAG+AGG 0.576902 4_2:+48143749 Msa0603570:CDS
GGTGGAAGAGTTAACAGATG+AGG 0.581307 4_2:+48143770 Msa0603570:CDS
AAAAGGGCTAAAGTTGGGAA+AGG 0.581404 4_2:+48142891 Msa0603570:CDS
AGAAACCCTTGCCGCCACCA+TGG 0.582020 4_2:+48142526 Msa0603570:intron
GTTAGGAAGCTGCTGTGAAG+TGG 0.586151 4_2:+48143412 Msa0603570:intron
TATTTATGTTTAGGATCAGG+AGG 0.589442 4_2:+48143686 Msa0603570:intron
AGCAGCAGCATACAATTCCA+TGG 0.590575 4_2:-48143257 None:intergenic
CAACTCGAAGTCCATGGTGG+CGG 0.590742 4_2:-48142537 None:intergenic
AGCTTTAGCCTAAATCAAGC+CGG 0.591356 4_2:-48143841 None:intergenic
ATTTCTATTCTATGTGCATG+TGG 0.592603 4_2:-48142062 None:intergenic
GCCAGAATATACGAAGGCCA+TGG 0.602963 4_2:+48143240 Msa0603570:CDS
AAGCTACTGGTGAGAAGCGG+AGG 0.606898 4_2:+48143059 Msa0603570:CDS
GGCAGCATTATACAAATGCA+TGG 0.610143 4_2:-48143568 None:intergenic
ATTTATGTTTAGGATCAGGA+GGG 0.610871 4_2:+48143687 Msa0603570:intron
GGAAGCTGCTGTGAAGTGGA+TGG 0.615800 4_2:+48143416 Msa0603570:intron
AAAGGGCTAAAGTTGGGAAA+GGG 0.618574 4_2:+48142892 Msa0603570:CDS
TATGATAAGGAAGATAAGGA+AGG 0.621270 4_2:+48143711 Msa0603570:CDS
CATGGACTTCGAGTTGCCGA+AGG 0.626145 4_2:+48142544 Msa0603570:exon
GAAGTGGATGGCTTTGATTG+AGG 0.630707 4_2:+48143428 Msa0603570:CDS
CAGGCATTAGCAATATTCCA+AGG 0.633492 4_2:-48143940 None:intergenic
ATATAAGTGCGAAGATATGG+TGG 0.645712 4_2:+48142628 Msa0603570:CDS
CAATGAAAGTACCGTAGCAG+CGG 0.646917 4_2:-48142232 None:intergenic
TTACCCGAAGATGTGTGTGC+GGG 0.651696 4_2:-48142031 None:intergenic
AGGAAGCTACTGGTGAGAAG+CGG 0.661605 4_2:+48143056 Msa0603570:intron
CTGAAGTGAAGAAACCTGAG+AGG 0.670696 4_2:+48142744 Msa0603570:CDS
CGGCAACTCGAAGTCCATGG+TGG 0.699208 4_2:-48142540 None:intergenic
ATTACCCGAAGATGTGTGTG+CGG 0.702712 4_2:-48142032 None:intergenic
ACGCAGGCCAGAATATACGA+AGG 0.729822 4_2:+48143234 Msa0603570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGGTTTATTTATTTATTT+TGG + chr4_2:48142827-48142846 Msa0603570:intron 10.0%
!!! TTAGGTTTATTTATTTATTT+TGG + chr4_2:48142827-48142846 Msa0603570:intron 10.0%
!!! TATTTATTTTGGAATTTTGT+AGG + chr4_2:48142838-48142857 Msa0603570:intron 15.0%
!! ATGTATTGAAAAAATTATGT+TGG + chr4_2:48143031-48143050 Msa0603570:intron 15.0%
!!! TATTTATTTTGGAATTTTGT+AGG + chr4_2:48142838-48142857 Msa0603570:intron 15.0%
!! ATGTATTGAAAAAATTATGT+TGG + chr4_2:48143031-48143050 Msa0603570:intron 15.0%
!! GTTCATGAAAATAATGTTAA+TGG + chr4_2:48141972-48141991 Msa0603570:five_prime_UTR 20.0%
!! AATCAATTTATGTCGAAAAA+CGG + chr4_2:48142370-48142389 Msa0603570:intron 20.0%
!! AATATTCACAGACTAAAATT+GGG - chr4_2:48142782-48142801 None:intergenic 20.0%
!!! AAATGAAGTATGTTTTCTTT+TGG + chr4_2:48142941-48142960 Msa0603570:intron 20.0%
!!! AATGAAGTATGTTTTCTTTT+GGG + chr4_2:48142942-48142961 Msa0603570:intron 20.0%
!! TTGTTTGATTAACTTATCTA+AGG + chr4_2:48142987-48143006 Msa0603570:intron 20.0%
!!! TTGAAAAAATTATGTTGGTT+AGG + chr4_2:48143036-48143055 Msa0603570:intron 20.0%
!!! ATGTTTTGTTCTGTTTTTAT+TGG + chr4_2:48143112-48143131 Msa0603570:intron 20.0%
!!! TGTTTTGTTCTGTTTTTATT+GGG + chr4_2:48143113-48143132 Msa0603570:intron 20.0%
!! TGATATGGTTAAAATTGTTT+AGG + chr4_2:48143180-48143199 Msa0603570:intron 20.0%
!! TTGTTTGATTAACTTATCTA+AGG + chr4_2:48142987-48143006 Msa0603570:intron 20.0%
!! ATGCATTGAAAAAATTATGT+TGG + chr4_2:48143390-48143409 Msa0603570:intron 20.0%
!!! TTGAAAAAATTATGTTGGTT+AGG + chr4_2:48143036-48143055 Msa0603570:intron 20.0%
!! TGATATGGTTAAAATTGTTT+AGG + chr4_2:48143180-48143199 Msa0603570:intron 20.0%
!! GTTCATGAAAATAATGTTAA+TGG + chr4_2:48141972-48141991 Msa0603570:five_prime_UTR 20.0%
!! AATCAATTTATGTCGAAAAA+CGG + chr4_2:48142370-48142389 Msa0603570:intron 20.0%
!! AATATTCACAGACTAAAATT+GGG - chr4_2:48142782-48142801 None:intergenic 20.0%
!!! AAATGAAGTATGTTTTCTTT+TGG + chr4_2:48142941-48142960 Msa0603570:intron 20.0%
!!! AATGAAGTATGTTTTCTTTT+GGG + chr4_2:48142942-48142961 Msa0603570:intron 20.0%
!! TTGTTTGATTAACTTATCTA+AGG + chr4_2:48142987-48143006 Msa0603570:intron 20.0%
!!! TTGAAAAAATTATGTTGGTT+AGG + chr4_2:48143036-48143055 Msa0603570:intron 20.0%
!!! ATGTTTTGTTCTGTTTTTAT+TGG + chr4_2:48143112-48143131 Msa0603570:intron 20.0%
!!! TGTTTTGTTCTGTTTTTATT+GGG + chr4_2:48143113-48143132 Msa0603570:intron 20.0%
!! TGATATGGTTAAAATTGTTT+AGG + chr4_2:48143180-48143199 Msa0603570:intron 20.0%
!! TTGTTTGATTAACTTATCTA+AGG + chr4_2:48142987-48143006 Msa0603570:intron 20.0%
!! ATGCATTGAAAAAATTATGT+TGG + chr4_2:48143390-48143409 Msa0603570:intron 20.0%
!!! TTGAAAAAATTATGTTGGTT+AGG + chr4_2:48143036-48143055 Msa0603570:intron 20.0%
!! TGATATGGTTAAAATTGTTT+AGG + chr4_2:48143180-48143199 Msa0603570:intron 20.0%
! CACATAGAATAGAAATCAAA+CGG + chr4_2:48142069-48142088 Msa0603570:five_prime_UTR 25.0%
! TGTGTGTATTTGAAAAATTC+TGG - chr4_2:48142168-48142187 None:intergenic 25.0%
! TTCATATTTCGAAAAACCTA+AGG + chr4_2:48142338-48142357 Msa0603570:intron 25.0%
! AAAACGGTTATTCTTTGTAT+TGG + chr4_2:48142386-48142405 Msa0603570:intron 25.0%
! ATATTCACAGACTAAAATTG+GGG - chr4_2:48142781-48142800 None:intergenic 25.0%
! CAATATTCACAGACTAAAAT+TGG - chr4_2:48142783-48142802 None:intergenic 25.0%
!! TTTTAGTCTGTGAATATTGT+TGG + chr4_2:48142784-48142803 Msa0603570:intron 25.0%
!!! TCTGGTTTTTGTTAGTATTT+AGG + chr4_2:48142809-48142828 Msa0603570:intron 25.0%
!! TGCTAAAGTATGTTTTCTTT+TGG + chr4_2:48143300-48143319 Msa0603570:intron 25.0%
!! GCTAAAGTATGTTTTCTTTT+GGG + chr4_2:48143301-48143320 Msa0603570:intron 25.0%
! GTAAGTTTGATTACAATGTT+TGG + chr4_2:48143453-48143472 Msa0603570:intron 25.0%
! TAAAATTGTTTAGGAGAAGA+AGG + chr4_2:48143545-48143564 Msa0603570:intron 25.0%
!! AAATGAAGTATGTTTTCTTC+TGG + chr4_2:48143599-48143618 Msa0603570:intron 25.0%
!! AATGAAGTATGTTTTCTTCT+GGG + chr4_2:48143600-48143619 Msa0603570:intron 25.0%
!! CTATATTTATGTTTAGGATC+AGG + chr4_2:48143683-48143702 Msa0603570:intron 25.0%
!!! TCAGTAAACACTGTTTTAAT+GGG + chr4_2:48143883-48143902 Msa0603570:three_prime_UTR 25.0%
! CACATAGAATAGAAATCAAA+CGG + chr4_2:48142069-48142088 Msa0603570:five_prime_UTR 25.0%
! TGTGTGTATTTGAAAAATTC+TGG - chr4_2:48142168-48142187 None:intergenic 25.0%
! TTCATATTTCGAAAAACCTA+AGG + chr4_2:48142338-48142357 Msa0603570:intron 25.0%
! AAAACGGTTATTCTTTGTAT+TGG + chr4_2:48142386-48142405 Msa0603570:intron 25.0%
! ATATTCACAGACTAAAATTG+GGG - chr4_2:48142781-48142800 None:intergenic 25.0%
! CAATATTCACAGACTAAAAT+TGG - chr4_2:48142783-48142802 None:intergenic 25.0%
!! TTTTAGTCTGTGAATATTGT+TGG + chr4_2:48142784-48142803 Msa0603570:intron 25.0%
!!! TCTGGTTTTTGTTAGTATTT+AGG + chr4_2:48142809-48142828 Msa0603570:intron 25.0%
!! TGCTAAAGTATGTTTTCTTT+TGG + chr4_2:48143300-48143319 Msa0603570:intron 25.0%
!! GCTAAAGTATGTTTTCTTTT+GGG + chr4_2:48143301-48143320 Msa0603570:intron 25.0%
! GTAAGTTTGATTACAATGTT+TGG + chr4_2:48143453-48143472 Msa0603570:intron 25.0%
! TAAAATTGTTTAGGAGAAGA+AGG + chr4_2:48143545-48143564 Msa0603570:intron 25.0%
!! AAATGAAGTATGTTTTCTTC+TGG + chr4_2:48143599-48143618 Msa0603570:intron 25.0%
!! AATGAAGTATGTTTTCTTCT+GGG + chr4_2:48143600-48143619 Msa0603570:intron 25.0%
!! CTATATTTATGTTTAGGATC+AGG + chr4_2:48143683-48143702 Msa0603570:intron 25.0%
!!! TCAGTAAACACTGTTTTAAT+GGG + chr4_2:48143883-48143902 Msa0603570:three_prime_UTR 25.0%
! TATTTTCATGAACATGTTGC+TGG - chr4_2:48141965-48141984 None:intergenic 30.0%
ATTTCTATTCTATGTGCATG+TGG - chr4_2:48142065-48142084 None:intergenic 30.0%
TTACCTATTTCATTCTGCAT+CGG + chr4_2:48142309-48142328 Msa0603570:intron 30.0%
!! ATTGATTCGTTTACAACCTT+AGG - chr4_2:48142357-48142376 None:intergenic 30.0%
!!! TCGCTTACTAAAGCTTTTTT+CGG + chr4_2:48142586-48142605 Msa0603570:CDS 30.0%
GTTATATAAGTGCGAAGATA+TGG + chr4_2:48142625-48142644 Msa0603570:CDS 30.0%
TATTCACAGACTAAAATTGG+GGG - chr4_2:48142780-48142799 None:intergenic 30.0%
!!! TGTTCTGTTTTTATTGGGTT+TGG + chr4_2:48143118-48143137 Msa0603570:intron 30.0%
TTTATGTGATGCTGATCTAA+TGG + chr4_2:48143155-48143174 Msa0603570:intron 30.0%
!!! ATGTTTGGTTCTGTTTTGAT+TGG + chr4_2:48143468-48143487 Msa0603570:intron 30.0%
TTTATGTGATGCTGATCTAA+TGG + chr4_2:48143155-48143174 Msa0603570:intron 30.0%
!! CTGGTGCTATATTTATGTTT+AGG + chr4_2:48143677-48143696 Msa0603570:intron 30.0%
! TATTTATGTTTAGGATCAGG+AGG + chr4_2:48143686-48143705 Msa0603570:intron 30.0%
! ATTTATGTTTAGGATCAGGA+GGG + chr4_2:48143687-48143706 Msa0603570:intron 30.0%
TATGATAAGGAAGATAAGGA+AGG + chr4_2:48143711-48143730 Msa0603570:CDS 30.0%
ACTTGATTTCTCTATTGAAC+CGG + chr4_2:48143822-48143841 Msa0603570:three_prime_UTR 30.0%
!! CTCAGTAAACACTGTTTTAA+TGG + chr4_2:48143882-48143901 Msa0603570:three_prime_UTR 30.0%
! CACTTTTACTAGTAGAAAAC+AGG - chr4_2:48143962-48143981 None:intergenic 30.0%
!! CTGAAACTTGATAATGCATT+TGG - chr4_2:48144024-48144043 None:intergenic 30.0%
! TATTTTCATGAACATGTTGC+TGG - chr4_2:48141965-48141984 None:intergenic 30.0%
ATTTCTATTCTATGTGCATG+TGG - chr4_2:48142065-48142084 None:intergenic 30.0%
TTACCTATTTCATTCTGCAT+CGG + chr4_2:48142309-48142328 Msa0603570:intron 30.0%
!! ATTGATTCGTTTACAACCTT+AGG - chr4_2:48142357-48142376 None:intergenic 30.0%
!!! TCGCTTACTAAAGCTTTTTT+CGG + chr4_2:48142586-48142605 Msa0603570:CDS 30.0%
GTTATATAAGTGCGAAGATA+TGG + chr4_2:48142625-48142644 Msa0603570:CDS 30.0%
TATTCACAGACTAAAATTGG+GGG - chr4_2:48142780-48142799 None:intergenic 30.0%
!!! TGTTCTGTTTTTATTGGGTT+TGG + chr4_2:48143118-48143137 Msa0603570:intron 30.0%
TTTATGTGATGCTGATCTAA+TGG + chr4_2:48143155-48143174 Msa0603570:intron 30.0%
!!! ATGTTTGGTTCTGTTTTGAT+TGG + chr4_2:48143468-48143487 Msa0603570:intron 30.0%
TTTATGTGATGCTGATCTAA+TGG + chr4_2:48143155-48143174 Msa0603570:intron 30.0%
!! CTGGTGCTATATTTATGTTT+AGG + chr4_2:48143677-48143696 Msa0603570:intron 30.0%
! TATTTATGTTTAGGATCAGG+AGG + chr4_2:48143686-48143705 Msa0603570:intron 30.0%
! ATTTATGTTTAGGATCAGGA+GGG + chr4_2:48143687-48143706 Msa0603570:intron 30.0%
TATGATAAGGAAGATAAGGA+AGG + chr4_2:48143711-48143730 Msa0603570:CDS 30.0%
ACTTGATTTCTCTATTGAAC+CGG + chr4_2:48143822-48143841 Msa0603570:three_prime_UTR 30.0%
!! CTCAGTAAACACTGTTTTAA+TGG + chr4_2:48143882-48143901 Msa0603570:three_prime_UTR 30.0%
! CACTTTTACTAGTAGAAAAC+AGG - chr4_2:48143962-48143981 None:intergenic 30.0%
!! CTGAAACTTGATAATGCATT+TGG - chr4_2:48144024-48144043 None:intergenic 30.0%
TTAATGGAAACTTTCGTCTC+TGG + chr4_2:48141988-48142007 Msa0603570:five_prime_UTR 35.0%
ATATAAGTGCGAAGATATGG+TGG + chr4_2:48142628-48142647 Msa0603570:CDS 35.0%
!! GCAGTTGGTTCTTTTGAATT+TGG - chr4_2:48142870-48142889 None:intergenic 35.0%
AAAAGAACCAACTGCGAAAA+GGG + chr4_2:48142875-48142894 Msa0603570:CDS 35.0%
GCTGATCTAATGGTATGATA+TGG + chr4_2:48143165-48143184 Msa0603570:intron 35.0%
! TTAGGCGAAGTATCATTCTT+TGG + chr4_2:48143198-48143217 Msa0603570:intron 35.0%
!!! GGTTCTGTTTTGATTGGATT+TGG + chr4_2:48143474-48143493 Msa0603570:intron 35.0%
GCTGATCTAATGGTATGATA+TGG + chr4_2:48143165-48143184 Msa0603570:intron 35.0%
! ACATACTTCATTTTCAGCAG+TGG - chr4_2:48143592-48143611 None:intergenic 35.0%
GGGATATGATAAGGAAGATA+AGG + chr4_2:48143707-48143726 Msa0603570:CDS 35.0%
TAGGCTAAAGCTGTATAGTT+TGG + chr4_2:48143852-48143871 Msa0603570:three_prime_UTR 35.0%
! TTCTTTTCTGCATGTTCACT+AGG + chr4_2:48144061-48144080 Msa0603570:three_prime_UTR 35.0%
! TCTTTTCTGCATGTTCACTA+GGG + chr4_2:48144062-48144081 Msa0603570:three_prime_UTR 35.0%
! GGGGAAATTTTCTTAACTGA+TGG + chr4_2:48144082-48144101 Msa0603570:three_prime_UTR 35.0%
! TAACTGATGGATCTGTTAGA+TGG + chr4_2:48144095-48144114 Msa0603570:three_prime_UTR 35.0%
! AACTGATGGATCTGTTAGAT+GGG + chr4_2:48144096-48144115 Msa0603570:three_prime_UTR 35.0%
TTAATGGAAACTTTCGTCTC+TGG + chr4_2:48141988-48142007 Msa0603570:five_prime_UTR 35.0%
ATATAAGTGCGAAGATATGG+TGG + chr4_2:48142628-48142647 Msa0603570:CDS 35.0%
!! GCAGTTGGTTCTTTTGAATT+TGG - chr4_2:48142870-48142889 None:intergenic 35.0%
AAAAGAACCAACTGCGAAAA+GGG + chr4_2:48142875-48142894 Msa0603570:CDS 35.0%
GCTGATCTAATGGTATGATA+TGG + chr4_2:48143165-48143184 Msa0603570:intron 35.0%
! TTAGGCGAAGTATCATTCTT+TGG + chr4_2:48143198-48143217 Msa0603570:intron 35.0%
!!! GGTTCTGTTTTGATTGGATT+TGG + chr4_2:48143474-48143493 Msa0603570:intron 35.0%
GCTGATCTAATGGTATGATA+TGG + chr4_2:48143165-48143184 Msa0603570:intron 35.0%
! ACATACTTCATTTTCAGCAG+TGG - chr4_2:48143592-48143611 None:intergenic 35.0%
GGGATATGATAAGGAAGATA+AGG + chr4_2:48143707-48143726 Msa0603570:CDS 35.0%
TAGGCTAAAGCTGTATAGTT+TGG + chr4_2:48143852-48143871 Msa0603570:three_prime_UTR 35.0%
! TTCTTTTCTGCATGTTCACT+AGG + chr4_2:48144061-48144080 Msa0603570:three_prime_UTR 35.0%
! TCTTTTCTGCATGTTCACTA+GGG + chr4_2:48144062-48144081 Msa0603570:three_prime_UTR 35.0%
! GGGGAAATTTTCTTAACTGA+TGG + chr4_2:48144082-48144101 Msa0603570:three_prime_UTR 35.0%
! TAACTGATGGATCTGTTAGA+TGG + chr4_2:48144095-48144114 Msa0603570:three_prime_UTR 35.0%
! AACTGATGGATCTGTTAGAT+GGG + chr4_2:48144096-48144115 Msa0603570:three_prime_UTR 35.0%
GAACCGATGCAGAATGAAAT+AGG - chr4_2:48142315-48142334 None:intergenic 40.0%
!! CCGTATAATGGATGATCCTT+CGG - chr4_2:48142563-48142582 None:intergenic 40.0%
CCGAAGGATCATCCATTATA+CGG + chr4_2:48142560-48142579 Msa0603570:CDS 40.0%
!!! ACTAAAGCTTTTTTCGGACG+AGG + chr4_2:48142592-48142611 Msa0603570:CDS 40.0%
CTGTGAATATTGTTGGACTC+TGG + chr4_2:48142791-48142810 Msa0603570:intron 40.0%
CAAAAGAACCAACTGCGAAA+AGG + chr4_2:48142874-48142893 Msa0603570:CDS 40.0%
AAAAGGGCTAAAGTTGGGAA+AGG + chr4_2:48142891-48142910 Msa0603570:CDS 40.0%
AAAGGGCTAAAGTTGGGAAA+GGG + chr4_2:48142892-48142911 Msa0603570:CDS 40.0%
GGGCTTCTATGAATTGTGTT+TGG + chr4_2:48142962-48142981 Msa0603570:intron 40.0%
! TATGTTGGTTAGGAAGCTAC+TGG + chr4_2:48143046-48143065 Msa0603570:intron 40.0%
! TGGTTAGAGTTTTTGAACGC+AGG + chr4_2:48143218-48143237 Msa0603570:CDS 40.0%
GGGCTTCTATGAATTGTGTT+TGG + chr4_2:48142962-48142981 Msa0603570:intron 40.0%
GGCAGCATTATACAAATGCA+TGG - chr4_2:48143571-48143590 None:intergenic 40.0%
!!! TTTGCTCTCTTTTCTGAAGC+TGG + chr4_2:48143658-48143677 Msa0603570:intron 40.0%
AGTTAACAGATGAGGAGTAG+TGG + chr4_2:48143778-48143797 Msa0603570:CDS 40.0%
!! CTATTGAACCGGCTTGATTT+AGG + chr4_2:48143833-48143852 Msa0603570:three_prime_UTR 40.0%
! AGCTTTAGCCTAAATCAAGC+CGG - chr4_2:48143844-48143863 None:intergenic 40.0%
! ATATCTTTTCGCACTGTCCT+TGG + chr4_2:48143923-48143942 Msa0603570:three_prime_UTR 40.0%
CAGGCATTAGCAATATTCCA+AGG - chr4_2:48143943-48143962 None:intergenic 40.0%
ACATGATCGCAGGATATAGA+AGG - chr4_2:48143993-48144012 None:intergenic 40.0%
! CTTTTCTGCATGTTCACTAG+GGG + chr4_2:48144063-48144082 Msa0603570:three_prime_UTR 40.0%
GAACCGATGCAGAATGAAAT+AGG - chr4_2:48142315-48142334 None:intergenic 40.0%
!! CCGTATAATGGATGATCCTT+CGG - chr4_2:48142563-48142582 None:intergenic 40.0%
CCGAAGGATCATCCATTATA+CGG + chr4_2:48142560-48142579 Msa0603570:CDS 40.0%
!!! ACTAAAGCTTTTTTCGGACG+AGG + chr4_2:48142592-48142611 Msa0603570:CDS 40.0%
CTGTGAATATTGTTGGACTC+TGG + chr4_2:48142791-48142810 Msa0603570:intron 40.0%
CAAAAGAACCAACTGCGAAA+AGG + chr4_2:48142874-48142893 Msa0603570:CDS 40.0%
AAAAGGGCTAAAGTTGGGAA+AGG + chr4_2:48142891-48142910 Msa0603570:CDS 40.0%
AAAGGGCTAAAGTTGGGAAA+GGG + chr4_2:48142892-48142911 Msa0603570:CDS 40.0%
GGGCTTCTATGAATTGTGTT+TGG + chr4_2:48142962-48142981 Msa0603570:intron 40.0%
! TATGTTGGTTAGGAAGCTAC+TGG + chr4_2:48143046-48143065 Msa0603570:intron 40.0%
! TGGTTAGAGTTTTTGAACGC+AGG + chr4_2:48143218-48143237 Msa0603570:CDS 40.0%
GGGCTTCTATGAATTGTGTT+TGG + chr4_2:48142962-48142981 Msa0603570:intron 40.0%
GGCAGCATTATACAAATGCA+TGG - chr4_2:48143571-48143590 None:intergenic 40.0%
!!! TTTGCTCTCTTTTCTGAAGC+TGG + chr4_2:48143658-48143677 Msa0603570:intron 40.0%
AGTTAACAGATGAGGAGTAG+TGG + chr4_2:48143778-48143797 Msa0603570:CDS 40.0%
!! CTATTGAACCGGCTTGATTT+AGG + chr4_2:48143833-48143852 Msa0603570:three_prime_UTR 40.0%
! AGCTTTAGCCTAAATCAAGC+CGG - chr4_2:48143844-48143863 None:intergenic 40.0%
! ATATCTTTTCGCACTGTCCT+TGG + chr4_2:48143923-48143942 Msa0603570:three_prime_UTR 40.0%
CAGGCATTAGCAATATTCCA+AGG - chr4_2:48143943-48143962 None:intergenic 40.0%
ACATGATCGCAGGATATAGA+AGG - chr4_2:48143993-48144012 None:intergenic 40.0%
! CTTTTCTGCATGTTCACTAG+GGG + chr4_2:48144063-48144082 Msa0603570:three_prime_UTR 40.0%
ATTACCCGAAGATGTGTGTG+CGG - chr4_2:48142035-48142054 None:intergenic 45.0%
!! CAATGAAAGTACCGTAGCAG+CGG - chr4_2:48142235-48142254 None:intergenic 45.0%
AGTAAGCGACGACCGTATAA+TGG - chr4_2:48142575-48142594 None:intergenic 45.0%
GGTGGACGCTAAATTTGATC+TGG + chr4_2:48142646-48142665 Msa0603570:CDS 45.0%
CTGAAGTGAAGAAACCTGAG+AGG + chr4_2:48142744-48142763 Msa0603570:CDS 45.0%
GGGGAAAAATTTCACCTCTC+AGG - chr4_2:48142761-48142780 None:intergenic 45.0%
! ACTTTAGCCCTTTTCGCAGT+TGG - chr4_2:48142885-48142904 None:intergenic 45.0%
ACTGCGAAAAGGGCTAAAGT+TGG + chr4_2:48142885-48142904 Msa0603570:CDS 45.0%
CTGCGAAAAGGGCTAAAGTT+GGG + chr4_2:48142886-48142905 Msa0603570:CDS 45.0%
TCCATGGCCTTCGTATATTC+TGG - chr4_2:48143244-48143263 None:intergenic 45.0%
AGCAGCAGCATACAATTCCA+TGG - chr4_2:48143260-48143279 None:intergenic 45.0%
!! GAAGTGGATGGCTTTGATTG+AGG + chr4_2:48143428-48143447 Msa0603570:CDS 45.0%
GGATCAGGAGGGATATGATA+AGG + chr4_2:48143698-48143717 Msa0603570:intron 45.0%
GGAAGGCCAATCTGATGATA+AGG + chr4_2:48143728-48143747 Msa0603570:CDS 45.0%
GGGCTTCCTTATCATCAGAT+TGG - chr4_2:48143737-48143756 None:intergenic 45.0%
GGTGGAAGAGTTAACAGATG+AGG + chr4_2:48143770-48143789 Msa0603570:CDS 45.0%
! GAGGAGTAGTGGTAGCATTT+TGG + chr4_2:48143789-48143808 Msa0603570:exon 45.0%
GGCAAGTTTAACATGATCGC+AGG - chr4_2:48144003-48144022 None:intergenic 45.0%
ATTACCCGAAGATGTGTGTG+CGG - chr4_2:48142035-48142054 None:intergenic 45.0%
!! CAATGAAAGTACCGTAGCAG+CGG - chr4_2:48142235-48142254 None:intergenic 45.0%
AGTAAGCGACGACCGTATAA+TGG - chr4_2:48142575-48142594 None:intergenic 45.0%
GGTGGACGCTAAATTTGATC+TGG + chr4_2:48142646-48142665 Msa0603570:CDS 45.0%
CTGAAGTGAAGAAACCTGAG+AGG + chr4_2:48142744-48142763 Msa0603570:CDS 45.0%
GGGGAAAAATTTCACCTCTC+AGG - chr4_2:48142761-48142780 None:intergenic 45.0%
! ACTTTAGCCCTTTTCGCAGT+TGG - chr4_2:48142885-48142904 None:intergenic 45.0%
ACTGCGAAAAGGGCTAAAGT+TGG + chr4_2:48142885-48142904 Msa0603570:CDS 45.0%
CTGCGAAAAGGGCTAAAGTT+GGG + chr4_2:48142886-48142905 Msa0603570:CDS 45.0%
TCCATGGCCTTCGTATATTC+TGG - chr4_2:48143244-48143263 None:intergenic 45.0%
AGCAGCAGCATACAATTCCA+TGG - chr4_2:48143260-48143279 None:intergenic 45.0%
!! GAAGTGGATGGCTTTGATTG+AGG + chr4_2:48143428-48143447 Msa0603570:CDS 45.0%
GGATCAGGAGGGATATGATA+AGG + chr4_2:48143698-48143717 Msa0603570:intron 45.0%
GGAAGGCCAATCTGATGATA+AGG + chr4_2:48143728-48143747 Msa0603570:CDS 45.0%
GGGCTTCCTTATCATCAGAT+TGG - chr4_2:48143737-48143756 None:intergenic 45.0%
GGTGGAAGAGTTAACAGATG+AGG + chr4_2:48143770-48143789 Msa0603570:CDS 45.0%
! GAGGAGTAGTGGTAGCATTT+TGG + chr4_2:48143789-48143808 Msa0603570:exon 45.0%
GGCAAGTTTAACATGATCGC+AGG - chr4_2:48144003-48144022 None:intergenic 45.0%
! GTGTGCGGGTTGCTCATATT+TGG - chr4_2:48142020-48142039 None:intergenic 50.0%
TTACCCGAAGATGTGTGTGC+GGG - chr4_2:48142034-48142053 None:intergenic 50.0%
CAGAATTTGCACCGCTGCTA+CGG + chr4_2:48142221-48142240 Msa0603570:five_prime_UTR 50.0%
AGAGCTTCGCGCAGCTAAAT+TGG + chr4_2:48142679-48142698 Msa0603570:CDS 50.0%
AGGAAGCTACTGGTGAGAAG+CGG + chr4_2:48143056-48143075 Msa0603570:intron 50.0%
ACGCAGGCCAGAATATACGA+AGG + chr4_2:48143234-48143253 Msa0603570:CDS 50.0%
GCCAGAATATACGAAGGCCA+TGG + chr4_2:48143240-48143259 Msa0603570:CDS 50.0%
GTTAGGAAGCTGCTGTGAAG+TGG + chr4_2:48143412-48143431 Msa0603570:intron 50.0%
GTTAACTCTTCCACCTCTCC+TGG - chr4_2:48143765-48143784 None:intergenic 50.0%
! GTGTGCGGGTTGCTCATATT+TGG - chr4_2:48142020-48142039 None:intergenic 50.0%
TTACCCGAAGATGTGTGTGC+GGG - chr4_2:48142034-48142053 None:intergenic 50.0%
CAGAATTTGCACCGCTGCTA+CGG + chr4_2:48142221-48142240 Msa0603570:five_prime_UTR 50.0%
AGAGCTTCGCGCAGCTAAAT+TGG + chr4_2:48142679-48142698 Msa0603570:CDS 50.0%
AGGAAGCTACTGGTGAGAAG+CGG + chr4_2:48143056-48143075 Msa0603570:intron 50.0%
ACGCAGGCCAGAATATACGA+AGG + chr4_2:48143234-48143253 Msa0603570:CDS 50.0%
GCCAGAATATACGAAGGCCA+TGG + chr4_2:48143240-48143259 Msa0603570:CDS 50.0%
GTTAGGAAGCTGCTGTGAAG+TGG + chr4_2:48143412-48143431 Msa0603570:intron 50.0%
GTTAACTCTTCCACCTCTCC+TGG - chr4_2:48143765-48143784 None:intergenic 50.0%
GCAACCCGCACACACATCTT+CGG + chr4_2:48142027-48142046 Msa0603570:five_prime_UTR 55.0%
CAACCCGCACACACATCTTC+GGG + chr4_2:48142028-48142047 Msa0603570:five_prime_UTR 55.0%
CGTAGCAGCGGTGCAAATTC+TGG - chr4_2:48142223-48142242 None:intergenic 55.0%
CAACTCGAAGTCCATGGTGG+CGG - chr4_2:48142540-48142559 None:intergenic 55.0%
CTTCGGCAACTCGAAGTCCA+TGG - chr4_2:48142546-48142565 None:intergenic 55.0%
!! CATGGACTTCGAGTTGCCGA+AGG + chr4_2:48142544-48142563 Msa0603570:exon 55.0%
!! TTTTTCGGACGAGGCACGCT+TGG + chr4_2:48142601-48142620 Msa0603570:CDS 55.0%
AAGCTACTGGTGAGAAGCGG+AGG + chr4_2:48143059-48143078 Msa0603570:CDS 55.0%
GAAGCGGAGGTCTTTGACTG+AGG + chr4_2:48143072-48143091 Msa0603570:CDS 55.0%
GGAAGCTGCTGTGAAGTGGA+TGG + chr4_2:48143416-48143435 Msa0603570:intron 55.0%
GCAACCCGCACACACATCTT+CGG + chr4_2:48142027-48142046 Msa0603570:five_prime_UTR 55.0%
CAACCCGCACACACATCTTC+GGG + chr4_2:48142028-48142047 Msa0603570:five_prime_UTR 55.0%
CGTAGCAGCGGTGCAAATTC+TGG - chr4_2:48142223-48142242 None:intergenic 55.0%
CAACTCGAAGTCCATGGTGG+CGG - chr4_2:48142540-48142559 None:intergenic 55.0%
CTTCGGCAACTCGAAGTCCA+TGG - chr4_2:48142546-48142565 None:intergenic 55.0%
!! CATGGACTTCGAGTTGCCGA+AGG + chr4_2:48142544-48142563 Msa0603570:exon 55.0%
!! TTTTTCGGACGAGGCACGCT+TGG + chr4_2:48142601-48142620 Msa0603570:CDS 55.0%
AAGCTACTGGTGAGAAGCGG+AGG + chr4_2:48143059-48143078 Msa0603570:CDS 55.0%
GAAGCGGAGGTCTTTGACTG+AGG + chr4_2:48143072-48143091 Msa0603570:CDS 55.0%
GGAAGCTGCTGTGAAGTGGA+TGG + chr4_2:48143416-48143435 Msa0603570:intron 55.0%
AGAAACCCTTGCCGCCACCA+TGG + chr4_2:48142526-48142545 Msa0603570:intron 60.0%
!! GAAGTCCATGGTGGCGGCAA+GGG - chr4_2:48142534-48142553 None:intergenic 60.0%
CGGCAACTCGAAGTCCATGG+TGG - chr4_2:48142543-48142562 None:intergenic 60.0%
GATAAGGAAGCCCCTGCACC+AGG + chr4_2:48143744-48143763 Msa0603570:CDS 60.0%
TTCCACCTCTCCTGGTGCAG+GGG - chr4_2:48143757-48143776 None:intergenic 60.0%
CTTCCACCTCTCCTGGTGCA+GGG - chr4_2:48143758-48143777 None:intergenic 60.0%
TCTTCCACCTCTCCTGGTGC+AGG - chr4_2:48143759-48143778 None:intergenic 60.0%
AGAAACCCTTGCCGCCACCA+TGG + chr4_2:48142526-48142545 Msa0603570:intron 60.0%
!! GAAGTCCATGGTGGCGGCAA+GGG - chr4_2:48142534-48142553 None:intergenic 60.0%
CGGCAACTCGAAGTCCATGG+TGG - chr4_2:48142543-48142562 None:intergenic 60.0%
GATAAGGAAGCCCCTGCACC+AGG + chr4_2:48143744-48143763 Msa0603570:CDS 60.0%
TTCCACCTCTCCTGGTGCAG+GGG - chr4_2:48143757-48143776 None:intergenic 60.0%
CTTCCACCTCTCCTGGTGCA+GGG - chr4_2:48143758-48143777 None:intergenic 60.0%
TCTTCCACCTCTCCTGGTGC+AGG - chr4_2:48143759-48143778 None:intergenic 60.0%
!! CGAAGTCCATGGTGGCGGCA+AGG - chr4_2:48142535-48142554 None:intergenic 65.0%
!! CGAAGTCCATGGTGGCGGCA+AGG - chr4_2:48142535-48142554 None:intergenic 65.0%
GGAAGCCCCTGCACCAGGAG+AGG + chr4_2:48143749-48143768 Msa0603570:CDS 70.0%
AGCCCCTGCACCAGGAGAGG+TGG + chr4_2:48143752-48143771 Msa0603570:CDS 70.0%
GGAAGCCCCTGCACCAGGAG+AGG + chr4_2:48143749-48143768 Msa0603570:CDS 70.0%
AGCCCCTGCACCAGGAGAGG+TGG + chr4_2:48143752-48143771 Msa0603570:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 48141933 48144148 48141933 ID=Msa0603570;Name=Msa0603570
chr4_2 mRNA 48141933 48144148 48141933 ID=Msa0603570-mRNA-1;Parent=Msa0603570;Name=Msa0603570-mRNA-1;_AED=0.12;_eAED=0.12;_QI=272|1|1|1|0.75|0.66|9|351|211
chr4_2 exon 48141933 48142131 48141933 ID=Msa0603570-mRNA-1:exon:11070;Parent=Msa0603570-mRNA-1
chr4_2 exon 48142187 48142242 48142187 ID=Msa0603570-mRNA-1:exon:11071;Parent=Msa0603570-mRNA-1
chr4_2 exon 48142528 48142765 48142528 ID=Msa0603570-mRNA-1:exon:11072;Parent=Msa0603570-mRNA-1
chr4_2 exon 48142860 48142947 48142860 ID=Msa0603570-mRNA-1:exon:11073;Parent=Msa0603570-mRNA-1
chr4_2 exon 48143058 48143096 48143058 ID=Msa0603570-mRNA-1:exon:11074;Parent=Msa0603570-mRNA-1
chr4_2 exon 48143202 48143306 48143202 ID=Msa0603570-mRNA-1:exon:11075;Parent=Msa0603570-mRNA-1
chr4_2 exon 48143417 48143452 48143417 ID=Msa0603570-mRNA-1:exon:11076;Parent=Msa0603570-mRNA-1
chr4_2 exon 48143558 48143605 48143558 ID=Msa0603570-mRNA-1:exon:11077;Parent=Msa0603570-mRNA-1
chr4_2 exon 48143699 48144148 48143699 ID=Msa0603570-mRNA-1:exon:11078;Parent=Msa0603570-mRNA-1
chr4_2 five_prime_UTR 48141933 48142131 48141933 ID=Msa0603570-mRNA-1:five_prime_utr;Parent=Msa0603570-mRNA-1
chr4_2 five_prime_UTR 48142187 48142242 48142187 ID=Msa0603570-mRNA-1:five_prime_utr;Parent=Msa0603570-mRNA-1
chr4_2 five_prime_UTR 48142528 48142544 48142528 ID=Msa0603570-mRNA-1:five_prime_utr;Parent=Msa0603570-mRNA-1
chr4_2 CDS 48142545 48142765 48142545 ID=Msa0603570-mRNA-1:cds;Parent=Msa0603570-mRNA-1
chr4_2 CDS 48142860 48142947 48142860 ID=Msa0603570-mRNA-1:cds;Parent=Msa0603570-mRNA-1
chr4_2 CDS 48143058 48143096 48143058 ID=Msa0603570-mRNA-1:cds;Parent=Msa0603570-mRNA-1
chr4_2 CDS 48143202 48143306 48143202 ID=Msa0603570-mRNA-1:cds;Parent=Msa0603570-mRNA-1
chr4_2 CDS 48143417 48143452 48143417 ID=Msa0603570-mRNA-1:cds;Parent=Msa0603570-mRNA-1
chr4_2 CDS 48143558 48143605 48143558 ID=Msa0603570-mRNA-1:cds;Parent=Msa0603570-mRNA-1
chr4_2 CDS 48143699 48143797 48143699 ID=Msa0603570-mRNA-1:cds;Parent=Msa0603570-mRNA-1
chr4_2 three_prime_UTR 48143798 48144148 48143798 ID=Msa0603570-mRNA-1:three_prime_utr;Parent=Msa0603570-mRNA-1
Gene Sequence

>Msa0603570

ATGGACTTCGAGTTGCCGAAGGATCATCCATTATACGGTCGTCGCTTACTAAAGCTTTTTTCGGACGAGGCACGCTTGGAGTTATATAAGTGCGAAGATATGGTGGACGCTAAATTTGATCTGGCTCTTTTTGAAGAGCTTCGCGCAGCTAAATTGGAAAAAGATGAACAAAATCTTTGTTTAGATTCTGAGCAAGCTTCTGAAGTGAAGAAACCTGAGAGGAAGAAACCAAATTCAAAAGAACCAACTGCGAAAAGGGCTAAAGTTGGGAAAGGGAAAAATGTTAATGAATCTAATGCTGAAAATGAAGAAGCTACTGGTGAGAAGCGGAGGTCTTTGACTGAGGAAGCGAAGTATCATTCTTTGGTTAGAGTTTTTGAACGCAGGCCAGAATATACGAAGGCCATGGAATTGTATGCTGCTGCTGCTGCTGCTTCTGCTGCTGCTGCTAAAGAAGCTGCTGTGAAGTGGATGGCTTTGATTGAGGAAGAGAAGAAGGCCATGCATTTGTATAATGCTGCCACTGCTGAAAATGAAGATCAGGAGGGATATGATAAGGAAGATAAGGAAGGCCAATCTGATGATAAGGAAGCCCCTGCACCAGGAGAGGTGGAAGAGTTAACAGATGAGGAGTAG

Protein sequence

>Msa0603570

MDFELPKDHPLYGRRLLKLFSDEARLELYKCEDMVDAKFDLALFEELRAAKLEKDEQNLCLDSEQASEVKKPERKKPNSKEPTAKRAKVGKGKNVNESNAENEEATGEKRRSLTEEAKYHSLVRVFERRPEYTKAMELYAAAAAASAAAAKEAAVKWMALIEEEKKAMHLYNAATAENEDQEGYDKEDKEGQSDDKEAPAPGEVEELTDEE*