AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165780 MtrunA17_Chr7g0269271 99.074 108 1 0 1 108 1 108 3.96e-76 229
Msa1165780 MtrunA17_Chr1g0195701 56.757 222 51 6 1 216 1 183 1.47e-72 218
Msa1165780 MtrunA17_Chr6g0465301 51.724 116 56 0 1 116 1 116 2.83e-38 131
Msa1165780 MtrunA17_Chr6g0460991 48.624 109 55 1 1 109 1 108 3.89e-33 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165780 AT4G02450.2 62.832 113 41 1 1 113 1 112 2.19e-48 159
Msa1165780 AT4G02450.1 62.832 113 41 1 1 113 1 112 2.25e-48 159
Msa1165780 AT3G03773.1 43.836 146 77 3 1 143 1 144 5.42e-35 121
Msa1165780 AT3G03773.3 52.212 113 52 2 1 113 1 111 6.41e-35 120
Msa1165780 AT3G03773.2 46.565 131 65 3 1 128 55 183 2.53e-33 119

Find 99 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATAGATTGGGATAAA+TGG 0.128154 7_4:-57772501 Msa1165780:CDS
TGGAAATTGTCACAATATTT+AGG 0.144003 7_4:+57770672 None:intergenic
CAAAATACTTGAATCATTAA+AGG 0.220029 7_4:-57770629 Msa1165780:three_prime_UTR
CACTAACCAAAGAAGGAATT+AGG 0.235168 7_4:-57773580 Msa1165780:five_prime_UTR
TAAAACCCTAATTCCTTCTT+TGG 0.259582 7_4:+57773574 None:intergenic
ATGGGAGGCATGGGCGGCTT+GGG 0.312741 7_4:-57771939 Msa1165780:CDS
CCAGCAGCATCTTGCTCTCC+AGG 0.348935 7_4:+57771016 None:intergenic
GGGCGGCTTGGGAGGAATGA+TGG 0.360240 7_4:-57771928 Msa1165780:CDS
CTCATTATGTGAAAATAGAT+TGG 0.366482 7_4:-57772510 Msa1165780:CDS
ACTAACCAAAGAAGGAATTA+GGG 0.393297 7_4:-57773579 Msa1165780:five_prime_UTR
GAAAAGGTAAAATCACCTTC+TGG 0.394930 7_4:+57772888 None:intergenic
GGCGGCTTGGGAGGAATGAT+GGG 0.395763 7_4:-57771927 Msa1165780:CDS
GAGATTGTACCTCATGTTGT+TGG 0.400473 7_4:+57773515 None:intergenic
TGTGTACTGCAGAAATTTGC+TGG 0.400858 7_4:-57771770 Msa1165780:intron
GAAAATAGATTGGGATAAAT+GGG 0.403064 7_4:-57772500 Msa1165780:CDS
GGAGGCATGGGCGGCTTGGG+AGG 0.412828 7_4:-57771936 Msa1165780:CDS
TTCTGGAGTAAGATCAACTT+TGG 0.412841 7_4:+57772905 None:intergenic
GATGCTGCTGGCAAGAGCGC+TGG 0.414372 7_4:-57771004 Msa1165780:CDS
AATGGGAGGCATGGGCGGCT+TGG 0.421152 7_4:-57771940 Msa1165780:CDS
GGAGGAATGGGAGGCATGGG+CGG 0.422053 7_4:-57771945 Msa1165780:CDS
TGCAAGGTTATTATGTGCTC+GGG 0.426606 7_4:+57770948 None:intergenic
AGATTTATTTAATGCATGAA+TGG 0.431115 7_4:-57770788 Msa1165780:three_prime_UTR
CTGCAAGGTTATTATGTGCT+CGG 0.431755 7_4:+57770947 None:intergenic
AATGGGAGGCATGGGAGGAA+TGG 0.435114 7_4:-57771892 Msa1165780:CDS
GCGGCTTGGGAGGAATGATG+GGG 0.439489 7_4:-57771926 Msa1165780:CDS
GGAGGAATGGGAGGCATGGG+AGG 0.441962 7_4:-57771897 Msa1165780:CDS
CTGCAGAAATTCGGCGGGAT+GGG 0.442879 7_4:-57771984 Msa1165780:intron
GATGATCCAATGGGAGGAAT+GGG 0.449196 7_4:-57771957 Msa1165780:CDS
CGGCTTGGGAGGAATGATGG+GGG 0.450615 7_4:-57771925 Msa1165780:CDS
TTTCTGTCACTAACCAAAGA+AGG 0.451360 7_4:-57773587 Msa1165780:five_prime_UTR
ATGCCTCCCATTCCTCCCAT+TGG 0.456440 7_4:+57771951 None:intergenic
ATGGGAGGAATGGGAGGCAT+GGG 0.458260 7_4:-57771900 Msa1165780:CDS
CATGGGAGGAATGGGAGGCA+TGG 0.459907 7_4:-57771901 Msa1165780:CDS
CTAAACTCATCGCATTGAAC+GGG 0.460491 7_4:-57770575 Msa1165780:three_prime_UTR
ATGGGAGGAATGGGAGGCAT+GGG 0.470038 7_4:-57771948 Msa1165780:CDS
GTCGTCATCCCGAGGTTAAG+TGG 0.476828 7_4:-57772983 Msa1165780:CDS
AATGGAAGGACTGGGAGGAA+TGG 0.482020 7_4:-57771874 Msa1165780:CDS
TGTGTACTACTGCAGAAATT+CGG 0.482929 7_4:-57771993 Msa1165780:intron
CATGGGAGGAATGGAAGGAC+TGG 0.485477 7_4:-57771883 Msa1165780:CDS
TCATTATGTGAAAATAGATT+GGG 0.486084 7_4:-57772509 Msa1165780:CDS
AGCACCAGCACTACCAGAAA+AGG 0.488899 7_4:+57772872 None:intergenic
CTCTGTGCCCACTTAACCTC+GGG 0.490812 7_4:+57772975 None:intergenic
CCTGGAGAGCAAGATGCTGC+TGG 0.496634 7_4:-57771016 Msa1165780:CDS
CTGAGAGTGGATGGTGGAAG+AGG 0.498153 7_4:-57772558 Msa1165780:CDS
AATGGGAGGAATGGGAGGCA+TGG 0.503653 7_4:-57771949 Msa1165780:CDS
TTCCTCTTTGTGCCATTCAG+TGG 0.505023 7_4:-57770882 Msa1165780:three_prime_UTR
GATCAAGAAGTGTCAAAGCC+TGG 0.508961 7_4:-57771034 Msa1165780:CDS
TGATGATCCAATGGGAGGAA+TGG 0.517095 7_4:-57771958 Msa1165780:CDS
GGAGGCATGGGAGGAATGGA+AGG 0.525417 7_4:-57771888 Msa1165780:CDS
AAGAGGTTGCTGCGTGGAGA+AGG 0.527175 7_4:-57772541 Msa1165780:CDS
ACTGCAGAAATTCGGCGGGA+TGG 0.533257 7_4:-57771985 Msa1165780:intron
GGCTTGGGAGGAATGATGGG+GGG 0.535535 7_4:-57771924 Msa1165780:CDS
TGGGATGGGTGGTGATGCAA+TGG 0.535642 7_4:-57771750 Msa1165780:CDS
TGCTGGCAAGAGCGCTGGTG+AGG 0.538363 7_4:-57770999 Msa1165780:CDS
CATATTCTGTGTAGTGCAGA+AGG 0.542490 7_4:-57772581 Msa1165780:CDS
ACTAAACTCATCGCATTGAA+CGG 0.543164 7_4:-57770576 Msa1165780:three_prime_UTR
ACTGCAGAAATTTGCTGGGA+TGG 0.543444 7_4:-57771765 Msa1165780:intron
GGTCTACATCACAGTGCAGT+TGG 0.544236 7_4:-57772943 Msa1165780:CDS
CTTAAAACTACACCACTGAA+TGG 0.547014 7_4:+57770870 None:intergenic
AAAGTTGATCTTACTCCAGA+AGG 0.549028 7_4:-57772903 Msa1165780:CDS
GATGGGTGGTGATGATCCAA+TGG 0.551280 7_4:-57771967 Msa1165780:CDS
CAGAAATTCGGCGGGATGGG+TGG 0.555897 7_4:-57771981 Msa1165780:CDS
TACTACTGCAGAAATTCGGC+GGG 0.556423 7_4:-57771989 Msa1165780:intron
TGCTGTGTTGACTTAACAGT+AGG 0.559983 7_4:-57770825 Msa1165780:three_prime_UTR
GATGAAGATGAGGCTGAAGA+AGG 0.560115 7_4:-57772475 Msa1165780:intron
CTGCAGAAATTTGCTGGGAT+GGG 0.566994 7_4:-57771764 Msa1165780:intron
GTTGCTGCGTGGAGAAGGCA+AGG 0.570508 7_4:-57772536 Msa1165780:CDS
TCTAGCCAGCGCTGTCTCGA+TGG 0.574127 7_4:-57770753 Msa1165780:three_prime_UTR
TCTTCAAATCTTGCACTGCA+AGG 0.577046 7_4:+57770932 None:intergenic
GTCTCGATGGAAAAGAATGT+TGG 0.578060 7_4:-57770740 Msa1165780:three_prime_UTR
CTTTGACAAGGTTAATGTAG+AGG 0.578313 7_4:-57772817 Msa1165780:intron
ACTACTGTGATTAAACCTTG+TGG 0.578622 7_4:+57770652 None:intergenic
CAGGAGAGCAAAATCAGTGT+AGG 0.585626 7_4:-57772613 Msa1165780:CDS
ATGGGAGGAATGGAAGGACT+GGG 0.592383 7_4:-57771882 Msa1165780:CDS
TGCAGAAGGCTGAGAGTGGA+TGG 0.594343 7_4:-57772567 Msa1165780:CDS
TCTCTGTGCCCACTTAACCT+CGG 0.594623 7_4:+57772974 None:intergenic
GATCCAATGGGAGGAATGGG+AGG 0.596994 7_4:-57771954 Msa1165780:CDS
CAGAAATTTGCTGGGATGGG+TGG 0.597276 7_4:-57771761 Msa1165780:CDS
TTTATTTAATGCATGAATGG+CGG 0.605112 7_4:-57770785 Msa1165780:three_prime_UTR
TCGTCATCCCGAGGTTAAGT+GGG 0.605727 7_4:-57772982 Msa1165780:CDS
ATTGACGAGAGTGACGATGA+AGG 0.607086 7_4:-57771722 Msa1165780:intron
ATGGGTGGTGATGATCCAAT+GGG 0.611795 7_4:-57771966 Msa1165780:CDS
GTGTACTGCAGAAATTTGCT+GGG 0.618065 7_4:-57771769 Msa1165780:intron
CAATCAAATCCAACAACATG+AGG 0.619501 7_4:-57773524 Msa1165780:intron
GTGGGCACAGAGAGTAGACA+AGG 0.620515 7_4:-57772964 Msa1165780:CDS
GTTAAGTCAACACAGCAAAG+AGG 0.628057 7_4:+57770831 None:intergenic
GAAACTTGAGCTCTTTGACA+AGG 0.629398 7_4:-57772829 Msa1165780:CDS
GGAGGAATGGAAGGACTGGG+AGG 0.646274 7_4:-57771879 Msa1165780:CDS
ATGATGCAGTCGTCATCCCG+AGG 0.646727 7_4:-57772991 Msa1165780:intron
CACCACTGAATGGCACAAAG+AGG 0.647026 7_4:+57770880 None:intergenic
TAAATGGGTCGATGAAGATG+AGG 0.649358 7_4:-57772485 Msa1165780:CDS
GTACTACTGCAGAAATTCGG+CGG 0.650088 7_4:-57771990 Msa1165780:intron
GTAGTGCAGAAGGCTGAGAG+TGG 0.686588 7_4:-57772571 Msa1165780:CDS
GGTGGTGATGATCCAATGGG+AGG 0.688264 7_4:-57771963 Msa1165780:CDS
ATATTGTGACAATTTCCACA+AGG 0.689071 7_4:-57770667 Msa1165780:three_prime_UTR
GCAAGGTTATTATGTGCTCG+GGG 0.703220 7_4:+57770949 None:intergenic
ACACAGCAAAGAGGACACAA+AGG 0.705271 7_4:+57770840 None:intergenic
AGAAGGCTGAGAGTGGATGG+TGG 0.722955 7_4:-57772564 Msa1165780:CDS
TGGTGGAAGAGGTTGCTGCG+TGG 0.748724 7_4:-57772547 Msa1165780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTGATATTAATTTTT+AGG - chr7_4:57771873-57771892 Msa1165780:CDS 10.0%
!! TATCCATTAAAAAAATTCAA+AGG + chr7_4:57771717-57771736 None:intergenic 15.0%
!!! TTTGAATTTTTTTAATGGAT+AGG - chr7_4:57771716-57771735 Msa1165780:intron 15.0%
!! AGATTATTAATTTCAATTTG+AGG - chr7_4:57772845-57772864 Msa1165780:CDS 15.0%
!! GATTATTAATTTCAATTTGA+GGG - chr7_4:57772846-57772865 Msa1165780:CDS 15.0%
!!! ACTTATCTTTTCAATTGATT+TGG - chr7_4:57770786-57770805 Msa1165780:three_prime_UTR 20.0%
!! AAACTATGAAACAAAATGTT+AGG - chr7_4:57770908-57770927 Msa1165780:three_prime_UTR 20.0%
!! AACTATGAAACAAAATGTTA+GGG - chr7_4:57770909-57770928 Msa1165780:three_prime_UTR 20.0%
!!! TTATTAGAGCTGTTTTAAAA+TGG - chr7_4:57771091-57771110 Msa1165780:intron 20.0%
!!! GTTTTGATTTATATGCTTAT+CGG - chr7_4:57771122-57771141 Msa1165780:intron 20.0%
!! TCATTATGTGAAAATAGATT+GGG - chr7_4:57771643-57771662 Msa1165780:intron 20.0%
!!! TGTCCTTTGAATTTTTTTAA+TGG - chr7_4:57771711-57771730 Msa1165780:intron 20.0%
!!! GGACAACAATATATTTTTAT+TGG - chr7_4:57771737-57771756 Msa1165780:CDS 20.0%
!! TAAGAAAAAGGAAATTAAAG+GGG + chr7_4:57772955-57772974 None:intergenic 20.0%
!! CTAAGAAAAAGGAAATTAAA+GGG + chr7_4:57772956-57772975 None:intergenic 20.0%
!! ACTAAGAAAAAGGAAATTAA+AGG + chr7_4:57772957-57772976 None:intergenic 20.0%
!! AGATTTATTTAATGCATGAA+TGG - chr7_4:57773364-57773383 Msa1165780:intron 20.0%
!! CAAAATACTTGAATCATTAA+AGG - chr7_4:57773523-57773542 Msa1165780:intron 20.0%
! ACTATGAAACAAAATGTTAG+GGG - chr7_4:57770910-57770929 Msa1165780:three_prime_UTR 25.0%
! CTTTCTTGTATATGACTATT+TGG - chr7_4:57771037-57771056 Msa1165780:intron 25.0%
!!! AAGATCAACTTTGGAATTTT+TGG + chr7_4:57771241-57771260 None:intergenic 25.0%
!! CAATCTATTTTCACATAATG+AGG + chr7_4:57771644-57771663 None:intergenic 25.0%
! CTCATTATGTGAAAATAGAT+TGG - chr7_4:57771642-57771661 Msa1165780:intron 25.0%
! TGAAAATAGATTGGGATAAA+TGG - chr7_4:57771651-57771670 Msa1165780:intron 25.0%
! GAAAATAGATTGGGATAAAT+GGG - chr7_4:57771652-57771671 Msa1165780:intron 25.0%
! ATCAACAAAATGATACAACT+GGG + chr7_4:57771863-57771882 None:intergenic 25.0%
! TATCAACAAAATGATACAAC+TGG + chr7_4:57771864-57771883 None:intergenic 25.0%
! AGAAATATTGTAGTGAGAAA+TGG + chr7_4:57772019-57772038 None:intergenic 25.0%
!!! CATGATACTTAGATTTTTTG+TGG - chr7_4:57772530-57772549 Msa1165780:CDS 25.0%
!!! GACAATGTAGCTTTAAATAT+TGG - chr7_4:57772627-57772646 Msa1165780:intron 25.0%
! AAGAAAAAGGAAATTAAAGG+GGG + chr7_4:57772954-57772973 None:intergenic 25.0%
! ACACTTCTTGATCTATAATT+GGG + chr7_4:57773111-57773130 None:intergenic 25.0%
! TTTATTTAATGCATGAATGG+CGG - chr7_4:57773367-57773386 Msa1165780:intron 25.0%
! TGGAAATTGTCACAATATTT+AGG + chr7_4:57773483-57773502 None:intergenic 25.0%
ACTAACCAAAGAAGGAATTA+GGG - chr7_4:57770573-57770592 Msa1165780:three_prime_UTR 30.0%
TAAAACCCTAATTCCTTCTT+TGG + chr7_4:57770581-57770600 None:intergenic 30.0%
! AAGAAGGAATTAGGGTTTTA+CGG - chr7_4:57770581-57770600 Msa1165780:three_prime_UTR 30.0%
GATTGAAGATGAGAAAAAAG+AGG + chr7_4:57770613-57770632 None:intergenic 30.0%
AACAAGTCGTCAAATTCAAA+GGG + chr7_4:57770835-57770854 None:intergenic 30.0%
AAACAAGTCGTCAAATTCAA+AGG + chr7_4:57770836-57770855 None:intergenic 30.0%
ATAACTAAATCATGCCTCTA+TGG - chr7_4:57770946-57770965 Msa1165780:exon 30.0%
!!! CTGTTTTAAAATGGATGTGT+TGG - chr7_4:57771100-57771119 Msa1165780:intron 30.0%
CTATGTCCTAAAATGAAAGA+TGG - chr7_4:57771363-57771382 Msa1165780:intron 30.0%
! TAAGGACCATCTTTCATTTT+AGG + chr7_4:57771372-57771391 None:intergenic 30.0%
CATTCAGGTAAACATTCATA+AGG + chr7_4:57771390-57771409 None:intergenic 30.0%
! TTACCTGAATGAGTTGAATA+AGG - chr7_4:57771399-57771418 Msa1165780:intron 30.0%
!!! AAGCATTTTTAGAATGGTTG+TGG - chr7_4:57771460-57771479 Msa1165780:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG - chr7_4:57771936-57771955 Msa1165780:CDS 30.0%
!! CTATTTCTAACCTCTTCAAT+TGG - chr7_4:57772037-57772056 Msa1165780:intron 30.0%
CAACGTAAAACATCAATAGA+AGG + chr7_4:57772132-57772151 None:intergenic 30.0%
! ATATGCTTTTATGTAGAAGC+AGG - chr7_4:57772573-57772592 Msa1165780:CDS 30.0%
TAAAGTTCGTTGTTAACATG+AGG - chr7_4:57772656-57772675 Msa1165780:intron 30.0%
AAAGTTCGTTGTTAACATGA+GGG - chr7_4:57772657-57772676 Msa1165780:intron 30.0%
ATGTCAAGCAACTAAGAAAA+AGG + chr7_4:57772967-57772986 None:intergenic 30.0%
! TTTTTCTTAGTTGCTTGACA+TGG - chr7_4:57772966-57772985 Msa1165780:CDS 30.0%
! TGAGCATCTAGTTCAAAAAA+GGG + chr7_4:57773027-57773046 None:intergenic 30.0%
! ATGAGCATCTAGTTCAAAAA+AGG + chr7_4:57773028-57773047 None:intergenic 30.0%
TGATCTATAATTGGGAAACA+CGG + chr7_4:57773103-57773122 None:intergenic 30.0%
GACACTTCTTGATCTATAAT+TGG + chr7_4:57773112-57773131 None:intergenic 30.0%
ATATTGTGACAATTTCCACA+AGG - chr7_4:57773485-57773504 Msa1165780:intron 30.0%
TTTCTGTCACTAACCAAAGA+AGG - chr7_4:57770565-57770584 Msa1165780:three_prime_UTR 35.0%
CACTAACCAAAGAAGGAATT+AGG - chr7_4:57770572-57770591 Msa1165780:three_prime_UTR 35.0%
GAAGATGAGAAAAAAGAGGT+AGG + chr7_4:57770609-57770628 None:intergenic 35.0%
CAATCAAATCCAACAACATG+AGG - chr7_4:57770628-57770647 Msa1165780:three_prime_UTR 35.0%
CTTATGTGATGAAATCGGAA+GGG + chr7_4:57770720-57770739 None:intergenic 35.0%
CCAAGCTTATGTGATGAAAT+CGG + chr7_4:57770725-57770744 None:intergenic 35.0%
TCAAAGGGTGAGTAACAAAT+CGG + chr7_4:57770820-57770839 None:intergenic 35.0%
!! ACAAAATGTTAGGGGTATCT+TGG - chr7_4:57770918-57770937 Msa1165780:three_prime_UTR 35.0%
ATCTGCATCAATTACCATAG+AGG + chr7_4:57770963-57770982 None:intergenic 35.0%
GTAATTGATGCAGATTGTGA+TGG - chr7_4:57770968-57770987 Msa1165780:CDS 35.0%
!! TTCTGGAGTAAGATCAACTT+TGG + chr7_4:57771250-57771269 None:intergenic 35.0%
! AAAGTTGATCTTACTCCAGA+AGG - chr7_4:57771249-57771268 Msa1165780:intron 35.0%
GAAAAGGTAAAATCACCTTC+TGG + chr7_4:57771267-57771286 None:intergenic 35.0%
! GAAGGTGATTTTACCTTTTC+TGG - chr7_4:57771267-57771286 Msa1165780:intron 35.0%
CTTTGACAAGGTTAATGTAG+AGG - chr7_4:57771335-57771354 Msa1165780:intron 35.0%
AGTCCTTATTCAACTCATTC+AGG + chr7_4:57771405-57771424 None:intergenic 35.0%
ATGCTTTGCTTGCAAAGATA+TGG - chr7_4:57771485-57771504 Msa1165780:intron 35.0%
GAAATCTGATCGAATTGTCT+CGG - chr7_4:57771759-57771778 Msa1165780:CDS 35.0%
TTCCTTAACAAGTGCCTTAA+GGG + chr7_4:57771924-57771943 None:intergenic 35.0%
TTTCCTTAACAAGTGCCTTA+AGG + chr7_4:57771925-57771944 None:intergenic 35.0%
TTTCTAACCTCTTCAATTGG+TGG - chr7_4:57772040-57772059 Msa1165780:intron 35.0%
TTCTAACCTCTTCAATTGGT+GGG - chr7_4:57772041-57772060 Msa1165780:intron 35.0%
GTAAAATTCCATCTGTCCAA+TGG + chr7_4:57772079-57772098 None:intergenic 35.0%
TGTGTACTACTGCAGAAATT+CGG - chr7_4:57772159-57772178 Msa1165780:intron 35.0%
CTGTTTATGCACATGATACT+TGG - chr7_4:57772492-57772511 Msa1165780:CDS 35.0%
GATCTATAATTGGGAAACAC+GGG + chr7_4:57773102-57773121 None:intergenic 35.0%
CTTAAAACTACACCACTGAA+TGG + chr7_4:57773285-57773304 None:intergenic 35.0%
!!! TTCAGTGGTGTAGTTTTAAG+TGG - chr7_4:57773285-57773304 Msa1165780:intron 35.0%
!!! TCAGTGGTGTAGTTTTAAGT+GGG - chr7_4:57773286-57773305 Msa1165780:intron 35.0%
ACTACTGTGATTAAACCTTG+TGG + chr7_4:57773503-57773522 None:intergenic 35.0%
ACTAAACTCATCGCATTGAA+CGG - chr7_4:57773576-57773595 Msa1165780:five_prime_UTR 35.0%
GAGATTGTACCTCATGTTGT+TGG + chr7_4:57770640-57770659 None:intergenic 40.0%
GCTTATGTGATGAAATCGGA+AGG + chr7_4:57770721-57770740 None:intergenic 40.0%
CCGATTTCATCACATAAGCT+TGG - chr7_4:57770722-57770741 Msa1165780:three_prime_UTR 40.0%
GCAGATTGTGATGGCAAATT+TGG - chr7_4:57770977-57770996 Msa1165780:CDS 40.0%
!! TTTACCTTTTCTGGTAGTGC+TGG - chr7_4:57771276-57771295 Msa1165780:intron 40.0%
GAAACTTGAGCTCTTTGACA+AGG - chr7_4:57771323-57771342 Msa1165780:intron 40.0%
!! GGTCGCAAGCATTTTTAGAA+TGG - chr7_4:57771454-57771473 Msa1165780:intron 40.0%
CTGCAATCAAAGAGTCATGA+AGG + chr7_4:57771522-57771541 None:intergenic 40.0%
CTTCATGACTCTTTGATTGC+AGG - chr7_4:57771520-57771539 Msa1165780:intron 40.0%
CATATTCTGTGTAGTGCAGA+AGG - chr7_4:57771571-57771590 Msa1165780:intron 40.0%
TAAATGGGTCGATGAAGATG+AGG - chr7_4:57771667-57771686 Msa1165780:intron 40.0%
! CGAATTGTCTCGGTTTTTGT+TGG - chr7_4:57771769-57771788 Msa1165780:intron 40.0%
! CAATGCAAGCCTACTACTTT+TGG + chr7_4:57771948-57771967 None:intergenic 40.0%
CAAAAGTAGTAGGCTTGCAT+TGG - chr7_4:57771946-57771965 Msa1165780:CDS 40.0%
TCTAACCTCTTCAATTGGTG+GGG - chr7_4:57772042-57772061 Msa1165780:intron 40.0%
GATATGATCCATTGGACAGA+TGG - chr7_4:57772068-57772087 Msa1165780:intron 40.0%
TGTGTACTGCAGAAATTTGC+TGG - chr7_4:57772382-57772401 Msa1165780:intron 40.0%
! GTGTACTGCAGAAATTTGCT+GGG - chr7_4:57772383-57772402 Msa1165780:intron 40.0%
CGTTGTTAACATGAGGGTTA+AGG - chr7_4:57772663-57772682 Msa1165780:intron 40.0%
!! TCAATTTGAGGGCATTCACT+TGG - chr7_4:57772857-57772876 Msa1165780:CDS 40.0%
!! CAATTTGAGGGCATTCACTT+GGG - chr7_4:57772858-57772877 Msa1165780:CDS 40.0%
GAAAGGGGGTTAAAGAAAAG+AGG - chr7_4:57772880-57772899 Msa1165780:CDS 40.0%
TAGTTGCTTGACATGGCTAT+TGG - chr7_4:57772973-57772992 Msa1165780:CDS 40.0%
AGTTGCTTGACATGGCTATT+GGG - chr7_4:57772974-57772993 Msa1165780:CDS 40.0%
TGCAAGGTTATTATGTGCTC+GGG + chr7_4:57773207-57773226 None:intergenic 40.0%
CTGCAAGGTTATTATGTGCT+CGG + chr7_4:57773208-57773227 None:intergenic 40.0%
TCTTCAAATCTTGCACTGCA+AGG + chr7_4:57773223-57773242 None:intergenic 40.0%
GTTAAGTCAACACAGCAAAG+AGG + chr7_4:57773324-57773343 None:intergenic 40.0%
!! TGCTGTGTTGACTTAACAGT+AGG - chr7_4:57773327-57773346 Msa1165780:intron 40.0%
GTCTCGATGGAAAAGAATGT+TGG - chr7_4:57773412-57773431 Msa1165780:intron 40.0%
CTAAACTCATCGCATTGAAC+GGG - chr7_4:57773577-57773596 Msa1165780:five_prime_UTR 40.0%
! TGATACTAGCCTGCTTATGC+TGG - chr7_4:57771430-57771449 Msa1165780:intron 45.0%
CAGGAGAGCAAAATCAGTGT+AGG - chr7_4:57771539-57771558 Msa1165780:intron 45.0%
GATGAAGATGAGGCTGAAGA+AGG - chr7_4:57771677-57771696 Msa1165780:intron 45.0%
! TGTCTCGGTTTTTGTTGGTC+AGG - chr7_4:57771774-57771793 Msa1165780:intron 45.0%
!! TGATGTTGACTTGGGAGGAA+TGG - chr7_4:57771803-57771822 Msa1165780:intron 45.0%
! CTTGGGAGGAATGGATTTCT+CGG - chr7_4:57771812-57771831 Msa1165780:intron 45.0%
AAATGCCACAAGTGCCCTTA+AGG - chr7_4:57771907-57771926 Msa1165780:CDS 45.0%
! TGCCCTTAAGGCACTTGTTA+AGG - chr7_4:57771919-57771938 Msa1165780:CDS 45.0%
TGGGGTGTGATATGATCCAT+TGG - chr7_4:57772060-57772079 Msa1165780:intron 45.0%
GTACTACTGCAGAAATTCGG+CGG - chr7_4:57772162-57772181 Msa1165780:intron 45.0%
TACTACTGCAGAAATTCGGC+GGG - chr7_4:57772163-57772182 Msa1165780:intron 45.0%
! ATGGGTGGTGATGATCCAAT+GGG - chr7_4:57772186-57772205 Msa1165780:intron 45.0%
TGATGATCCAATGGGAGGAA+TGG - chr7_4:57772194-57772213 Msa1165780:intron 45.0%
GATGATCCAATGGGAGGAAT+GGG - chr7_4:57772195-57772214 Msa1165780:intron 45.0%
!! ACTGCAGAAATTTGCTGGGA+TGG - chr7_4:57772387-57772406 Msa1165780:intron 45.0%
!! CTGCAGAAATTTGCTGGGAT+GGG - chr7_4:57772388-57772407 Msa1165780:intron 45.0%
ATTGACGAGAGTGACGATGA+AGG - chr7_4:57772430-57772449 Msa1165780:intron 45.0%
! AAGGATGTTAGCTCGAGTTG+CGG - chr7_4:57772682-57772701 Msa1165780:intron 45.0%
!! GATCAAGAAGTGTCAAAGCC+TGG - chr7_4:57773118-57773137 Msa1165780:intron 45.0%
GCAAGGTTATTATGTGCTCG+GGG + chr7_4:57773206-57773225 None:intergenic 45.0%
! TTCCTCTTTGTGCCATTCAG+TGG - chr7_4:57773270-57773289 Msa1165780:intron 45.0%
ACACAGCAAAGAGGACACAA+AGG + chr7_4:57773315-57773334 None:intergenic 45.0%
TCGTCATCCCGAGGTTAAGT+GGG - chr7_4:57771170-57771189 Msa1165780:intron 50.0%
TCTCTGTGCCCACTTAACCT+CGG + chr7_4:57771181-57771200 None:intergenic 50.0%
GGTCTACATCACAGTGCAGT+TGG - chr7_4:57771209-57771228 Msa1165780:intron 50.0%
AGCACCAGCACTACCAGAAA+AGG + chr7_4:57771283-57771302 None:intergenic 50.0%
!!! TTTTCTGGTAGTGCTGGTGC+TGG - chr7_4:57771282-57771301 Msa1165780:intron 50.0%
! TACTAGCCTGCTTATGCTGG+TGG - chr7_4:57771433-57771452 Msa1165780:intron 50.0%
! CTCGGTTTTTGTTGGTCAGG+TGG - chr7_4:57771777-57771796 Msa1165780:intron 50.0%
! GGTTTTTGTTGGTCAGGTGG+TGG - chr7_4:57771780-57771799 Msa1165780:intron 50.0%
! AGGTGGTGGTGATGTTGACT+TGG - chr7_4:57771794-57771813 Msa1165780:intron 50.0%
!! GGTGGTGGTGATGTTGACTT+GGG - chr7_4:57771795-57771814 Msa1165780:intron 50.0%
!! AAGTGCCTTAAGGGCACTTG+TGG + chr7_4:57771915-57771934 None:intergenic 50.0%
TCACACCCCACCAATTGAAG+AGG + chr7_4:57772050-57772069 None:intergenic 50.0%
! GATGGGTGGTGATGATCCAA+TGG - chr7_4:57772185-57772204 Msa1165780:intron 50.0%
ATGGGAGGAATGGAAGGACT+GGG - chr7_4:57772270-57772289 Msa1165780:intron 50.0%
AATGGAAGGACTGGGAGGAA+TGG - chr7_4:57772278-57772297 Msa1165780:intron 50.0%
!! CAGAAATTTGCTGGGATGGG+TGG - chr7_4:57772391-57772410 Msa1165780:intron 50.0%
!! TGAGGGCATTCACTTGGGAA+AGG - chr7_4:57772863-57772882 Msa1165780:CDS 50.0%
!! GAGGGCATTCACTTGGGAAA+GGG - chr7_4:57772864-57772883 Msa1165780:CDS 50.0%
! AGGGCATTCACTTGGGAAAG+GGG - chr7_4:57772865-57772884 Msa1165780:CDS 50.0%
CACCACTGAATGGCACAAAG+AGG + chr7_4:57773275-57773294 None:intergenic 50.0%
ATGATGCAGTCGTCATCCCG+AGG - chr7_4:57771161-57771180 Msa1165780:intron 55.0%
GTCGTCATCCCGAGGTTAAG+TGG - chr7_4:57771169-57771188 Msa1165780:intron 55.0%
CTCTGTGCCCACTTAACCTC+GGG + chr7_4:57771180-57771199 None:intergenic 55.0%
GTGGGCACAGAGAGTAGACA+AGG - chr7_4:57771188-57771207 Msa1165780:intron 55.0%
TTGCGACCACCAGCATAAGC+AGG + chr7_4:57771442-57771461 None:intergenic 55.0%
GTAGTGCAGAAGGCTGAGAG+TGG - chr7_4:57771581-57771600 Msa1165780:intron 55.0%
TGCAGAAGGCTGAGAGTGGA+TGG - chr7_4:57771585-57771604 Msa1165780:intron 55.0%
AGAAGGCTGAGAGTGGATGG+TGG - chr7_4:57771588-57771607 Msa1165780:intron 55.0%
!! CTGAGAGTGGATGGTGGAAG+AGG - chr7_4:57771594-57771613 Msa1165780:intron 55.0%
AAGAGGTTGCTGCGTGGAGA+AGG - chr7_4:57771611-57771630 Msa1165780:intron 55.0%
!! GGTGGTGATGTTGACTTGGG+AGG - chr7_4:57771798-57771817 Msa1165780:intron 55.0%
ACTGCAGAAATTCGGCGGGA+TGG - chr7_4:57772167-57772186 Msa1165780:intron 55.0%
CTGCAGAAATTCGGCGGGAT+GGG - chr7_4:57772168-57772187 Msa1165780:intron 55.0%
! GGTGGTGATGATCCAATGGG+AGG - chr7_4:57772189-57772208 Msa1165780:intron 55.0%
GATCCAATGGGAGGAATGGG+AGG - chr7_4:57772198-57772217 Msa1165780:intron 55.0%
ATGCCTCCCATTCCTCCCAT+TGG + chr7_4:57772204-57772223 None:intergenic 55.0%
AATGGGAGGAATGGGAGGCA+TGG - chr7_4:57772203-57772222 Msa1165780:intron 55.0%
! ATGGGAGGAATGGGAGGCAT+GGG - chr7_4:57772204-57772223 Msa1165780:intron 55.0%
! ATGGGAGGAATGGGAGGCAT+GGG - chr7_4:57772204-57772223 Msa1165780:intron 55.0%
! AATGGGAGGCATGGGAGGAA+TGG - chr7_4:57772260-57772279 Msa1165780:intron 55.0%
CATGGGAGGAATGGAAGGAC+TGG - chr7_4:57772269-57772288 Msa1165780:intron 55.0%
! TGGGATGGGTGGTGATGCAA+TGG - chr7_4:57772402-57772421 Msa1165780:intron 55.0%
! GTTAGCTCGAGTTGCGGAAG+TGG - chr7_4:57772688-57772707 Msa1165780:intron 55.0%
GGGCATTCACTTGGGAAAGG+GGG - chr7_4:57772866-57772885 Msa1165780:CDS 55.0%
! CTTTTCCATCGAGACAGCGC+TGG + chr7_4:57773407-57773426 None:intergenic 55.0%
TGGTGGAAGAGGTTGCTGCG+TGG - chr7_4:57771605-57771624 Msa1165780:intron 60.0%
GTTGCTGCGTGGAGAAGGCA+AGG - chr7_4:57771616-57771635 Msa1165780:intron 60.0%
CAGAAATTCGGCGGGATGGG+TGG - chr7_4:57772171-57772190 Msa1165780:intron 60.0%
! GGCGGCTTGGGAGGAATGAT+GGG - chr7_4:57772225-57772244 Msa1165780:intron 60.0%
! GCGGCTTGGGAGGAATGATG+GGG - chr7_4:57772226-57772245 Msa1165780:intron 60.0%
! CGGCTTGGGAGGAATGATGG+GGG - chr7_4:57772227-57772246 Msa1165780:intron 60.0%
! GGCTTGGGAGGAATGATGGG+GGG - chr7_4:57772228-57772247 Msa1165780:intron 60.0%
! GGAGGAATGATGGGGGGCAT+GGG - chr7_4:57772234-57772253 Msa1165780:intron 60.0%
! ATGGGGGGCATGGGAGGAAT+GGG - chr7_4:57772243-57772262 Msa1165780:intron 60.0%
CATGGGAGGAATGGGAGGCA+TGG - chr7_4:57772251-57772270 Msa1165780:intron 60.0%
! GGAGGCATGGGAGGAATGGA+AGG - chr7_4:57772264-57772283 Msa1165780:intron 60.0%
GGAGGAATGGAAGGACTGGG+AGG - chr7_4:57772273-57772292 Msa1165780:intron 60.0%
CCAGCAGCATCTTGCTCTCC+AGG + chr7_4:57773139-57773158 None:intergenic 60.0%
CCTGGAGAGCAAGATGCTGC+TGG - chr7_4:57773136-57773155 Msa1165780:intron 60.0%
TCTAGCCAGCGCTGTCTCGA+TGG - chr7_4:57773399-57773418 Msa1165780:intron 60.0%
! GGAGGAATGGGAGGCATGGG+CGG - chr7_4:57772207-57772226 Msa1165780:intron 65.0%
! AATGGGAGGCATGGGCGGCT+TGG - chr7_4:57772212-57772231 Msa1165780:intron 65.0%
! ATGGGAGGCATGGGCGGCTT+GGG - chr7_4:57772213-57772232 Msa1165780:intron 65.0%
! GGGCGGCTTGGGAGGAATGA+TGG - chr7_4:57772224-57772243 Msa1165780:intron 65.0%
! GGGAGGAATGATGGGGGGCA+TGG - chr7_4:57772233-57772252 Msa1165780:intron 65.0%
! GGAATGATGGGGGGCATGGG+AGG - chr7_4:57772237-57772256 Msa1165780:intron 65.0%
! GATGGGGGGCATGGGAGGAA+TGG - chr7_4:57772242-57772261 Msa1165780:intron 65.0%
! GGAGGAATGGGAGGCATGGG+AGG - chr7_4:57772207-57772226 Msa1165780:intron 65.0%
! GATGCTGCTGGCAAGAGCGC+TGG - chr7_4:57773148-57773167 Msa1165780:intron 65.0%
!! TGCTGGCAAGAGCGCTGGTG+AGG - chr7_4:57773153-57773172 Msa1165780:intron 65.0%
! GGGGGCATGGGAGGAATGGG+AGG - chr7_4:57772246-57772265 Msa1165780:intron 70.0%
! GGAGGCATGGGCGGCTTGGG+AGG - chr7_4:57772216-57772235 Msa1165780:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 57770558 57773616 57770558 ID=Msa1165780;Name=Msa1165780
chr7_4 mRNA 57770558 57773616 57770558 ID=Msa1165780-mRNA-1;Parent=Msa1165780;Name=Msa1165780-mRNA-1;_AED=0.19;_eAED=0.19;_QI=87|0.83|0.85|1|1|1|7|400|216
chr7_4 exon 57770558 57771055 57770558 ID=Msa1165780-mRNA-1:exon:17528;Parent=Msa1165780-mRNA-1
chr7_4 exon 57771723 57771780 57771723 ID=Msa1165780-mRNA-1:exon:17527;Parent=Msa1165780-mRNA-1
chr7_4 exon 57771866 57772000 57771866 ID=Msa1165780-mRNA-1:exon:17526;Parent=Msa1165780-mRNA-1
chr7_4 exon 57772368 57772378 57772368 ID=Msa1165780-mRNA-1:exon:17525;Parent=Msa1165780-mRNA-1
chr7_4 exon 57772476 57772632 57772476 ID=Msa1165780-mRNA-1:exon:17524;Parent=Msa1165780-mRNA-1
chr7_4 exon 57772818 57773004 57772818 ID=Msa1165780-mRNA-1:exon:17523;Parent=Msa1165780-mRNA-1
chr7_4 exon 57773525 57773616 57773525 ID=Msa1165780-mRNA-1:exon:17522;Parent=Msa1165780-mRNA-1
chr7_4 five_prime_UTR 57773530 57773616 57773530 ID=Msa1165780-mRNA-1:five_prime_utr;Parent=Msa1165780-mRNA-1
chr7_4 CDS 57773525 57773529 57773525 ID=Msa1165780-mRNA-1:cds;Parent=Msa1165780-mRNA-1
chr7_4 CDS 57772818 57773004 57772818 ID=Msa1165780-mRNA-1:cds;Parent=Msa1165780-mRNA-1
chr7_4 CDS 57772476 57772632 57772476 ID=Msa1165780-mRNA-1:cds;Parent=Msa1165780-mRNA-1
chr7_4 CDS 57772368 57772378 57772368 ID=Msa1165780-mRNA-1:cds;Parent=Msa1165780-mRNA-1
chr7_4 CDS 57771866 57772000 57771866 ID=Msa1165780-mRNA-1:cds;Parent=Msa1165780-mRNA-1
chr7_4 CDS 57771723 57771780 57771723 ID=Msa1165780-mRNA-1:cds;Parent=Msa1165780-mRNA-1
chr7_4 CDS 57770958 57771055 57770958 ID=Msa1165780-mRNA-1:cds;Parent=Msa1165780-mRNA-1
chr7_4 three_prime_UTR 57770558 57770957 57770558 ID=Msa1165780-mRNA-1:three_prime_utr;Parent=Msa1165780-mRNA-1
Gene Sequence

>Msa1165780

ATGAGTCGTCATCCCGAGGTTAAGTGGGCACAGAGAGTAGACAAGGTCTACATCACAGTGCAGTTGGCTGATTCCAAAAATTCCAAAGTTGATCTTACTCCAGAAGGTGATTTTACCTTTTCTGGTAGTGCTGGTGCTGGAGACAATCAGTATGAGCTGAAACTTGAGCTCTTTGACAAGGTTAATGTAGAGGAGAGCAAAATCAGTGTAGGAGTGCGAAACATATTCTGTGTAGTGCAGAAGGCTGAGAGTGGATGGTGGAAGAGGTTGCTGCGTGGAGAAGGCAAGGCTCCTCATTATGTGAAAATAGATTGGGATAAATGGGTCGATGAAGATGAGGCTGAAGAAGGTGGTGGTGATAAATTCGGCGGGATGGGTGGTGATGATCCAATGGGAGGAATGGGAGGCATGGGCGGCTTGGGAGGAATGATGGGGGGCATGGGAGGAATGGGAGGCATGGGAGGAATGGAAGGACTGGGAGGAATGGACTTCTCTAAATTTGCTGGGATGGGTGGTGATGCAATGGATGATATTGACGAGAGTGACGATGAAGATCAAGAAGTGTCAAAGCCTGGAGAGCAAGATGCTGCTGGCAAGAGCGCTGGTGAGGCAGCTACAGAGAGTAAAGTAGAAGCTACCCCGAGCACATAA

Protein sequence

>Msa1165780

MSRHPEVKWAQRVDKVYITVQLADSKNSKVDLTPEGDFTFSGSAGAGDNQYELKLELFDKVNVEESKISVGVRNIFCVVQKAESGWWKRLLRGEGKAPHYVKIDWDKWVDEDEAEEGGGDKFGGMGGDDPMGGMGGMGGLGGMMGGMGGMGGMGGMEGLGGMDFSKFAGMGGDAMDDIDESDDEDQEVSKPGEQDAAGKSAGEAATESKVEATPST*