Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982820 | XP_013461081.2 | 96.844 | 697 | 22 | 0 | 1 | 697 | 207 | 903 | 0.0 | 1412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982820 | sp|O24370|LOX21_SOLTU | 64.235 | 699 | 244 | 6 | 2 | 697 | 204 | 899 | 0.0 | 965 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982820 | A0A396ITZ7 | 96.844 | 697 | 22 | 0 | 1 | 697 | 207 | 903 | 0.0 | 1412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0638280 | Msa0982820 | 0.806266 | 8.942290e-50 | -8.615850e-47 |
| Msa0197660 | Msa0982820 | 0.800237 | 1.583396e-48 | -8.615850e-47 |
| Msa0419960 | Msa0982820 | 0.881456 | 2.364672e-70 | -8.615850e-47 |
| Msa0464900 | Msa0982820 | 0.801060 | 1.075753e-48 | -8.615850e-47 |
| Msa0466050 | Msa0982820 | 0.809386 | 1.941510e-50 | -8.615850e-47 |
| Msa0982820 | Msa1082500 | 0.800806 | 1.212747e-48 | -8.615850e-47 |
| Msa0982820 | Msa1267060 | 0.805532 | 1.275910e-49 | -8.615850e-47 |
| Msa0982820 | Msa1401530 | 0.806749 | 7.072793e-50 | -8.615850e-47 |
| Msa0239800 | Msa0982820 | 0.808111 | 3.636569e-50 | -8.615850e-47 |
| Msa0317510 | Msa0982820 | 0.814640 | 1.389979e-51 | -8.615850e-47 |
| Msa0347360 | Msa0982820 | 0.802040 | 6.774151e-49 | -8.615850e-47 |
| Msa0517350 | Msa0982820 | 0.919513 | 4.098432e-87 | -8.615850e-47 |
| Msa0855310 | Msa0982820 | 0.804435 | 2.163640e-49 | -8.615850e-47 |
| Msa0867890 | Msa0982820 | 0.800444 | 1.437382e-48 | -8.615850e-47 |
| Msa0870620 | Msa0982820 | 0.814299 | 1.653189e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982820 | MtrunA17_Chr3g0118651 | 96.844 | 697 | 22 | 0 | 1 | 697 | 207 | 903 | 0.0 | 1412 |
| Msa0982820 | MtrunA17_Chr3g0118641 | 78.510 | 698 | 148 | 2 | 1 | 697 | 206 | 902 | 0.0 | 1172 |
| Msa0982820 | MtrunA17_Chr3g0118621 | 78.080 | 698 | 150 | 3 | 2 | 697 | 169 | 865 | 0.0 | 1129 |
| Msa0982820 | MtrunA17_Chr4g0033171 | 65.473 | 698 | 235 | 4 | 2 | 697 | 32 | 725 | 0.0 | 990 |
| Msa0982820 | MtrunA17_Chr8g0377101 | 50.355 | 705 | 334 | 9 | 2 | 697 | 219 | 916 | 0.0 | 735 |
| Msa0982820 | MtrunA17_Chr8g0344201 | 49.573 | 702 | 341 | 7 | 2 | 696 | 231 | 926 | 0.0 | 718 |
| Msa0982820 | MtrunA17_Chr1g0191921 | 47.653 | 703 | 355 | 8 | 2 | 697 | 162 | 858 | 0.0 | 646 |
| Msa0982820 | MtrunA17_Chr1g0205611 | 47.051 | 712 | 351 | 10 | 2 | 697 | 155 | 856 | 0.0 | 641 |
| Msa0982820 | MtrunA17_Chr8g0343031 | 45.804 | 703 | 361 | 10 | 2 | 697 | 176 | 865 | 0.0 | 635 |
| Msa0982820 | MtrunA17_Chr2g0329911 | 46.011 | 702 | 363 | 9 | 2 | 697 | 170 | 861 | 0.0 | 634 |
| Msa0982820 | MtrunA17_Chr8g0342881 | 46.535 | 707 | 352 | 11 | 2 | 697 | 165 | 856 | 0.0 | 630 |
| Msa0982820 | MtrunA17_Chr2g0329901 | 46.648 | 701 | 357 | 10 | 2 | 697 | 175 | 863 | 0.0 | 629 |
| Msa0982820 | MtrunA17_Chr8g0343021 | 46.011 | 702 | 361 | 10 | 2 | 697 | 175 | 864 | 0.0 | 627 |
| Msa0982820 | MtrunA17_Chr8g0342971 | 45.969 | 707 | 356 | 11 | 2 | 697 | 179 | 870 | 0.0 | 622 |
| Msa0982820 | MtrunA17_Chr5g0406871 | 45.184 | 706 | 361 | 10 | 2 | 697 | 178 | 867 | 0.0 | 620 |
| Msa0982820 | MtrunA17_Chr8g0342921 | 46.110 | 707 | 355 | 11 | 2 | 697 | 178 | 869 | 0.0 | 617 |
| Msa0982820 | MtrunA17_Chr8g0343011 | 45.429 | 700 | 365 | 9 | 2 | 697 | 179 | 865 | 0.0 | 614 |
| Msa0982820 | MtrunA17_Chr8g0342931 | 45.892 | 706 | 358 | 12 | 2 | 697 | 59 | 750 | 0.0 | 612 |
| Msa0982820 | MtrunA17_Chr7g0272791 | 45.262 | 707 | 367 | 11 | 2 | 697 | 170 | 867 | 0.0 | 610 |
| Msa0982820 | MtrunA17_Chr8g0342891 | 46.176 | 706 | 356 | 11 | 2 | 697 | 170 | 861 | 0.0 | 610 |
| Msa0982820 | MtrunA17_Chr4g0047281 | 45.184 | 706 | 348 | 12 | 1 | 696 | 218 | 894 | 0.0 | 607 |
| Msa0982820 | MtrunA17_Chr8g0344211 | 45.326 | 706 | 362 | 10 | 2 | 697 | 177 | 868 | 0.0 | 605 |
| Msa0982820 | MtrunA17_Chr8g0342901 | 44.857 | 700 | 348 | 10 | 2 | 697 | 163 | 828 | 0.0 | 591 |
| Msa0982820 | MtrunA17_Chr8g0342951 | 45.042 | 706 | 364 | 10 | 2 | 697 | 177 | 868 | 0.0 | 585 |
| Msa0982820 | MtrunA17_Chr3g0120071 | 44.223 | 701 | 375 | 11 | 2 | 697 | 169 | 858 | 0.0 | 585 |
| Msa0982820 | MtrunA17_Chr8g0342981 | 44.147 | 709 | 352 | 15 | 2 | 697 | 146 | 823 | 0.0 | 555 |
| Msa0982820 | MtrunA17_Chr8g0342991 | 43.571 | 700 | 340 | 10 | 2 | 697 | 159 | 807 | 0.0 | 538 |
| Msa0982820 | MtrunA17_Chr8g0343001 | 42.857 | 700 | 345 | 10 | 2 | 697 | 159 | 807 | 3.69e-177 | 525 |
| Msa0982820 | MtrunA17_Chr8g0338451 | 41.210 | 694 | 376 | 16 | 2 | 680 | 174 | 850 | 1.06e-170 | 511 |
| Msa0982820 | MtrunA17_Chr8g0344241 | 45.025 | 402 | 207 | 5 | 303 | 697 | 67 | 461 | 7.94e-115 | 353 |
| Msa0982820 | MtrunA17_Chr6g0471951 | 37.475 | 499 | 262 | 10 | 162 | 652 | 18 | 474 | 8.90e-108 | 335 |
| Msa0982820 | MtrunA17_Chr7g0218231 | 97.479 | 119 | 3 | 0 | 347 | 465 | 14 | 132 | 5.08e-78 | 245 |
| Msa0982820 | MtrunA17_Chr6g0468081 | 97.753 | 89 | 2 | 0 | 377 | 465 | 1 | 89 | 8.74e-55 | 182 |
| Msa0982820 | MtrunA17_Chr4g0047271 | 46.154 | 91 | 48 | 1 | 607 | 696 | 1 | 91 | 8.01e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982820 | AT3G45140.1 | 58.345 | 701 | 280 | 5 | 2 | 697 | 203 | 896 | 0.0 | 858 |
| Msa0982820 | AT3G45140.2 | 58.345 | 701 | 280 | 5 | 2 | 697 | 61 | 754 | 0.0 | 857 |
| Msa0982820 | AT1G67560.1 | 49.574 | 704 | 339 | 10 | 3 | 697 | 221 | 917 | 0.0 | 708 |
| Msa0982820 | AT1G72520.1 | 49.645 | 705 | 336 | 12 | 2 | 697 | 232 | 926 | 0.0 | 703 |
| Msa0982820 | AT1G17420.1 | 48.791 | 703 | 344 | 9 | 2 | 697 | 226 | 919 | 0.0 | 697 |
| Msa0982820 | AT1G55020.1 | 49.364 | 707 | 335 | 12 | 2 | 697 | 165 | 859 | 0.0 | 656 |
| Msa0982820 | AT3G22400.1 | 45.992 | 711 | 361 | 11 | 2 | 697 | 184 | 886 | 0.0 | 627 |
Find 173 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAGCAATGTTAAATTAT+TGG | 0.149707 | 6_4:+22541175 | None:intergenic |
| ATTCTGGTGGACCATAAATT+TGG | 0.173285 | 6_4:+22540730 | None:intergenic |
| CTAGCAATTGTAGGTCTATT+AGG | 0.189376 | 6_4:+22539444 | None:intergenic |
| AAATTGGATGCCCAAATTTA+TGG | 0.209486 | 6_4:-22540741 | Msa0982820:CDS |
| CAATTATTGCCTTGACTAAT+TGG | 0.209625 | 6_4:+22540876 | None:intergenic |
| TTTGAGTTACCAGCAGATTT+TGG | 0.210007 | 6_4:-22542236 | Msa0982820:five_prime_UTR |
| TTGACTAATTGGATGCTATT+TGG | 0.210653 | 6_4:+22540887 | None:intergenic |
| TGACTAATTGGATGCTATTT+GGG | 0.253957 | 6_4:+22540888 | None:intergenic |
| CTTCTGATTCTACCAATCTT+TGG | 0.255433 | 6_4:-22540355 | Msa0982820:CDS |
| GAGCTCACTAGACCGATTAT+TGG | 0.258181 | 6_4:-22540413 | Msa0982820:CDS |
| ATAGCATTTGAAAGGTTTAA+TGG | 0.262850 | 6_4:-22539213 | Msa0982820:CDS |
| TCAAATGCTATCTTTATATC+TGG | 0.267837 | 6_4:+22539225 | None:intergenic |
| AACTTTGCACAATATGCTTA+TGG | 0.278802 | 6_4:-22539477 | Msa0982820:CDS |
| CAAACCTGAGCAAACACTTT+TGG | 0.281831 | 6_4:-22539367 | Msa0982820:CDS |
| CTAAATAACATAGTCCTTGA+TGG | 0.285243 | 6_4:-22542164 | Msa0982820:five_prime_UTR |
| ATGGCCTCTGAGAAGTAAAT+TGG | 0.305851 | 6_4:-22540757 | Msa0982820:CDS |
| TTTAGGCCATGTTGTGCATT+AGG | 0.307604 | 6_4:+22539774 | None:intergenic |
| GTGAAGAAAACTCTCTTTGT+AGG | 0.309146 | 6_4:+22542080 | None:intergenic |
| CAAATGATGGTCTTCTCATA+TGG | 0.312417 | 6_4:-22539725 | Msa0982820:CDS |
| GATTCAATGATGCTTGGATT+TGG | 0.313188 | 6_4:+22539657 | None:intergenic |
| TAGCAATTGTAGGTCTATTA+GGG | 0.314837 | 6_4:+22539445 | None:intergenic |
| ATTCTACCAATCTTTGGCTT+TGG | 0.318489 | 6_4:-22540349 | Msa0982820:CDS |
| TATCAAAGCGCAAAAGGTTT+TGG | 0.327729 | 6_4:+22541114 | None:intergenic |
| TGGAAATGTGGGCGCTGTTT+TGG | 0.329432 | 6_4:-22542216 | Msa0982820:five_prime_UTR |
| TTCAAATGAAGGAACAAATT+CGG | 0.330717 | 6_4:-22542330 | None:intergenic |
| CCTTTGTGATTGCAACAAAT+AGG | 0.332818 | 6_4:-22540152 | Msa0982820:CDS |
| CTTTGTAGGTGTATCATGCT+TGG | 0.333114 | 6_4:+22542094 | None:intergenic |
| GTGACTCCAGGTCCTGAAAA+TGG | 0.335649 | 6_4:+22539090 | None:intergenic |
| CTACCAATCTTTGGCTTTGG+AGG | 0.343171 | 6_4:-22540346 | Msa0982820:CDS |
| AAACTCAAAAGACCTGTTCT+TGG | 0.345034 | 6_4:-22541741 | Msa0982820:CDS |
| GCTTTGGCAATTTGATTTGC+AGG | 0.346703 | 6_4:-22539959 | Msa0982820:CDS |
| GTCATCGAGTCGCAGATAAT+TGG | 0.351690 | 6_4:-22540690 | Msa0982820:CDS |
| TACTAAATAGATATGCTATA+TGG | 0.354697 | 6_4:+22539054 | None:intergenic |
| TTCTCCCATTCTTCCTTTGT+AGG | 0.357198 | 6_4:+22539399 | None:intergenic |
| AATGGTTTCATTAGCTCATA+AGG | 0.360058 | 6_4:+22539108 | None:intergenic |
| TGGCTTCAATGTGCCTTGTT+TGG | 0.360768 | 6_4:+22540445 | None:intergenic |
| TTGCAGGAGACAAATTCTTT+TGG | 0.363534 | 6_4:-22540955 | Msa0982820:intron |
| TAGCATTTGAAAGGTTTAAT+GGG | 0.363606 | 6_4:-22539212 | Msa0982820:CDS |
| TCCCTCACTTTGCTTACATA+TGG | 0.365328 | 6_4:+22540515 | None:intergenic |
| CAAATACTAATTTGAAGAAT+AGG | 0.370666 | 6_4:-22539149 | Msa0982820:CDS |
| AGTCTTCTATTGCTAGCTTT+AGG | 0.378934 | 6_4:+22539757 | None:intergenic |
| ATTCTCACAGACATAAATCT+TGG | 0.383754 | 6_4:-22541266 | Msa0982820:CDS |
| AAACAATTTCTTCTCTTGAA+TGG | 0.386249 | 6_4:+22540565 | None:intergenic |
| TCTCTCGTGATAGCTGATTC+TGG | 0.393236 | 6_4:+22540714 | None:intergenic |
| GAGATTCTTATTAGTTCATA+TGG | 0.393969 | 6_4:-22540048 | Msa0982820:CDS |
| CCTTGGATACGGATATTGTT+TGG | 0.398283 | 6_4:+22541713 | None:intergenic |
| TTTGTAGGTGTATCATGCTT+GGG | 0.400836 | 6_4:+22542095 | None:intergenic |
| CTGTGGCATATGATAAGCTT+TGG | 0.401553 | 6_4:-22539975 | Msa0982820:CDS |
| ATGTTGTTTCTAGCAATTGT+AGG | 0.408062 | 6_4:+22539435 | None:intergenic |
| TCCATCTTAGTTGTCGATCA+TGG | 0.412724 | 6_4:-22542124 | Msa0982820:five_prime_UTR |
| TTGAGTTTAATGTTGGTCTC+AGG | 0.412871 | 6_4:+22541756 | None:intergenic |
| TTTGCTAGGGAGACTTTGGC+AGG | 0.413977 | 6_4:-22540917 | Msa0982820:CDS |
| TATGATGTCTACAATGATCT+TGG | 0.416200 | 6_4:-22541783 | Msa0982820:CDS |
| TTTCAATTACCATCATCTCT+TGG | 0.418695 | 6_4:-22541200 | Msa0982820:CDS |
| TGTGGTTTGTCGCCAATAAT+CGG | 0.420168 | 6_4:+22540401 | None:intergenic |
| TTCTGGTGGACCATAAATTT+GGG | 0.424260 | 6_4:+22540731 | None:intergenic |
| TGAGGCGTTTGCTGAGATAA+AGG | 0.424456 | 6_4:-22541354 | Msa0982820:CDS |
| TGATCAGATTCAATGATGCT+TGG | 0.424472 | 6_4:+22539651 | None:intergenic |
| ACCAGTGGCTTATAAGTTCA+TGG | 0.425133 | 6_4:+22540285 | None:intergenic |
| TCTCCCATTCTTCCTTTGTA+GGG | 0.428559 | 6_4:+22539400 | None:intergenic |
| CTAAGCTTTCTTAATCCACT+TGG | 0.430925 | 6_4:+22541876 | None:intergenic |
| ATGAAGAATACTACACTGTA+TGG | 0.431751 | 6_4:-22540491 | Msa0982820:CDS |
| CACTCCAAAAGTGTTTGCTC+AGG | 0.438001 | 6_4:+22539363 | None:intergenic |
| TTCACCAGATGAAGAGTACT+TGG | 0.441500 | 6_4:-22539280 | Msa0982820:CDS |
| CATGTTCTTACTCATGATAC+TGG | 0.449029 | 6_4:-22540311 | Msa0982820:CDS |
| AGAAGACCATCATTTGCAAA+AGG | 0.449584 | 6_4:+22539732 | None:intergenic |
| GTATGATAATAAGTTCAAAA+TGG | 0.450817 | 6_4:+22539305 | None:intergenic |
| CTAGTGAGCTCAATGACTAT+TGG | 0.450930 | 6_4:+22540425 | None:intergenic |
| GGTCGAAAGCATTCTAATAC+AGG | 0.461714 | 6_4:-22541678 | Msa0982820:intron |
| TACCGGTGGAGAAGATCATT+TGG | 0.465498 | 6_4:+22539931 | None:intergenic |
| AAGGTTTAATGGGAGATTGA+AGG | 0.467037 | 6_4:-22539202 | Msa0982820:CDS |
| GGAATTTGCTAGGGAGACTT+TGG | 0.467432 | 6_4:-22540921 | Msa0982820:CDS |
| TGTTTGGTGCCACCAAGAAC+AGG | 0.467750 | 6_4:+22541729 | None:intergenic |
| ACTCCCTTTCCAGTGACTCC+AGG | 0.469105 | 6_4:+22539078 | None:intergenic |
| TGTCCCAAGTACTCTTCATC+TGG | 0.470767 | 6_4:+22539276 | None:intergenic |
| ATTGTGGAAATGTGATATAT+AGG | 0.473415 | 6_4:+22538980 | None:intergenic |
| ATGGGATGCAATTAAACAAT+GGG | 0.473897 | 6_4:-22539706 | Msa0982820:CDS |
| AAGACCCTACAAAGGAAGAA+TGG | 0.474435 | 6_4:-22539404 | Msa0982820:CDS |
| CTAATAGAACTAAGAGGGAA+TGG | 0.477908 | 6_4:-22541843 | Msa0982820:CDS |
| GATGAGCTAATAGAACTAAG+AGG | 0.478619 | 6_4:-22541849 | Msa0982820:CDS |
| CTAAGATGGACAGGTCCATC+AGG | 0.482847 | 6_4:+22542137 | None:intergenic |
| TCCTTTGTAGGGTCTTCTGT+AGG | 0.484655 | 6_4:+22539411 | None:intergenic |
| GACTTTAATCAACCTGGGAA+TGG | 0.485837 | 6_4:+22541148 | None:intergenic |
| CTATTTGTTGCAATCACAAA+GGG | 0.485842 | 6_4:+22540153 | None:intergenic |
| AGACCCTACAAAGGAAGAAT+GGG | 0.490464 | 6_4:-22539403 | Msa0982820:CDS |
| TTGAAGAATAGGAATGGAGC+TGG | 0.490528 | 6_4:-22539138 | Msa0982820:CDS |
| ATAGACGAACTTTACAAAGA+AGG | 0.490922 | 6_4:-22541224 | Msa0982820:CDS |
| TAATTGGATGCTATTTGGGT+TGG | 0.495555 | 6_4:+22540892 | None:intergenic |
| GGACCTGGAGTCACTGGAAA+GGG | 0.496747 | 6_4:-22539081 | Msa0982820:CDS |
| CAGGGGTATCAAAGCGCAAA+AGG | 0.499404 | 6_4:+22541108 | None:intergenic |
| TATCCAAGGCGTTGTCGTAC+CGG | 0.500621 | 6_4:-22541699 | Msa0982820:CDS |
| AGAGAATGAGGTGCAATATG+AGG | 0.502465 | 6_4:-22542264 | Msa0982820:five_prime_UTR |
| CATAATCACCACTATAGCTT+GGG | 0.503457 | 6_4:-22539526 | Msa0982820:CDS |
| TGGACAGAAGTTCGAACAAA+AGG | 0.507956 | 6_4:-22539612 | Msa0982820:CDS |
| CGACCGGTACGACAACGCCT+TGG | 0.509007 | 6_4:+22541696 | None:intergenic |
| GACAACTCATTGAACCATCA+TGG | 0.509837 | 6_4:-22539257 | Msa0982820:CDS |
| ACATAATCACCACTATAGCT+TGG | 0.510325 | 6_4:-22539527 | Msa0982820:CDS |
| AACACAACCACGGCGTCCTC+AGG | 0.513052 | 6_4:-22541320 | Msa0982820:CDS |
| ATCATACGAAAAGAGAGATT+CGG | 0.513208 | 6_4:-22541396 | Msa0982820:CDS |
| AAGCCTCCAAAGCCAAAGAT+TGG | 0.513343 | 6_4:+22540343 | None:intergenic |
| AGTACTCTTCATCTGGTGAA+TGG | 0.520631 | 6_4:+22539283 | None:intergenic |
| CCCACATTTCCAAAATCTGC+TGG | 0.525769 | 6_4:+22542227 | None:intergenic |
| TCCATGATCGACAACTAAGA+TGG | 0.527836 | 6_4:+22542123 | None:intergenic |
| GTGAATATTTGTTTCCATTG+TGG | 0.529219 | 6_4:+22540383 | None:intergenic |
| ACTAATTTGAAGAATAGGAA+TGG | 0.529661 | 6_4:-22539144 | Msa0982820:CDS |
| CTCAAAAGACCTGTTCTTGG+TGG | 0.530119 | 6_4:-22541738 | Msa0982820:CDS |
| GAACTAAGAGGGAATGGAGA+AGG | 0.533603 | 6_4:-22541837 | Msa0982820:CDS |
| AACAACAACAAAAGTAATTG+TGG | 0.533894 | 6_4:+22538964 | None:intergenic |
| TTCGCAAATTCAAGCAACCT+TGG | 0.534313 | 6_4:-22539334 | Msa0982820:CDS |
| GTACGACAACGCCTTGGATA+CGG | 0.536846 | 6_4:+22541702 | None:intergenic |
| GGGAGATTGAAGGAAATTGA+AGG | 0.543222 | 6_4:-22539192 | Msa0982820:CDS |
| AGATGCTACCCAAGCTATAG+TGG | 0.544008 | 6_4:+22539518 | None:intergenic |
| CATATGGTAAATATAAATCA+TGG | 0.544415 | 6_4:+22540531 | None:intergenic |
| GGATGCAGTAACTTGTAGAT+TGG | 0.544887 | 6_4:+22540111 | None:intergenic |
| GAAGACCATCATTTGCAAAA+GGG | 0.545653 | 6_4:+22539733 | None:intergenic |
| ATATAAAGATAGCATTTGAA+AGG | 0.547239 | 6_4:-22539221 | Msa0982820:CDS |
| TTGTTCTTCCTCACCAAACA+AGG | 0.547255 | 6_4:-22540458 | Msa0982820:CDS |
| AATCCACTTGGTGTTTGTGA+TGG | 0.549751 | 6_4:+22541888 | None:intergenic |
| ATTAGCGACTTTAATCAACC+TGG | 0.555673 | 6_4:+22541142 | None:intergenic |
| TATCTGATGAGGAATTTGCT+AGG | 0.559728 | 6_4:-22540931 | Msa0982820:CDS |
| TGAAGAATAGGAATGGAGCT+GGG | 0.560809 | 6_4:-22539137 | Msa0982820:CDS |
| TGCTAGGGAGACTTTGGCAG+GGG | 0.560834 | 6_4:-22540915 | Msa0982820:CDS |
| CTTTGGCAATTTGATTTGCA+GGG | 0.562249 | 6_4:-22539958 | Msa0982820:CDS |
| TTATTGGATCCAAGAGATGA+TGG | 0.563781 | 6_4:+22541191 | None:intergenic |
| TGGTTATACCACAGTTGAAG+AGG | 0.565567 | 6_4:-22540670 | Msa0982820:intron |
| ATCTGATGAGGAATTTGCTA+GGG | 0.573680 | 6_4:-22540930 | Msa0982820:CDS |
| GATCGACAACTAAGATGGAC+AGG | 0.574532 | 6_4:+22542128 | None:intergenic |
| ACCATGAACTTATAAGCCAC+TGG | 0.574627 | 6_4:-22540286 | Msa0982820:intron |
| TCTGGATTCTCATCCCATGA+TGG | 0.575349 | 6_4:+22539243 | None:intergenic |
| ACAACTCATTGAACCATCAT+GGG | 0.576187 | 6_4:-22539256 | Msa0982820:CDS |
| CCTATTTGTTGCAATCACAA+AGG | 0.577748 | 6_4:+22540152 | None:intergenic |
| TATGGGATGCAATTAAACAA+TGG | 0.577797 | 6_4:-22539707 | Msa0982820:CDS |
| AGGACCTGGAGTCACTGGAA+AGG | 0.579892 | 6_4:-22539082 | Msa0982820:CDS |
| CCAAACAATATCCGTATCCA+AGG | 0.581077 | 6_4:-22541713 | Msa0982820:CDS |
| TGTATTAGAATGCTTTCGAC+CGG | 0.581752 | 6_4:+22541680 | None:intergenic |
| ATGAGCTAATAGAACTAAGA+GGG | 0.582546 | 6_4:-22541848 | Msa0982820:CDS |
| ACCATATGTAAGCAAAGTGA+GGG | 0.586108 | 6_4:-22540516 | Msa0982820:CDS |
| TCCAAGTGCATTTATCTGCA+AGG | 0.586289 | 6_4:+22540074 | None:intergenic |
| AAATGATGGTCTTCTCATAT+GGG | 0.587188 | 6_4:-22539724 | Msa0982820:CDS |
| AGGTTGCTTGAATTTGCGAA+GGG | 0.588741 | 6_4:+22539337 | None:intergenic |
| ACCTTGCAGATAAATGCACT+TGG | 0.589225 | 6_4:-22540075 | Msa0982820:CDS |
| AGATTGGTAGAATCAGAAGC+AGG | 0.591256 | 6_4:+22540359 | None:intergenic |
| TTTCTATGTTCCTCGAGATG+AGG | 0.593473 | 6_4:-22541372 | Msa0982820:CDS |
| TTCAATGGAATTGAGTTCTG+TGG | 0.597142 | 6_4:-22539992 | Msa0982820:CDS |
| AAGGTTGCTTGAATTTGCGA+AGG | 0.599155 | 6_4:+22539336 | None:intergenic |
| GTCCATCAGGAAAACCATCA+AGG | 0.601868 | 6_4:+22542150 | None:intergenic |
| TACCATATGTAAGCAAAGTG+AGG | 0.603607 | 6_4:-22540517 | Msa0982820:CDS |
| TACCAAATGATCTTCTCCAC+CGG | 0.604794 | 6_4:-22539933 | Msa0982820:intron |
| TTACCATCACAAACACCAAG+TGG | 0.605695 | 6_4:-22541891 | Msa0982820:CDS |
| TCAGCAAACGCCTCATCTCG+AGG | 0.612448 | 6_4:+22541362 | None:intergenic |
| TCAATGTGCCTTGTTTGGTG+AGG | 0.613172 | 6_4:+22540450 | None:intergenic |
| GTCTGTGAGAATTGTGTCCA+AGG | 0.613851 | 6_4:+22541277 | None:intergenic |
| GCTTAGTACCTCTTCAACTG+TGG | 0.616160 | 6_4:+22540662 | None:intergenic |
| CTGATCAAGAGCTTCAAGCA+TGG | 0.620687 | 6_4:-22539635 | Msa0982820:CDS |
| TTAGCGACTTTAATCAACCT+GGG | 0.622026 | 6_4:+22541143 | None:intergenic |
| TAACTTGTAGATTGGATGCA+TGG | 0.623713 | 6_4:+22540119 | None:intergenic |
| TTTGCACAATATGCTTATGG+AGG | 0.625959 | 6_4:-22539474 | Msa0982820:CDS |
| AAATAGCATCCAATTAGTCA+AGG | 0.636861 | 6_4:-22540885 | Msa0982820:intron |
| ATCAAGAGCTTCAAGCATGG+TGG | 0.642027 | 6_4:-22539632 | Msa0982820:CDS |
| TGCAAGGTATATCTGAGATG+TGG | 0.649204 | 6_4:+22540090 | None:intergenic |
| GAAGTTCGAACAAAAGGTCA+CGG | 0.654694 | 6_4:-22539606 | Msa0982820:CDS |
| CTCGTGATAGCTGATTCTGG+TGG | 0.654841 | 6_4:+22540717 | None:intergenic |
| GCATCCAATTTACTTCTCAG+AGG | 0.654968 | 6_4:+22540753 | None:intergenic |
| GTTCAAAATGGTCATCACCA+AGG | 0.657548 | 6_4:+22539317 | None:intergenic |
| TTGCTAGGGAGACTTTGGCA+GGG | 0.658261 | 6_4:-22540916 | Msa0982820:CDS |
| TAGTGGTGATTATGTCAATG+AGG | 0.663602 | 6_4:+22539535 | None:intergenic |
| TCACCAGATGAAGAGTACTT+GGG | 0.668317 | 6_4:-22539279 | Msa0982820:CDS |
| TTATTGGCGACAAACCACAA+TGG | 0.686808 | 6_4:-22540397 | Msa0982820:CDS |
| GAAGATCCTAATGCACAACA+TGG | 0.692109 | 6_4:-22539780 | Msa0982820:CDS |
| GCGACAAATCAGAAGAACCA+TGG | 0.695121 | 6_4:-22539584 | Msa0982820:CDS |
| GCCTACAGAAGACCCTACAA+AGG | 0.701209 | 6_4:-22539412 | Msa0982820:CDS |
| GATACAATTCAACACAACCA+CGG | 0.729752 | 6_4:-22541330 | Msa0982820:CDS |
| ACAAATCAGAAGAACCATGG+TGG | 0.737932 | 6_4:-22539581 | Msa0982820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAGTTTTATATATACA+TGG | - | chr6_4:22539197-22539216 | Msa0982820:CDS | 10.0% |
| !! | CAAGTAATATAATAAATATT+TGG | + | chr6_4:22540191-22540210 | None:intergenic | 10.0% |
| !! | AATAGCATACAAATTAAATT+TGG | + | chr6_4:22539254-22539273 | None:intergenic | 15.0% |
| !! | TCAAAATTATTTATATATGC+TGG | + | chr6_4:22539583-22539602 | None:intergenic | 15.0% |
| !! | CAATAATTGTTACAAATATT+TGG | - | chr6_4:22540337-22540356 | Msa0982820:CDS | 15.0% |
| !!! | TATATGTTGTTGATTTTTAT+AGG | - | chr6_4:22540999-22541018 | Msa0982820:intron | 15.0% |
| !! | ATATGTTGTAAATTAGAGAA+AGG | + | chr6_4:22539625-22539644 | None:intergenic | 20.0% |
| !!! | CATGAGAATACTTTTTTATT+TGG | + | chr6_4:22539657-22539676 | None:intergenic | 20.0% |
| !!! | TTTTACAAGTTATTTGAGTT+GGG | - | chr6_4:22540211-22540230 | Msa0982820:intron | 20.0% |
| !! | TTATATCATCTATGCTAATT+AGG | - | chr6_4:22540374-22540393 | Msa0982820:CDS | 20.0% |
| !!! | GAAATCTTTTGTTTTTTTCT+TGG | - | chr6_4:22540396-22540415 | Msa0982820:CDS | 20.0% |
| !! | GTGTATTAATTATGTTATGT+AGG | - | chr6_4:22540418-22540437 | Msa0982820:CDS | 20.0% |
| !! | TTAATTATGTTATGTAGGAA+TGG | - | chr6_4:22540423-22540442 | Msa0982820:CDS | 20.0% |
| !! | CATATGGTAAATATAAATCA+TGG | + | chr6_4:22540671-22540690 | None:intergenic | 20.0% |
| !!! | TTGTTGATTTTTATAGGTTA+AGG | - | chr6_4:22541005-22541024 | Msa0982820:intron | 20.0% |
| !!! | CTTTACTAAAAAGTATTCAA+TGG | - | chr6_4:22541192-22541211 | Msa0982820:CDS | 20.0% |
| !! | GTATGATAATAAGTTCAAAA+TGG | + | chr6_4:22541897-22541916 | None:intergenic | 20.0% |
| !! | ATATAAAGATAGCATTTGAA+AGG | - | chr6_4:22541978-22541997 | Msa0982820:intron | 20.0% |
| !! | CAAATACTAATTTGAAGAAT+AGG | - | chr6_4:22542050-22542069 | Msa0982820:intron | 20.0% |
| !! | TACTAAATAGATATGCTATA+TGG | + | chr6_4:22542148-22542167 | None:intergenic | 20.0% |
| ! | TTTGGTCATGTAAATAAAGT+TGG | + | chr6_4:22539236-22539255 | None:intergenic | 25.0% |
| !!! | AAAAACAATTTTGGAATCCT+TGG | - | chr6_4:22539905-22539924 | Msa0982820:intron | 25.0% |
| ! | TTGGAGCAATGTTAAATTAT+TGG | + | chr6_4:22540027-22540046 | None:intergenic | 25.0% |
| !! | GTTTTACAAGTTATTTGAGT+TGG | - | chr6_4:22540210-22540229 | Msa0982820:intron | 25.0% |
| !!! | TGTTTAATTTGAGTATATGC+AGG | - | chr6_4:22540611-22540630 | Msa0982820:intron | 25.0% |
| ! | AAACAATTTCTTCTCTTGAA+TGG | + | chr6_4:22540637-22540656 | None:intergenic | 25.0% |
| !! | ATCAATTTTTACCTTGATTC+CGG | - | chr6_4:22540949-22540968 | Msa0982820:CDS | 25.0% |
| ! | GAGATTCTTATTAGTTCATA+TGG | - | chr6_4:22541151-22541170 | Msa0982820:CDS | 25.0% |
| ! | GATATAGTGAGAGAAATTTA+GGG | + | chr6_4:22541354-22541373 | None:intergenic | 25.0% |
| ! | TGATATAGTGAGAGAAATTT+AGG | + | chr6_4:22541355-22541374 | None:intergenic | 25.0% |
| !! | TCTTTTTGTGTTTTCAGATT+TGG | + | chr6_4:22541644-22541663 | None:intergenic | 25.0% |
| ! | TCAAATGCTATCTTTATATC+TGG | + | chr6_4:22541977-22541996 | None:intergenic | 25.0% |
| ! | ATAGCATTTGAAAGGTTTAA+TGG | - | chr6_4:22541986-22542005 | Msa0982820:intron | 25.0% |
| ! | TAGCATTTGAAAGGTTTAAT+GGG | - | chr6_4:22541987-22542006 | Msa0982820:intron | 25.0% |
| ! | ACTAATTTGAAGAATAGGAA+TGG | - | chr6_4:22542055-22542074 | Msa0982820:intron | 25.0% |
| ! | ATTGTGGAAATGTGATATAT+AGG | + | chr6_4:22542222-22542241 | None:intergenic | 25.0% |
| ! | AACAACAACAAAAGTAATTG+TGG | + | chr6_4:22542238-22542257 | None:intergenic | 25.0% |
| !! | TTTTTCTTGAATCTCTTTGA+TGG | - | chr6_4:22542287-22542306 | Msa0982820:five_prime_UTR | 25.0% |
| TCGGAGAAAAAGACAATAAA+AGG | - | chr6_4:22538888-22538907 | Msa0982820:three_prime_UTR | 30.0% | |
| AACTGAGAAAAAAGAGAATG+AGG | - | chr6_4:22538923-22538942 | Msa0982820:three_prime_UTR | 30.0% | |
| CTAAATAACATAGTCCTTGA+TGG | - | chr6_4:22539035-22539054 | Msa0982820:intron | 30.0% | |
| GTCATGTAAATAAAGTTGGA+TGG | + | chr6_4:22539232-22539251 | None:intergenic | 30.0% | |
| ATGAGCTAATAGAACTAAGA+GGG | - | chr6_4:22539351-22539370 | Msa0982820:CDS | 30.0% | |
| TATGATGTCTACAATGATCT+TGG | - | chr6_4:22539416-22539435 | Msa0982820:CDS | 30.0% | |
| !!! | AGGTCTTTTGAGTTTAATGT+TGG | + | chr6_4:22539453-22539472 | None:intergenic | 30.0% |
| CTGGACAACTAAAATGAAAT+AGG | + | chr6_4:22539564-22539583 | None:intergenic | 30.0% | |
| ATCATACGAAAAGAGAGATT+CGG | - | chr6_4:22539803-22539822 | Msa0982820:intron | 30.0% | |
| !!! | CAAAATTGTTTTTACTCCTG+AGG | + | chr6_4:22539898-22539917 | None:intergenic | 30.0% |
| ! | CTCAGGAGTAAAAACAATTT+TGG | - | chr6_4:22539896-22539915 | Msa0982820:intron | 30.0% |
| ATTCTCACAGACATAAATCT+TGG | - | chr6_4:22539933-22539952 | Msa0982820:intron | 30.0% | |
| ATAGACGAACTTTACAAAGA+AGG | - | chr6_4:22539975-22539994 | Msa0982820:CDS | 30.0% | |
| TTTCAATTACCATCATCTCT+TGG | - | chr6_4:22539999-22540018 | Msa0982820:CDS | 30.0% | |
| ! | TGACTAATTGGATGCTATTT+GGG | + | chr6_4:22540314-22540333 | None:intergenic | 30.0% |
| TTGACTAATTGGATGCTATT+TGG | + | chr6_4:22540315-22540334 | None:intergenic | 30.0% | |
| AAATAGCATCCAATTAGTCA+AGG | - | chr6_4:22540314-22540333 | Msa0982820:CDS | 30.0% | |
| CAATTATTGCCTTGACTAAT+TGG | + | chr6_4:22540326-22540345 | None:intergenic | 30.0% | |
| AAATTGGATGCCCAAATTTA+TGG | - | chr6_4:22540458-22540477 | Msa0982820:CDS | 30.0% | |
| ATGAAGAATACTACACTGTA+TGG | - | chr6_4:22540708-22540727 | Msa0982820:CDS | 30.0% | |
| GTGAATATTTGTTTCCATTG+TGG | + | chr6_4:22540819-22540838 | None:intergenic | 30.0% | |
| ! | CTATTTGTTGCAATCACAAA+GGG | + | chr6_4:22541049-22541068 | None:intergenic | 30.0% |
| ATGATACGTATAGACTTTAC+CGG | + | chr6_4:22541288-22541307 | None:intergenic | 30.0% | |
| !! | GCAAATTGTTGTTCTTTTAG+AGG | - | chr6_4:22541386-22541405 | Msa0982820:CDS | 30.0% |
| !! | TTGTTGTTCTTTTAGAGGAA+TGG | - | chr6_4:22541391-22541410 | Msa0982820:CDS | 30.0% |
| AAATGATGGTCTTCTCATAT+GGG | - | chr6_4:22541475-22541494 | Msa0982820:intron | 30.0% | |
| TATGGGATGCAATTAAACAA+TGG | - | chr6_4:22541492-22541511 | Msa0982820:intron | 30.0% | |
| ATGGGATGCAATTAAACAAT+GGG | - | chr6_4:22541493-22541512 | Msa0982820:intron | 30.0% | |
| AACTTTGCACAATATGCTTA+TGG | - | chr6_4:22541722-22541741 | Msa0982820:CDS | 30.0% | |
| TAGCAATTGTAGGTCTATTA+GGG | + | chr6_4:22541757-22541776 | None:intergenic | 30.0% | |
| !! | ATGTTGTTTCTAGCAATTGT+AGG | + | chr6_4:22541767-22541786 | None:intergenic | 30.0% |
| AATGGTTTCATTAGCTCATA+AGG | + | chr6_4:22542094-22542113 | None:intergenic | 30.0% | |
| !! | TTTGAGTTACCAGCAGATTT+TGG | - | chr6_4:22538963-22538982 | Msa0982820:three_prime_UTR | 35.0% |
| TTTGTAGGTGTATCATGCTT+GGG | + | chr6_4:22539107-22539126 | None:intergenic | 35.0% | |
| GTGAAGAAAACTCTCTTTGT+AGG | + | chr6_4:22539122-22539141 | None:intergenic | 35.0% | |
| ! | GAGAGTTTTCTTCACTAACA+AGG | - | chr6_4:22539127-22539146 | Msa0982820:CDS | 35.0% |
| CTAAGCTTTCTTAATCCACT+TGG | + | chr6_4:22539326-22539345 | None:intergenic | 35.0% | |
| GATGAGCTAATAGAACTAAG+AGG | - | chr6_4:22539350-22539369 | Msa0982820:CDS | 35.0% | |
| CTAATAGAACTAAGAGGGAA+TGG | - | chr6_4:22539356-22539375 | Msa0982820:CDS | 35.0% | |
| ! | TTGAGTTTAATGTTGGTCTC+AGG | + | chr6_4:22539446-22539465 | None:intergenic | 35.0% |
| AAACTCAAAAGACCTGTTCT+TGG | - | chr6_4:22539458-22539477 | Msa0982820:CDS | 35.0% | |
| TGTATTAGAATGCTTTCGAC+CGG | + | chr6_4:22539522-22539541 | None:intergenic | 35.0% | |
| ! | GAATCTCTCTTTTCGTATGA+TGG | + | chr6_4:22539804-22539823 | None:intergenic | 35.0% |
| GATACAATTCAACACAACCA+CGG | - | chr6_4:22539869-22539888 | Msa0982820:intron | 35.0% | |
| TTATTGGATCCAAGAGATGA+TGG | + | chr6_4:22540011-22540030 | None:intergenic | 35.0% | |
| TTAGCGACTTTAATCAACCT+GGG | + | chr6_4:22540059-22540078 | None:intergenic | 35.0% | |
| ATTAGCGACTTTAATCAACC+TGG | + | chr6_4:22540060-22540079 | None:intergenic | 35.0% | |
| ! | TATCAAAGCGCAAAAGGTTT+TGG | + | chr6_4:22540088-22540107 | None:intergenic | 35.0% |
| !! | CTTACTTTTAAGTGCTTCAG+GGG | + | chr6_4:22540111-22540130 | None:intergenic | 35.0% |
| !! | GCTTACTTTTAAGTGCTTCA+GGG | + | chr6_4:22540112-22540131 | None:intergenic | 35.0% |
| !! | TGCTTACTTTTAAGTGCTTC+AGG | + | chr6_4:22540113-22540132 | None:intergenic | 35.0% |
| ! | TTGCAGGAGACAAATTCTTT+TGG | - | chr6_4:22540244-22540263 | Msa0982820:intron | 35.0% |
| !! | ATTCTTTTGGCTATCTGATG+AGG | - | chr6_4:22540257-22540276 | Msa0982820:intron | 35.0% |
| ! | TATCTGATGAGGAATTTGCT+AGG | - | chr6_4:22540268-22540287 | Msa0982820:intron | 35.0% |
| !! | ATCTGATGAGGAATTTGCTA+GGG | - | chr6_4:22540269-22540288 | Msa0982820:intron | 35.0% |
| ! | TAATTGGATGCTATTTGGGT+TGG | + | chr6_4:22540310-22540329 | None:intergenic | 35.0% |
| ! | TTCTGGTGGACCATAAATTT+GGG | + | chr6_4:22540471-22540490 | None:intergenic | 35.0% |
| ! | ATTCTGGTGGACCATAAATT+TGG | + | chr6_4:22540472-22540491 | None:intergenic | 35.0% |
| TACCATATGTAAGCAAAGTG+AGG | - | chr6_4:22540682-22540701 | Msa0982820:CDS | 35.0% | |
| ACCATATGTAAGCAAAGTGA+GGG | - | chr6_4:22540683-22540702 | Msa0982820:CDS | 35.0% | |
| CTTCTGATTCTACCAATCTT+TGG | - | chr6_4:22540844-22540863 | Msa0982820:intron | 35.0% | |
| ! | ATTCTACCAATCTTTGGCTT+TGG | - | chr6_4:22540850-22540869 | Msa0982820:intron | 35.0% |
| CATGTTCTTACTCATGATAC+TGG | - | chr6_4:22540888-22540907 | Msa0982820:CDS | 35.0% | |
| ! | CCTATTTGTTGCAATCACAA+AGG | + | chr6_4:22541050-22541069 | None:intergenic | 35.0% |
| CCTTTGTGATTGCAACAAAT+AGG | - | chr6_4:22541047-22541066 | Msa0982820:intron | 35.0% | |
| ! | TAACTTGTAGATTGGATGCA+TGG | + | chr6_4:22541083-22541102 | None:intergenic | 35.0% |
| TTCAATGGAATTGAGTTCTG+TGG | - | chr6_4:22541207-22541226 | Msa0982820:CDS | 35.0% | |
| !! | CTTTGGCAATTTGATTTGCA+GGG | - | chr6_4:22541241-22541260 | Msa0982820:CDS | 35.0% |
| ATAGTGAGAGAAATTTAGGG+AGG | + | chr6_4:22541351-22541370 | None:intergenic | 35.0% | |
| !! | AGTCTTCTATTGCTAGCTTT+AGG | + | chr6_4:22541445-22541464 | None:intergenic | 35.0% |
| GAAGACCATCATTTGCAAAA+GGG | + | chr6_4:22541469-22541488 | None:intergenic | 35.0% | |
| AGAAGACCATCATTTGCAAA+AGG | + | chr6_4:22541470-22541489 | None:intergenic | 35.0% | |
| CAAATGATGGTCTTCTCATA+TGG | - | chr6_4:22541474-22541493 | Msa0982820:intron | 35.0% | |
| GATTCAATGATGCTTGGATT+TGG | + | chr6_4:22541545-22541564 | None:intergenic | 35.0% | |
| TGATCAGATTCAATGATGCT+TGG | + | chr6_4:22541551-22541570 | None:intergenic | 35.0% | |
| TAGTGGTGATTATGTCAATG+AGG | + | chr6_4:22541667-22541686 | None:intergenic | 35.0% | |
| ACATAATCACCACTATAGCT+TGG | - | chr6_4:22541672-22541691 | Msa0982820:intron | 35.0% | |
| CATAATCACCACTATAGCTT+GGG | - | chr6_4:22541673-22541692 | Msa0982820:intron | 35.0% | |
| TTTGCACAATATGCTTATGG+AGG | - | chr6_4:22541725-22541744 | Msa0982820:CDS | 35.0% | |
| CTAGCAATTGTAGGTCTATT+AGG | + | chr6_4:22541758-22541777 | None:intergenic | 35.0% | |
| ACAACTCATTGAACCATCAT+GGG | - | chr6_4:22541943-22541962 | Msa0982820:intron | 35.0% | |
| AAGGTTTAATGGGAGATTGA+AGG | - | chr6_4:22541997-22542016 | Msa0982820:intron | 35.0% | |
| ! | GAGCTAATGAAACCATTTTC+AGG | - | chr6_4:22542097-22542116 | Msa0982820:five_prime_UTR | 35.0% |
| AGAGAATGAGGTGCAATATG+AGG | - | chr6_4:22538935-22538954 | Msa0982820:three_prime_UTR | 40.0% | |
| !! | ACCAGCAGATTTTGGAAATG+TGG | - | chr6_4:22538971-22538990 | Msa0982820:three_prime_UTR | 40.0% |
| !! | CCAGCAGATTTTGGAAATGT+GGG | - | chr6_4:22538972-22538991 | Msa0982820:three_prime_UTR | 40.0% |
| TCCATCTTAGTTGTCGATCA+TGG | - | chr6_4:22539075-22539094 | Msa0982820:CDS | 40.0% | |
| TCCATGATCGACAACTAAGA+TGG | + | chr6_4:22539079-22539098 | None:intergenic | 40.0% | |
| CTTTGTAGGTGTATCATGCT+TGG | + | chr6_4:22539108-22539127 | None:intergenic | 40.0% | |
| TTACCATCACAAACACCAAG+TGG | - | chr6_4:22539308-22539327 | Msa0982820:CDS | 40.0% | |
| !! | AATCCACTTGGTGTTTGTGA+TGG | + | chr6_4:22539314-22539333 | None:intergenic | 40.0% |
| CCTTGGATACGGATATTGTT+TGG | + | chr6_4:22539489-22539508 | None:intergenic | 40.0% | |
| CCAAACAATATCCGTATCCA+AGG | - | chr6_4:22539486-22539505 | Msa0982820:CDS | 40.0% | |
| !! | GGTCGAAAGCATTCTAATAC+AGG | - | chr6_4:22539521-22539540 | Msa0982820:CDS | 40.0% |
| TTTCTATGTTCCTCGAGATG+AGG | - | chr6_4:22539827-22539846 | Msa0982820:intron | 40.0% | |
| GACTTTAATCAACCTGGGAA+TGG | + | chr6_4:22540054-22540073 | None:intergenic | 40.0% | |
| ! | ATGGCCTCTGAGAAGTAAAT+TGG | - | chr6_4:22540442-22540461 | Msa0982820:CDS | 40.0% |
| GCATCCAATTTACTTCTCAG+AGG | + | chr6_4:22540449-22540468 | None:intergenic | 40.0% | |
| TGGTTATACCACAGTTGAAG+AGG | - | chr6_4:22540529-22540548 | Msa0982820:CDS | 40.0% | |
| TCCCTCACTTTGCTTACATA+TGG | + | chr6_4:22540687-22540706 | None:intergenic | 40.0% | |
| TTGTTCTTCCTCACCAAACA+AGG | - | chr6_4:22540741-22540760 | Msa0982820:CDS | 40.0% | |
| CTAGTGAGCTCAATGACTAT+TGG | + | chr6_4:22540777-22540796 | None:intergenic | 40.0% | |
| ! | TGTGGTTTGTCGCCAATAAT+CGG | + | chr6_4:22540801-22540820 | None:intergenic | 40.0% |
| TTATTGGCGACAAACCACAA+TGG | - | chr6_4:22540802-22540821 | Msa0982820:intron | 40.0% | |
| AGATTGGTAGAATCAGAAGC+AGG | + | chr6_4:22540843-22540862 | None:intergenic | 40.0% | |
| ACCATGAACTTATAAGCCAC+TGG | - | chr6_4:22540913-22540932 | Msa0982820:CDS | 40.0% | |
| ACCAGTGGCTTATAAGTTCA+TGG | + | chr6_4:22540917-22540936 | None:intergenic | 40.0% | |
| GATATGAATGTACTCACCAG+TGG | + | chr6_4:22540932-22540951 | None:intergenic | 40.0% | |
| TCATATACTCACCGGAATCA+AGG | + | chr6_4:22540963-22540982 | None:intergenic | 40.0% | |
| GCACTACTTCATATACTCAC+CGG | + | chr6_4:22540971-22540990 | None:intergenic | 40.0% | |
| ! | GGATGCAGTAACTTGTAGAT+TGG | + | chr6_4:22541091-22541110 | None:intergenic | 40.0% |
| ! | TGCAAGGTATATCTGAGATG+TGG | + | chr6_4:22541112-22541131 | None:intergenic | 40.0% |
| ACCTTGCAGATAAATGCACT+TGG | - | chr6_4:22541124-22541143 | Msa0982820:CDS | 40.0% | |
| TCCAAGTGCATTTATCTGCA+AGG | + | chr6_4:22541128-22541147 | None:intergenic | 40.0% | |
| CTGTGGCATATGATAAGCTT+TGG | - | chr6_4:22541224-22541243 | Msa0982820:CDS | 40.0% | |
| !! | GCTTTGGCAATTTGATTTGC+AGG | - | chr6_4:22541240-22541259 | Msa0982820:CDS | 40.0% |
| TACCAAATGATCTTCTCCAC+CGG | - | chr6_4:22541266-22541285 | Msa0982820:CDS | 40.0% | |
| ATACGTATAGACTTTACCGG+TGG | + | chr6_4:22541285-22541304 | None:intergenic | 40.0% | |
| !! | TTCTTTTAGAGGAATGGCTG+TGG | - | chr6_4:22541397-22541416 | Msa0982820:CDS | 40.0% |
| GAAGATCCTAATGCACAACA+TGG | - | chr6_4:22541419-22541438 | Msa0982820:intron | 40.0% | |
| TTTAGGCCATGTTGTGCATT+AGG | + | chr6_4:22541428-22541447 | None:intergenic | 40.0% | |
| ! | GACTACCCTTTTGCAAATGA+TGG | - | chr6_4:22541461-22541480 | Msa0982820:intron | 40.0% |
| TGGACAGAAGTTCGAACAAA+AGG | - | chr6_4:22541587-22541606 | Msa0982820:intron | 40.0% | |
| GAAGTTCGAACAAAAGGTCA+CGG | - | chr6_4:22541593-22541612 | Msa0982820:intron | 40.0% | |
| ACAAATCAGAAGAACCATGG+TGG | - | chr6_4:22541618-22541637 | Msa0982820:intron | 40.0% | |
| AAGACCCTACAAAGGAAGAA+TGG | - | chr6_4:22541795-22541814 | Msa0982820:CDS | 40.0% | |
| AGACCCTACAAAGGAAGAAT+GGG | - | chr6_4:22541796-22541815 | Msa0982820:CDS | 40.0% | |
| TCTCCCATTCTTCCTTTGTA+GGG | + | chr6_4:22541802-22541821 | None:intergenic | 40.0% | |
| TTCTCCCATTCTTCCTTTGT+AGG | + | chr6_4:22541803-22541822 | None:intergenic | 40.0% | |
| ! | CAAACCTGAGCAAACACTTT+TGG | - | chr6_4:22541832-22541851 | Msa0982820:CDS | 40.0% |
| AGGTTGCTTGAATTTGCGAA+GGG | + | chr6_4:22541865-22541884 | None:intergenic | 40.0% | |
| AAGGTTGCTTGAATTTGCGA+AGG | + | chr6_4:22541866-22541885 | None:intergenic | 40.0% | |
| TTCGCAAATTCAAGCAACCT+TGG | - | chr6_4:22541865-22541884 | Msa0982820:CDS | 40.0% | |
| GTTCAAAATGGTCATCACCA+AGG | + | chr6_4:22541885-22541904 | None:intergenic | 40.0% | |
| AGTACTCTTCATCTGGTGAA+TGG | + | chr6_4:22541919-22541938 | None:intergenic | 40.0% | |
| !! | TTCACCAGATGAAGAGTACT+TGG | - | chr6_4:22541919-22541938 | Msa0982820:intron | 40.0% |
| !! | TCACCAGATGAAGAGTACTT+GGG | - | chr6_4:22541920-22541939 | Msa0982820:intron | 40.0% |
| GACAACTCATTGAACCATCA+TGG | - | chr6_4:22541942-22541961 | Msa0982820:intron | 40.0% | |
| GGGAGATTGAAGGAAATTGA+AGG | - | chr6_4:22542007-22542026 | Msa0982820:intron | 40.0% | |
| TTGAAGAATAGGAATGGAGC+TGG | - | chr6_4:22542061-22542080 | Msa0982820:intron | 40.0% | |
| TGAAGAATAGGAATGGAGCT+GGG | - | chr6_4:22542062-22542081 | Msa0982820:intron | 40.0% | |
| !! | ATGAAACCATTTTCAGGACC+TGG | - | chr6_4:22542103-22542122 | Msa0982820:five_prime_UTR | 40.0% |
| CCCACATTTCCAAAATCTGC+TGG | + | chr6_4:22538975-22538994 | None:intergenic | 45.0% | |
| !! | GTCCTTGATGGTTTTCCTGA+TGG | - | chr6_4:22539047-22539066 | Msa0982820:intron | 45.0% |
| GTCCATCAGGAAAACCATCA+AGG | + | chr6_4:22539052-22539071 | None:intergenic | 45.0% | |
| GATCGACAACTAAGATGGAC+AGG | + | chr6_4:22539074-22539093 | None:intergenic | 45.0% | |
| GAACTAAGAGGGAATGGAGA+AGG | - | chr6_4:22539362-22539381 | Msa0982820:CDS | 45.0% | |
| CTCAAAAGACCTGTTCTTGG+TGG | - | chr6_4:22539461-22539480 | Msa0982820:CDS | 45.0% | |
| ! | TGAGGCGTTTGCTGAGATAA+AGG | - | chr6_4:22539845-22539864 | Msa0982820:intron | 45.0% |
| GTCTGTGAGAATTGTGTCCA+AGG | + | chr6_4:22539925-22539944 | None:intergenic | 45.0% | |
| ! | TCAACCTGGGAATGGCTTTT+TGG | + | chr6_4:22540046-22540065 | None:intergenic | 45.0% |
| GTTGGGAACTTCTGAATTGC+AGG | - | chr6_4:22540228-22540247 | Msa0982820:intron | 45.0% | |
| !! | GGAATTTGCTAGGGAGACTT+TGG | - | chr6_4:22540278-22540297 | Msa0982820:intron | 45.0% |
| ! | TCTCTCGTGATAGCTGATTC+TGG | + | chr6_4:22540488-22540507 | None:intergenic | 45.0% |
| GTCATCGAGTCGCAGATAAT+TGG | - | chr6_4:22540509-22540528 | Msa0982820:CDS | 45.0% | |
| GCTTAGTACCTCTTCAACTG+TGG | + | chr6_4:22540540-22540559 | None:intergenic | 45.0% | |
| !! | TCAATGTGCCTTGTTTGGTG+AGG | + | chr6_4:22540752-22540771 | None:intergenic | 45.0% |
| ! | TGGCTTCAATGTGCCTTGTT+TGG | + | chr6_4:22540757-22540776 | None:intergenic | 45.0% |
| GAGCTCACTAGACCGATTAT+TGG | - | chr6_4:22540786-22540805 | Msa0982820:intron | 45.0% | |
| !! | CTACCAATCTTTGGCTTTGG+AGG | - | chr6_4:22540853-22540872 | Msa0982820:intron | 45.0% |
| AAGCCTCCAAAGCCAAAGAT+TGG | + | chr6_4:22540859-22540878 | None:intergenic | 45.0% | |
| TACCGGTGGAGAAGATCATT+TGG | + | chr6_4:22541271-22541290 | None:intergenic | 45.0% | |
| CTGATCAAGAGCTTCAAGCA+TGG | - | chr6_4:22541564-22541583 | Msa0982820:intron | 45.0% | |
| ATCAAGAGCTTCAAGCATGG+TGG | - | chr6_4:22541567-22541586 | Msa0982820:intron | 45.0% | |
| GCGACAAATCAGAAGAACCA+TGG | - | chr6_4:22541615-22541634 | Msa0982820:intron | 45.0% | |
| ! | GTTTTCAGATTTGGCCACCA+TGG | + | chr6_4:22541635-22541654 | None:intergenic | 45.0% |
| AGATGCTACCCAAGCTATAG+TGG | + | chr6_4:22541684-22541703 | None:intergenic | 45.0% | |
| TCCTTTGTAGGGTCTTCTGT+AGG | + | chr6_4:22541791-22541810 | None:intergenic | 45.0% | |
| !! | CACTCCAAAAGTGTTTGCTC+AGG | + | chr6_4:22541839-22541858 | None:intergenic | 45.0% |
| TGTCCCAAGTACTCTTCATC+TGG | + | chr6_4:22541926-22541945 | None:intergenic | 45.0% | |
| TCTGGATTCTCATCCCATGA+TGG | + | chr6_4:22541959-22541978 | None:intergenic | 45.0% | |
| !! | TGGAAATGTGGGCGCTGTTT+TGG | - | chr6_4:22538983-22539002 | Msa0982820:three_prime_UTR | 50.0% |
| CTAAGATGGACAGGTCCATC+AGG | + | chr6_4:22539065-22539084 | None:intergenic | 50.0% | |
| !! | TGTTTGGTGCCACCAAGAAC+AGG | + | chr6_4:22539473-22539492 | None:intergenic | 50.0% |
| GTACGACAACGCCTTGGATA+CGG | + | chr6_4:22539500-22539519 | None:intergenic | 50.0% | |
| !! | TATCCAAGGCGTTGTCGTAC+CGG | - | chr6_4:22539500-22539519 | Msa0982820:CDS | 50.0% |
| TGCTCCAAAAAGCCATTCCC+AGG | - | chr6_4:22540039-22540058 | Msa0982820:CDS | 50.0% | |
| !! | CAGGGGTATCAAAGCGCAAA+AGG | + | chr6_4:22540094-22540113 | None:intergenic | 50.0% |
| TTTGCTAGGGAGACTTTGGC+AGG | - | chr6_4:22540282-22540301 | Msa0982820:intron | 50.0% | |
| TTGCTAGGGAGACTTTGGCA+GGG | - | chr6_4:22540283-22540302 | Msa0982820:intron | 50.0% | |
| ! | CTCGTGATAGCTGATTCTGG+TGG | + | chr6_4:22540485-22540504 | None:intergenic | 50.0% |
| GCCTACAGAAGACCCTACAA+AGG | - | chr6_4:22541787-22541806 | Msa0982820:CDS | 50.0% | |
| GTGACTCCAGGTCCTGAAAA+TGG | + | chr6_4:22542112-22542131 | None:intergenic | 50.0% | |
| !! | TTTTCAGGACCTGGAGTCAC+TGG | - | chr6_4:22542112-22542131 | Msa0982820:five_prime_UTR | 50.0% |
| TCAGCAAACGCCTCATCTCG+AGG | + | chr6_4:22539840-22539859 | None:intergenic | 55.0% | |
| ! | TTTTACTCCTGAGGACGCCG+TGG | + | chr6_4:22539889-22539908 | None:intergenic | 55.0% |
| TGCTAGGGAGACTTTGGCAG+GGG | - | chr6_4:22540284-22540303 | Msa0982820:intron | 55.0% | |
| AGGACCTGGAGTCACTGGAA+AGG | - | chr6_4:22542117-22542136 | Msa0982820:five_prime_UTR | 55.0% | |
| GGACCTGGAGTCACTGGAAA+GGG | - | chr6_4:22542118-22542137 | Msa0982820:five_prime_UTR | 55.0% | |
| ACTCCCTTTCCAGTGACTCC+AGG | + | chr6_4:22542124-22542143 | None:intergenic | 55.0% | |
| AACACAACCACGGCGTCCTC+AGG | - | chr6_4:22539879-22539898 | Msa0982820:intron | 60.0% | |
| CGACCGGTACGACAACGCCT+TGG | + | chr6_4:22539506-22539525 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 22538874 | 22542347 | 22538874 | ID=Msa0982820;Name=Msa0982820 |
| chr6_4 | mRNA | 22538874 | 22542347 | 22538874 | ID=Msa0982820-mRNA-1;Parent=Msa0982820;Name=Msa0982820-mRNA-1;_AED=0.09;_eAED=0.09;_QI=275|1|1|1|0.75|0.66|9|158|697 |
| chr6_4 | exon | 22538874 | 22539026 | 22538874 | ID=Msa0982820-mRNA-1:exon:7205;Parent=Msa0982820-mRNA-1 |
| chr6_4 | exon | 22539051 | 22539815 | 22539051 | ID=Msa0982820-mRNA-1:exon:7204;Parent=Msa0982820-mRNA-1 |
| chr6_4 | exon | 22539934 | 22540200 | 22539934 | ID=Msa0982820-mRNA-1:exon:7203;Parent=Msa0982820-mRNA-1 |
| chr6_4 | exon | 22540287 | 22540588 | 22540287 | ID=Msa0982820-mRNA-1:exon:7202;Parent=Msa0982820-mRNA-1 |
| chr6_4 | exon | 22540671 | 22540781 | 22540671 | ID=Msa0982820-mRNA-1:exon:7201;Parent=Msa0982820-mRNA-1 |
| chr6_4 | exon | 22540886 | 22540971 | 22540886 | ID=Msa0982820-mRNA-1:exon:7200;Parent=Msa0982820-mRNA-1 |
| chr6_4 | exon | 22541096 | 22541422 | 22541096 | ID=Msa0982820-mRNA-1:exon:7199;Parent=Msa0982820-mRNA-1 |
| chr6_4 | exon | 22541679 | 22541919 | 22541679 | ID=Msa0982820-mRNA-1:exon:7198;Parent=Msa0982820-mRNA-1 |
| chr6_4 | exon | 22542073 | 22542347 | 22542073 | ID=Msa0982820-mRNA-1:exon:7197;Parent=Msa0982820-mRNA-1 |
| chr6_4 | five_prime_UTR | 22542073 | 22542347 | 22542073 | ID=Msa0982820-mRNA-1:five_prime_utr;Parent=Msa0982820-mRNA-1 |
| chr6_4 | CDS | 22541679 | 22541919 | 22541679 | ID=Msa0982820-mRNA-1:cds;Parent=Msa0982820-mRNA-1 |
| chr6_4 | CDS | 22541096 | 22541422 | 22541096 | ID=Msa0982820-mRNA-1:cds;Parent=Msa0982820-mRNA-1 |
| chr6_4 | CDS | 22540886 | 22540971 | 22540886 | ID=Msa0982820-mRNA-1:cds;Parent=Msa0982820-mRNA-1 |
| chr6_4 | CDS | 22540671 | 22540781 | 22540671 | ID=Msa0982820-mRNA-1:cds;Parent=Msa0982820-mRNA-1 |
| chr6_4 | CDS | 22540287 | 22540588 | 22540287 | ID=Msa0982820-mRNA-1:cds;Parent=Msa0982820-mRNA-1 |
| chr6_4 | CDS | 22539934 | 22540200 | 22539934 | ID=Msa0982820-mRNA-1:cds;Parent=Msa0982820-mRNA-1 |
| chr6_4 | CDS | 22539056 | 22539815 | 22539056 | ID=Msa0982820-mRNA-1:cds;Parent=Msa0982820-mRNA-1 |
| chr6_4 | three_prime_UTR | 22539051 | 22539055 | 22539051 | ID=Msa0982820-mRNA-1:three_prime_utr;Parent=Msa0982820-mRNA-1 |
| chr6_4 | three_prime_UTR | 22538874 | 22539026 | 22538874 | ID=Msa0982820-mRNA-1:three_prime_utr;Parent=Msa0982820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
