AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1267060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267060 MtrunA17_Chr4g0069811 95.238 336 6 4 1 328 1 334 0.0 644
Msa1267060 MtrunA17_Chr2g0302031 66.450 307 76 7 34 324 8 303 5.93e-136 388
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267060 AT4G33140.1 65.354 254 81 2 76 325 102 352 2.18e-119 348

Find 86 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCCAAACCAATTATTTC+TGG 0.133969 8_2:+72182836 Msa1267060:five_prime_UTR
TTCAATAGTGTTGCTCAAAA+TGG 0.149132 8_2:-72186401 None:intergenic
TCATGTGTACGAGTTCTTTA+AGG 0.194014 8_2:+72184420 Msa1267060:CDS
CACCTACAAATCTCTGATTT+TGG 0.208922 8_2:-72185816 None:intergenic
AATGATATTGGTGGGTTAAA+TGG 0.242698 8_2:+72183265 Msa1267060:CDS
AGTCGGTTCGGTTGTGTTAT+TGG 0.262651 8_2:+72182743 Msa1267060:five_prime_UTR
GAATCAATTCCAGAAATAAT+TGG 0.277717 8_2:-72182845 None:intergenic
AAAATGGAATCTTGCAATAA+TGG 0.283200 8_2:-72182685 None:intergenic
CTCATCAACCAACTCATTCT+TGG 0.309879 8_2:-72186150 None:intergenic
ATGTATGTGATTGGGCAAAA+TGG 0.324940 8_2:-72182701 None:intergenic
AATTCCAGAAATAATTGGTT+TGG 0.329348 8_2:-72182840 None:intergenic
GTTAAGGTTGATAATGATAT+TGG 0.344303 8_2:+72183253 Msa1267060:CDS
GTCTCGGCAGAATGTAATTA+AGG 0.345693 8_2:+72185701 Msa1267060:CDS
TGAATCGCCGTCTGAGCACC+TGG 0.365340 8_2:-72185556 None:intergenic
AACCCTATGGCTTATTCAAT+AGG 0.387771 8_2:+72183037 Msa1267060:CDS
GTTAATAGAAGATTTGAGTT+TGG 0.389742 8_2:+72183121 Msa1267060:CDS
AAGACACCGTATTTCAAGTC+AGG 0.400340 8_2:+72185520 Msa1267060:CDS
TTCTATGGTTTGAGTCGGTT+CGG 0.402265 8_2:+72182731 Msa1267060:five_prime_UTR
AAATGGAATCTTGCAATAAT+GGG 0.404843 8_2:-72182684 None:intergenic
GACCAAAATCAGAGATTTGT+AGG 0.415035 8_2:+72185814 Msa1267060:CDS
ATATCCCATCAAGTGCAAAA+TGG 0.416702 8_2:-72185788 None:intergenic
TTCTGTCCAGTTCTTAACTT+TGG 0.420976 8_2:-72186186 None:intergenic
TCAAATTGAAGTGAATTTGT+CGG 0.422319 8_2:-72182586 None:intergenic
TGAGCAACACTATTGAAGAT+TGG 0.427191 8_2:+72186407 Msa1267060:three_prime_UTR
GGAGCAAGGGAATTCTGTTA+AGG 0.434829 8_2:+72183237 Msa1267060:CDS
TTTGTATGTAGAATTTAGAA+TGG 0.435687 8_2:-72182619 None:intergenic
TTTATGATCAACATGAATGT+AGG 0.437731 8_2:+72186493 Msa1267060:three_prime_UTR
TCAATAGTGTTGCTCAAAAT+GGG 0.438019 8_2:-72186400 None:intergenic
TGGTGACCAAAGTTAAGAAC+TGG 0.453694 8_2:+72186180 Msa1267060:CDS
ATTATGAAAACTCATATCCT+TGG 0.454107 8_2:+72186126 Msa1267060:CDS
TGAATCTCATGGAAAAGTCC+TGG 0.458226 8_2:-72185756 None:intergenic
TGTTGCTGTTGATGTGGATG+AGG 0.476033 8_2:+72183339 Msa1267060:CDS
TTGGAACAAGCTGTTCACTA+TGG 0.484117 8_2:+72186426 Msa1267060:three_prime_UTR
GCAATAGAGTGTGCTGAAGT+TGG 0.485346 8_2:+72186083 Msa1267060:CDS
TTCATTTCTATGGTTTGAGT+CGG 0.494053 8_2:+72182726 Msa1267060:five_prime_UTR
GCCGTCTGAGCACCTGGGAG+AGG 0.498666 8_2:-72185550 None:intergenic
TTCTTAACTTTGGTCACCAA+AGG 0.502489 8_2:-72186176 None:intergenic
TTTGCATAATAACAACCCTA+TGG 0.504044 8_2:+72183024 Msa1267060:CDS
TAACCTATTGAATAAGCCAT+AGG 0.507567 8_2:-72183040 None:intergenic
TTAAGGATCACACTATTGAA+TGG 0.508954 8_2:+72185718 Msa1267060:CDS
GTTGGTTGATGAGCACCCTT+TGG 0.511476 8_2:+72186160 Msa1267060:CDS
GTTGCTGTTGATGTGGATGA+GGG 0.514964 8_2:+72183340 Msa1267060:CDS
CCCTCTCCCAGGTGCTCAGA+CGG 0.520221 8_2:+72185549 Msa1267060:CDS
CCGTCTGAGCACCTGGGAGA+GGG 0.523562 8_2:-72185549 None:intergenic
TTTGCATCTGATTTGGAGCA+AGG 0.525020 8_2:+72183223 Msa1267060:CDS
TCCAGCATTTGATGTAGAGA+AGG 0.527196 8_2:-72186267 None:intergenic
TCCTTGTTCTCATTTGAGCA+AGG 0.527633 8_2:+72183072 Msa1267060:CDS
TAACAGGACTTTAAATGCCA+AGG 0.528929 8_2:+72186034 Msa1267060:intron
GCTTGTTGTTGCTGTTGATG+TGG 0.530835 8_2:+72183333 Msa1267060:CDS
CCCTTCTCTACATCAAATGC+TGG 0.534468 8_2:+72186266 Msa1267060:three_prime_UTR
AACCTATTGAATAAGCCATA+GGG 0.538609 8_2:-72183039 None:intergenic
ACCAAAATCATACGTTACAA+TGG 0.539123 8_2:-72185605 None:intergenic
GGAATCTTGCAATAATGGGT+TGG 0.539485 8_2:-72182680 None:intergenic
TCTTAACTTTGGTCACCAAA+GGG 0.540216 8_2:-72186175 None:intergenic
ATTATCATCAATAAGAACCT+TGG 0.545700 8_2:-72186051 None:intergenic
TGAATCCCTGACTTGAAATA+CGG 0.546358 8_2:-72185526 None:intergenic
TTTATCATATGCTGAATGAA+TGG 0.548935 8_2:+72182495 Msa1267060:five_prime_UTR
GGTTACCAAAGTGAATCTCA+TGG 0.554939 8_2:-72185767 None:intergenic
TGGAACTGTTCACGTGATGA+AGG 0.557011 8_2:+72185111 Msa1267060:CDS
TTGCATCTGATTTGGAGCAA+GGG 0.562036 8_2:+72183224 Msa1267060:CDS
AGACACCGTATTTCAAGTCA+GGG 0.563775 8_2:+72185521 Msa1267060:CDS
TCAGGGATTCACCCTCTCCC+AGG 0.563877 8_2:+72185538 Msa1267060:CDS
ACCAACTCATTCTTGGACCA+AGG 0.564088 8_2:-72186143 None:intergenic
GAATCTCATGGAAAAGTCCT+GGG 0.569077 8_2:-72185755 None:intergenic
CCAGCATTTGATGTAGAGAA+GGG 0.575343 8_2:-72186266 None:intergenic
AGGTTGATAATGATATTGGT+GGG 0.577068 8_2:+72183257 Msa1267060:CDS
AAGGTTGATAATGATATTGG+TGG 0.579097 8_2:+72183256 Msa1267060:CDS
AGTTAAGAACTGGACAGAAG+TGG 0.584067 8_2:+72186190 Msa1267060:CDS
TGGATAGAGAAGAATTTCCC+AGG 0.586791 8_2:+72185738 Msa1267060:CDS
AATCATACGTTACAATGGAT+AGG 0.596490 8_2:-72185600 None:intergenic
TGAAGACGAAAGGAGGAAAG+TGG 0.611584 8_2:-72182400 None:intergenic
GAACAAGCTGTTCACTATGG+TGG 0.620858 8_2:+72186429 Msa1267060:three_prime_UTR
CTAGTGCTAGTAATAGCAGT+AGG 0.623766 8_2:+72183167 Msa1267060:CDS
CAAGAAGATAACTATGCTAG+AGG 0.628267 8_2:+72186352 Msa1267060:three_prime_UTR
ACCTTGCTCAAATGAGAACA+AGG 0.632511 8_2:-72183073 None:intergenic
TCCTTGGTCCAAGAATGAGT+TGG 0.633229 8_2:+72186142 Msa1267060:CDS
GATCAACATGAATGTAGGAG+TGG 0.636662 8_2:+72186498 Msa1267060:three_prime_UTR
AGACTGCAAATCATCAAAAG+CGG 0.643036 8_2:-72182807 None:intergenic
GAATCGCCGTCTGAGCACCT+GGG 0.644858 8_2:-72185555 None:intergenic
AGAATAGTGAAAATCTAGCA+CGG 0.647149 8_2:+72182984 Msa1267060:CDS
TTCTTATTGATGATAATCCG+CGG 0.647289 8_2:+72186057 Msa1267060:CDS
AAACGTTGATCCCGAAAACG+AGG 0.653630 8_2:-72183301 None:intergenic
AGTATTAGGAAATTTCGTGT+CGG 0.674898 8_2:+72184342 Msa1267060:intron
AGAGCTAATGCAAGGCCTCG+CGG 0.678484 8_2:+72183199 Msa1267060:CDS
GCACACTCTATTGCATACCG+CGG 0.678841 8_2:-72186074 None:intergenic
AAATCAGATGCAAAACCGCG+AGG 0.732365 8_2:-72183214 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTTTAAAATAGAATAA+AGG + chr8_2:72183942-72183961 Msa1267060:intron 10.0%
!!! GATAATTTTGAAATGAAAAA+AGG - chr8_2:72182902-72182921 None:intergenic 15.0%
!!! TATTTTATAATAGCTTATCA+TGG + chr8_2:72183470-72183489 Msa1267060:intron 15.0%
!!! TTTCACTAATTTTATTCTTT+CGG + chr8_2:72185430-72185449 Msa1267060:intron 15.0%
!! AACATATAATAAATGTGATT+CGG - chr8_2:72185678-72185697 None:intergenic 15.0%
!! TTTGTATGTAGAATTTAGAA+TGG - chr8_2:72182622-72182641 None:intergenic 20.0%
!! AATGAAAAATGTATGTGATT+GGG - chr8_2:72182712-72182731 None:intergenic 20.0%
!! AAATGAAAAATGTATGTGAT+TGG - chr8_2:72182713-72182732 None:intergenic 20.0%
!!! ACATACATTTTTCATTTCTA+TGG + chr8_2:72182716-72182735 Msa1267060:five_prime_UTR 20.0%
!!! AAATCTGATTTTGAGAAAAA+GGG - chr8_2:72182775-72182794 None:intergenic 20.0%
!!! TATGCTAATGTTTTTGATTT+TGG + chr8_2:72183097-72183116 Msa1267060:CDS 20.0%
!!! ATGCTAATGTTTTTGATTTT+GGG + chr8_2:72183098-72183117 Msa1267060:CDS 20.0%
!! GGAATCAATCTTTATATTAA+TGG + chr8_2:72183540-72183559 Msa1267060:intron 20.0%
!! ATCAATCTTTATATTAATGG+AGG + chr8_2:72183543-72183562 Msa1267060:intron 20.0%
!!! AAGAAAAAATAACTGATTCA+AGG - chr8_2:72184228-72184247 None:intergenic 20.0%
!!! TCAATTTTTTAAGCAGTATT+AGG + chr8_2:72184328-72184347 Msa1267060:intron 20.0%
!! CAATATTAAACAAATGTCAT+CGG + chr8_2:72184502-72184521 Msa1267060:intron 20.0%
!! TCTATATTAATACATAAGAC+TGG - chr8_2:72184577-72184596 None:intergenic 20.0%
!! ATATCTGTAACAGAAATTAA+GGG - chr8_2:72185092-72185111 None:intergenic 20.0%
!! GAAAAATTCATTAGAGAATT+GGG - chr8_2:72185347-72185366 None:intergenic 20.0%
!!! TTTTATCAAGATTTTTGTGT+AGG + chr8_2:72185403-72185422 Msa1267060:intron 20.0%
!! ATCACATTTATTATATGTTC+AGG + chr8_2:72185679-72185698 Msa1267060:intron 20.0%
!! GATAAAAAATAGTACTTGAA+CGG - chr8_2:72185984-72186003 None:intergenic 20.0%
!!! AGTTTTCATAATCAAAAAGT+AGG - chr8_2:72186118-72186137 None:intergenic 20.0%
!!! GTGATTTTATTACTATAACT+AGG + chr8_2:72186460-72186479 Msa1267060:three_prime_UTR 20.0%
!!! ATATTTTTGATGAAGACGAA+AGG - chr8_2:72182413-72182432 None:intergenic 25.0%
! TTTATCATATGCTGAATGAA+TGG + chr8_2:72182495-72182514 Msa1267060:five_prime_UTR 25.0%
! TCAAATTGAAGTGAATTTGT+CGG - chr8_2:72182589-72182608 None:intergenic 25.0%
! AAATGGAATCTTGCAATAAT+GGG - chr8_2:72182687-72182706 None:intergenic 25.0%
! AAAATGGAATCTTGCAATAA+TGG - chr8_2:72182688-72182707 None:intergenic 25.0%
!!! AATCTGATTTTGAGAAAAAG+GGG - chr8_2:72182774-72182793 None:intergenic 25.0%
!!! CAAATCTGATTTTGAGAAAA+AGG - chr8_2:72182776-72182795 None:intergenic 25.0%
! AATTCCAGAAATAATTGGTT+TGG - chr8_2:72182843-72182862 None:intergenic 25.0%
! GAATCAATTCCAGAAATAAT+TGG - chr8_2:72182848-72182867 None:intergenic 25.0%
!!! TGCTAATGTTTTTGATTTTG+GGG + chr8_2:72183099-72183118 Msa1267060:CDS 25.0%
!! GTTAATAGAAGATTTGAGTT+TGG + chr8_2:72183121-72183140 Msa1267060:CDS 25.0%
!!! GTTAAGGTTGATAATGATAT+TGG + chr8_2:72183253-72183272 Msa1267060:CDS 25.0%
!!! TGTGTGTTTTTTAATATGCA+AGG + chr8_2:72183604-72183623 Msa1267060:intron 25.0%
! AGAACTTCACATTTAACAAA+AGG - chr8_2:72183851-72183870 None:intergenic 25.0%
!!! TTCTTTAAGGTATCTTTTGT+TGG + chr8_2:72184433-72184452 Msa1267060:intron 25.0%
! CGATGACATTTGTTTAATAT+TGG - chr8_2:72184504-72184523 None:intergenic 25.0%
! ATAAGCCTAATTTGAATAGA+GGG - chr8_2:72184621-72184640 None:intergenic 25.0%
! AATAAGCCTAATTTGAATAG+AGG - chr8_2:72184622-72184641 None:intergenic 25.0%
!! TTAATTTTCTTTCGTGATAG+AGG + chr8_2:72184651-72184670 Msa1267060:intron 25.0%
! TATTAGAGAAACCATTAGAA+AGG + chr8_2:72184695-72184714 Msa1267060:intron 25.0%
! GAAAGATTTAGACAGAATTT+GGG - chr8_2:72184911-72184930 None:intergenic 25.0%
!!! AGAACTACTTTTTCTATGAA+TGG + chr8_2:72184943-72184962 Msa1267060:intron 25.0%
!!! GAACTACTTTTTCTATGAAT+GGG + chr8_2:72184944-72184963 Msa1267060:intron 25.0%
! CAAATTTACAACAAAAGCAA+TGG - chr8_2:72185039-72185058 None:intergenic 25.0%
! CATATCTGTAACAGAAATTA+AGG - chr8_2:72185093-72185112 None:intergenic 25.0%
! CTTAATTTCTGTTACAGATA+TGG + chr8_2:72185091-72185110 Msa1267060:intron 25.0%
!!! ATAGCAAAATTGTTCTAAAG+AGG - chr8_2:72185148-72185167 None:intergenic 25.0%
! CCTTTGAACATAGATTTATA+GGG - chr8_2:72185286-72185305 None:intergenic 25.0%
! CCTATAAATCTATGTTCAAA+GGG + chr8_2:72185284-72185303 Msa1267060:intron 25.0%
! GGAAAAATTCATTAGAGAAT+TGG - chr8_2:72185348-72185367 None:intergenic 25.0%
! TTTCCTAATTCTTGTTCAAA+AGG + chr8_2:72185363-72185382 Msa1267060:intron 25.0%
! TTCCTAATTCTTGTTCAAAA+GGG + chr8_2:72185364-72185383 Msa1267060:intron 25.0%
! TTTATTATATGTTCAGGTCT+CGG + chr8_2:72185685-72185704 Msa1267060:intron 25.0%
!! TGATATGACTTGATTTTCTT+TGG + chr8_2:72185870-72185889 Msa1267060:intron 25.0%
! ATTATCATCAATAAGAACCT+TGG - chr8_2:72186054-72186073 None:intergenic 25.0%
! ATTATGAAAACTCATATCCT+TGG + chr8_2:72186126-72186145 Msa1267060:CDS 25.0%
! TTTATGATCAACATGAATGT+AGG + chr8_2:72186493-72186512 Msa1267060:three_prime_UTR 25.0%
!!! TCTCGTCTTTTTTCATTCTT+TGG + chr8_2:72182655-72182674 Msa1267060:five_prime_UTR 30.0%
TTCATTTCTATGGTTTGAGT+CGG + chr8_2:72182726-72182745 Msa1267060:five_prime_UTR 30.0%
!! ATCTGATTTTGAGAAAAAGG+GGG - chr8_2:72182773-72182792 None:intergenic 30.0%
! ATCATCAAAAGCGGTTTTTA+GGG - chr8_2:72182801-72182820 None:intergenic 30.0%
! AATCATCAAAAGCGGTTTTT+AGG - chr8_2:72182802-72182821 None:intergenic 30.0%
CAATCCAAACCAATTATTTC+TGG + chr8_2:72182836-72182855 Msa1267060:five_prime_UTR 30.0%
AGAATAGTGAAAATCTAGCA+CGG + chr8_2:72182984-72183003 Msa1267060:CDS 30.0%
TTTGCATAATAACAACCCTA+TGG + chr8_2:72183024-72183043 Msa1267060:CDS 30.0%
AACCTATTGAATAAGCCATA+GGG - chr8_2:72183042-72183061 None:intergenic 30.0%
TAACCTATTGAATAAGCCAT+AGG - chr8_2:72183043-72183062 None:intergenic 30.0%
! TTTTTGTAAGAGCTAATGCA+AGG + chr8_2:72183191-72183210 Msa1267060:CDS 30.0%
!! AAGGTTGATAATGATATTGG+TGG + chr8_2:72183256-72183275 Msa1267060:CDS 30.0%
!! AGGTTGATAATGATATTGGT+GGG + chr8_2:72183257-72183276 Msa1267060:CDS 30.0%
!! AATGATATTGGTGGGTTAAA+TGG + chr8_2:72183265-72183284 Msa1267060:CDS 30.0%
TAATATTGTTGCTCTCTGAT+AGG + chr8_2:72183516-72183535 Msa1267060:intron 30.0%
TGAACATATGCATGAAGATT+TGG - chr8_2:72183739-72183758 None:intergenic 30.0%
TACACATTACCAAGAATTTC+TGG - chr8_2:72183881-72183900 None:intergenic 30.0%
AGTATTAGGAAATTTCGTGT+CGG + chr8_2:72184342-72184361 Msa1267060:intron 30.0%
ATACATAAGACTGGAGAATA+GGG - chr8_2:72184568-72184587 None:intergenic 30.0%
AATACATAAGACTGGAGAAT+AGG - chr8_2:72184569-72184588 None:intergenic 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG - chr8_2:72184687-72184706 None:intergenic 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr8_2:72184704-72184723 Msa1267060:intron 30.0%
GTTCTGTCATAAACCAAATT+TGG - chr8_2:72184744-72184763 None:intergenic 30.0%
!!! CTTGTTTGTTGTTGTTTTGT+TGG + chr8_2:72184814-72184833 Msa1267060:intron 30.0%
GGAAAGATTTAGACAGAATT+TGG - chr8_2:72184912-72184931 None:intergenic 30.0%
ATCATAATTCAGTTCCTTGT+TGG + chr8_2:72184978-72184997 Msa1267060:intron 30.0%
TTTGTGCATATGCTTGAATT+TGG + chr8_2:72185055-72185074 Msa1267060:intron 30.0%
! CAACAATTTTCTGTACACAA+TGG - chr8_2:72185172-72185191 None:intergenic 30.0%
CATTGTGTACAGAAAATTGT+TGG + chr8_2:72185170-72185189 Msa1267060:intron 30.0%
GAACTTGAACAAATCAAACA+AGG - chr8_2:72185209-72185228 None:intergenic 30.0%
CCCTATAAATCTATGTTCAA+AGG + chr8_2:72185283-72185302 Msa1267060:intron 30.0%
CCCTTTGAACATAGATTTAT+AGG - chr8_2:72185287-72185306 None:intergenic 30.0%
!!! AAGTTTTGTTTTCACGATTG+AGG + chr8_2:72185317-72185336 Msa1267060:intron 30.0%
TTATTCTTTCGGATGACTAA+TGG + chr8_2:72185441-72185460 Msa1267060:intron 30.0%
AATCATACGTTACAATGGAT+AGG - chr8_2:72185603-72185622 None:intergenic 30.0%
! TCCATTGTAACGTATGATTT+TGG + chr8_2:72185604-72185623 Msa1267060:intron 30.0%
ACCAAAATCATACGTTACAA+TGG - chr8_2:72185608-72185627 None:intergenic 30.0%
!! GTAACGTATGATTTTGGTAT+TGG + chr8_2:72185610-72185629 Msa1267060:intron 30.0%
TTAAGGATCACACTATTGAA+TGG + chr8_2:72185718-72185737 Msa1267060:CDS 30.0%
ATAGAGAAAAACAGATGAAG+AGG - chr8_2:72185851-72185870 None:intergenic 30.0%
TGATGTGAATCTAAACAGTA+GGG - chr8_2:72185922-72185941 None:intergenic 30.0%
! TTCTTATTGATGATAATCCG+CGG + chr8_2:72186057-72186076 Msa1267060:CDS 30.0%
! TCAATAGTGTTGCTCAAAAT+GGG - chr8_2:72186403-72186422 None:intergenic 30.0%
! TTCAATAGTGTTGCTCAAAA+TGG - chr8_2:72186404-72186423 None:intergenic 30.0%
! AGAAGAGAACATAGATTTTG+TGG - chr8_2:72186561-72186580 None:intergenic 30.0%
!! TTTTGATGCTGTTTGTGTTT+TGG + chr8_2:72186592-72186611 Msa1267060:three_prime_UTR 30.0%
! TTTTTGATGAAGACGAAAGG+AGG - chr8_2:72182410-72182429 None:intergenic 35.0%
ATGTATGTGATTGGGCAAAA+TGG - chr8_2:72182704-72182723 None:intergenic 35.0%
!! TCATCAAAAGCGGTTTTTAG+GGG - chr8_2:72182800-72182819 None:intergenic 35.0%
AGACTGCAAATCATCAAAAG+CGG - chr8_2:72182810-72182829 None:intergenic 35.0%
AACCCTATGGCTTATTCAAT+AGG + chr8_2:72183037-72183056 Msa1267060:CDS 35.0%
GAGTTTGGTAGAAAAACTTG+TGG + chr8_2:72183136-72183155 Msa1267060:CDS 35.0%
TGAATAATGAAGACCTTGTG+TGG + chr8_2:72183418-72183437 Msa1267060:intron 35.0%
ATATTTGCCGAAATCTTAGC+TGG + chr8_2:72183762-72183781 Msa1267060:intron 35.0%
ACATTGACCAGCTAAGATTT+CGG - chr8_2:72183772-72183791 None:intergenic 35.0%
! ATTCTTTTCAGCATGCAACT+AGG + chr8_2:72183804-72183823 Msa1267060:intron 35.0%
CTGAAGATACCAGAAATTCT+TGG + chr8_2:72183869-72183888 Msa1267060:intron 35.0%
!! TGTTTTGAGTGACTGATACA+TGG + chr8_2:72183974-72183993 Msa1267060:intron 35.0%
AATTGTGAATTGTCAACTCC+AGG + chr8_2:72184158-72184177 Msa1267060:intron 35.0%
CACACATCAGAGAATATATG+TGG - chr8_2:72184296-72184315 None:intergenic 35.0%
TCATGTGTACGAGTTCTTTA+AGG + chr8_2:72184420-72184439 Msa1267060:CDS 35.0%
TAAACAAATGTCATCGGAAC+AGG + chr8_2:72184508-72184527 Msa1267060:intron 35.0%
TACATAAGACTGGAGAATAG+GGG - chr8_2:72184567-72184586 None:intergenic 35.0%
CTTTGCCCTCTATTCAAATT+AGG + chr8_2:72184613-72184632 Msa1267060:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr8_2:72184709-72184728 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATT+TGG + chr8_2:72184728-72184747 Msa1267060:intron 35.0%
TGGTTTATGACAGAACACTA+TGG + chr8_2:72184748-72184767 Msa1267060:intron 35.0%
!!! GTTGTTGTTTTGTTGGTCAA+TGG + chr8_2:72184821-72184840 Msa1267060:intron 35.0%
GACTAAAAAATTCACGTGTC+AGG - chr8_2:72184862-72184881 None:intergenic 35.0%
!! AAGTCTCTCTCTTTGAAATC+TGG + chr8_2:72185237-72185256 Msa1267060:intron 35.0%
! GACCCTTTTGAACAAGAATT+AGG - chr8_2:72185369-72185388 None:intergenic 35.0%
! TGAATCCCTGACTTGAAATA+CGG - chr8_2:72185529-72185548 None:intergenic 35.0%
GGACTTTCATTAACCTTAAG+AGG + chr8_2:72185631-72185650 Msa1267060:intron 35.0%
AACCTTAAGAGGAATCTTGT+CGG + chr8_2:72185642-72185661 Msa1267060:intron 35.0%
! CTTTTCCATGAGATTCACTT+TGG + chr8_2:72185762-72185781 Msa1267060:CDS 35.0%
! GTAACCATTTTGCACTTGAT+GGG + chr8_2:72185784-72185803 Msa1267060:CDS 35.0%
ATATCCCATCAAGTGCAAAA+TGG - chr8_2:72185791-72185810 None:intergenic 35.0%
GACCAAAATCAGAGATTTGT+AGG + chr8_2:72185814-72185833 Msa1267060:CDS 35.0%
! CACCTACAAATCTCTGATTT+TGG - chr8_2:72185819-72185838 None:intergenic 35.0%
AAAACAGATGAAGAGGATCA+AGG - chr8_2:72185844-72185863 None:intergenic 35.0%
GTGATGTGAATCTAAACAGT+AGG - chr8_2:72185923-72185942 None:intergenic 35.0%
GGAAGAAAAACAGTAGGAAA+AGG - chr8_2:72185948-72185967 None:intergenic 35.0%
!! GTTCTAGGAAGAAAAACAGT+AGG - chr8_2:72185954-72185973 None:intergenic 35.0%
!! TTGAACGGATTAAGAGTTCT+AGG - chr8_2:72185969-72185988 None:intergenic 35.0%
!! ACTTGCTGTTTCTCATTAAC+AGG + chr8_2:72186018-72186037 Msa1267060:intron 35.0%
TAACAGGACTTTAAATGCCA+AGG + chr8_2:72186034-72186053 Msa1267060:intron 35.0%
TCTTAACTTTGGTCACCAAA+GGG - chr8_2:72186178-72186197 None:intergenic 35.0%
TTCTTAACTTTGGTCACCAA+AGG - chr8_2:72186179-72186198 None:intergenic 35.0%
TTCTGTCCAGTTCTTAACTT+TGG - chr8_2:72186189-72186208 None:intergenic 35.0%
CAAGAAGATAACTATGCTAG+AGG + chr8_2:72186352-72186371 Msa1267060:three_prime_UTR 35.0%
TGAGCAACACTATTGAAGAT+TGG + chr8_2:72186407-72186426 Msa1267060:three_prime_UTR 35.0%
!! GGAATCTTGCAATAATGGGT+TGG - chr8_2:72182683-72182702 None:intergenic 40.0%
TTCTATGGTTTGAGTCGGTT+CGG + chr8_2:72182731-72182750 Msa1267060:five_prime_UTR 40.0%
TCCTTGTTCTCATTTGAGCA+AGG + chr8_2:72183072-72183091 Msa1267060:CDS 40.0%
ACCTTGCTCAAATGAGAACA+AGG - chr8_2:72183076-72183095 None:intergenic 40.0%
CTAGTGCTAGTAATAGCAGT+AGG + chr8_2:72183167-72183186 Msa1267060:CDS 40.0%
!! TTTGCATCTGATTTGGAGCA+AGG + chr8_2:72183223-72183242 Msa1267060:CDS 40.0%
!! TTGCATCTGATTTGGAGCAA+GGG + chr8_2:72183224-72183243 Msa1267060:CDS 40.0%
TACAGTCAAGATTCCACACA+AGG - chr8_2:72183434-72183453 None:intergenic 40.0%
TATTGTTGCTCTCTGATAGG+AGG + chr8_2:72183519-72183538 Msa1267060:intron 40.0%
!! TCTTGGTAATGTGTAGTGAC+TGG + chr8_2:72183886-72183905 Msa1267060:intron 40.0%
TTGAAACGATGTCTAGTGAC+TGG + chr8_2:72183919-72183938 Msa1267060:intron 40.0%
ATCAAAGATTCATGCACACC+TGG - chr8_2:72184179-72184198 None:intergenic 40.0%
ACATAAGACTGGAGAATAGG+GGG - chr8_2:72184566-72184585 None:intergenic 40.0%
TTCTTTCGTGATAGAGGTAG+AGG + chr8_2:72184657-72184676 Msa1267060:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr8_2:72184716-72184735 Msa1267060:intron 40.0%
CGATCGATGTTCAACAGATA+TGG - chr8_2:72184884-72184903 None:intergenic 40.0%
TATCTGTTGAACATCGATCG+CGG + chr8_2:72184884-72184903 Msa1267060:intron 40.0%
AAGTAGTTCTCTTCAGCAAG+AGG - chr8_2:72184933-72184952 None:intergenic 40.0%
!! TTCAGTTCCTTGTTGGCTTT+AGG + chr8_2:72184985-72185004 Msa1267060:intron 40.0%
AGATACACCTAAAGCCAACA+AGG - chr8_2:72184995-72185014 None:intergenic 40.0%
!! TTGTTGGCTTTAGGTGTATC+TGG + chr8_2:72184994-72185013 Msa1267060:intron 40.0%
! ACAGAAATTAAGGGTGCATC+AGG - chr8_2:72185083-72185102 None:intergenic 40.0%
! AAGACACCGTATTTCAAGTC+AGG + chr8_2:72185520-72185539 Msa1267060:CDS 40.0%
! AGACACCGTATTTCAAGTCA+GGG + chr8_2:72185521-72185540 Msa1267060:CDS 40.0%
ACCTTAAGAGGAATCTTGTC+GGG + chr8_2:72185643-72185662 Msa1267060:intron 40.0%
GTCTCGGCAGAATGTAATTA+AGG + chr8_2:72185701-72185720 Msa1267060:CDS 40.0%
TGGATAGAGAAGAATTTCCC+AGG + chr8_2:72185738-72185757 Msa1267060:CDS 40.0%
GAATCTCATGGAAAAGTCCT+GGG - chr8_2:72185758-72185777 None:intergenic 40.0%
TGAATCTCATGGAAAAGTCC+TGG - chr8_2:72185759-72185778 None:intergenic 40.0%
GGTTACCAAAGTGAATCTCA+TGG - chr8_2:72185770-72185789 None:intergenic 40.0%
! GGTAACCATTTTGCACTTGA+TGG + chr8_2:72185783-72185802 Msa1267060:CDS 40.0%
AATCTAAACAGTAGGGAAGG+AGG - chr8_2:72185915-72185934 None:intergenic 40.0%
GTGAATCTAAACAGTAGGGA+AGG - chr8_2:72185918-72185937 None:intergenic 40.0%
CTCATCAACCAACTCATTCT+TGG - chr8_2:72186153-72186172 None:intergenic 40.0%
TGGTGACCAAAGTTAAGAAC+TGG + chr8_2:72186180-72186199 Msa1267060:CDS 40.0%
AGTTAAGAACTGGACAGAAG+TGG + chr8_2:72186190-72186209 Msa1267060:CDS 40.0%
CCAGCATTTGATGTAGAGAA+GGG - chr8_2:72186269-72186288 None:intergenic 40.0%
TCCAGCATTTGATGTAGAGA+AGG - chr8_2:72186270-72186289 None:intergenic 40.0%
TTGGAACAAGCTGTTCACTA+TGG + chr8_2:72186426-72186445 Msa1267060:three_prime_UTR 40.0%
GATCAACATGAATGTAGGAG+TGG + chr8_2:72186498-72186517 Msa1267060:three_prime_UTR 40.0%
TGAAGACGAAAGGAGGAAAG+TGG - chr8_2:72182403-72182422 None:intergenic 45.0%
!! AGTCGGTTCGGTTGTGTTAT+TGG + chr8_2:72182743-72182762 Msa1267060:five_prime_UTR 45.0%
AAATCAGATGCAAAACCGCG+AGG - chr8_2:72183217-72183236 None:intergenic 45.0%
! TCGCGGTTTTGCATCTGATT+TGG + chr8_2:72183216-72183235 Msa1267060:CDS 45.0%
GGAGCAAGGGAATTCTGTTA+AGG + chr8_2:72183237-72183256 Msa1267060:CDS 45.0%
AAACGTTGATCCCGAAAACG+AGG - chr8_2:72183304-72183323 None:intergenic 45.0%
!! GCTTGTTGTTGCTGTTGATG+TGG + chr8_2:72183333-72183352 Msa1267060:CDS 45.0%
! TGTTGCTGTTGATGTGGATG+AGG + chr8_2:72183339-72183358 Msa1267060:CDS 45.0%
! GTTGCTGTTGATGTGGATGA+GGG + chr8_2:72183340-72183359 Msa1267060:CDS 45.0%
TCTTAGCTGGTCAATGTGTG+AGG + chr8_2:72183775-72183794 Msa1267060:intron 45.0%
CCAGCTATCATCAAACAGAG+GGG - chr8_2:72184013-72184032 None:intergenic 45.0%
GCCAGCTATCATCAAACAGA+GGG - chr8_2:72184014-72184033 None:intergenic 45.0%
AGCCAGCTATCATCAAACAG+AGG - chr8_2:72184015-72184034 None:intergenic 45.0%
TGAGACATCGCACTGAAAAC+AGG - chr8_2:72184205-72184224 None:intergenic 45.0%
ATAGAGGTAGAGGAAGACCT+AGG + chr8_2:72184667-72184686 Msa1267060:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr8_2:72184797-72184816 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr8_2:72184798-72184817 None:intergenic 45.0%
! ACAAGCCTTATCCCACTAAG+TGG - chr8_2:72184799-72184818 None:intergenic 45.0%
TGGAACTGTTCACGTGATGA+AGG + chr8_2:72185111-72185130 Msa1267060:CDS 45.0%
! CTTTCGGATGACTAATGGAC+TGG + chr8_2:72185446-72185465 Msa1267060:intron 45.0%
TCCCGACAAGATTCCTCTTA+AGG - chr8_2:72185647-72185666 None:intergenic 45.0%
GCAATAGAGTGTGCTGAAGT+TGG + chr8_2:72186083-72186102 Msa1267060:CDS 45.0%
TCCTTGGTCCAAGAATGAGT+TGG + chr8_2:72186142-72186161 Msa1267060:CDS 45.0%
ACCAACTCATTCTTGGACCA+AGG - chr8_2:72186146-72186165 None:intergenic 45.0%
CCCTTCTCTACATCAAATGC+TGG + chr8_2:72186266-72186285 Msa1267060:three_prime_UTR 45.0%
GAACAAGCTGTTCACTATGG+TGG + chr8_2:72186429-72186448 Msa1267060:three_prime_UTR 45.0%
! GTTCTGCTACGCCTCGTTTT+CGG + chr8_2:72183290-72183309 Msa1267060:CDS 50.0%
! TTCTGCTACGCCTCGTTTTC+GGG + chr8_2:72183291-72183310 Msa1267060:CDS 50.0%
AGCTTATCATGGTGCTCGCA+TGG + chr8_2:72183481-72183500 Msa1267060:intron 50.0%
TAGCTGGTCAATGTGTGAGG+TGG + chr8_2:72183778-72183797 Msa1267060:intron 50.0%
! CCCCTCTGTTTGATGATAGC+TGG + chr8_2:72184010-72184029 Msa1267060:intron 50.0%
CTGGCTGCAATATTCTTGCC+TGG + chr8_2:72184029-72184048 Msa1267060:intron 50.0%
TTTCCAGCATGATCTGAGCC+AGG - chr8_2:72184050-72184069 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr8_2:72184793-72184812 None:intergenic 50.0%
!! CGGATGACTAATGGACTGGT+TGG + chr8_2:72185450-72185469 Msa1267060:intron 50.0%
GCACACTCTATTGCATACCG+CGG - chr8_2:72186077-72186096 None:intergenic 50.0%
!! GTTGGTTGATGAGCACCCTT+TGG + chr8_2:72186160-72186179 Msa1267060:CDS 50.0%
AGAGCTAATGCAAGGCCTCG+CGG + chr8_2:72183199-72183218 Msa1267060:CDS 55.0%
TTGCCTGGCTCAGATCATGC+TGG + chr8_2:72184044-72184063 Msa1267060:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr8_2:72184785-72184804 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr8_2:72184784-72184803 Msa1267060:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr8_2:72184785-72184804 Msa1267060:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr8_2:72184791-72184810 Msa1267060:intron 55.0%
TCAGGGATTCACCCTCTCCC+AGG + chr8_2:72185538-72185557 Msa1267060:CDS 60.0%
GAATCGCCGTCTGAGCACCT+GGG - chr8_2:72185558-72185577 None:intergenic 60.0%
TGAATCGCCGTCTGAGCACC+TGG - chr8_2:72185559-72185578 None:intergenic 60.0%
CCGTCTGAGCACCTGGGAGA+GGG - chr8_2:72185552-72185571 None:intergenic 65.0%
CCCTCTCCCAGGTGCTCAGA+CGG + chr8_2:72185549-72185568 Msa1267060:CDS 65.0%
GCCGTCTGAGCACCTGGGAG+AGG - chr8_2:72185553-72185572 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 72182390 72186684 72182390 ID=Msa1267060;Name=Msa1267060
chr8_2 mRNA 72182390 72186684 72182390 ID=Msa1267060-mRNA-1;Parent=Msa1267060;Name=Msa1267060-mRNA-1;_AED=0.26;_eAED=0.26;_QI=581|1|1|1|1|1|6|428|328
chr8_2 exon 72182390 72183361 72182390 ID=Msa1267060-mRNA-1:exon:24316;Parent=Msa1267060-mRNA-1
chr8_2 exon 72184344 72184441 72184344 ID=Msa1267060-mRNA-1:exon:24317;Parent=Msa1267060-mRNA-1
chr8_2 exon 72185108 72185132 72185108 ID=Msa1267060-mRNA-1:exon:24318;Parent=Msa1267060-mRNA-1
chr8_2 exon 72185494 72185614 72185494 ID=Msa1267060-mRNA-1:exon:24319;Parent=Msa1267060-mRNA-1
chr8_2 exon 72185701 72185835 72185701 ID=Msa1267060-mRNA-1:exon:24320;Parent=Msa1267060-mRNA-1
chr8_2 exon 72186040 72186684 72186040 ID=Msa1267060-mRNA-1:exon:24321;Parent=Msa1267060-mRNA-1
chr8_2 five_prime_UTR 72182390 72182970 72182390 ID=Msa1267060-mRNA-1:five_prime_utr;Parent=Msa1267060-mRNA-1
chr8_2 CDS 72182971 72183361 72182971 ID=Msa1267060-mRNA-1:cds;Parent=Msa1267060-mRNA-1
chr8_2 CDS 72184344 72184441 72184344 ID=Msa1267060-mRNA-1:cds;Parent=Msa1267060-mRNA-1
chr8_2 CDS 72185108 72185132 72185108 ID=Msa1267060-mRNA-1:cds;Parent=Msa1267060-mRNA-1
chr8_2 CDS 72185494 72185614 72185494 ID=Msa1267060-mRNA-1:cds;Parent=Msa1267060-mRNA-1
chr8_2 CDS 72185701 72185835 72185701 ID=Msa1267060-mRNA-1:cds;Parent=Msa1267060-mRNA-1
chr8_2 CDS 72186040 72186256 72186040 ID=Msa1267060-mRNA-1:cds;Parent=Msa1267060-mRNA-1
chr8_2 three_prime_UTR 72186257 72186684 72186257 ID=Msa1267060-mRNA-1:three_prime_utr;Parent=Msa1267060-mRNA-1
Gene Sequence

>Msa1267060

ATGTTTAGATTAAAGAATAGTGAAAATCTAGCACGGTTCTTGTATCACAAAACTTTGCATAATAACAACCCTATGGCTTATTCAATAGGTTATTATGTTGATCCTTGTTCTCATTTGAGCAAGGTTTATGCTAATGTTTTTGATTTTGGGGTTAATAGAAGATTTGAGTTTGGTAGAAAAACTTGTGGCTTTTATACTAGTGCTAGTAATAGCAGTAGGTTTTTTGTAAGAGCTAATGCAAGGCCTCGCGGTTTTGCATCTGATTTGGAGCAAGGGAATTCTGTTAAGGTTGATAATGATATTGGTGGGTTAAATGGAAGTTCTGCTACGCCTCGTTTTCGGGATCAACGTTTGTCTGAGAAGCTTGTTGTTGCTGTTGATGTGGATGAGGTATTAGGAAATTTCGTGTCGGCTCTCAACAAGTACATTGCAGATCAATATTCATCAAATTATTCAGTTTCTGAATATCATGTGTACGAGTTCTTTAAGATATGGAACTGTTCACGTGATGAAGCTGATATTCGTGTTCATGAGTTTTTTAAGACACCGTATTTCAAGTCAGGGATTCACCCTCTCCCAGGTGCTCAGACGGCGATTCAAAAGTTATCAAGATTTTTTAACCTATCCATTGTAACGTCTCGGCAGAATGTAATTAAGGATCACACTATTGAATGGATAGAGAAGAATTTCCCAGGACTTTTCCATGAGATTCACTTTGGTAACCATTTTGCACTTGATGGGATATCAAGACCAAAATCAGAGATTTGTAGGACTTTAAATGCCAAGGTTCTTATTGATGATAATCCGCGGTATGCAATAGAGTGTGCTGAAGTTGGAATCAAAGTCCTACTTTTTGATTATGAAAACTCATATCCTTGGTCCAAGAATGAGTTGGTTGATGAGCACCCTTTGGTGACCAAAGTTAAGAACTGGACAGAAGTGGAACAACAATTGATGTCATTGATAGCTTCACAGTCTAAATCTTGA

Protein sequence

>Msa1267060

MFRLKNSENLARFLYHKTLHNNNPMAYSIGYYVDPCSHLSKVYANVFDFGVNRRFEFGRKTCGFYTSASNSSRFFVRANARPRGFASDLEQGNSVKVDNDIGGLNGSSATPRFRDQRLSEKLVVAVDVDEVLGNFVSALNKYIADQYSSNYSVSEYHVYEFFKIWNCSRDEADIRVHEFFKTPYFKSGIHPLPGAQTAIQKLSRFFNLSIVTSRQNVIKDHTIEWIEKNFPGLFHEIHFGNHFALDGISRPKSEICRTLNAKVLIDDNPRYAIECAEVGIKVLLFDYENSYPWSKNELVDEHPLVTKVKNWTEVEQQLMSLIASQSKS*