AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1401530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1401530 MtrunA17_Chr4g0069811 95.238 336 6 4 1 328 1 334 0.0 644
Msa1401530 MtrunA17_Chr2g0302031 66.450 307 76 7 34 324 8 303 5.93e-136 388
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1401530 AT4G33140.1 65.354 254 81 2 76 325 102 352 2.18e-119 348

Find 86 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCCAAACCAATTATTTC+TGG 0.133969 tig0022711:+41190 Msa1401530:five_prime_UTR
TTCAATAGTGTTGCTCAAAA+TGG 0.149132 tig0022711:-44755 None:intergenic
TCATGTGTACGAGTTCTTTA+AGG 0.194014 tig0022711:+42774 Msa1401530:CDS
CACCTACAAATCTCTGATTT+TGG 0.208922 tig0022711:-44170 None:intergenic
AATGATATTGGTGGGTTAAA+TGG 0.242698 tig0022711:+41619 Msa1401530:CDS
AGTCGGTTCGGTTGTGTTAT+TGG 0.262651 tig0022711:+41097 Msa1401530:five_prime_UTR
GAATCAATTCCAGAAATAAT+TGG 0.277717 tig0022711:-41199 None:intergenic
AAAATGGAATCTTGCAATAA+TGG 0.283200 tig0022711:-41039 None:intergenic
CTCATCAACCAACTCATTCT+TGG 0.309879 tig0022711:-44504 None:intergenic
ATGTATGTGATTGGGCAAAA+TGG 0.324940 tig0022711:-41055 None:intergenic
AATTCCAGAAATAATTGGTT+TGG 0.329348 tig0022711:-41194 None:intergenic
GTTAAGGTTGATAATGATAT+TGG 0.344303 tig0022711:+41607 Msa1401530:CDS
GTCTCGGCAGAATGTAATTA+AGG 0.345693 tig0022711:+44055 Msa1401530:CDS
TGAATCGCCGTCTGAGCACC+TGG 0.365340 tig0022711:-43910 None:intergenic
AACCCTATGGCTTATTCAAT+AGG 0.387771 tig0022711:+41391 Msa1401530:CDS
GTTAATAGAAGATTTGAGTT+TGG 0.389742 tig0022711:+41475 Msa1401530:CDS
AAGACACCGTATTTCAAGTC+AGG 0.400340 tig0022711:+43874 Msa1401530:CDS
TTCTATGGTTTGAGTCGGTT+CGG 0.402265 tig0022711:+41085 Msa1401530:five_prime_UTR
AAATGGAATCTTGCAATAAT+GGG 0.404843 tig0022711:-41038 None:intergenic
GACCAAAATCAGAGATTTGT+AGG 0.415035 tig0022711:+44168 Msa1401530:CDS
ATATCCCATCAAGTGCAAAA+TGG 0.416702 tig0022711:-44142 None:intergenic
TTCTGTCCAGTTCTTAACTT+TGG 0.420976 tig0022711:-44540 None:intergenic
TCAAATTGAAGTGAATTTGT+CGG 0.422319 tig0022711:-40940 None:intergenic
TGAGCAACACTATTGAAGAT+TGG 0.427191 tig0022711:+44761 Msa1401530:three_prime_UTR
GGAGCAAGGGAATTCTGTTA+AGG 0.434829 tig0022711:+41591 Msa1401530:CDS
TTTGTATGTAGAATTTAGAA+TGG 0.435687 tig0022711:-40973 None:intergenic
TTTATGATCAACATGAATGT+AGG 0.437731 tig0022711:+44847 Msa1401530:three_prime_UTR
TCAATAGTGTTGCTCAAAAT+GGG 0.438019 tig0022711:-44754 None:intergenic
TGGTGACCAAAGTTAAGAAC+TGG 0.453694 tig0022711:+44534 Msa1401530:CDS
ATTATGAAAACTCATATCCT+TGG 0.454107 tig0022711:+44480 Msa1401530:CDS
TGAATCTCATGGAAAAGTCC+TGG 0.458226 tig0022711:-44110 None:intergenic
TGTTGCTGTTGATGTGGATG+AGG 0.476033 tig0022711:+41693 Msa1401530:CDS
TTGGAACAAGCTGTTCACTA+TGG 0.484117 tig0022711:+44780 Msa1401530:three_prime_UTR
GCAATAGAGTGTGCTGAAGT+TGG 0.485346 tig0022711:+44437 Msa1401530:CDS
TTCATTTCTATGGTTTGAGT+CGG 0.494053 tig0022711:+41080 Msa1401530:five_prime_UTR
GCCGTCTGAGCACCTGGGAG+AGG 0.498666 tig0022711:-43904 None:intergenic
TTCTTAACTTTGGTCACCAA+AGG 0.502489 tig0022711:-44530 None:intergenic
TTTGCATAATAACAACCCTA+TGG 0.504044 tig0022711:+41378 Msa1401530:CDS
TAACCTATTGAATAAGCCAT+AGG 0.507567 tig0022711:-41394 None:intergenic
TTAAGGATCACACTATTGAA+TGG 0.508954 tig0022711:+44072 Msa1401530:CDS
GTTGGTTGATGAGCACCCTT+TGG 0.511476 tig0022711:+44514 Msa1401530:CDS
GTTGCTGTTGATGTGGATGA+GGG 0.514964 tig0022711:+41694 Msa1401530:CDS
CCCTCTCCCAGGTGCTCAGA+CGG 0.520221 tig0022711:+43903 Msa1401530:CDS
CCGTCTGAGCACCTGGGAGA+GGG 0.523562 tig0022711:-43903 None:intergenic
TTTGCATCTGATTTGGAGCA+AGG 0.525020 tig0022711:+41577 Msa1401530:CDS
TCCAGCATTTGATGTAGAGA+AGG 0.527196 tig0022711:-44621 None:intergenic
TCCTTGTTCTCATTTGAGCA+AGG 0.527633 tig0022711:+41426 Msa1401530:CDS
TAACAGGACTTTAAATGCCA+AGG 0.528929 tig0022711:+44388 Msa1401530:intron
GCTTGTTGTTGCTGTTGATG+TGG 0.530835 tig0022711:+41687 Msa1401530:CDS
CCCTTCTCTACATCAAATGC+TGG 0.534468 tig0022711:+44620 Msa1401530:three_prime_UTR
AACCTATTGAATAAGCCATA+GGG 0.538609 tig0022711:-41393 None:intergenic
ACCAAAATCATACGTTACAA+TGG 0.539123 tig0022711:-43959 None:intergenic
GGAATCTTGCAATAATGGGT+TGG 0.539485 tig0022711:-41034 None:intergenic
TCTTAACTTTGGTCACCAAA+GGG 0.540216 tig0022711:-44529 None:intergenic
ATTATCATCAATAAGAACCT+TGG 0.545700 tig0022711:-44405 None:intergenic
TGAATCCCTGACTTGAAATA+CGG 0.546358 tig0022711:-43880 None:intergenic
TTTATCATATGCTGAATGAA+TGG 0.548935 tig0022711:+40849 Msa1401530:five_prime_UTR
GGTTACCAAAGTGAATCTCA+TGG 0.554939 tig0022711:-44121 None:intergenic
TGGAACTGTTCACGTGATGA+AGG 0.557011 tig0022711:+43465 Msa1401530:CDS
TTGCATCTGATTTGGAGCAA+GGG 0.562036 tig0022711:+41578 Msa1401530:CDS
AGACACCGTATTTCAAGTCA+GGG 0.563775 tig0022711:+43875 Msa1401530:CDS
TCAGGGATTCACCCTCTCCC+AGG 0.563877 tig0022711:+43892 Msa1401530:CDS
ACCAACTCATTCTTGGACCA+AGG 0.564088 tig0022711:-44497 None:intergenic
GAATCTCATGGAAAAGTCCT+GGG 0.569077 tig0022711:-44109 None:intergenic
CCAGCATTTGATGTAGAGAA+GGG 0.575343 tig0022711:-44620 None:intergenic
AGGTTGATAATGATATTGGT+GGG 0.577068 tig0022711:+41611 Msa1401530:CDS
AAGGTTGATAATGATATTGG+TGG 0.579097 tig0022711:+41610 Msa1401530:CDS
AGTTAAGAACTGGACAGAAG+TGG 0.584067 tig0022711:+44544 Msa1401530:CDS
TGGATAGAGAAGAATTTCCC+AGG 0.586791 tig0022711:+44092 Msa1401530:CDS
AATCATACGTTACAATGGAT+AGG 0.596490 tig0022711:-43954 None:intergenic
TGAAGACGAAAGGAGGAAAG+TGG 0.611584 tig0022711:-40754 None:intergenic
GAACAAGCTGTTCACTATGG+TGG 0.620858 tig0022711:+44783 Msa1401530:three_prime_UTR
CTAGTGCTAGTAATAGCAGT+AGG 0.623766 tig0022711:+41521 Msa1401530:CDS
CAAGAAGATAACTATGCTAG+AGG 0.628267 tig0022711:+44706 Msa1401530:three_prime_UTR
ACCTTGCTCAAATGAGAACA+AGG 0.632511 tig0022711:-41427 None:intergenic
TCCTTGGTCCAAGAATGAGT+TGG 0.633229 tig0022711:+44496 Msa1401530:CDS
GATCAACATGAATGTAGGAG+TGG 0.636662 tig0022711:+44852 Msa1401530:three_prime_UTR
AGACTGCAAATCATCAAAAG+CGG 0.643036 tig0022711:-41161 None:intergenic
GAATCGCCGTCTGAGCACCT+GGG 0.644858 tig0022711:-43909 None:intergenic
AGAATAGTGAAAATCTAGCA+CGG 0.647149 tig0022711:+41338 Msa1401530:CDS
TTCTTATTGATGATAATCCG+CGG 0.647289 tig0022711:+44411 Msa1401530:CDS
AAACGTTGATCCCGAAAACG+AGG 0.653630 tig0022711:-41655 None:intergenic
AGTATTAGGAAATTTCGTGT+CGG 0.674898 tig0022711:+42696 Msa1401530:intron
AGAGCTAATGCAAGGCCTCG+CGG 0.678484 tig0022711:+41553 Msa1401530:CDS
GCACACTCTATTGCATACCG+CGG 0.678841 tig0022711:-44428 None:intergenic
AAATCAGATGCAAAACCGCG+AGG 0.732365 tig0022711:-41568 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTTTAAAATAGAATAA+AGG + tig0022711:42296-42315 Msa1401530:intron 10.0%
!!! GATAATTTTGAAATGAAAAA+AGG - tig0022711:41256-41275 None:intergenic 15.0%
!!! TATTTTATAATAGCTTATCA+TGG + tig0022711:41824-41843 Msa1401530:intron 15.0%
!!! TTTCACTAATTTTATTCTTT+CGG + tig0022711:43784-43803 Msa1401530:intron 15.0%
!! AACATATAATAAATGTGATT+CGG - tig0022711:44032-44051 None:intergenic 15.0%
!! TTTGTATGTAGAATTTAGAA+TGG - tig0022711:40976-40995 None:intergenic 20.0%
!! AATGAAAAATGTATGTGATT+GGG - tig0022711:41066-41085 None:intergenic 20.0%
!! AAATGAAAAATGTATGTGAT+TGG - tig0022711:41067-41086 None:intergenic 20.0%
!!! ACATACATTTTTCATTTCTA+TGG + tig0022711:41070-41089 Msa1401530:five_prime_UTR 20.0%
!!! AAATCTGATTTTGAGAAAAA+GGG - tig0022711:41129-41148 None:intergenic 20.0%
!!! TATGCTAATGTTTTTGATTT+TGG + tig0022711:41451-41470 Msa1401530:CDS 20.0%
!!! ATGCTAATGTTTTTGATTTT+GGG + tig0022711:41452-41471 Msa1401530:CDS 20.0%
!! GGAATCAATCTTTATATTAA+TGG + tig0022711:41894-41913 Msa1401530:intron 20.0%
!! ATCAATCTTTATATTAATGG+AGG + tig0022711:41897-41916 Msa1401530:intron 20.0%
!!! AAGAAAAAATAACTGATTCA+AGG - tig0022711:42582-42601 None:intergenic 20.0%
!!! TCAATTTTTTAAGCAGTATT+AGG + tig0022711:42682-42701 Msa1401530:intron 20.0%
!! CAATATTAAACAAATGTCAT+CGG + tig0022711:42856-42875 Msa1401530:intron 20.0%
!! TCTATATTAATACATAAGAC+TGG - tig0022711:42931-42950 None:intergenic 20.0%
!! ATATCTGTAACAGAAATTAA+GGG - tig0022711:43446-43465 None:intergenic 20.0%
!! GAAAAATTCATTAGAGAATT+GGG - tig0022711:43701-43720 None:intergenic 20.0%
!!! TTTTATCAAGATTTTTGTGT+AGG + tig0022711:43757-43776 Msa1401530:intron 20.0%
!! ATCACATTTATTATATGTTC+AGG + tig0022711:44033-44052 Msa1401530:intron 20.0%
!! GATAAAAAATAGTACTTGAA+CGG - tig0022711:44338-44357 None:intergenic 20.0%
!!! AGTTTTCATAATCAAAAAGT+AGG - tig0022711:44472-44491 None:intergenic 20.0%
!!! GTGATTTTATTACTATAACT+AGG + tig0022711:44814-44833 Msa1401530:three_prime_UTR 20.0%
!!! ATATTTTTGATGAAGACGAA+AGG - tig0022711:40767-40786 None:intergenic 25.0%
! TTTATCATATGCTGAATGAA+TGG + tig0022711:40849-40868 Msa1401530:five_prime_UTR 25.0%
! TCAAATTGAAGTGAATTTGT+CGG - tig0022711:40943-40962 None:intergenic 25.0%
! AAATGGAATCTTGCAATAAT+GGG - tig0022711:41041-41060 None:intergenic 25.0%
! AAAATGGAATCTTGCAATAA+TGG - tig0022711:41042-41061 None:intergenic 25.0%
!!! AATCTGATTTTGAGAAAAAG+GGG - tig0022711:41128-41147 None:intergenic 25.0%
!!! CAAATCTGATTTTGAGAAAA+AGG - tig0022711:41130-41149 None:intergenic 25.0%
! AATTCCAGAAATAATTGGTT+TGG - tig0022711:41197-41216 None:intergenic 25.0%
! GAATCAATTCCAGAAATAAT+TGG - tig0022711:41202-41221 None:intergenic 25.0%
!!! TGCTAATGTTTTTGATTTTG+GGG + tig0022711:41453-41472 Msa1401530:CDS 25.0%
!! GTTAATAGAAGATTTGAGTT+TGG + tig0022711:41475-41494 Msa1401530:CDS 25.0%
!!! GTTAAGGTTGATAATGATAT+TGG + tig0022711:41607-41626 Msa1401530:CDS 25.0%
!!! TGTGTGTTTTTTAATATGCA+AGG + tig0022711:41958-41977 Msa1401530:intron 25.0%
! AGAACTTCACATTTAACAAA+AGG - tig0022711:42205-42224 None:intergenic 25.0%
!!! TTCTTTAAGGTATCTTTTGT+TGG + tig0022711:42787-42806 Msa1401530:intron 25.0%
! CGATGACATTTGTTTAATAT+TGG - tig0022711:42858-42877 None:intergenic 25.0%
! ATAAGCCTAATTTGAATAGA+GGG - tig0022711:42975-42994 None:intergenic 25.0%
! AATAAGCCTAATTTGAATAG+AGG - tig0022711:42976-42995 None:intergenic 25.0%
!! TTAATTTTCTTTCGTGATAG+AGG + tig0022711:43005-43024 Msa1401530:intron 25.0%
! TATTAGAGAAACCATTAGAA+AGG + tig0022711:43049-43068 Msa1401530:intron 25.0%
! GAAAGATTTAGACAGAATTT+GGG - tig0022711:43265-43284 None:intergenic 25.0%
!!! AGAACTACTTTTTCTATGAA+TGG + tig0022711:43297-43316 Msa1401530:intron 25.0%
!!! GAACTACTTTTTCTATGAAT+GGG + tig0022711:43298-43317 Msa1401530:intron 25.0%
! CAAATTTACAACAAAAGCAA+TGG - tig0022711:43393-43412 None:intergenic 25.0%
! CATATCTGTAACAGAAATTA+AGG - tig0022711:43447-43466 None:intergenic 25.0%
! CTTAATTTCTGTTACAGATA+TGG + tig0022711:43445-43464 Msa1401530:intron 25.0%
!!! ATAGCAAAATTGTTCTAAAG+AGG - tig0022711:43502-43521 None:intergenic 25.0%
! CCTTTGAACATAGATTTATA+GGG - tig0022711:43640-43659 None:intergenic 25.0%
! CCTATAAATCTATGTTCAAA+GGG + tig0022711:43638-43657 Msa1401530:intron 25.0%
! GGAAAAATTCATTAGAGAAT+TGG - tig0022711:43702-43721 None:intergenic 25.0%
! TTTCCTAATTCTTGTTCAAA+AGG + tig0022711:43717-43736 Msa1401530:intron 25.0%
! TTCCTAATTCTTGTTCAAAA+GGG + tig0022711:43718-43737 Msa1401530:intron 25.0%
! TTTATTATATGTTCAGGTCT+CGG + tig0022711:44039-44058 Msa1401530:intron 25.0%
!! TGATATGACTTGATTTTCTT+TGG + tig0022711:44224-44243 Msa1401530:intron 25.0%
! ATTATCATCAATAAGAACCT+TGG - tig0022711:44408-44427 None:intergenic 25.0%
! ATTATGAAAACTCATATCCT+TGG + tig0022711:44480-44499 Msa1401530:CDS 25.0%
! TTTATGATCAACATGAATGT+AGG + tig0022711:44847-44866 Msa1401530:three_prime_UTR 25.0%
!!! TCTCGTCTTTTTTCATTCTT+TGG + tig0022711:41009-41028 Msa1401530:five_prime_UTR 30.0%
TTCATTTCTATGGTTTGAGT+CGG + tig0022711:41080-41099 Msa1401530:five_prime_UTR 30.0%
!! ATCTGATTTTGAGAAAAAGG+GGG - tig0022711:41127-41146 None:intergenic 30.0%
! ATCATCAAAAGCGGTTTTTA+GGG - tig0022711:41155-41174 None:intergenic 30.0%
! AATCATCAAAAGCGGTTTTT+AGG - tig0022711:41156-41175 None:intergenic 30.0%
CAATCCAAACCAATTATTTC+TGG + tig0022711:41190-41209 Msa1401530:five_prime_UTR 30.0%
AGAATAGTGAAAATCTAGCA+CGG + tig0022711:41338-41357 Msa1401530:CDS 30.0%
TTTGCATAATAACAACCCTA+TGG + tig0022711:41378-41397 Msa1401530:CDS 30.0%
AACCTATTGAATAAGCCATA+GGG - tig0022711:41396-41415 None:intergenic 30.0%
TAACCTATTGAATAAGCCAT+AGG - tig0022711:41397-41416 None:intergenic 30.0%
! TTTTTGTAAGAGCTAATGCA+AGG + tig0022711:41545-41564 Msa1401530:CDS 30.0%
!! AAGGTTGATAATGATATTGG+TGG + tig0022711:41610-41629 Msa1401530:CDS 30.0%
!! AGGTTGATAATGATATTGGT+GGG + tig0022711:41611-41630 Msa1401530:CDS 30.0%
!! AATGATATTGGTGGGTTAAA+TGG + tig0022711:41619-41638 Msa1401530:CDS 30.0%
TAATATTGTTGCTCTCTGAT+AGG + tig0022711:41870-41889 Msa1401530:intron 30.0%
TGAACATATGCATGAAGATT+TGG - tig0022711:42093-42112 None:intergenic 30.0%
TACACATTACCAAGAATTTC+TGG - tig0022711:42235-42254 None:intergenic 30.0%
AGTATTAGGAAATTTCGTGT+CGG + tig0022711:42696-42715 Msa1401530:intron 30.0%
ATACATAAGACTGGAGAATA+GGG - tig0022711:42922-42941 None:intergenic 30.0%
AATACATAAGACTGGAGAAT+AGG - tig0022711:42923-42942 None:intergenic 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG - tig0022711:43041-43060 None:intergenic 30.0%
AACCATTAGAAAGGATTTAG+AGG + tig0022711:43058-43077 Msa1401530:intron 30.0%
GTTCTGTCATAAACCAAATT+TGG - tig0022711:43098-43117 None:intergenic 30.0%
!!! CTTGTTTGTTGTTGTTTTGT+TGG + tig0022711:43168-43187 Msa1401530:intron 30.0%
GGAAAGATTTAGACAGAATT+TGG - tig0022711:43266-43285 None:intergenic 30.0%
ATCATAATTCAGTTCCTTGT+TGG + tig0022711:43332-43351 Msa1401530:intron 30.0%
TTTGTGCATATGCTTGAATT+TGG + tig0022711:43409-43428 Msa1401530:intron 30.0%
! CAACAATTTTCTGTACACAA+TGG - tig0022711:43526-43545 None:intergenic 30.0%
CATTGTGTACAGAAAATTGT+TGG + tig0022711:43524-43543 Msa1401530:intron 30.0%
GAACTTGAACAAATCAAACA+AGG - tig0022711:43563-43582 None:intergenic 30.0%
CCCTATAAATCTATGTTCAA+AGG + tig0022711:43637-43656 Msa1401530:intron 30.0%
CCCTTTGAACATAGATTTAT+AGG - tig0022711:43641-43660 None:intergenic 30.0%
!!! AAGTTTTGTTTTCACGATTG+AGG + tig0022711:43671-43690 Msa1401530:intron 30.0%
TTATTCTTTCGGATGACTAA+TGG + tig0022711:43795-43814 Msa1401530:intron 30.0%
AATCATACGTTACAATGGAT+AGG - tig0022711:43957-43976 None:intergenic 30.0%
! TCCATTGTAACGTATGATTT+TGG + tig0022711:43958-43977 Msa1401530:intron 30.0%
ACCAAAATCATACGTTACAA+TGG - tig0022711:43962-43981 None:intergenic 30.0%
!! GTAACGTATGATTTTGGTAT+TGG + tig0022711:43964-43983 Msa1401530:intron 30.0%
TTAAGGATCACACTATTGAA+TGG + tig0022711:44072-44091 Msa1401530:CDS 30.0%
ATAGAGAAAAACAGATGAAG+AGG - tig0022711:44205-44224 None:intergenic 30.0%
TGATGTGAATCTAAACAGTA+GGG - tig0022711:44276-44295 None:intergenic 30.0%
! TTCTTATTGATGATAATCCG+CGG + tig0022711:44411-44430 Msa1401530:CDS 30.0%
! TCAATAGTGTTGCTCAAAAT+GGG - tig0022711:44757-44776 None:intergenic 30.0%
! TTCAATAGTGTTGCTCAAAA+TGG - tig0022711:44758-44777 None:intergenic 30.0%
! AGAAGAGAACATAGATTTTG+TGG - tig0022711:44915-44934 None:intergenic 30.0%
!! TTTTGATGCTGTTTGTGTTT+TGG + tig0022711:44946-44965 Msa1401530:three_prime_UTR 30.0%
! TTTTTGATGAAGACGAAAGG+AGG - tig0022711:40764-40783 None:intergenic 35.0%
ATGTATGTGATTGGGCAAAA+TGG - tig0022711:41058-41077 None:intergenic 35.0%
!! TCATCAAAAGCGGTTTTTAG+GGG - tig0022711:41154-41173 None:intergenic 35.0%
AGACTGCAAATCATCAAAAG+CGG - tig0022711:41164-41183 None:intergenic 35.0%
AACCCTATGGCTTATTCAAT+AGG + tig0022711:41391-41410 Msa1401530:CDS 35.0%
GAGTTTGGTAGAAAAACTTG+TGG + tig0022711:41490-41509 Msa1401530:CDS 35.0%
TGAATAATGAAGACCTTGTG+TGG + tig0022711:41772-41791 Msa1401530:intron 35.0%
ATATTTGCCGAAATCTTAGC+TGG + tig0022711:42116-42135 Msa1401530:intron 35.0%
ACATTGACCAGCTAAGATTT+CGG - tig0022711:42126-42145 None:intergenic 35.0%
! ATTCTTTTCAGCATGCAACT+AGG + tig0022711:42158-42177 Msa1401530:intron 35.0%
CTGAAGATACCAGAAATTCT+TGG + tig0022711:42223-42242 Msa1401530:intron 35.0%
!! TGTTTTGAGTGACTGATACA+TGG + tig0022711:42328-42347 Msa1401530:intron 35.0%
AATTGTGAATTGTCAACTCC+AGG + tig0022711:42512-42531 Msa1401530:intron 35.0%
CACACATCAGAGAATATATG+TGG - tig0022711:42650-42669 None:intergenic 35.0%
TCATGTGTACGAGTTCTTTA+AGG + tig0022711:42774-42793 Msa1401530:CDS 35.0%
TAAACAAATGTCATCGGAAC+AGG + tig0022711:42862-42881 Msa1401530:intron 35.0%
TACATAAGACTGGAGAATAG+GGG - tig0022711:42921-42940 None:intergenic 35.0%
CTTTGCCCTCTATTCAAATT+AGG + tig0022711:42967-42986 Msa1401530:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG - tig0022711:43063-43082 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATT+TGG + tig0022711:43082-43101 Msa1401530:intron 35.0%
TGGTTTATGACAGAACACTA+TGG + tig0022711:43102-43121 Msa1401530:intron 35.0%
!!! GTTGTTGTTTTGTTGGTCAA+TGG + tig0022711:43175-43194 Msa1401530:intron 35.0%
GACTAAAAAATTCACGTGTC+AGG - tig0022711:43216-43235 None:intergenic 35.0%
!! AAGTCTCTCTCTTTGAAATC+TGG + tig0022711:43591-43610 Msa1401530:intron 35.0%
! GACCCTTTTGAACAAGAATT+AGG - tig0022711:43723-43742 None:intergenic 35.0%
! TGAATCCCTGACTTGAAATA+CGG - tig0022711:43883-43902 None:intergenic 35.0%
GGACTTTCATTAACCTTAAG+AGG + tig0022711:43985-44004 Msa1401530:intron 35.0%
AACCTTAAGAGGAATCTTGT+CGG + tig0022711:43996-44015 Msa1401530:intron 35.0%
! CTTTTCCATGAGATTCACTT+TGG + tig0022711:44116-44135 Msa1401530:CDS 35.0%
! GTAACCATTTTGCACTTGAT+GGG + tig0022711:44138-44157 Msa1401530:CDS 35.0%
ATATCCCATCAAGTGCAAAA+TGG - tig0022711:44145-44164 None:intergenic 35.0%
GACCAAAATCAGAGATTTGT+AGG + tig0022711:44168-44187 Msa1401530:CDS 35.0%
! CACCTACAAATCTCTGATTT+TGG - tig0022711:44173-44192 None:intergenic 35.0%
AAAACAGATGAAGAGGATCA+AGG - tig0022711:44198-44217 None:intergenic 35.0%
GTGATGTGAATCTAAACAGT+AGG - tig0022711:44277-44296 None:intergenic 35.0%
GGAAGAAAAACAGTAGGAAA+AGG - tig0022711:44302-44321 None:intergenic 35.0%
!! GTTCTAGGAAGAAAAACAGT+AGG - tig0022711:44308-44327 None:intergenic 35.0%
!! TTGAACGGATTAAGAGTTCT+AGG - tig0022711:44323-44342 None:intergenic 35.0%
!! ACTTGCTGTTTCTCATTAAC+AGG + tig0022711:44372-44391 Msa1401530:intron 35.0%
TAACAGGACTTTAAATGCCA+AGG + tig0022711:44388-44407 Msa1401530:intron 35.0%
TCTTAACTTTGGTCACCAAA+GGG - tig0022711:44532-44551 None:intergenic 35.0%
TTCTTAACTTTGGTCACCAA+AGG - tig0022711:44533-44552 None:intergenic 35.0%
TTCTGTCCAGTTCTTAACTT+TGG - tig0022711:44543-44562 None:intergenic 35.0%
CAAGAAGATAACTATGCTAG+AGG + tig0022711:44706-44725 Msa1401530:three_prime_UTR 35.0%
TGAGCAACACTATTGAAGAT+TGG + tig0022711:44761-44780 Msa1401530:three_prime_UTR 35.0%
!! GGAATCTTGCAATAATGGGT+TGG - tig0022711:41037-41056 None:intergenic 40.0%
TTCTATGGTTTGAGTCGGTT+CGG + tig0022711:41085-41104 Msa1401530:five_prime_UTR 40.0%
TCCTTGTTCTCATTTGAGCA+AGG + tig0022711:41426-41445 Msa1401530:CDS 40.0%
ACCTTGCTCAAATGAGAACA+AGG - tig0022711:41430-41449 None:intergenic 40.0%
CTAGTGCTAGTAATAGCAGT+AGG + tig0022711:41521-41540 Msa1401530:CDS 40.0%
!! TTTGCATCTGATTTGGAGCA+AGG + tig0022711:41577-41596 Msa1401530:CDS 40.0%
!! TTGCATCTGATTTGGAGCAA+GGG + tig0022711:41578-41597 Msa1401530:CDS 40.0%
TACAGTCAAGATTCCACACA+AGG - tig0022711:41788-41807 None:intergenic 40.0%
TATTGTTGCTCTCTGATAGG+AGG + tig0022711:41873-41892 Msa1401530:intron 40.0%
!! TCTTGGTAATGTGTAGTGAC+TGG + tig0022711:42240-42259 Msa1401530:intron 40.0%
TTGAAACGATGTCTAGTGAC+TGG + tig0022711:42273-42292 Msa1401530:intron 40.0%
ATCAAAGATTCATGCACACC+TGG - tig0022711:42533-42552 None:intergenic 40.0%
ACATAAGACTGGAGAATAGG+GGG - tig0022711:42920-42939 None:intergenic 40.0%
TTCTTTCGTGATAGAGGTAG+AGG + tig0022711:43011-43030 Msa1401530:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG + tig0022711:43070-43089 Msa1401530:intron 40.0%
CGATCGATGTTCAACAGATA+TGG - tig0022711:43238-43257 None:intergenic 40.0%
TATCTGTTGAACATCGATCG+CGG + tig0022711:43238-43257 Msa1401530:intron 40.0%
AAGTAGTTCTCTTCAGCAAG+AGG - tig0022711:43287-43306 None:intergenic 40.0%
!! TTCAGTTCCTTGTTGGCTTT+AGG + tig0022711:43339-43358 Msa1401530:intron 40.0%
AGATACACCTAAAGCCAACA+AGG - tig0022711:43349-43368 None:intergenic 40.0%
!! TTGTTGGCTTTAGGTGTATC+TGG + tig0022711:43348-43367 Msa1401530:intron 40.0%
! ACAGAAATTAAGGGTGCATC+AGG - tig0022711:43437-43456 None:intergenic 40.0%
! AAGACACCGTATTTCAAGTC+AGG + tig0022711:43874-43893 Msa1401530:CDS 40.0%
! AGACACCGTATTTCAAGTCA+GGG + tig0022711:43875-43894 Msa1401530:CDS 40.0%
ACCTTAAGAGGAATCTTGTC+GGG + tig0022711:43997-44016 Msa1401530:intron 40.0%
GTCTCGGCAGAATGTAATTA+AGG + tig0022711:44055-44074 Msa1401530:CDS 40.0%
TGGATAGAGAAGAATTTCCC+AGG + tig0022711:44092-44111 Msa1401530:CDS 40.0%
GAATCTCATGGAAAAGTCCT+GGG - tig0022711:44112-44131 None:intergenic 40.0%
TGAATCTCATGGAAAAGTCC+TGG - tig0022711:44113-44132 None:intergenic 40.0%
GGTTACCAAAGTGAATCTCA+TGG - tig0022711:44124-44143 None:intergenic 40.0%
! GGTAACCATTTTGCACTTGA+TGG + tig0022711:44137-44156 Msa1401530:CDS 40.0%
AATCTAAACAGTAGGGAAGG+AGG - tig0022711:44269-44288 None:intergenic 40.0%
GTGAATCTAAACAGTAGGGA+AGG - tig0022711:44272-44291 None:intergenic 40.0%
CTCATCAACCAACTCATTCT+TGG - tig0022711:44507-44526 None:intergenic 40.0%
TGGTGACCAAAGTTAAGAAC+TGG + tig0022711:44534-44553 Msa1401530:CDS 40.0%
AGTTAAGAACTGGACAGAAG+TGG + tig0022711:44544-44563 Msa1401530:CDS 40.0%
CCAGCATTTGATGTAGAGAA+GGG - tig0022711:44623-44642 None:intergenic 40.0%
TCCAGCATTTGATGTAGAGA+AGG - tig0022711:44624-44643 None:intergenic 40.0%
TTGGAACAAGCTGTTCACTA+TGG + tig0022711:44780-44799 Msa1401530:three_prime_UTR 40.0%
GATCAACATGAATGTAGGAG+TGG + tig0022711:44852-44871 Msa1401530:three_prime_UTR 40.0%
TGAAGACGAAAGGAGGAAAG+TGG - tig0022711:40757-40776 None:intergenic 45.0%
!! AGTCGGTTCGGTTGTGTTAT+TGG + tig0022711:41097-41116 Msa1401530:five_prime_UTR 45.0%
AAATCAGATGCAAAACCGCG+AGG - tig0022711:41571-41590 None:intergenic 45.0%
! TCGCGGTTTTGCATCTGATT+TGG + tig0022711:41570-41589 Msa1401530:CDS 45.0%
GGAGCAAGGGAATTCTGTTA+AGG + tig0022711:41591-41610 Msa1401530:CDS 45.0%
AAACGTTGATCCCGAAAACG+AGG - tig0022711:41658-41677 None:intergenic 45.0%
!! GCTTGTTGTTGCTGTTGATG+TGG + tig0022711:41687-41706 Msa1401530:CDS 45.0%
! TGTTGCTGTTGATGTGGATG+AGG + tig0022711:41693-41712 Msa1401530:CDS 45.0%
! GTTGCTGTTGATGTGGATGA+GGG + tig0022711:41694-41713 Msa1401530:CDS 45.0%
TCTTAGCTGGTCAATGTGTG+AGG + tig0022711:42129-42148 Msa1401530:intron 45.0%
CCAGCTATCATCAAACAGAG+GGG - tig0022711:42367-42386 None:intergenic 45.0%
GCCAGCTATCATCAAACAGA+GGG - tig0022711:42368-42387 None:intergenic 45.0%
AGCCAGCTATCATCAAACAG+AGG - tig0022711:42369-42388 None:intergenic 45.0%
TGAGACATCGCACTGAAAAC+AGG - tig0022711:42559-42578 None:intergenic 45.0%
ATAGAGGTAGAGGAAGACCT+AGG + tig0022711:43021-43040 Msa1401530:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0022711:43151-43170 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - tig0022711:43152-43171 None:intergenic 45.0%
! ACAAGCCTTATCCCACTAAG+TGG - tig0022711:43153-43172 None:intergenic 45.0%
TGGAACTGTTCACGTGATGA+AGG + tig0022711:43465-43484 Msa1401530:CDS 45.0%
! CTTTCGGATGACTAATGGAC+TGG + tig0022711:43800-43819 Msa1401530:intron 45.0%
TCCCGACAAGATTCCTCTTA+AGG - tig0022711:44001-44020 None:intergenic 45.0%
GCAATAGAGTGTGCTGAAGT+TGG + tig0022711:44437-44456 Msa1401530:CDS 45.0%
TCCTTGGTCCAAGAATGAGT+TGG + tig0022711:44496-44515 Msa1401530:CDS 45.0%
ACCAACTCATTCTTGGACCA+AGG - tig0022711:44500-44519 None:intergenic 45.0%
CCCTTCTCTACATCAAATGC+TGG + tig0022711:44620-44639 Msa1401530:three_prime_UTR 45.0%
GAACAAGCTGTTCACTATGG+TGG + tig0022711:44783-44802 Msa1401530:three_prime_UTR 45.0%
! GTTCTGCTACGCCTCGTTTT+CGG + tig0022711:41644-41663 Msa1401530:CDS 50.0%
! TTCTGCTACGCCTCGTTTTC+GGG + tig0022711:41645-41664 Msa1401530:CDS 50.0%
AGCTTATCATGGTGCTCGCA+TGG + tig0022711:41835-41854 Msa1401530:intron 50.0%
TAGCTGGTCAATGTGTGAGG+TGG + tig0022711:42132-42151 Msa1401530:intron 50.0%
! CCCCTCTGTTTGATGATAGC+TGG + tig0022711:42364-42383 Msa1401530:intron 50.0%
CTGGCTGCAATATTCTTGCC+TGG + tig0022711:42383-42402 Msa1401530:intron 50.0%
TTTCCAGCATGATCTGAGCC+AGG - tig0022711:42404-42423 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - tig0022711:43147-43166 None:intergenic 50.0%
!! CGGATGACTAATGGACTGGT+TGG + tig0022711:43804-43823 Msa1401530:intron 50.0%
GCACACTCTATTGCATACCG+CGG - tig0022711:44431-44450 None:intergenic 50.0%
!! GTTGGTTGATGAGCACCCTT+TGG + tig0022711:44514-44533 Msa1401530:CDS 50.0%
AGAGCTAATGCAAGGCCTCG+CGG + tig0022711:41553-41572 Msa1401530:CDS 55.0%
TTGCCTGGCTCAGATCATGC+TGG + tig0022711:42398-42417 Msa1401530:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - tig0022711:43139-43158 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + tig0022711:43138-43157 Msa1401530:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + tig0022711:43139-43158 Msa1401530:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + tig0022711:43145-43164 Msa1401530:intron 55.0%
TCAGGGATTCACCCTCTCCC+AGG + tig0022711:43892-43911 Msa1401530:CDS 60.0%
GAATCGCCGTCTGAGCACCT+GGG - tig0022711:43912-43931 None:intergenic 60.0%
TGAATCGCCGTCTGAGCACC+TGG - tig0022711:43913-43932 None:intergenic 60.0%
CCGTCTGAGCACCTGGGAGA+GGG - tig0022711:43906-43925 None:intergenic 65.0%
CCCTCTCCCAGGTGCTCAGA+CGG + tig0022711:43903-43922 Msa1401530:CDS 65.0%
GCCGTCTGAGCACCTGGGAG+AGG - tig0022711:43907-43926 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0022711 gene 40744 45038 40744 ID=Msa1401530;Name=Msa1401530
tig0022711 mRNA 40744 45038 40744 ID=Msa1401530-mRNA-1;Parent=Msa1401530;Name=Msa1401530-mRNA-1;_AED=0.26;_eAED=0.26;_QI=581|1|1|1|1|1|6|428|328
tig0022711 exon 40744 41715 40744 ID=Msa1401530-mRNA-1:exon:18427;Parent=Msa1401530-mRNA-1
tig0022711 exon 42698 42795 42698 ID=Msa1401530-mRNA-1:exon:18428;Parent=Msa1401530-mRNA-1
tig0022711 exon 43462 43486 43462 ID=Msa1401530-mRNA-1:exon:18429;Parent=Msa1401530-mRNA-1
tig0022711 exon 43848 43968 43848 ID=Msa1401530-mRNA-1:exon:18430;Parent=Msa1401530-mRNA-1
tig0022711 exon 44055 44189 44055 ID=Msa1401530-mRNA-1:exon:18431;Parent=Msa1401530-mRNA-1
tig0022711 exon 44394 45038 44394 ID=Msa1401530-mRNA-1:exon:18432;Parent=Msa1401530-mRNA-1
tig0022711 five_prime_UTR 40744 41324 40744 ID=Msa1401530-mRNA-1:five_prime_utr;Parent=Msa1401530-mRNA-1
tig0022711 CDS 41325 41715 41325 ID=Msa1401530-mRNA-1:cds;Parent=Msa1401530-mRNA-1
tig0022711 CDS 42698 42795 42698 ID=Msa1401530-mRNA-1:cds;Parent=Msa1401530-mRNA-1
tig0022711 CDS 43462 43486 43462 ID=Msa1401530-mRNA-1:cds;Parent=Msa1401530-mRNA-1
tig0022711 CDS 43848 43968 43848 ID=Msa1401530-mRNA-1:cds;Parent=Msa1401530-mRNA-1
tig0022711 CDS 44055 44189 44055 ID=Msa1401530-mRNA-1:cds;Parent=Msa1401530-mRNA-1
tig0022711 CDS 44394 44610 44394 ID=Msa1401530-mRNA-1:cds;Parent=Msa1401530-mRNA-1
tig0022711 three_prime_UTR 44611 45038 44611 ID=Msa1401530-mRNA-1:three_prime_utr;Parent=Msa1401530-mRNA-1
Gene Sequence

>Msa1401530

ATGTTTAGATTAAAGAATAGTGAAAATCTAGCACGGTTCTTGTATCACAAAACTTTGCATAATAACAACCCTATGGCTTATTCAATAGGTTATTATGTTGATCCTTGTTCTCATTTGAGCAAGGTTTATGCTAATGTTTTTGATTTTGGGGTTAATAGAAGATTTGAGTTTGGTAGAAAAACTTGTGGCTTTTATACTAGTGCTAGTAATAGCAGTAGGTTTTTTGTAAGAGCTAATGCAAGGCCTCGCGGTTTTGCATCTGATTTGGAGCAAGGGAATTCTGTTAAGGTTGATAATGATATTGGTGGGTTAAATGGAAGTTCTGCTACGCCTCGTTTTCGGGATCAACGTTTGTCTGAGAAGCTTGTTGTTGCTGTTGATGTGGATGAGGTATTAGGAAATTTCGTGTCGGCTCTCAACAAGTACATTGCAGATCAATATTCATCAAATTATTCAGTTTCTGAATATCATGTGTACGAGTTCTTTAAGATATGGAACTGTTCACGTGATGAAGCTGATATTCGTGTTCATGAGTTTTTTAAGACACCGTATTTCAAGTCAGGGATTCACCCTCTCCCAGGTGCTCAGACGGCGATTCAAAAGTTATCAAGATTTTTTAACCTATCCATTGTAACGTCTCGGCAGAATGTAATTAAGGATCACACTATTGAATGGATAGAGAAGAATTTCCCAGGACTTTTCCATGAGATTCACTTTGGTAACCATTTTGCACTTGATGGGATATCAAGACCAAAATCAGAGATTTGTAGGACTTTAAATGCCAAGGTTCTTATTGATGATAATCCGCGGTATGCAATAGAGTGTGCTGAAGTTGGAATCAAAGTCCTACTTTTTGATTATGAAAACTCATATCCTTGGTCCAAGAATGAGTTGGTTGATGAGCACCCTTTGGTGACCAAAGTTAAGAACTGGACAGAAGTGGAACAACAATTGATGTCATTGATAGCTTCACAGTCTAAATCTTGA

Protein sequence

>Msa1401530

MFRLKNSENLARFLYHKTLHNNNPMAYSIGYYVDPCSHLSKVYANVFDFGVNRRFEFGRKTCGFYTSASNSSRFFVRANARPRGFASDLEQGNSVKVDNDIGGLNGSSATPRFRDQRLSEKLVVAVDVDEVLGNFVSALNKYIADQYSSNYSVSEYHVYEFFKIWNCSRDEADIRVHEFFKTPYFKSGIHPLPGAQTAIQKLSRFFNLSIVTSRQNVIKDHTIEWIEKNFPGLFHEIHFGNHFALDGISRPKSEICRTLNAKVLIDDNPRYAIECAEVGIKVLLFDYENSYPWSKNELVDEHPLVTKVKNWTEVEQQLMSLIASQSKS*