AlfalfaGEDB | Msa0418400

M. sativa cultivar zhongmu-4 / Msa0418400

KEGG: K13448
GO: GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:1901700
PFAM: PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418400	XP_024635986.2	94.964	139	7	0	1	139	1	139	1.04e-88	264

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418400	sp\|Q9SRE6\|CML38_ARATH	47.826	138	72	0	2	139	40	177	1.39e-37	129

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418400	G7J5J2	94.964	139	7	0	1	139	1	139	4.95e-89	264

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003630	Msa0418400	0.801147	1.032547e-48	-8.615850e-47
Msa0004480	Msa0418400	0.817530	3.143802e-52	-8.615850e-47
Msa0010490	Msa0418400	0.800133	1.662623e-48	-8.615850e-47
Msa0010500	Msa0418400	0.800248	1.575169e-48	-8.615850e-47
Msa0012100	Msa0418400	0.808349	3.234994e-50	-8.615850e-47
Msa0017320	Msa0418400	0.832041	1.185392e-55	-8.615850e-47
Msa0030480	Msa0418400	0.810605	1.060836e-50	-8.615850e-47
Msa0033850	Msa0418400	0.810967	8.855791e-51	-8.615850e-47
Msa0036540	Msa0418400	0.806251	9.009177e-50	-8.615850e-47
Msa0060070	Msa0418400	0.816037	6.797619e-52	-8.615850e-47
Msa0064140	Msa0418400	0.808034	3.775289e-50	-8.615850e-47
Msa0071480	Msa0418400	0.861107	1.294509e-63	-8.615850e-47
Msa0081620	Msa0418400	0.803464	3.442912e-49	-8.615850e-47
Msa0081940	Msa0418400	0.839053	1.993981e-57	-8.615850e-47
Msa0082050	Msa0418400	0.819451	1.153206e-52	-8.615850e-47
Msa0086560	Msa0418400	0.800895	1.162719e-48	-8.615850e-47
Msa0090510	Msa0418400	0.804935	1.700750e-49	-8.615850e-47
Msa0111080	Msa0418400	0.813141	2.973657e-51	-8.615850e-47
Msa0118540	Msa0418400	0.801357	9.355172e-49	-8.615850e-47
Msa0119440	Msa0418400	0.885870	5.599663e-72	-8.615850e-47
Msa0126880	Msa0418400	0.809906	1.500918e-50	-8.615850e-47
Msa0128430	Msa0418400	0.840554	8.107868e-58	-8.615850e-47
Msa0136630	Msa0418400	0.832483	9.211554e-56	-8.615850e-47
Msa0139670	Msa0418400	0.834240	3.360546e-56	-8.615850e-47
Msa0152560	Msa0418400	0.811394	7.155060e-51	-8.615850e-47
Msa0154920	Msa0418400	0.809589	1.755617e-50	-8.615850e-47
Msa0162690	Msa0418400	0.856285	3.568320e-62	-8.615850e-47
Msa0171980	Msa0418400	0.808777	2.621661e-50	-8.615850e-47
Msa0173960	Msa0418400	0.802532	5.364753e-49	-8.615850e-47
Msa0183910	Msa0418400	0.813012	3.174977e-51	-8.615850e-47
Msa0187490	Msa0418400	0.800606	1.332092e-48	-8.615850e-47
Msa0187830	Msa0418400	0.803772	2.972413e-49	-8.615850e-47
Msa0192640	Msa0418400	0.821567	3.770608e-53	-8.615850e-47
Msa0194010	Msa0418400	0.802832	4.652242e-49	-8.615850e-47
Msa0197530	Msa0418400	0.802118	6.527826e-49	-8.615850e-47
Msa0202930	Msa0418400	0.807694	4.460546e-50	-8.615850e-47
Msa0209080	Msa0418400	0.805662	1.197842e-49	-8.615850e-47
Msa0213430	Msa0418400	0.850491	1.640653e-60	-8.615850e-47
Msa0235880	Msa0418400	0.808865	2.509945e-50	-8.615850e-47
Msa0364790	Msa0418400	0.848065	7.771562e-60	-8.615850e-47
Msa0380600	Msa0418400	0.835044	2.109957e-56	-8.615850e-47
Msa0382370	Msa0418400	0.820743	5.836736e-53	-8.615850e-47
Msa0389210	Msa0418400	0.805201	1.496700e-49	-8.615850e-47
Msa0403490	Msa0418400	0.832230	1.064188e-55	-8.615850e-47
Msa0403770	Msa0418400	0.815888	7.338984e-52	-8.615850e-47
Msa0418400	Msa0418410	0.830496	2.842762e-55	-8.615850e-47
Msa0418400	Msa0422180	0.803752	2.999860e-49	-8.615850e-47
Msa0418400	Msa0427580	0.809392	1.935563e-50	-8.615850e-47
Msa0418400	Msa0430240	0.831405	1.700812e-55	-8.615850e-47
Msa0418400	Msa0432160	0.809609	1.738999e-50	-8.615850e-47
Msa0418400	Msa0437070	0.838703	2.456453e-57	-8.615850e-47
Msa0418400	Msa0456770	0.808025	3.792167e-50	-8.615850e-47
Msa0418400	Msa0472710	0.956510	2.489921e-114	-8.615850e-47
Msa0418400	Msa0472720	0.891276	4.604733e-74	-8.615850e-47
Msa0418400	Msa0472760	0.832145	1.117010e-55	-8.615850e-47
Msa0418400	Msa0472770	0.963392	4.983122e-122	-8.615850e-47
Msa0418400	Msa0476680	0.803838	2.879169e-49	-8.615850e-47
Msa0418400	Msa0482180	0.809204	2.124284e-50	-8.615850e-47
Msa0418400	Msa0482940	0.837273	5.730401e-57	-8.615850e-47
Msa0418400	Msa0514610	0.818334	2.069900e-52	-8.615850e-47
Msa0418400	Msa0518170	0.819187	1.324722e-52	-8.615850e-47
Msa0418400	Msa0521010	0.809122	2.212024e-50	-8.615850e-47
Msa0418400	Msa0534870	0.804537	2.060136e-49	-8.615850e-47
Msa0418400	Msa0538160	0.803206	3.893075e-49	-8.615850e-47
Msa0418400	Msa0569780	0.823420	1.398599e-53	-8.615850e-47
Msa0418400	Msa0583670	0.836312	1.007715e-56	-8.615850e-47
Msa0418400	Msa0615680	0.823716	1.192536e-53	-8.615850e-47
Msa0418400	Msa0616450	0.801672	8.060695e-49	-8.615850e-47
Msa0418400	Msa0631320	0.805794	1.124032e-49	-8.615850e-47
Msa0418400	Msa0641340	0.803610	3.210687e-49	-8.615850e-47
Msa0418400	Msa0658680	0.813361	2.661547e-51	-8.615850e-47
Msa0418400	Msa0659790	0.817257	3.622071e-52	-8.615850e-47
Msa0418400	Msa0689780	0.808034	3.776929e-50	-8.615850e-47
Msa0418400	Msa0701100	0.802973	4.350317e-49	-8.615850e-47
Msa0418400	Msa0705990	0.826305	2.917791e-54	-8.615850e-47
Msa0418400	Msa0709120	0.831652	1.478355e-55	-8.615850e-47
Msa0418400	Msa0721340	0.803591	3.240524e-49	-8.615850e-47
Msa0418400	Msa0724370	0.855235	7.228298e-62	-8.615850e-47
Msa0418400	Msa0735550	0.827719	1.339764e-54	-8.615850e-47
Msa0418400	Msa0742150	0.807538	4.813222e-50	-8.615850e-47
Msa0418400	Msa0746170	0.804757	1.852953e-49	-8.615850e-47
Msa0418400	Msa0748660	0.890029	1.425388e-73	-8.615850e-47
Msa0418400	Msa0758250	0.800267	1.561226e-48	-8.615850e-47
Msa0418400	Msa0764920	0.879087	1.658908e-69	-8.615850e-47
Msa0418400	Msa0775560	0.832982	6.927006e-56	-8.615850e-47
Msa0418400	Msa0775920	0.814646	1.385722e-51	-8.615850e-47
Msa0418400	Msa0779260	0.814185	1.752672e-51	-8.615850e-47
Msa0418400	Msa0786070	0.810548	1.091142e-50	-8.615850e-47
Msa0418400	Msa0812950	0.822181	2.717993e-53	-8.615850e-47
Msa0418400	Msa0813260	0.867718	1.113122e-65	-8.615850e-47
Msa0418400	Msa0844610	0.867910	9.655673e-66	-8.615850e-47
Msa0418400	Msa0853440	0.810912	9.104238e-51	-8.615850e-47
Msa0418400	Msa0853810	0.854943	8.788519e-62	-8.615850e-47
Msa0418400	Msa0855110	0.815902	7.286020e-52	-8.615850e-47
Msa0418400	Msa0860250	0.807423	5.090892e-50	-8.615850e-47
Msa0418400	Msa0877710	0.810498	1.118633e-50	-8.615850e-47
Msa0418400	Msa0944610	0.800164	1.638781e-48	-8.615850e-47
Msa0418400	Msa0964960	0.810623	1.051192e-50	-8.615850e-47
Msa0418400	Msa0968050	0.831682	1.453230e-55	-8.615850e-47
Msa0418400	Msa0973070	0.812541	4.024790e-51	-8.615850e-47
Msa0418400	Msa0974950	0.821114	4.796496e-53	-8.615850e-47
Msa0418400	Msa0980020	0.809557	1.783662e-50	-8.615850e-47
Msa0418400	Msa0994370	0.818488	1.909587e-52	-8.615850e-47
Msa0418400	Msa0999160	0.809559	1.782153e-50	-8.615850e-47
Msa0418400	Msa1024680	0.807580	4.716751e-50	-8.615850e-47
Msa0418400	Msa1034700	0.820364	7.133080e-53	-8.615850e-47
Msa0418400	Msa1042660	0.821735	3.446834e-53	-8.615850e-47
Msa0418400	Msa1063420	0.828608	8.178575e-55	-8.615850e-47
Msa0418400	Msa1074540	0.825809	3.828900e-54	-8.615850e-47
Msa0418400	Msa1093100	0.816970	4.202407e-52	-8.615850e-47
Msa0418400	Msa1108720	0.817650	2.953468e-52	-8.615850e-47
Msa0418400	Msa1109810	0.816341	5.812569e-52	-8.615850e-47
Msa0418400	Msa1123720	0.829257	5.696392e-55	-8.615850e-47
Msa0418400	Msa1126240	0.800365	1.491542e-48	-8.615850e-47
Msa0418400	Msa1143020	0.805484	1.305512e-49	-8.615850e-47
Msa0418400	Msa1152410	0.805155	1.530435e-49	-8.615850e-47
Msa0418400	Msa1163880	0.823265	1.520601e-53	-8.615850e-47
Msa0418400	Msa1183140	0.807064	6.065248e-50	-8.615850e-47
Msa0418400	Msa1184780	0.837157	6.134135e-57	-8.615850e-47
Msa0418400	Msa1197070	0.804129	2.504742e-49	-8.615850e-47
Msa0418400	Msa1200320	0.814964	1.178219e-51	-8.615850e-47
Msa0418400	Msa1206650	0.808885	2.486288e-50	-8.615850e-47
Msa0418400	Msa1209190	0.826993	1.999539e-54	-8.615850e-47
Msa0418400	Msa1209860	0.822183	2.715257e-53	-8.615850e-47
Msa0418400	Msa1225100	0.837214	5.930793e-57	-8.615850e-47
Msa0418400	Msa1234620	0.809331	1.995289e-50	-8.615850e-47
Msa0418400	Msa1238680	0.820683	6.026585e-53	-8.615850e-47
Msa0418400	Msa1246700	0.806043	9.963799e-50	-8.615850e-47
Msa0418400	Msa1258370	0.806045	9.950803e-50	-8.615850e-47
Msa0418400	Msa1270660	0.820323	7.288818e-53	-8.615850e-47
Msa0418400	Msa1277780	0.823032	1.723386e-53	-8.615850e-47
Msa0418400	Msa1280150	0.819005	1.457463e-52	-8.615850e-47
Msa0418400	Msa1280170	0.838136	3.439813e-57	-8.615850e-47
Msa0418400	Msa1285200	0.850714	1.420473e-60	-8.615850e-47
Msa0418400	Msa1307180	0.832160	1.107790e-55	-8.615850e-47
Msa0418400	Msa1316360	0.834671	2.619769e-56	-8.615850e-47
Msa0418400	Msa1329870	0.838377	2.981401e-57	-8.615850e-47
Msa0418400	Msa1332050	0.841904	3.580973e-58	-8.615850e-47
Msa0418400	Msa1336040	0.805856	1.090805e-49	-8.615850e-47
Msa0418400	Msa1355890	0.811440	6.993664e-51	-8.615850e-47
Msa0418400	Msa1361250	0.847224	1.323525e-59	-8.615850e-47
Msa0418400	Msa1364160	0.800175	1.630205e-48	-8.615850e-47
Msa0418400	Msa1370590	0.838010	3.707647e-57	-8.615850e-47
Msa0418400	Msa1381480	0.808582	2.885386e-50	-8.615850e-47
Msa0418400	Msa1384100	0.838936	2.137922e-57	-8.615850e-47
Msa0418400	Msa1389760	0.804127	2.508049e-49	-8.615850e-47
Msa0418400	Msa1395730	0.807113	5.922728e-50	-8.615850e-47
Msa0418400	Msa1405220	0.841516	4.532500e-58	-8.615850e-47
Msa0418400	Msa1420270	0.815872	7.398117e-52	-8.615850e-47
Msa0418400	Msa1421210	0.802740	4.861610e-49	-8.615850e-47
Msa0418400	Msa1421900	0.949495	1.134803e-107	-8.615850e-47
Msa0418400	Msa1422810	0.840252	9.723970e-58	-8.615850e-47
Msa0418400	Msa1424350	0.818757	1.659365e-52	-8.615850e-47
Msa0418400	Msa1428780	0.807679	4.493671e-50	-8.615850e-47
Msa0418400	Msa1430130	0.801417	9.095077e-49	-8.615850e-47
Msa0418400	Msa1444120	0.838036	3.649007e-57	-8.615850e-47
Msa0418400	Msa1457160	0.810202	1.296052e-50	-8.615850e-47
Msa0418400	Msa1460750	0.802381	5.762848e-49	-8.615850e-47
Msa0418400	Msa1462470	0.812608	3.892408e-51	-8.615850e-47
Msa0239060	Msa0418400	0.823837	1.116801e-53	-8.615850e-47
Msa0240270	Msa0418400	0.833566	4.954765e-56	-8.615850e-47
Msa0245540	Msa0418400	0.822261	2.604184e-53	-8.615850e-47
Msa0259440	Msa0418400	0.827374	1.621154e-54	-8.615850e-47
Msa0259580	Msa0418400	0.830299	3.175328e-55	-8.615850e-47
Msa0276950	Msa0418400	0.800283	1.549869e-48	-8.615850e-47
Msa0282720	Msa0418400	0.808683	2.745392e-50	-8.615850e-47
Msa0283420	Msa0418400	0.802759	4.816674e-49	-8.615850e-47
Msa0284240	Msa0418400	0.824279	8.795687e-54	-8.615850e-47
Msa0284450	Msa0418400	0.818408	1.991179e-52	-8.615850e-47
Msa0296790	Msa0418400	0.800315	1.526908e-48	-8.615850e-47
Msa0305620	Msa0418400	0.852186	5.444091e-61	-8.615850e-47
Msa0312910	Msa0418400	0.820013	8.580903e-53	-8.615850e-47
Msa0321690	Msa0418400	0.803767	2.979708e-49	-8.615850e-47
Msa0322680	Msa0418400	0.801549	8.543948e-49	-8.615850e-47
Msa0347750	Msa0418400	0.830575	2.717890e-55	-8.615850e-47
Msa0358110	Msa0418400	0.953795	1.244233e-111	-8.615850e-47
Msa0358120	Msa0418400	0.891002	5.908731e-74	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418400	MtrunA17_Chr3g0116141	94.964	139	7	0	1	139	1	139	9.54e-93	264
Msa0418400	MtrunA17_Chr3g0116151	94.964	139	7	0	1	139	2	140	1.08e-92	264
Msa0418400	MtrunA17_Chr4g0057641	73.723	137	36	0	3	139	4	140	6.34e-69	204
Msa0418400	MtrunA17_Chr4g0057651	75.188	133	33	0	6	138	7	139	9.00e-68	201
Msa0418400	MtrunA17_Chr4g0057661	73.529	136	36	0	3	138	4	139	1.22e-67	201
Msa0418400	MtrunA17_Chr6g0459231	55.474	137	61	0	2	138	5	141	1.62e-51	160
Msa0418400	MtrunA17_Chr7g0225921	52.174	138	65	1	2	138	3	140	6.05e-46	146
Msa0418400	MtrunA17_Chr8g0373691	48.148	135	69	1	5	138	53	187	4.76e-35	120
Msa0418400	MtrunA17_Chr7g0245911	41.667	144	74	4	6	139	48	191	3.31e-28	102
Msa0418400	MtrunA17_Chr3g0111371	38.168	131	78	1	9	139	9	136	6.45e-28	100
Msa0418400	MtrunA17_Chr5g0434951	39.394	132	76	2	9	138	8	137	3.30e-27	98.6
Msa0418400	MtrunA17_Chr8g0392951	36.567	134	85	0	6	139	25	158	6.66e-27	98.6
Msa0418400	MtrunA17_Chr1g0161211	38.806	134	81	1	6	138	47	180	1.79e-26	98.2
Msa0418400	MtrunA17_Chr1g0169581	38.346	133	79	1	9	138	8	140	9.07e-26	94.7
Msa0418400	MtrunA17_Chr8g0351681	39.161	143	78	3	6	139	50	192	1.51e-25	95.9
Msa0418400	MtrunA17_Chr8g0391691	38.462	130	79	1	6	134	37	166	7.05e-25	94.0
Msa0418400	MtrunA17_Chr6g0482731	35.821	134	85	1	6	138	27	160	4.95e-22	86.3
Msa0418400	MtrunA17_Chr4g0033601	35.714	140	81	3	6	139	6	142	1.35e-21	84.3
Msa0418400	MtrunA17_Chr5g0402331	34.586	133	86	1	7	138	50	182	2.73e-21	84.7
Msa0418400	MtrunA17_Chr1g0169621	30.380	158	82	2	9	138	8	165	1.01e-20	82.8
Msa0418400	MtrunA17_Chr5g0402361	34.586	133	86	1	7	138	222	354	3.12e-20	84.7
Msa0418400	MtrunA17_Chr5g0402361	34.328	134	84	2	7	138	50	181	2.99e-18	79.3
Msa0418400	MtrunA17_Chr4g0044961	33.846	130	85	1	9	138	61	189	5.89e-20	81.3
Msa0418400	MtrunA17_Chr1g0188171	33.094	139	82	2	6	138	13	146	1.47e-19	79.3
Msa0418400	MtrunA17_Chr7g0254731	30.935	139	85	2	6	138	13	146	2.57e-19	78.6
Msa0418400	MtrunA17_Chr5g0440931	30.216	139	86	2	6	138	13	146	4.56e-18	75.5
Msa0418400	MtrunA17_Chr6g0460211	30.216	139	86	2	6	138	13	146	4.92e-18	75.1
Msa0418400	MtrunA17_Chr1g0166281	33.071	127	84	1	13	138	20	146	6.24e-18	75.1
Msa0418400	MtrunA17_Chr3g0093271	30.496	141	87	2	4	138	62	197	1.31e-17	75.5
Msa0418400	MtrunA17_Chr7g0256171	33.333	135	87	2	8	139	8	142	2.68e-17	73.6
Msa0418400	MtrunA17_Chr7g0256701	33.577	137	85	3	8	138	76	212	6.40e-17	73.9
Msa0418400	MtrunA17_Chr8g0366401	32.090	134	79	2	9	134	21	150	1.65e-16	71.6
Msa0418400	MtrunA17_Chr1g0185001	29.630	135	95	0	4	138	11	145	2.29e-16	70.9
Msa0418400	MtrunA17_Chr5g0396261	34.234	111	70	1	30	137	2	112	9.55e-16	68.6
Msa0418400	MtrunA17_Chr4g0062221	32.331	133	87	2	9	138	15	147	1.32e-15	69.3
Msa0418400	MtrunA17_Chr3g0121191	30.827	133	81	2	7	138	95	217	2.27e-15	70.1
Msa0418400	MtrunA17_Chr7g0245371	32.857	140	81	2	13	139	32	171	3.99e-15	68.2
Msa0418400	MtrunA17_Chr8g0368681	30.827	133	89	2	9	138	16	148	7.14e-15	67.4
Msa0418400	MtrunA17_Chr5g0397101	31.387	137	89	2	5	139	371	504	2.40e-13	65.9
Msa0418400	MtrunA17_Chr8g0387671	30.657	137	90	2	5	139	371	504	3.53e-13	65.5
Msa0418400	MtrunA17_Chr2g0329371	31.884	138	89	2	7	139	66	203	4.21e-13	63.5
Msa0418400	MtrunA17_Chr4g0064231	30.519	154	84	5	7	139	66	217	5.10e-13	63.5
Msa0418400	MtrunA17_Chr6g0450921	31.250	128	87	1	13	139	37	164	7.68e-13	62.0
Msa0418400	MtrunA17_Chr0c02g0489761	27.407	135	97	1	5	139	383	516	1.23e-12	63.9
Msa0418400	MtrunA17_Chr5g0409441	27.273	132	95	1	9	139	26	157	1.76e-12	60.8
Msa0418400	MtrunA17_Chr5g0441691	27.941	136	93	2	5	138	373	505	3.08e-12	62.8
Msa0418400	MtrunA17_Chr7g0245231	30.709	127	87	1	13	138	38	164	3.61e-12	60.5
Msa0418400	MtrunA17_Chr7g0274101	29.851	134	93	1	6	138	13	146	5.19e-12	59.7
Msa0418400	MtrunA17_Chr7g0242561	30.952	126	87	0	14	139	370	495	5.84e-12	62.0
Msa0418400	MtrunA17_Chr5g0444171	29.197	137	92	2	5	139	397	530	1.54e-11	60.5
Msa0418400	MtrunA17_Chr3g0131181	29.197	137	93	2	4	139	333	466	2.45e-11	60.1
Msa0418400	MtrunA17_Chr7g0257751	30.000	140	90	2	4	139	362	497	3.42e-11	59.7
Msa0418400	MtrunA17_Chr1g0173541	28.676	136	97	0	4	139	356	491	3.83e-11	59.3
Msa0418400	MtrunA17_Chr1g0157131	26.277	137	96	2	5	139	379	512	4.30e-11	59.3
Msa0418400	MtrunA17_Chr3g0125311	29.412	153	91	4	1	138	9	159	9.13e-11	56.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418400	AT1G76650.1	47.826	138	72	0	2	139	40	177	1.41e-38	129
Msa0418400	AT1G76650.3	47.826	138	72	0	2	139	40	177	1.41e-38	129
Msa0418400	AT1G76640.1	47.552	143	68	3	2	139	19	159	6.74e-36	121
Msa0418400	AT1G76650.2	46.377	138	64	1	2	139	40	167	2.20e-35	120
Msa0418400	AT5G42380.1	45.113	133	71	1	9	139	53	185	1.33e-33	116
Msa0418400	AT3G50770.1	45.985	137	68	2	8	138	67	203	2.54e-33	116
Msa0418400	AT3G01830.1	40.876	137	76	2	6	139	12	146	1.76e-27	99.8
Msa0418400	AT1G24620.1	39.552	134	80	1	6	138	38	171	7.92e-27	99.4
Msa0418400	AT5G37770.1	35.252	139	85	1	6	139	18	156	1.67e-24	92.4
Msa0418400	AT5G37770.2	35.252	139	85	1	6	139	18	156	1.67e-24	92.4
Msa0418400	AT1G66400.1	33.088	136	88	1	6	138	16	151	1.86e-24	92.4
Msa0418400	AT1G18210.2	36.090	133	82	1	6	138	24	153	2.58e-23	89.7
Msa0418400	AT1G18210.1	36.090	133	82	1	6	138	24	153	2.58e-23	89.7
Msa0418400	AT1G73630.1	32.824	131	85	1	9	139	24	151	1.37e-21	85.1
Msa0418400	AT3G07490.1	35.211	142	89	2	1	139	1	142	4.18e-20	80.9
Msa0418400	AT1G05990.1	35.507	138	85	2	6	139	6	143	1.75e-19	79.3
Msa0418400	AT3G59440.1	34.074	135	87	1	7	139	53	187	4.86e-19	79.3
Msa0418400	AT3G22930.1	32.090	134	90	1	6	138	36	169	1.21e-18	77.8
Msa0418400	AT4G03290.1	34.014	147	87	4	1	139	1	145	1.23e-18	77.4
Msa0418400	AT2G15680.1	32.836	134	87	2	7	139	52	183	1.33e-18	78.2
Msa0418400	AT2G43290.1	32.867	143	86	3	6	139	66	207	1.39e-18	78.6
Msa0418400	AT3G56800.1	30.935	139	85	2	6	138	13	146	3.01e-18	76.3
Msa0418400	AT2G41110.1	30.935	139	85	2	6	138	13	146	3.01e-18	76.3
Msa0418400	AT2G27030.1	30.935	139	85	2	6	138	13	146	3.01e-18	76.3
Msa0418400	AT5G21274.1	30.935	139	85	2	6	138	13	146	3.04e-18	76.3
Msa0418400	AT1G66410.1	30.216	139	86	2	6	138	13	146	3.24e-18	76.3
Msa0418400	AT5G37780.1	30.216	139	86	2	6	138	13	146	3.24e-18	76.3
Msa0418400	AT5G17470.1	31.343	134	89	1	9	139	6	139	3.70e-18	75.9
Msa0418400	AT2G27030.3	30.935	139	85	2	6	138	13	146	5.81e-18	76.3
Msa0418400	AT3G43810.1	30.216	139	86	2	6	138	13	146	6.79e-18	75.1
Msa0418400	AT4G14640.1	31.343	134	91	1	6	138	14	147	1.77e-17	74.3
Msa0418400	AT4G12860.1	34.074	135	86	2	8	139	8	142	2.66e-17	73.9
Msa0418400	AT3G10190.1	32.331	133	88	2	8	138	73	205	2.77e-17	75.1
Msa0418400	AT3G43810.2	30.216	139	86	2	6	138	13	146	3.02e-17	75.1
Msa0418400	AT2G41100.7	27.815	151	91	2	6	138	67	217	4.66e-16	73.2
Msa0418400	AT2G41100.6	27.815	151	91	2	6	138	67	217	4.66e-16	73.2
Msa0418400	AT2G41100.3	27.815	151	91	2	6	138	67	217	4.66e-16	73.2
Msa0418400	AT1G18530.1	32.331	133	87	1	9	138	11	143	6.15e-16	70.5
Msa0418400	AT2G41100.4	27.815	151	91	2	6	138	102	252	7.07e-16	72.8
Msa0418400	AT2G41100.4	25.333	150	95	2	6	138	13	162	9.43e-13	64.3
Msa0418400	AT2G41100.1	27.815	151	91	2	6	138	102	252	7.07e-16	72.8
Msa0418400	AT2G41100.1	25.333	150	95	2	6	138	13	162	9.43e-13	64.3
Msa0418400	AT3G50360.1	32.812	128	85	1	13	139	35	162	8.06e-16	70.5
Msa0418400	AT2G41110.2	29.139	151	84	3	6	138	13	158	1.13e-15	69.7
Msa0418400	AT2G36180.1	28.889	135	92	2	9	139	4	138	3.24e-15	68.2
Msa0418400	AT3G03400.1	29.927	137	87	4	1	131	1	134	3.98e-15	67.8
Msa0418400	AT5G37780.2	27.273	154	86	3	6	138	13	161	3.61e-14	65.9
Msa0418400	AT4G23650.1	32.847	137	87	2	5	139	383	516	9.28e-14	67.4
Msa0418400	AT5G12180.1	30.370	135	93	1	5	139	378	511	1.95e-13	66.6
Msa0418400	AT5G37780.4	28.571	126	79	2	19	138	13	133	3.43e-13	62.8
Msa0418400	AT4G14640.2	29.752	121	84	1	19	138	9	129	3.66e-13	62.4
Msa0418400	AT5G19360.1	29.630	135	94	1	5	139	373	506	3.72e-13	65.5
Msa0418400	AT1G66410.2	28.571	126	79	2	19	138	36	156	4.42e-13	62.8
Msa0418400	AT5G37780.3	28.571	126	79	2	19	138	52	172	7.14e-13	62.8
Msa0418400	AT3G51850.1	32.540	126	85	0	14	139	368	493	7.20e-13	64.7
Msa0418400	AT1G66410.4	32.075	106	59	3	41	138	10	110	1.17e-12	60.8
Msa0418400	AT1G66410.3	32.075	106	59	3	41	138	10	110	1.17e-12	60.8
Msa0418400	AT1G32250.1	29.197	137	82	2	9	134	20	152	1.34e-12	62.0
Msa0418400	AT3G43810.4	32.075	106	59	3	41	138	10	110	1.92e-12	60.1
Msa0418400	AT3G43810.3	32.075	106	59	3	41	138	10	110	1.92e-12	60.1
Msa0418400	AT1G76040.1	29.197	137	92	2	5	139	178	311	4.29e-12	62.4
Msa0418400	AT1G76040.4	29.197	137	92	2	5	139	178	311	4.29e-12	62.4
Msa0418400	AT1G76040.2	29.197	137	92	2	5	139	416	549	4.43e-12	62.4
Msa0418400	AT3G25600.1	30.075	133	90	2	9	138	16	148	6.18e-12	60.1
Msa0418400	AT2G41090.1	26.316	133	96	1	6	138	13	143	7.66e-12	60.5
Msa0418400	AT4G37010.2	26.515	132	96	1	9	139	35	166	1.21e-11	59.3
Msa0418400	AT4G37010.1	26.515	132	96	1	9	139	31	162	1.29e-11	59.3
Msa0418400	AT3G51920.1	26.866	134	97	1	6	138	13	146	1.54e-11	58.5
Msa0418400	AT2G41410.1	29.630	135	91	3	8	138	73	207	1.54e-11	59.7
Msa0418400	AT2G31500.1	32.374	139	91	2	4	139	370	508	1.59e-11	60.8
Msa0418400	AT3G03000.1	29.104	134	93	1	4	135	19	152	3.70e-11	58.2
Msa0418400	AT3G10660.2	30.935	139	88	4	4	139	490	623	5.10e-11	59.7
Msa0418400	AT3G10660.1	30.935	139	88	4	4	139	490	623	5.10e-11	59.7
Msa0418400	AT5G12480.1	28.467	137	97	1	4	139	363	499	6.81e-11	59.3
Msa0418400	AT5G12480.2	28.467	137	97	1	4	139	269	405	6.88e-11	58.9

Find 27 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGCATCCTCTTCAAACTCTT+TGG	0.279285	3_2:+66164622	None:intergenic
GGAGGAATTAATTGCTTTGA+TGG	0.320451	3_2:-66164728	Msa0418400:CDS
TTTGTTGAAAGAAGCTGAAA+TGG	0.376240	3_2:-66164794	Msa0418400:CDS
TGGTGATGGATATTTGAGTT+TGG	0.381496	3_2:-66164749	Msa0418400:CDS
GAAGAGGATGCTTAAGAAGA+TGG	0.388089	3_2:-66164611	Msa0418400:CDS
AGACAAAGGCTGGGAGTAAT+GGG	0.401953	3_2:-66164826	Msa0418400:CDS
AGCCTTTGTCTTAGCTCTGC+TGG	0.405548	3_2:+66164838	None:intergenic
AGCAGAGCTAAGACAAAGGC+TGG	0.426380	3_2:-66164836	Msa0418400:CDS
TTAATTGCTTTGATGGAGGA+AGG	0.458662	3_2:-66164721	Msa0418400:CDS
AAGACAAAGGCTGGGAGTAA+TGG	0.460108	3_2:-66164827	Msa0418400:CDS
AGAAGCTGAAATGGCTATTG+AGG	0.481748	3_2:-66164785	Msa0418400:CDS
AAGAGGATGCTTAAGAAGAT+GGG	0.484014	3_2:-66164610	Msa0418400:CDS
TGGAGAGGAACAAAAGTTGA+AGG	0.498848	3_2:-66164698	Msa0418400:CDS
ATTGCTTTGATGGAGGAAGG+TGG	0.541567	3_2:-66164718	Msa0418400:CDS
TGATGGATATTTGAGTTTGG+AGG	0.566788	3_2:-66164746	Msa0418400:CDS
GGAATTAATTGCTTTGATGG+AGG	0.567051	3_2:-66164725	Msa0418400:CDS
TGAAATGGCTATTGAGGCAA+TGG	0.572267	3_2:-66164779	Msa0418400:CDS
TGATGAAGATGGTGATGGAA+AGG	0.579290	3_2:-66164866	Msa0418400:CDS
TAACACCAAAGAGTTTGAAG+AGG	0.591633	3_2:-66164627	Msa0418400:CDS
CACCAGCAGAGCTAAGACAA+AGG	0.624826	3_2:-66164840	Msa0418400:CDS
GCAGAGCTAAGACAAAGGCT+GGG	0.627677	3_2:-66164835	Msa0418400:CDS
TTTGATGGAGGAAGGTGGAG+AGG	0.629126	3_2:-66164713	Msa0418400:CDS
ATTGAGGCAATGGATTCAGA+TGG	0.638749	3_2:-66164769	Msa0418400:CDS
ATGTATGATAGTGAGAAGTG+TGG	0.644233	3_2:-66164655	Msa0418400:CDS
GCAATGGATTCAGATGGTGA+TGG	0.644671	3_2:-66164763	Msa0418400:CDS
TTATAAAAGATGAAGAACGC+GGG	0.655567	3_2:-66164913	None:intergenic
ATTATAAAAGATGAAGAACG+CGG	0.665781	3_2:-66164914	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTAAACATTTTGATTTGAA+TGG	-	chr3_2:66164858-66164877	Msa0418400:CDS	15.0%
!!!	TTAAACATTTTGATTTGAAT+GGG	-	chr3_2:66164859-66164878	Msa0418400:CDS	15.0%
!!!	TAAACATTTTGATTTGAATG+GGG	-	chr3_2:66164860-66164879	Msa0418400:CDS	20.0%
!!!	CTTAGATATTTTGATGAAGA+TGG	-	chr3_2:66164534-66164553	Msa0418400:CDS	25.0%
!!!	TATTTTGATGAAGATGGTGA+TGG	-	chr3_2:66164540-66164559	Msa0418400:CDS	30.0%
	TTTGTTGAAAGAAGCTGAAA+TGG	-	chr3_2:66164617-66164636	Msa0418400:CDS	30.0%
!!	TGGTGATGGATATTTGAGTT+TGG	-	chr3_2:66164662-66164681	Msa0418400:CDS	35.0%
!	TGATGGATATTTGAGTTTGG+AGG	-	chr3_2:66164665-66164684	Msa0418400:CDS	35.0%
	GGAGGAATTAATTGCTTTGA+TGG	-	chr3_2:66164683-66164702	Msa0418400:CDS	35.0%
	GGAATTAATTGCTTTGATGG+AGG	-	chr3_2:66164686-66164705	Msa0418400:CDS	35.0%
	TTAATTGCTTTGATGGAGGA+AGG	-	chr3_2:66164690-66164709	Msa0418400:CDS	35.0%
!	ATGTATGATAGTGAGAAGTG+TGG	-	chr3_2:66164756-66164775	Msa0418400:CDS	35.0%
	TAACACCAAAGAGTTTGAAG+AGG	-	chr3_2:66164784-66164803	Msa0418400:CDS	35.0%
	AAGAGGATGCTTAAGAAGAT+GGG	-	chr3_2:66164801-66164820	Msa0418400:CDS	35.0%
!!!	CATTTTGATTTGAATGGGGA+TGG	-	chr3_2:66164864-66164883	Msa0418400:CDS	35.0%
!!	TGATGAAGATGGTGATGGAA+AGG	-	chr3_2:66164545-66164564	Msa0418400:CDS	40.0%
	AGAAGCTGAAATGGCTATTG+AGG	-	chr3_2:66164626-66164645	Msa0418400:CDS	40.0%
	TGAAATGGCTATTGAGGCAA+TGG	-	chr3_2:66164632-66164651	Msa0418400:CDS	40.0%
!	ATTGAGGCAATGGATTCAGA+TGG	-	chr3_2:66164642-66164661	Msa0418400:CDS	40.0%
	TGGAGAGGAACAAAAGTTGA+AGG	-	chr3_2:66164713-66164732	Msa0418400:CDS	40.0%
	AGCATCCTCTTCAAACTCTT+TGG	+	chr3_2:66164792-66164811	None:intergenic	40.0%
	GAAGAGGATGCTTAAGAAGA+TGG	-	chr3_2:66164800-66164819	Msa0418400:CDS	40.0%
	AAGACAAAGGCTGGGAGTAA+TGG	-	chr3_2:66164584-66164603	Msa0418400:CDS	45.0%
	AGACAAAGGCTGGGAGTAAT+GGG	-	chr3_2:66164585-66164604	Msa0418400:CDS	45.0%
!	GCAATGGATTCAGATGGTGA+TGG	-	chr3_2:66164648-66164667	Msa0418400:CDS	45.0%
	ATTGCTTTGATGGAGGAAGG+TGG	-	chr3_2:66164693-66164712	Msa0418400:CDS	45.0%
	CACCAGCAGAGCTAAGACAA+AGG	-	chr3_2:66164571-66164590	Msa0418400:CDS	50.0%
!!	AGCCTTTGTCTTAGCTCTGC+TGG	+	chr3_2:66164576-66164595	None:intergenic	50.0%
	AGCAGAGCTAAGACAAAGGC+TGG	-	chr3_2:66164575-66164594	Msa0418400:CDS	50.0%
	GCAGAGCTAAGACAAAGGCT+GGG	-	chr3_2:66164576-66164595	Msa0418400:CDS	50.0%
	TTTGATGGAGGAAGGTGGAG+AGG	-	chr3_2:66164698-66164717	Msa0418400:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	66164507	66164926	66164507	ID=Msa0418400;Name=Msa0418400
chr3_2	mRNA	66164507	66164926	66164507	ID=Msa0418400-mRNA-1;Parent=Msa0418400;Name=Msa0418400-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|139
chr3_2	exon	66164507	66164926	66164507	ID=Msa0418400-mRNA-1:exon:15067;Parent=Msa0418400-mRNA-1
chr3_2	CDS	66164507	66164926	66164507	ID=Msa0418400-mRNA-1:cds;Parent=Msa0418400-mRNA-1

Gene Sequence

>Msa0418400

ATGAAGAACGCGGGATTCGAGCATGTTCTTAGATATTTTGATGAAGATGGTGATGGAAAGGTTTCACCAGCAGAGCTAAGACAAAGGCTGGGAGTAATGGGAGAAGAGATTTTGTTGAAAGAAGCTGAAATGGCTATTGAGGCAATGGATTCAGATGGTGATGGATATTTGAGTTTGGAGGAATTAATTGCTTTGATGGAGGAAGGTGGAGAGGAACAAAAGTTGAAGGATTTGAGAGATGCATTTGAGATGTATGATAGTGAGAAGTGTGGATTTATAACACCAAAGAGTTTGAAGAGGATGCTTAAGAAGATGGGTGAGTCTAAGTCTATTGATGAATGTAAAGCTATGATTAAACATTTTGATTTGAATGGGGATGGTGTGCTTAGCTTTGATGAATTCACAGTAATGATGCAGTGA

Protein sequence

>Msa0418400

MKNAGFEHVLRYFDEDGDGKVSPAELRQRLGVMGEEILLKEAEMAIEAMDSDGDGYLSLEELIALMEEGGEEQKLKDLRDAFEMYDSEKCGFITPKSLKRMLKKMGESKSIDECKAMIKHFDLNGDGVLSFDEFTVMMQ*