AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1199690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1199690 MtrunA17_Chr8g0369191 90.923 639 26 4 1 611 1 635 0.0 1021
Msa1199690 MtrunA17_Chr3g0133891 50.151 662 252 13 24 611 288 945 1.65e-171 512
Msa1199690 MtrunA17_Chr1g0153431 46.334 682 281 15 3 610 246 916 5.13e-149 453
Msa1199690 MtrunA17_Chr3g0102681 28.836 593 321 16 3 528 13 571 6.82e-22 100
Msa1199690 MtrunA17_Chr4g0013151 28.736 261 171 2 284 529 229 489 3.45e-18 88.6
Msa1199690 MtrunA17_Chr7g0244501 24.275 276 189 2 285 543 177 449 4.54e-12 68.9
Msa1199690 MtrunA17_Chr5g0446731 25.480 573 353 11 27 536 23 584 2.34e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1199690 AT2G26570.1 45.970 670 282 13 7 608 148 805 2.11e-152 459
Msa1199690 AT2G26570.2 45.970 670 282 13 7 608 148 805 2.11e-152 459
Msa1199690 AT4G33390.1 44.444 666 265 12 16 608 145 778 9.43e-136 415
Msa1199690 AT5G42880.1 37.109 671 327 13 3 611 114 751 2.13e-85 282
Msa1199690 AT1G45545.2 35.614 643 306 13 26 607 155 750 2.66e-75 255
Msa1199690 AT1G45545.1 35.614 643 306 13 26 607 154 749 2.90e-75 255
Msa1199690 AT5G55860.1 27.753 663 329 27 27 582 22 641 2.26e-13 73.6
Msa1199690 AT2G38370.2 28.412 359 204 9 222 559 91 417 1.43e-11 67.8
Msa1199690 AT2G38370.1 27.913 369 213 9 212 559 64 400 1.79e-11 67.4

Find 103 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCTCCAAAACAGAAAT+TGG 0.164077 8_1:+51917268 None:intergenic
AGCAAGATTGGACATGAATT+TGG 0.194459 8_1:-51916640 Msa1199690:CDS
GGCACTCCCAATTTCTGTTT+TGG 0.218946 8_1:-51917275 Msa1199690:five_prime_UTR
TCCAATTCTTCAGCTGTATT+TGG 0.232993 8_1:+51916613 None:intergenic
TTAAGACCAGAATCAGAATT+TGG 0.238508 8_1:+51917143 None:intergenic
TTCCTTCTTTCTTTCTTCAT+TGG 0.249061 8_1:+51915985 None:intergenic
ATTATGTATTATAATTTATA+TGG 0.252596 8_1:+51917603 None:intergenic
CTGCTCCTCAATTCCAATTC+AGG 0.253209 8_1:-51917523 Msa1199690:intron
AGAGGAAGATGCTTCCAATT+TGG 0.255053 8_1:+51916069 None:intergenic
AACTTGAATTGCAGACATTT+TGG 0.268313 8_1:-51917299 Msa1199690:intron
ACTTCACCAAATTCTGATTC+TGG 0.286767 8_1:-51917149 Msa1199690:CDS
TCAACATTATTATTATTATC+AGG 0.289701 8_1:+51914855 None:intergenic
ATTTATATGGTGCATGTCAT+AGG 0.295214 8_1:+51917616 None:intergenic
CCAACCTGACTAGGGGATTC+TGG 0.296780 8_1:+51917179 None:intergenic
GAGGAGTTTGGTGAAGAATT+TGG 0.298766 8_1:+51914939 None:intergenic
GCTGCTGCTTGAAGTTTCTT+AGG 0.302328 8_1:+51915719 None:intergenic
AACCGAGTTAGCAGCATATA+TGG 0.303826 8_1:-51916029 Msa1199690:CDS
TTGTGCTTTGGCTTCAAAAC+TGG 0.316051 8_1:+51916456 None:intergenic
ACCAAATACAGCTGAAGAAT+TGG 0.316647 8_1:-51916614 Msa1199690:CDS
TTCAACCTCAAGTTGTGCTT+TGG 0.326913 8_1:+51916444 None:intergenic
GAATGAAGCAAAAGAGATTA+TGG 0.343738 8_1:-51915750 Msa1199690:CDS
GTGATTAATCCAACCTGAAT+TGG 0.351237 8_1:+51917510 None:intergenic
CAATGTAGCTAAGTTTGCTT+TGG 0.351945 8_1:+51915616 None:intergenic
TACATAATATTTATTCTAAT+AGG 0.360152 8_1:-51917588 Msa1199690:five_prime_UTR
AAGAGTTCTCAAATCCAAAT+TGG 0.363045 8_1:-51916083 Msa1199690:CDS
TAGTGCTGCAGTTTCGGAAT+TGG 0.366822 8_1:-51916410 Msa1199690:CDS
AAGAATTACATTCACTTGCT+TGG 0.370848 8_1:+51914738 None:intergenic
AATGCATAGTGCTGCAGTTT+CGG 0.372224 8_1:-51916416 Msa1199690:CDS
AGCTTCAATATTGCTTCAAT+CGG 0.394447 8_1:-51915903 Msa1199690:CDS
AAAGATGCTGTGTCCAAGTT+TGG 0.401818 8_1:-51917083 Msa1199690:CDS
GAAATCATTGTTTCCTTCAA+AGG 0.403794 8_1:-51914793 Msa1199690:CDS
AGCAGTTTGAGCTAATGATT+TGG 0.404652 8_1:+51915679 None:intergenic
GGTGAACAGAGAAGCAAGAT+TGG 0.407271 8_1:-51916652 Msa1199690:intron
CCTCCAGACTTTGAGTTCTA+CGG 0.418065 8_1:+51917039 None:intergenic
GTGTAGAAAGAGATGAGCTT+CGG 0.429173 8_1:-51916546 Msa1199690:CDS
ATCCACTATTCCTCCAAACT+TGG 0.437962 8_1:+51917070 None:intergenic
AATAATAATAATGTTGAAGC+TGG 0.438316 8_1:-51914849 Msa1199690:CDS
AAGAACATGACAACCTTTGA+AGG 0.442645 8_1:+51914780 None:intergenic
GGAATCTGAATTGAGAAGCT+TGG 0.445293 8_1:-51915147 Msa1199690:CDS
AGGAGTAGTAGTTGCAGTAG+TGG 0.447868 8_1:+51914881 None:intergenic
TGTAGAAAGAGATGAGCTTC+GGG 0.448050 8_1:-51916545 Msa1199690:CDS
GTCCAAGTTTGGAGGAATAG+TGG 0.450809 8_1:-51917072 Msa1199690:CDS
GAGCAGATTTCATATTTAAG+AGG 0.452634 8_1:-51917253 Msa1199690:five_prime_UTR
TGACTAGGGGATTCTGGTTG+TGG 0.452920 8_1:+51917185 None:intergenic
CTCCAGACTTTGAGTTCTAC+GGG 0.460875 8_1:+51917040 None:intergenic
TTCGACTCAAACGGCGCACA+TGG 0.465039 8_1:-51916218 Msa1199690:CDS
AACCCGTAGAACTCAAAGTC+TGG 0.465425 8_1:-51917042 Msa1199690:CDS
GATGATGCAGAAGAAGAAAG+TGG 0.472241 8_1:+51917555 None:intergenic
TCTGCTCCAAAACAGAAATT+GGG 0.474683 8_1:+51917269 None:intergenic
GTTTCATCACCAACCTGACT+AGG 0.491177 8_1:+51917170 None:intergenic
TCTTCACCAAACTCCTCAAA+GGG 0.491233 8_1:-51914933 Msa1199690:CDS
GAAGAAGAAAGTGGGAGAGA+TGG 0.492962 8_1:+51917564 None:intergenic
TCCAACCTGAATTGGAATTG+AGG 0.495366 8_1:+51917518 None:intergenic
GTAGTAGAAGTAGTATCTAA+AGG 0.496633 8_1:+51914903 None:intergenic
GCTAAGTAAGAGAACTCAAA+AGG 0.497779 8_1:-51915228 Msa1199690:CDS
ACTTGTGATTCGCAAAATTG+AGG 0.498578 8_1:-51916506 Msa1199690:CDS
CTGAATTGGAATTGAGGAGC+AGG 0.499043 8_1:+51917524 None:intergenic
GATTCGCAAAATTGAGGAGC+TGG 0.499740 8_1:-51916500 Msa1199690:CDS
ACAACCAGAATCCCCTAGTC+AGG 0.501202 8_1:-51917183 Msa1199690:CDS
CAAAGCAAACTTAGCTACAT+TGG 0.504952 8_1:-51915615 Msa1199690:CDS
GTCATTGATTTCGACTCAAA+CGG 0.505905 8_1:-51916227 Msa1199690:CDS
AACCAATGAAGAAAGAAAGA+AGG 0.513814 8_1:-51915987 Msa1199690:CDS
TAAAGATTCAATCAAAGCAT+TGG 0.524472 8_1:-51915339 Msa1199690:intron
ATGATGCAGAAGAAGAAAGT+GGG 0.525480 8_1:+51917556 None:intergenic
TGAAGAGCTGTGTGTAAGAA+GGG 0.527955 8_1:-51915105 Msa1199690:CDS
GAAGCCGAGGAACAAGCATC+AGG 0.528541 8_1:-51916196 Msa1199690:CDS
TTCTTCACCAAACTCCTCAA+AGG 0.531197 8_1:-51914934 Msa1199690:CDS
TGAACTCGAACAATCAGAAA+AGG 0.533244 8_1:-51916140 Msa1199690:CDS
TTCCATATATGCTGCTAACT+CGG 0.533266 8_1:+51916027 None:intergenic
GACGCCTGATGCTTGTTCCT+CGG 0.540978 8_1:+51916192 None:intergenic
CGTTACTGTTGAGGAAATGA+AGG 0.543246 8_1:+51917642 None:intergenic
GGATGCTGCAACAGCCTCCT+CGG 0.546548 8_1:+51916306 None:intergenic
AGTTTGGAGGAATAGTGGAT+TGG 0.547175 8_1:-51917067 Msa1199690:CDS
GGAGGCTGTTGCAGCATCCA+AGG 0.547768 8_1:-51916302 Msa1199690:CDS
TTATTATTATTATCAGGAGT+AGG 0.549103 8_1:+51914861 None:intergenic
TTTATATGGTGCATGTCATA+GGG 0.554496 8_1:+51917617 None:intergenic
AGAACAAAGAAAAGCTAATG+AGG 0.557400 8_1:-51914991 Msa1199690:CDS
TTTCAAATCAAGCAACAAAG+AGG 0.562874 8_1:+51916051 None:intergenic
AGCTGAGTTAATTGCAACAA+AGG 0.564213 8_1:-51916251 Msa1199690:CDS
AGAAAGAAAGAAGGAACTAG+AGG 0.565108 8_1:-51915978 Msa1199690:CDS
TTTCATCACCAACCTGACTA+GGG 0.566617 8_1:+51917171 None:intergenic
CATAGGGTACGTTACTGTTG+AGG 0.577449 8_1:+51917633 None:intergenic
TAGAACAAGAGTTGAGAACA+TGG 0.577986 8_1:-51915025 Msa1199690:CDS
ATGAAGAGCTGTGTGTAAGA+AGG 0.583925 8_1:-51915106 Msa1199690:CDS
GATGCTGTGTCCAAGTTTGG+AGG 0.587154 8_1:-51917080 Msa1199690:CDS
TAAGAGAACTCAAAAGGCTG+AGG 0.589786 8_1:-51915222 Msa1199690:CDS
CCAGAATCCCCTAGTCAGGT+TGG 0.590353 8_1:-51917179 Msa1199690:CDS
GAAGCTGGACCAGCTTCAGA+TGG 0.594197 8_1:-51914834 Msa1199690:CDS
AATGCTGAGAAAGCTGCAGA+AGG 0.595842 8_1:-51915059 Msa1199690:CDS
CAAAACTGGCTTCATCTGCA+AGG 0.603066 8_1:+51916470 None:intergenic
GCTTCGGGTAAAAGAAGAAG+TGG 0.603179 8_1:-51916530 Msa1199690:CDS
TGCAAATTCACAGATTGAGA+TGG 0.603818 8_1:-51915174 Msa1199690:CDS
GCATCTTTGACAGATTTCAA+AGG 0.612629 8_1:+51917098 None:intergenic
AACGGCGCACATGGAAGCCG+AGG 0.615182 8_1:-51916209 Msa1199690:CDS
TTCACAGATTGAGATGGCAA+AGG 0.617923 8_1:-51915168 Msa1199690:CDS
TTCATCACCAACCTGACTAG+GGG 0.621675 8_1:+51917172 None:intergenic
TGAAGCCAAAGCACAACTTG+AGG 0.623555 8_1:-51916449 Msa1199690:CDS
AGAAGTGAATCTGCTAGAGG+AGG 0.628946 8_1:-51915314 Msa1199690:CDS
GAGAGAAGTGAATCTGCTAG+AGG 0.632598 8_1:-51915317 Msa1199690:CDS
TGCAGCTATCATCAATGCCG+AGG 0.640751 8_1:-51916323 Msa1199690:CDS
TACTGTTGAGGAAATGAAGG+AGG 0.653923 8_1:+51917645 None:intergenic
CCGTAGAACTCAAAGTCTGG+AGG 0.690375 8_1:-51917039 Msa1199690:intron
AGCTATCATCAATGCCGAGG+AGG 0.705985 8_1:-51916320 Msa1199690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAATATTTATTCTAAT+AGG - chr8_1:51914857-51914876 Msa1199690:CDS 10.0%
!!! ATGTTATACAATAATATTTT+GGG - chr8_1:51915023-51915042 Msa1199690:CDS 10.0%
!! AAATATTATTGTATAACATG+TGG + chr8_1:51915022-51915041 None:intergenic 15.0%
!!! CATGTTATACAATAATATTT+TGG - chr8_1:51915022-51915041 Msa1199690:CDS 15.0%
!!! TGTTATACAATAATATTTTG+GGG - chr8_1:51915024-51915043 Msa1199690:CDS 15.0%
!! AACTTCATAAAATCTTATAA+TGG - chr8_1:51915554-51915573 Msa1199690:intron 15.0%
!!! CTAACTTTATTTCTAATAAT+AGG - chr8_1:51917056-51917075 Msa1199690:CDS 15.0%
!! TCAACATTATTATTATTATC+AGG + chr8_1:51917593-51917612 None:intergenic 15.0%
!!! TACATTTTTCTTCTTAGTTT+TGG - chr8_1:51915474-51915493 Msa1199690:intron 20.0%
!! TTATGAAGTTATATATGACT+AGG + chr8_1:51915544-51915563 None:intergenic 20.0%
!! AAAAAGAATTAGACTCTTTA+AGG - chr8_1:51916067-51916086 Msa1199690:CDS 20.0%
!!! AACTGATAAAAAAGTGATTT+TGG - chr8_1:51916914-51916933 Msa1199690:intron 20.0%
!!! AAAGAGTTATTATGTGATTT+TGG - chr8_1:51916981-51917000 Msa1199690:intron 20.0%
!!! AAGTGATTTTTTTTCACAAA+TGG - chr8_1:51917019-51917038 Msa1199690:intron 20.0%
!!! AGTGATTTTTTTTCACAAAT+GGG - chr8_1:51917020-51917039 Msa1199690:intron 20.0%
!! TTATTATTATTATCAGGAGT+AGG + chr8_1:51917587-51917606 None:intergenic 20.0%
!! AATAATAATAATGTTGAAGC+TGG - chr8_1:51917596-51917615 Msa1199690:five_prime_UTR 20.0%
! CATATTATATGCATGTAAGA+AGG + chr8_1:51914977-51914996 None:intergenic 25.0%
! CTTCTTACATGCATATAATA+TGG - chr8_1:51914975-51914994 Msa1199690:CDS 25.0%
!!! TTTTTTGTGTCTTTTCAAAG+TGG + chr8_1:51915220-51915239 None:intergenic 25.0%
! TAAAGCAAGAATACAATTTG+AGG + chr8_1:51915454-51915473 None:intergenic 25.0%
! AAAAAAAGTCATGTGGTTTA+GGG + chr8_1:51915747-51915766 None:intergenic 25.0%
! AAAAAAAAGTCATGTGGTTT+AGG + chr8_1:51915748-51915767 None:intergenic 25.0%
! AGAAAGAAAAAAAAGTCATG+TGG + chr8_1:51915754-51915773 None:intergenic 25.0%
!!! TCTTTCTGTTTTGTTCTTTT+TGG - chr8_1:51915771-51915790 Msa1199690:CDS 25.0%
!!! CTTTCTGTTTTGTTCTTTTT+GGG - chr8_1:51915772-51915791 Msa1199690:CDS 25.0%
! CATTGAAAAAACAACTAATG+AGG - chr8_1:51916503-51916522 Msa1199690:CDS 25.0%
!! CTTTTTCTTCACTTTCTTTA+AGG + chr8_1:51916599-51916618 None:intergenic 25.0%
!! TGCTAAAGTTTCTGAAAAAT+TGG - chr8_1:51917082-51917101 Msa1199690:CDS 25.0%
! TAAAGATTCAATCAAAGCAT+TGG - chr8_1:51917106-51917125 Msa1199690:CDS 25.0%
TTTATATGGTGCATGTCATA+GGG + chr8_1:51914831-51914850 None:intergenic 30.0%
ATTTATATGGTGCATGTCAT+AGG + chr8_1:51914832-51914851 None:intergenic 30.0%
! TTTGGGGCATTAAAGATTAA+AGG - chr8_1:51915040-51915059 Msa1199690:CDS 30.0%
! TTGGGGCATTAAAGATTAAA+GGG - chr8_1:51915041-51915060 Msa1199690:CDS 30.0%
! AAAATTTTCACAATGCAGGA+TGG + chr8_1:51915070-51915089 None:intergenic 30.0%
! GATGAAAATTTTCACAATGC+AGG + chr8_1:51915074-51915093 None:intergenic 30.0%
! AACTTGAATTGCAGACATTT+TGG - chr8_1:51915146-51915165 Msa1199690:CDS 30.0%
GAGCAGATTTCATATTTAAG+AGG - chr8_1:51915192-51915211 Msa1199690:CDS 30.0%
TTAAGACCAGAATCAGAATT+TGG + chr8_1:51915305-51915324 None:intergenic 30.0%
TTATATATGACTAGGACTAG+GGG + chr8_1:51915536-51915555 None:intergenic 30.0%
GTTATATATGACTAGGACTA+GGG + chr8_1:51915537-51915556 None:intergenic 30.0%
AGTTATATATGACTAGGACT+AGG + chr8_1:51915538-51915557 None:intergenic 30.0%
!! TAAATAGCGGATATATAGCA+TGG - chr8_1:51915588-51915607 Msa1199690:intron 30.0%
!! TAGTTGTTTCTCATTCTTTG+AGG - chr8_1:51915697-51915716 Msa1199690:CDS 30.0%
! GAGTATGATTTTATAGTGAG+CGG - chr8_1:51916093-51916112 Msa1199690:CDS 30.0%
AAGAGTTCTCAAATCCAAAT+TGG - chr8_1:51916362-51916381 Msa1199690:CDS 30.0%
TTTCAAATCAAGCAACAAAG+AGG + chr8_1:51916397-51916416 None:intergenic 30.0%
AACCAATGAAGAAAGAAAGA+AGG - chr8_1:51916458-51916477 Msa1199690:CDS 30.0%
TTCCTTCTTTCTTTCTTCAT+TGG + chr8_1:51916463-51916482 None:intergenic 30.0%
AGCTTCAATATTGCTTCAAT+CGG - chr8_1:51916542-51916561 Msa1199690:CDS 30.0%
GAATGAAGCAAAAGAGATTA+TGG - chr8_1:51916695-51916714 Msa1199690:intron 30.0%
AGAACAAAGAAAAGCTAATG+AGG - chr8_1:51917454-51917473 Msa1199690:intron 30.0%
GTAGTAGAAGTAGTATCTAA+AGG + chr8_1:51917545-51917564 None:intergenic 30.0%
GAAATCATTGTTTCCTTCAA+AGG - chr8_1:51917652-51917671 Msa1199690:five_prime_UTR 30.0%
AAATTAAAAATGGAGGGACG+AGG - chr8_1:51914753-51914772 Msa1199690:CDS 35.0%
ATGATGCAGAAGAAGAAAGT+GGG + chr8_1:51914892-51914911 None:intergenic 35.0%
GTGATTAATCCAACCTGAAT+TGG + chr8_1:51914938-51914957 None:intergenic 35.0%
! TGGGGCATTAAAGATTAAAG+GGG - chr8_1:51915042-51915061 Msa1199690:CDS 35.0%
! TTGAATTGCAGACATTTTGG+TGG - chr8_1:51915149-51915168 Msa1199690:CDS 35.0%
TCTGCTCCAAAACAGAAATT+GGG + chr8_1:51915179-51915198 None:intergenic 35.0%
ATCTGCTCCAAAACAGAAAT+TGG + chr8_1:51915180-51915199 None:intergenic 35.0%
ACTTCACCAAATTCTGATTC+TGG - chr8_1:51915296-51915315 Msa1199690:CDS 35.0%
GCATCTTTGACAGATTTCAA+AGG + chr8_1:51915350-51915369 None:intergenic 35.0%
AGCAAGATTGGACATGAATT+TGG - chr8_1:51915805-51915824 Msa1199690:CDS 35.0%
ACCAAATACAGCTGAAGAAT+TGG - chr8_1:51915831-51915850 Msa1199690:CDS 35.0%
TCCAATTCTTCAGCTGTATT+TGG + chr8_1:51915835-51915854 None:intergenic 35.0%
ACTTGTGATTCGCAAAATTG+AGG - chr8_1:51915939-51915958 Msa1199690:CDS 35.0%
! ATGATTTTATAGTGAGCGGA+AGG - chr8_1:51916097-51916116 Msa1199690:CDS 35.0%
! TGATTTTATAGTGAGCGGAA+GGG - chr8_1:51916098-51916117 Msa1199690:CDS 35.0%
AGCTGAGTTAATTGCAACAA+AGG - chr8_1:51916194-51916213 Msa1199690:CDS 35.0%
!! GTCATTGATTTCGACTCAAA+CGG - chr8_1:51916218-51916237 Msa1199690:CDS 35.0%
TGAACTCGAACAATCAGAAA+AGG - chr8_1:51916305-51916324 Msa1199690:CDS 35.0%
TTCCATATATGCTGCTAACT+CGG + chr8_1:51916421-51916440 None:intergenic 35.0%
AGAAAGAAAGAAGGAACTAG+AGG - chr8_1:51916467-51916486 Msa1199690:CDS 35.0%
AGCAGTTTGAGCTAATGATT+TGG + chr8_1:51916769-51916788 None:intergenic 35.0%
! CAATGTAGCTAAGTTTGCTT+TGG + chr8_1:51916832-51916851 None:intergenic 35.0%
CAAAGCAAACTTAGCTACAT+TGG - chr8_1:51916830-51916849 Msa1199690:intron 35.0%
CAAGCAACGCAAAATGAAAT+AGG - chr8_1:51916864-51916883 Msa1199690:intron 35.0%
GCTAAGTAAGAGAACTCAAA+AGG - chr8_1:51917217-51917236 Msa1199690:five_prime_UTR 35.0%
TGCAAATTCACAGATTGAGA+TGG - chr8_1:51917271-51917290 Msa1199690:five_prime_UTR 35.0%
TAGAACAAGAGTTGAGAACA+TGG - chr8_1:51917420-51917439 Msa1199690:intron 35.0%
! TAAAGGAGATTTTCCCTTTG+AGG + chr8_1:51917528-51917547 None:intergenic 35.0%
!! TTTTTCTTTCCATCTGAAGC+TGG + chr8_1:51917623-51917642 None:intergenic 35.0%
AAGAACATGACAACCTTTGA+AGG + chr8_1:51917668-51917687 None:intergenic 35.0%
TACTGTTGAGGAAATGAAGG+AGG + chr8_1:51914803-51914822 None:intergenic 40.0%
CGTTACTGTTGAGGAAATGA+AGG + chr8_1:51914806-51914825 None:intergenic 40.0%
GATGATGCAGAAGAAGAAAG+TGG + chr8_1:51914893-51914912 None:intergenic 40.0%
TCCTCAATTCCAATTCAGGT+TGG - chr8_1:51914926-51914945 Msa1199690:CDS 40.0%
TCCAACCTGAATTGGAATTG+AGG + chr8_1:51914930-51914949 None:intergenic 40.0%
TTTCATCACCAACCTGACTA+GGG + chr8_1:51915277-51915296 None:intergenic 40.0%
AAAGATGCTGTGTCCAAGTT+TGG - chr8_1:51915362-51915381 Msa1199690:intron 40.0%
ATCCACTATTCCTCCAAACT+TGG + chr8_1:51915378-51915397 None:intergenic 40.0%
!! AGTTTGGAGGAATAGTGGAT+TGG - chr8_1:51915378-51915397 Msa1199690:intron 40.0%
! GGACTAGTGTCGTTAAATAG+CGG - chr8_1:51915575-51915594 Msa1199690:intron 40.0%
GTGTAGAAAGAGATGAGCTT+CGG - chr8_1:51915899-51915918 Msa1199690:CDS 40.0%
TGTAGAAAGAGATGAGCTTC+GGG - chr8_1:51915900-51915919 Msa1199690:CDS 40.0%
! TTGTGCTTTGGCTTCAAAAC+TGG + chr8_1:51915992-51916011 None:intergenic 40.0%
! TTCAACCTCAAGTTGTGCTT+TGG + chr8_1:51916004-51916023 None:intergenic 40.0%
AATGCATAGTGCTGCAGTTT+CGG - chr8_1:51916029-51916048 Msa1199690:CDS 40.0%
!!! CACTGCTTTTTCAATCTCCT+TGG + chr8_1:51916163-51916182 None:intergenic 40.0%
CAAGGAGATTGAAAAAGCAG+TGG - chr8_1:51916161-51916180 Msa1199690:CDS 40.0%
AGAGGAAGATGCTTCCAATT+TGG + chr8_1:51916379-51916398 None:intergenic 40.0%
AACCGAGTTAGCAGCATATA+TGG - chr8_1:51916416-51916435 Msa1199690:CDS 40.0%
TAAGAGAACTCAAAAGGCTG+AGG - chr8_1:51917223-51917242 Msa1199690:five_prime_UTR 40.0%
TTCACAGATTGAGATGGCAA+AGG - chr8_1:51917277-51917296 Msa1199690:five_prime_UTR 40.0%
GGAATCTGAATTGAGAAGCT+TGG - chr8_1:51917298-51917317 Msa1199690:intron 40.0%
ATGAAGAGCTGTGTGTAAGA+AGG - chr8_1:51917339-51917358 Msa1199690:intron 40.0%
TGAAGAGCTGTGTGTAAGAA+GGG - chr8_1:51917340-51917359 Msa1199690:intron 40.0%
! GAGGAGTTTGGTGAAGAATT+TGG + chr8_1:51917509-51917528 None:intergenic 40.0%
TTCTTCACCAAACTCCTCAA+AGG - chr8_1:51917511-51917530 Msa1199690:intron 40.0%
TCTTCACCAAACTCCTCAAA+GGG - chr8_1:51917512-51917531 Msa1199690:intron 40.0%
!! GATTTTCCCTTTGAGGAGTT+TGG + chr8_1:51917521-51917540 None:intergenic 40.0%
CATAGGGTACGTTACTGTTG+AGG + chr8_1:51914815-51914834 None:intergenic 45.0%
GAAGAAGAAAGTGGGAGAGA+TGG + chr8_1:51914884-51914903 None:intergenic 45.0%
CTGAATTGGAATTGAGGAGC+AGG + chr8_1:51914924-51914943 None:intergenic 45.0%
CTGCTCCTCAATTCCAATTC+AGG - chr8_1:51914922-51914941 Msa1199690:CDS 45.0%
! GGCACTCCCAATTTCTGTTT+TGG - chr8_1:51915170-51915189 Msa1199690:CDS 45.0%
TTCATCACCAACCTGACTAG+GGG + chr8_1:51915276-51915295 None:intergenic 45.0%
GTTTCATCACCAACCTGACT+AGG + chr8_1:51915278-51915297 None:intergenic 45.0%
GTCCAAGTTTGGAGGAATAG+TGG - chr8_1:51915373-51915392 Msa1199690:intron 45.0%
AACCCGTAGAACTCAAAGTC+TGG - chr8_1:51915403-51915422 Msa1199690:intron 45.0%
! CTCCAGACTTTGAGTTCTAC+GGG + chr8_1:51915408-51915427 None:intergenic 45.0%
! CCTCCAGACTTTGAGTTCTA+CGG + chr8_1:51915409-51915428 None:intergenic 45.0%
GGTGAACAGAGAAGCAAGAT+TGG - chr8_1:51915793-51915812 Msa1199690:CDS 45.0%
GCTTCGGGTAAAAGAAGAAG+TGG - chr8_1:51915915-51915934 Msa1199690:CDS 45.0%
GATTCGCAAAATTGAGGAGC+TGG - chr8_1:51915945-51915964 Msa1199690:CDS 45.0%
! CAAAACTGGCTTCATCTGCA+AGG + chr8_1:51915978-51915997 None:intergenic 45.0%
TGAAGCCAAAGCACAACTTG+AGG - chr8_1:51915996-51916015 Msa1199690:CDS 45.0%
TAGTGCTGCAGTTTCGGAAT+TGG - chr8_1:51916035-51916054 Msa1199690:CDS 45.0%
! GCTGCTGCTTGAAGTTTCTT+AGG + chr8_1:51916729-51916748 None:intergenic 45.0%
GAGAGAAGTGAATCTGCTAG+AGG - chr8_1:51917128-51917147 Msa1199690:CDS 45.0%
AGAAGTGAATCTGCTAGAGG+AGG - chr8_1:51917131-51917150 Msa1199690:CDS 45.0%
AATGCTGAGAAAGCTGCAGA+AGG - chr8_1:51917386-51917405 Msa1199690:intron 45.0%
AGGAGTAGTAGTTGCAGTAG+TGG + chr8_1:51917567-51917586 None:intergenic 45.0%
!! ATTATGTATTATAATTTATA+TGG + chr8_1:51914845-51914864 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAACTA+TGG - chr8_1:51915235-51915254 Msa1199690:CDS 5.0%
! TGACTAGGGGATTCTGGTTG+TGG + chr8_1:51915263-51915282 None:intergenic 50.0%
ACAACCAGAATCCCCTAGTC+AGG - chr8_1:51915262-51915281 Msa1199690:CDS 50.0%
GATGCTGTGTCCAAGTTTGG+AGG - chr8_1:51915365-51915384 Msa1199690:intron 50.0%
CCGTAGAACTCAAAGTCTGG+AGG - chr8_1:51915406-51915425 Msa1199690:intron 50.0%
ATGACTAGGACTAGGGGAAG+TGG + chr8_1:51915530-51915549 None:intergenic 50.0%
TGCAGCTATCATCAATGCCG+AGG - chr8_1:51916122-51916141 Msa1199690:CDS 50.0%
AGCTATCATCAATGCCGAGG+AGG - chr8_1:51916125-51916144 Msa1199690:CDS 50.0%
CCAACCTGACTAGGGGATTC+TGG + chr8_1:51915269-51915288 None:intergenic 55.0%
CCAGAATCCCCTAGTCAGGT+TGG - chr8_1:51915266-51915285 Msa1199690:CDS 55.0%
TTCGACTCAAACGGCGCACA+TGG - chr8_1:51916227-51916246 Msa1199690:CDS 55.0%
GAAGCCGAGGAACAAGCATC+AGG - chr8_1:51916249-51916268 Msa1199690:CDS 55.0%
GACGCCTGATGCTTGTTCCT+CGG + chr8_1:51916256-51916275 None:intergenic 55.0%
GAAGCTGGACCAGCTTCAGA+TGG - chr8_1:51917611-51917630 Msa1199690:five_prime_UTR 55.0%
GGATGCTGCAACAGCCTCCT+CGG + chr8_1:51916142-51916161 None:intergenic 60.0%
GGAGGCTGTTGCAGCATCCA+AGG - chr8_1:51916143-51916162 Msa1199690:CDS 60.0%
AACGGCGCACATGGAAGCCG+AGG - chr8_1:51916236-51916255 Msa1199690:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 51914749 51917718 51914749 ID=Msa1199690;Name=Msa1199690
chr8_1 mRNA 51914749 51917718 51914749 ID=Msa1199690-mRNA-1;Parent=Msa1199690;Name=Msa1199690-mRNA-1;_AED=0.08;_eAED=0.08;_QI=289|0.66|0.5|1|0.66|0.5|4|0|611
chr8_1 exon 51914749 51915356 51914749 ID=Msa1199690-mRNA-1:exon:16466;Parent=Msa1199690-mRNA-1
chr8_1 exon 51915612 51916665 51915612 ID=Msa1199690-mRNA-1:exon:16465;Parent=Msa1199690-mRNA-1
chr8_1 exon 51917040 51917307 51917040 ID=Msa1199690-mRNA-1:exon:16464;Parent=Msa1199690-mRNA-1
chr8_1 exon 51917524 51917718 51917524 ID=Msa1199690-mRNA-1:exon:16463;Parent=Msa1199690-mRNA-1
chr8_1 five_prime_UTR 51917524 51917718 51917524 ID=Msa1199690-mRNA-1:five_prime_utr;Parent=Msa1199690-mRNA-1
chr8_1 five_prime_UTR 51917214 51917307 51917214 ID=Msa1199690-mRNA-1:five_prime_utr;Parent=Msa1199690-mRNA-1
chr8_1 CDS 51917040 51917213 51917040 ID=Msa1199690-mRNA-1:cds;Parent=Msa1199690-mRNA-1
chr8_1 CDS 51915612 51916665 51915612 ID=Msa1199690-mRNA-1:cds;Parent=Msa1199690-mRNA-1
chr8_1 CDS 51914749 51915356 51914749 ID=Msa1199690-mRNA-1:cds;Parent=Msa1199690-mRNA-1
Gene Sequence

>Msa1199690

ATGGAGCCACAACCAGAATCCCCTAGTCAGGTTGGTGATGAAACTTCACCAAATTCTGATTCTGGTCTTAAGAATGTAATTGATACAGCAGCACCTTTGAAATCTGTCAAAGATGCTGTGTCCAAGTTTGGAGGAATAGTGGATTGGAAAACCCGTAGAACTCAAAGTCTGGAGAGAAGCAAGATTGGACATGAATTTGGAAAACCAAATACAGCTGAAGAATTGGAAAACACTAAGAAACTTACAGAAGAACTCAAACTCAACTTAGAAAGTGTAGAAAGAGATGAGCTTCGGGTAAAAGAAGAAGTGGAACTTGTGATTCGCAAAATTGAGGAGCTGGAGCAAGACCTTGCAGATGAAGCCAGTTTTGAAGCCAAAGCACAACTTGAGGTTGAAAAATCAATGCATAGTGCTGCAGTTTCGGAATTGGAATATTTGAAAAAAGAATTAGACTCTTTAAGGAAAGAGTATGATTTTATAGTGAGCGGAAGGGATGCAGCTATCATCAATGCCGAGGAGGCTGTTGCAGCATCCAAGGAGATTGAAAAAGCAGTGGAAGATTTAACAGCTGAGTTAATTGCAACAAAGGAGTCATTGATTTCGACTCAAACGGCGCACATGGAAGCCGAGGAACAAGCATCAGGCGTCGTTGATGAAGAAACTCAAAAATATAAGCTTGAACTCGAACAATCAGAAAAGGAGCTAGAGACACTAAATGAACAAGTTTTATCAGCAAGAGTTCTCAAATCCAAATTGGAAGCATCTTCCTCTTTGTTGCTTGATTTGAAAACCGAGTTAGCAGCATATATGGAATCAAAACTAGAAGATGAAACCAATGAAGAAAGAAAGAAGGAACTAGAGGTAGTAAAGATGAACATTGAAAAAACAACTAATGAGGTTAACAGCTTAAGAGAAGCTTCAATATTGCTTCAATCGGAACTAAAAGAAGAAAAGTCAATTCTCAACAACCTTAAAGAAAGTGAAGAAAAAGCTTCTGCTAAAGTCACAAGTCTTCAAGTTGAACTTGAGAAATCAAAATCAGCAATAGCTTTTCTTCAAATGAAAGAGAATGAAGCAAAAGAGATTATGGCTGAGTTACCTAAGAAACTTCAAGCAGCAGCACAAGAAGCTGATGAAGCCAAATCATTAGCTCAAACTGCTCAAGCTCAACTTCTTGAAGCACGAGAAGAAGCTGAAAAAGCCAAAGCAAACTTAGCTACATTGGAAAATTCAATCAAAGCATTGGAGAGAAGTGAATCTGCTAGAGGAGGAAGCAACAAAAACGAAGTTGATTCTTCATCTCTTGTGACACTCACATTAGATGAATATCATGAGCTAAGTAAGAGAACTCAAAAGGCTGAGGAACAAGCTAATCTAAGAATTGCAGCTGCAAATTCACAGATTGAGATGGCAAAGGAATCTGAATTGAGAAGCTTGGAGAAGTTAGAAGAACTGAATGAAGAGCTGTGTGTAAGAAGGGAATCACTTAAGATTGCAAATGAGAATGCTGAGAAAGCTGCAGAAGGAAAATCAGCTGTAGAACAAGAGTTGAGAACATGGAGAGCTGAACAAGAACAAAGAAAAGCTAATGAGGTTGCTGCTGCTGTGAATGTAAATGATTCACCAAATTCTTCACCAAACTCCTCAAAGGGAAAATCTCCTTTAGATACTACTTCTACTACCACTACTGCAACTACTACTCCTACTCCTGATAATAATAATAATGTTGAAGCTGGACCAGCTTCAGATGGAAAGAAAAAGAAGAAGAAGAAATCATTGTTTCCTTCAAAGGTTGTCATGTTCTTTGCAAAGAGAAAAACACATCCAAGCAAGTGA

Protein sequence

>Msa1199690

MEPQPESPSQVGDETSPNSDSGLKNVIDTAAPLKSVKDAVSKFGGIVDWKTRRTQSLERSKIGHEFGKPNTAEELENTKKLTEELKLNLESVERDELRVKEEVELVIRKIEELEQDLADEASFEAKAQLEVEKSMHSAAVSELEYLKKELDSLRKEYDFIVSGRDAAIINAEEAVAASKEIEKAVEDLTAELIATKESLISTQTAHMEAEEQASGVVDEETQKYKLELEQSEKELETLNEQVLSARVLKSKLEASSSLLLDLKTELAAYMESKLEDETNEERKKELEVVKMNIEKTTNEVNSLREASILLQSELKEEKSILNNLKESEEKASAKVTSLQVELEKSKSAIAFLQMKENEAKEIMAELPKKLQAAAQEADEAKSLAQTAQAQLLEAREEAEKAKANLATLENSIKALERSESARGGSNKNEVDSSSLVTLTLDEYHELSKRTQKAEEQANLRIAAANSQIEMAKESELRSLEKLEELNEELCVRRESLKIANENAEKAAEGKSAVEQELRTWRAEQEQRKANEVAAAVNVNDSPNSSPNSSKGKSPLDTTSTTTTATTTPTPDNNNNVEAGPASDGKKKKKKKSLFPSKVVMFFAKRKTHPSK*