AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0083200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083200 MtrunA17_Chr1g0196611 92.231 399 30 1 1 398 1 399 0.0 747
Msa0083200 MtrunA17_Chr7g0259491 58.134 418 167 3 2 412 1 417 4.77e-167 474
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083200 AT4G02920.2 37.209 430 234 11 5 412 3 418 1.66e-80 254
Msa0083200 AT4G02920.1 37.209 430 233 12 5 412 3 417 1.52e-79 251
Msa0083200 AT1G03340.1 34.844 353 195 8 63 412 65 385 2.64e-51 177

Find 107 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGGGTTTGCAACTTTC+AGG 0.131456 1_2:-62259786 Msa0083200:CDS
TTCAACACAGGGTTGGGTTT+TGG 0.134883 1_2:-62257905 Msa0083200:CDS
TTGGGCTTATTTGGCTTTCT+TGG 0.139996 1_2:-62257886 Msa0083200:CDS
TCATCTCATGCAATCATATT+TGG 0.156230 1_2:-62257332 Msa0083200:three_prime_UTR
CCACTAAAGGAGGGGAATTT+TGG 0.184646 1_2:-62260524 Msa0083200:five_prime_UTR
AAATGGTCAAGTCACGTTTA+TGG 0.221667 1_2:-62259640 Msa0083200:CDS
AAAATTACTGTTCATCTAAA+TGG 0.237725 1_2:-62259657 Msa0083200:CDS
GAGATGTAGAAAGTCCTATT+TGG 0.244598 1_2:+62259723 None:intergenic
CACTGACCATTCCTTTAAAA+AGG 0.245242 1_2:-62258647 Msa0083200:intron
TGGGCTTATTTGGCTTTCTT+GGG 0.252384 1_2:-62257885 Msa0083200:CDS
GATATCAGAGTCCAAATCTT+AGG 0.281870 1_2:-62260249 Msa0083200:CDS
CCAAAATTCCCCTCCTTTAG+TGG 0.284993 1_2:+62260524 None:intergenic
GATGAATTTAACCTAAGATT+TGG 0.287708 1_2:+62260238 None:intergenic
TGAGAGCCTTCTGTTCTTGA+TGG 0.290630 1_2:-62258104 Msa0083200:CDS
TGGTATGATTATTACCTATT+AGG 0.291086 1_2:-62257538 Msa0083200:three_prime_UTR
GATTCAGAAACTTACTTTGA+TGG 0.292699 1_2:-62260449 Msa0083200:CDS
CAATTCTCTGCTGGCATTGC+TGG 0.299676 1_2:-62258004 Msa0083200:CDS
GACAATTAAAACTACCTAAT+AGG 0.315326 1_2:+62257524 None:intergenic
AGGTTTCCCCTTTCTTCATA+AGG 0.347683 1_2:-62257393 Msa0083200:three_prime_UTR
CTCTGATATCTAATAATATC+TGG 0.353756 1_2:+62260262 None:intergenic
GGATTGGCTTTGACTTTCTT+CGG 0.356219 1_2:+62258196 None:intergenic
TTCACCTAAGCTTTGACATT+TGG 0.358783 1_2:-62257575 Msa0083200:three_prime_UTR
TATCTAATAATATCTGGTTT+TGG 0.360696 1_2:+62260268 None:intergenic
AGCTTTGTTGTCTGACTTGA+TGG 0.364159 1_2:-62259802 Msa0083200:CDS
AATGGTCAAGTCACGTTTAT+GGG 0.369340 1_2:-62259639 Msa0083200:CDS
GTTCTTTCACTGAAGAAATC+AGG 0.382585 1_2:-62258052 Msa0083200:CDS
TCTGCTGGCATTGCTGGTAC+TGG 0.385638 1_2:-62257998 Msa0083200:CDS
AAGATAAATTGTAAAGTCTA+AGG 0.387834 1_2:-62257463 Msa0083200:three_prime_UTR
AAGGTCTTCAACACAGGGTT+GGG 0.391495 1_2:-62257911 Msa0083200:CDS
ATCCTCTCATCTACCCAAAT+AGG 0.392024 1_2:-62259737 Msa0083200:CDS
ATGATAGGGTTGTCAACAAT+TGG 0.402315 1_2:-62260305 Msa0083200:intron
AGATGTAGAAAGTCCTATTT+GGG 0.403362 1_2:+62259724 None:intergenic
TGTACATACCTAGTGAAGTA+TGG 0.405041 1_2:+62259522 None:intergenic
AACCGTTGTATCTGATTTGT+TGG 0.412329 1_2:-62257652 Msa0083200:three_prime_UTR
ATTTGGCTTGATCATCACTA+TGG 0.414828 1_2:-62257558 Msa0083200:three_prime_UTR
GGTTTCCCCTTTCTTCATAA+GGG 0.416020 1_2:-62257392 Msa0083200:three_prime_UTR
ACTGCTGAAGCAGGTTTAGA+TGG 0.421739 1_2:-62259834 Msa0083200:CDS
AAGCAAGAATGCTGGAAAGA+TGG 0.436409 1_2:-62257828 Msa0083200:CDS
TATGTAACCCTTATGAAGAA+AGG 0.442798 1_2:+62257385 None:intergenic
AGCAAGAATGCTGGAAAGAT+GGG 0.449740 1_2:-62257827 Msa0083200:CDS
TGTTCTTGATGGCTGATAAG+AGG 0.453397 1_2:-62258093 Msa0083200:CDS
AAATGCTTACATTACTTGCT+TGG 0.454470 1_2:+62257502 None:intergenic
GAGAATTGTGTAAGGAGCTC+GGG 0.454630 1_2:+62258019 None:intergenic
ATGTAACCCTTATGAAGAAA+GGG 0.455268 1_2:+62257386 None:intergenic
TGATGGGTTTGCAACTTTCA+GGG 0.455500 1_2:-62259785 Msa0083200:CDS
CTATCACTTCAGCAGCCATC+AGG 0.462770 1_2:+62257621 None:intergenic
GAAGACCTTAGACGCACAAA+AGG 0.465886 1_2:+62257925 None:intergenic
GCGTCTAAGGTCTTCAACAC+AGG 0.476430 1_2:-62257917 Msa0083200:CDS
CTTACTTTGATGGCTTCTCA+TGG 0.481501 1_2:-62260439 Msa0083200:CDS
GGCTGATAAGAGGCATCGTC+GGG 0.482476 1_2:-62258083 Msa0083200:CDS
TTCACTGAAGAAATCAGGTC+CGG 0.487415 1_2:-62258047 Msa0083200:CDS
CAAGCCAAATGTCAAAGCTT+AGG 0.491076 1_2:+62257571 None:intergenic
AAGCATTTGCTTGGCTTTAG+CGG 0.496226 1_2:-62257487 Msa0083200:three_prime_UTR
TGCTAGTAGTGGCAGTGCTA+AGG 0.499557 1_2:-62257733 Msa0083200:CDS
CTCCTTACACAATTCTCTGC+TGG 0.505017 1_2:-62258013 Msa0083200:CDS
TTGTTGGATGTTCAGCCTGA+TGG 0.508069 1_2:-62257636 Msa0083200:three_prime_UTR
GGGCTTATTTGGCTTTCTTG+GGG 0.508276 1_2:-62257884 Msa0083200:CDS
CCTTGTTCGTCAATAACCAT+TGG 0.509877 1_2:+62260139 None:intergenic
GTAAGGAGCTCGGGAAGCTC+CGG 0.511742 1_2:+62258028 None:intergenic
GTATCAAAACGCACACATAC+AGG 0.515015 1_2:-62259567 Msa0083200:CDS
AAGACCTTAGACGCACAAAA+GGG 0.516732 1_2:+62257926 None:intergenic
TTCATGGCATATTCTTGAGA+TGG 0.519316 1_2:+62260412 None:intergenic
TTTGCTAGCTTTAAAGCCAA+TGG 0.521136 1_2:-62260155 Msa0083200:CDS
AGAGGATGCAATGATATTTG+AGG 0.523196 1_2:+62259753 None:intergenic
AAGCTCAAAAGTATAGTGCT+TGG 0.523213 1_2:+62259915 None:intergenic
AAGTAATGTAAGCATTTGCT+TGG 0.525023 1_2:-62257496 Msa0083200:three_prime_UTR
TAAGGTCTTCAACACAGGGT+TGG 0.534621 1_2:-62257912 Msa0083200:CDS
AGAGAATTGTGTAAGGAGCT+CGG 0.542826 1_2:+62258018 None:intergenic
AAAAGAAAGTAGCCAGGGAG+AGG 0.544026 1_2:-62258159 Msa0083200:CDS
ATCTCAAGAATATGCCATGA+AGG 0.545054 1_2:-62260410 Msa0083200:intron
CTTGAACAGATCCCTCTCCC+TGG 0.545602 1_2:+62258147 None:intergenic
AGCTGCAGCGTTGCTAGTAG+TGG 0.549465 1_2:-62257744 Msa0083200:CDS
GTTAACATAAGCAAGAATGC+TGG 0.550226 1_2:-62257836 Msa0083200:CDS
ACATCTAAGACTGCTGAAGC+AGG 0.551355 1_2:-62259843 Msa0083200:CDS
TTTGATAGAGCCACTAAAGG+AGG 0.552159 1_2:-62260534 Msa0083200:five_prime_UTR
TTATGAAGAAAGGGGAAACC+TGG 0.552480 1_2:+62257395 None:intergenic
TGGCTGCTGAAGTGATAGCC+AGG 0.563013 1_2:-62257616 Msa0083200:three_prime_UTR
GCTTTGTTGTCTGACTTGAT+GGG 0.563096 1_2:-62259801 Msa0083200:CDS
TTGATAGAGCCACTAAAGGA+GGG 0.573532 1_2:-62260533 Msa0083200:five_prime_UTR
TGATAGAGCCACTAAAGGAG+GGG 0.573616 1_2:-62260532 Msa0083200:five_prime_UTR
TGCCAGCAGAGAATTGTGTA+AGG 0.578242 1_2:+62258011 None:intergenic
GCTGAATATAAATGAAGTAG+AGG 0.580301 1_2:-62258706 Msa0083200:CDS
TGGCTGATAAGAGGCATCGT+CGG 0.580551 1_2:-62258084 Msa0083200:CDS
CTTGGGGAGTAAATAAGCTG+AGG 0.580784 1_2:-62257868 Msa0083200:CDS
TATCAGCCATCAAGAACAGA+AGG 0.589403 1_2:+62258098 None:intergenic
CAAGAATGACATCAAAAGAG+TGG 0.595539 1_2:-62260207 Msa0083200:CDS
TGCTTGTTCCATACTTCACT+AGG 0.596244 1_2:-62259530 Msa0083200:intron
AAAGAAAGTAGCCAGGGAGA+GGG 0.598067 1_2:-62258158 Msa0083200:CDS
GACCTTAGACGCACAAAAGG+GGG 0.599512 1_2:+62257928 None:intergenic
TCTGCAAACTAGCTTGTGGA+AGG 0.600269 1_2:-62257952 Msa0083200:CDS
GTAGAGTGAATATCCAATGT+GGG 0.603918 1_2:+62258669 None:intergenic
CGTCTAAGGTCTTCAACACA+GGG 0.609157 1_2:-62257916 Msa0083200:CDS
AGTTTAGTGAAAATGTTACC+AGG 0.612077 1_2:-62257413 Msa0083200:three_prime_UTR
TTGGGGAGTAAATAAGCTGA+GGG 0.614442 1_2:-62257867 Msa0083200:CDS
GTCCTATTTGGGTAGATGAG+AGG 0.616451 1_2:+62259735 None:intergenic
TGTAACCCTTATGAAGAAAG+GGG 0.622798 1_2:+62257387 None:intergenic
GTGATCTGCAAACTAGCTTG+TGG 0.628517 1_2:-62257956 Msa0083200:CDS
AAAGATGGGATTGAAAGATG+AGG 0.631344 1_2:-62257813 Msa0083200:CDS
AGACCTTAGACGCACAAAAG+GGG 0.635020 1_2:+62257927 None:intergenic
AAATGTCAAAGCTTAGGTGA+AGG 0.636141 1_2:+62257577 None:intergenic
TAGAGTGAATATCCAATGTG+GGG 0.640007 1_2:+62258670 None:intergenic
ATCCAACAAATCAGATACAA+CGG 0.645213 1_2:+62257650 None:intergenic
TGTAGAGTGAATATCCAATG+TGG 0.652502 1_2:+62258668 None:intergenic
CCAATGGTTATTGACGAACA+AGG 0.655558 1_2:-62260139 Msa0083200:intron
CTGCAAACTAGCTTGTGGAA+GGG 0.663424 1_2:-62257951 Msa0083200:CDS
TCACAGATAGCACGACAGCA+AGG 0.673650 1_2:+62257975 None:intergenic
AGAGTGAATATCCAATGTGG+GGG 0.681745 1_2:+62258671 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATTTTTTTTTTTTATGAT+AGG - chr1_2:62257594-62257613 Msa0083200:three_prime_UTR 10.0%
!! GTTATATTTATAATTAAATC+CGG + chr1_2:62258543-62258562 None:intergenic 10.0%
!!! AAAGTTTTTTTTTTTTTGGT+TGG + chr1_2:62257323-62257342 None:intergenic 15.0%
!! ATAATAGAAAACAATATTCA+GGG - chr1_2:62258476-62258495 Msa0083200:intron 15.0%
!! TAACATCAAATTTAAAAACT+TGG - chr1_2:62258559-62258578 Msa0083200:intron 15.0%
!! AAAATGCATAAAATTAAAGT+CGG + chr1_2:62259470-62259489 None:intergenic 15.0%
!!! ACGCAAAGTTTTTTTTTTTT+TGG + chr1_2:62257327-62257346 None:intergenic 20.0%
!! AAAAAAAACTTTGCGTTTAA+AGG - chr1_2:62257331-62257350 Msa0083200:three_prime_UTR 20.0%
!!! TTTTTTTTGAGAGAGAATTT+TGG + chr1_2:62257426-62257445 None:intergenic 20.0%
!!! TACTAATAATTTTACCTTCA+TGG + chr1_2:62257521-62257540 None:intergenic 20.0%
!!! TATCTAATAATATCTGGTTT+TGG + chr1_2:62257649-62257668 None:intergenic 20.0%
!! AGTATAATGCTTGAATTAAA+AGG - chr1_2:62257892-62257911 Msa0083200:CDS 20.0%
!! CTTGTAAAAAATATACAACA+TGG + chr1_2:62257928-62257947 None:intergenic 20.0%
!!! CTGAAATTATTCTTATCTTT+TGG - chr1_2:62257962-62257981 Msa0083200:CDS 20.0%
!!! AACAGTAATTTTTGAACTAA+GGG + chr1_2:62258249-62258268 None:intergenic 20.0%
!! AAAATTACTGTTCATCTAAA+TGG - chr1_2:62258257-62258276 Msa0083200:intron 20.0%
!! TGTGATCAATTGAATTTAAA+CGG + chr1_2:62258427-62258446 None:intergenic 20.0%
!! CATAATAGAAAACAATATTC+AGG - chr1_2:62258475-62258494 Msa0083200:intron 20.0%
!!! CACATTTAAAAATGCATTTT+TGG + chr1_2:62258585-62258604 None:intergenic 20.0%
!!! TCGAATAATTTTATCTAACT+CGG - chr1_2:62258927-62258946 Msa0083200:intron 20.0%
!! GTTAAAGTAGTAAAAATCAA+TGG - chr1_2:62259003-62259022 Msa0083200:intron 20.0%
!! CAAGAATAGAATATTGAATA+TGG + chr1_2:62259139-62259158 None:intergenic 20.0%
!! AAATGCATAAAATTAAAGTC+GGG + chr1_2:62259469-62259488 None:intergenic 20.0%
!! AAGATAAATTGTAAAGTCTA+AGG - chr1_2:62260451-62260470 Msa0083200:CDS 20.0%
! CTCTGATATCTAATAATATC+TGG + chr1_2:62257655-62257674 None:intergenic 25.0%
! GATGAATTTAACCTAAGATT+TGG + chr1_2:62257679-62257698 None:intergenic 25.0%
! AATGCACAAATTCAATAAAC+TGG + chr1_2:62257808-62257827 None:intergenic 25.0%
! TCAAGCATTATACTAATACA+TGG + chr1_2:62257886-62257905 None:intergenic 25.0%
! TCTTGAAAAAAATCAAGCAA+AGG + chr1_2:62258221-62258240 None:intergenic 25.0%
!! GAACAGTAATTTTTGAACTA+AGG + chr1_2:62258250-62258269 None:intergenic 25.0%
! ATATTAATGCTTTATCATGC+AGG + chr1_2:62258649-62258668 None:intergenic 25.0%
! ATAGCTGTAAATTTGATCAT+TGG - chr1_2:62258826-62258845 Msa0083200:intron 25.0%
! TAGCTGTAAATTTGATCATT+GGG - chr1_2:62258827-62258846 Msa0083200:intron 25.0%
!! TATTCTACCTACCTTTTTAA+AGG + chr1_2:62259281-62259300 None:intergenic 25.0%
!! AATATGTTTTCCATGACAAT+TGG - chr1_2:62259297-62259316 Msa0083200:intron 25.0%
! TTTCTCATAAAATTTGAGCT+AGG + chr1_2:62259524-62259543 None:intergenic 25.0%
!!! AGGGAATCATGTTTTATTTT+TGG - chr1_2:62259557-62259576 Msa0083200:CDS 25.0%
!!! GGGAATCATGTTTTATTTTT+GGG - chr1_2:62259558-62259577 Msa0083200:CDS 25.0%
!!! TTCTTTTTCTTTTTTCGTGA+TGG + chr1_2:62259742-62259761 None:intergenic 25.0%
! TGGTATGATTATTACCTATT+AGG - chr1_2:62260376-62260395 Msa0083200:intron 25.0%
! GACAATTAAAACTACCTAAT+AGG + chr1_2:62260393-62260412 None:intergenic 25.0%
GATTCAGAAACTTACTTTGA+TGG - chr1_2:62257465-62257484 Msa0083200:three_prime_UTR 30.0%
AGATGTAGAAAGTCCTATTT+GGG + chr1_2:62258193-62258212 None:intergenic 30.0%
! ACTTTTGCTGAAAATCTACA+TGG - chr1_2:62259181-62259200 Msa0083200:intron 30.0%
GCTGAATATAAATGAAGTAG+AGG - chr1_2:62259208-62259227 Msa0083200:intron 30.0%
!! TACCTACCTTTTTAAAGGAA+TGG + chr1_2:62259276-62259295 None:intergenic 30.0%
! ATTTTGCGTATGTCAAATTC+AGG + chr1_2:62259329-62259348 None:intergenic 30.0%
TACGCAAAATATGCTGTTAT+AGG - chr1_2:62259339-62259358 Msa0083200:intron 30.0%
TCTATCCTCTGTAAAACAAA+TGG - chr1_2:62259397-62259416 Msa0083200:intron 30.0%
!!! ATGATCCATTTGTTTTACAG+AGG + chr1_2:62259405-62259424 None:intergenic 30.0%
CTGTAAAACAAATGGATCAT+TGG - chr1_2:62259405-62259424 Msa0083200:intron 30.0%
!! GAGAGCTTTTACTCTAAAAA+TGG - chr1_2:62259431-62259450 Msa0083200:intron 30.0%
TTTGTTTCCTTCATATGATG+TGG - chr1_2:62259487-62259506 Msa0083200:intron 30.0%
TGAGAAATAATCATCAGATG+AGG - chr1_2:62259537-62259556 Msa0083200:CDS 30.0%
GAGAAATAATCATCAGATGA+GGG - chr1_2:62259538-62259557 Msa0083200:CDS 30.0%
TAAATACTGTGATCACTGTA+TGG + chr1_2:62259652-62259671 None:intergenic 30.0%
!!! TTTCTTTTTTCGTGATGGAT+TGG + chr1_2:62259737-62259756 None:intergenic 30.0%
AAAAGAAAAAGAAAGTAGCC+AGG - chr1_2:62259749-62259768 Msa0083200:CDS 30.0%
AAAGAAAAAGAAAGTAGCCA+GGG - chr1_2:62259750-62259769 Msa0083200:CDS 30.0%
TGAGGAAATGATTCAAAAAG+TGG - chr1_2:62260119-62260138 Msa0083200:intron 30.0%
ATCCAACAAATCAGATACAA+CGG + chr1_2:62260267-62260286 None:intergenic 30.0%
AAATGCTTACATTACTTGCT+TGG + chr1_2:62260415-62260434 None:intergenic 30.0%
AAGTAATGTAAGCATTTGCT+TGG - chr1_2:62260418-62260437 Msa0083200:CDS 30.0%
AGTTTAGTGAAAATGTTACC+AGG - chr1_2:62260501-62260520 Msa0083200:five_prime_UTR 30.0%
ATGTAACCCTTATGAAGAAA+GGG + chr1_2:62260531-62260550 None:intergenic 30.0%
TATGTAACCCTTATGAAGAA+AGG + chr1_2:62260532-62260551 None:intergenic 30.0%
TCATCTCATGCAATCATATT+TGG - chr1_2:62260582-62260601 Msa0083200:five_prime_UTR 30.0%
! GTTTTTGATAGAGCCACTAA+AGG - chr1_2:62257377-62257396 Msa0083200:three_prime_UTR 35.0%
TTCATGGCATATTCTTGAGA+TGG + chr1_2:62257505-62257524 None:intergenic 35.0%
ATCTCAAGAATATGCCATGA+AGG - chr1_2:62257504-62257523 Msa0083200:three_prime_UTR 35.0%
ATGATAGGGTTGTCAACAAT+TGG - chr1_2:62257609-62257628 Msa0083200:three_prime_UTR 35.0%
GATATCAGAGTCCAAATCTT+AGG - chr1_2:62257665-62257684 Msa0083200:three_prime_UTR 35.0%
CAAGAATGACATCAAAAGAG+TGG - chr1_2:62257707-62257726 Msa0083200:exon 35.0%
!! TTTGCTAGCTTTAAAGCCAA+TGG - chr1_2:62257759-62257778 Msa0083200:CDS 35.0%
! AAGCTCAAAAGTATAGTGCT+TGG + chr1_2:62258002-62258021 None:intergenic 35.0%
! AGCACTATACTTTTGAGCTT+TGG - chr1_2:62258002-62258021 Msa0083200:CDS 35.0%
!! CTGTGAAGTTTTATCATGCT+CGG + chr1_2:62258045-62258064 None:intergenic 35.0%
AGAGGATGCAATGATATTTG+AGG + chr1_2:62258164-62258183 None:intergenic 35.0%
GAGATGTAGAAAGTCCTATT+TGG + chr1_2:62258194-62258213 None:intergenic 35.0%
AAATGGTCAAGTCACGTTTA+TGG - chr1_2:62258274-62258293 Msa0083200:intron 35.0%
AATGGTCAAGTCACGTTTAT+GGG - chr1_2:62258275-62258294 Msa0083200:intron 35.0%
TGTACATACCTAGTGAAGTA+TGG + chr1_2:62258395-62258414 None:intergenic 35.0%
TCACTAGGTATGTACATATG+TGG - chr1_2:62258399-62258418 Msa0083200:intron 35.0%
TCACATGAAATCCTTCTGTT+TGG - chr1_2:62258442-62258461 Msa0083200:intron 35.0%
CACATGAAATCCTTCTGTTT+GGG - chr1_2:62258443-62258462 Msa0083200:intron 35.0%
AACAATATTCAGGGACTTCT+TGG - chr1_2:62258485-62258504 Msa0083200:intron 35.0%
GTCAATCTATTGATCAACAC+CGG - chr1_2:62258521-62258540 Msa0083200:intron 35.0%
TTGAGTGTATAGTCTGATAC+TGG - chr1_2:62258612-62258631 Msa0083200:intron 35.0%
AAACAGAGTCACATGCATAT+GGG + chr1_2:62258879-62258898 None:intergenic 35.0%
AAAACAGAGTCACATGCATA+TGG + chr1_2:62258880-62258899 None:intergenic 35.0%
CGGCAACAAATACAAAAATC+AGG - chr1_2:62258947-62258966 Msa0083200:intron 35.0%
TAGAGTGAATATCCAATGTG+GGG + chr1_2:62259247-62259266 None:intergenic 35.0%
GTAGAGTGAATATCCAATGT+GGG + chr1_2:62259248-62259267 None:intergenic 35.0%
TGTAGAGTGAATATCCAATG+TGG + chr1_2:62259249-62259268 None:intergenic 35.0%
! CACTGACCATTCCTTTAAAA+AGG - chr1_2:62259267-62259286 Msa0083200:intron 35.0%
! GACCATTCCTTTAAAAAGGT+AGG - chr1_2:62259271-62259290 Msa0083200:intron 35.0%
ACTCAATCCACATCATATGA+AGG + chr1_2:62259497-62259516 None:intergenic 35.0%
! CATATGATGTGGATTGAGTT+AGG - chr1_2:62259498-62259517 Msa0083200:intron 35.0%
GTTCTTTCACTGAAGAAATC+AGG - chr1_2:62259862-62259881 Msa0083200:CDS 35.0%
GTTAACATAAGCAAGAATGC+TGG - chr1_2:62260078-62260097 Msa0083200:intron 35.0%
AAAGATGGGATTGAAAGATG+AGG - chr1_2:62260101-62260120 Msa0083200:intron 35.0%
! AACCGTTGTATCTGATTTGT+TGG - chr1_2:62260262-62260281 Msa0083200:CDS 35.0%
AAATGTCAAAGCTTAGGTGA+AGG + chr1_2:62260340-62260359 None:intergenic 35.0%
! TTCACCTAAGCTTTGACATT+TGG - chr1_2:62260339-62260358 Msa0083200:intron 35.0%
!! ATTTGGCTTGATCATCACTA+TGG - chr1_2:62260356-62260375 Msa0083200:intron 35.0%
TGTAACCCTTATGAAGAAAG+GGG + chr1_2:62260530-62260549 None:intergenic 35.0%
TTTGATAGAGCCACTAAAGG+AGG - chr1_2:62257380-62257399 Msa0083200:three_prime_UTR 40.0%
TTGATAGAGCCACTAAAGGA+GGG - chr1_2:62257381-62257400 Msa0083200:three_prime_UTR 40.0%
! CTTACTTTGATGGCTTCTCA+TGG - chr1_2:62257475-62257494 Msa0083200:three_prime_UTR 40.0%
!!! TCTGGTTTTGGTGCATAACA+AGG + chr1_2:62257637-62257656 None:intergenic 40.0%
CCTTGTTCGTCAATAACCAT+TGG + chr1_2:62257778-62257797 None:intergenic 40.0%
CCAATGGTTATTGACGAACA+AGG - chr1_2:62257775-62257794 Msa0083200:CDS 40.0%
!! AGCTTTGTTGTCTGACTTGA+TGG - chr1_2:62258112-62258131 Msa0083200:CDS 40.0%
! GCTTTGTTGTCTGACTTGAT+GGG - chr1_2:62258113-62258132 Msa0083200:CDS 40.0%
!! TTGATGGGTTTGCAACTTTC+AGG - chr1_2:62258128-62258147 Msa0083200:CDS 40.0%
!! TGATGGGTTTGCAACTTTCA+GGG - chr1_2:62258129-62258148 Msa0083200:CDS 40.0%
ATCCTCTCATCTACCCAAAT+AGG - chr1_2:62258177-62258196 Msa0083200:CDS 40.0%
GTATCAAAACGCACACATAC+AGG - chr1_2:62258347-62258366 Msa0083200:intron 40.0%
TGCTTGTTCCATACTTCACT+AGG - chr1_2:62258384-62258403 Msa0083200:intron 40.0%
GACAAAGTAACCCAAACAGA+AGG + chr1_2:62258456-62258475 None:intergenic 40.0%
AGTGTATAGTCTGATACTGG+AGG - chr1_2:62258615-62258634 Msa0083200:intron 40.0%
GTTTGTCGGAAACTTAGTTC+AGG + chr1_2:62259059-62259078 None:intergenic 40.0%
GCGTAACTTCAAAGGTTTGT+CGG + chr1_2:62259073-62259092 None:intergenic 40.0%
TGCTGAAAATCTACATGGAC+AGG - chr1_2:62259186-62259205 Msa0083200:intron 40.0%
AGAGTGAATATCCAATGTGG+GGG + chr1_2:62259246-62259265 None:intergenic 40.0%
TTGCGTATGTCAAATTCAGG+AGG + chr1_2:62259326-62259345 None:intergenic 40.0%
GCACATGAGACTATCAACAA+TGG + chr1_2:62259627-62259646 None:intergenic 40.0%
!! GGATTGGCTTTGACTTTCTT+CGG + chr1_2:62259721-62259740 None:intergenic 40.0%
TATCAGCCATCAAGAACAGA+AGG + chr1_2:62259819-62259838 None:intergenic 40.0%
! TGTTCTTGATGGCTGATAAG+AGG - chr1_2:62259821-62259840 Msa0083200:CDS 40.0%
TTCACTGAAGAAATCAGGTC+CGG - chr1_2:62259867-62259886 Msa0083200:CDS 40.0%
AGAGAATTGTGTAAGGAGCT+CGG + chr1_2:62259899-62259918 None:intergenic 40.0%
AAGACCTTAGACGCACAAAA+GGG + chr1_2:62259991-62260010 None:intergenic 40.0%
!! TTGGGCTTATTTGGCTTTCT+TGG - chr1_2:62260028-62260047 Msa0083200:intron 40.0%
!! TGGGCTTATTTGGCTTTCTT+GGG - chr1_2:62260029-62260048 Msa0083200:intron 40.0%
TTGGGGAGTAAATAAGCTGA+GGG - chr1_2:62260047-62260066 Msa0083200:intron 40.0%
AAGCAAGAATGCTGGAAAGA+TGG - chr1_2:62260086-62260105 Msa0083200:intron 40.0%
AGCAAGAATGCTGGAAAGAT+GGG - chr1_2:62260087-62260106 Msa0083200:intron 40.0%
!!! GGTACAGTTGTTTTGAAACC+TGG + chr1_2:62260319-62260338 None:intergenic 40.0%
CAAGCCAAATGTCAAAGCTT+AGG + chr1_2:62260346-62260365 None:intergenic 40.0%
!! AAGCATTTGCTTGGCTTTAG+CGG - chr1_2:62260427-62260446 Msa0083200:CDS 40.0%
TTATGAAGAAAGGGGAAACC+TGG + chr1_2:62260522-62260541 None:intergenic 40.0%
AGGTTTCCCCTTTCTTCATA+AGG - chr1_2:62260521-62260540 Msa0083200:five_prime_UTR 40.0%
GGTTTCCCCTTTCTTCATAA+GGG - chr1_2:62260522-62260541 Msa0083200:five_prime_UTR 40.0%
TGATAGAGCCACTAAAGGAG+GGG - chr1_2:62257382-62257401 Msa0083200:three_prime_UTR 45.0%
CCAAAATTCCCCTCCTTTAG+TGG + chr1_2:62257393-62257412 None:intergenic 45.0%
! CCACTAAAGGAGGGGAATTT+TGG - chr1_2:62257390-62257409 Msa0083200:three_prime_UTR 45.0%
! ACATCTAAGACTGCTGAAGC+AGG - chr1_2:62258071-62258090 Msa0083200:CDS 45.0%
ACTGCTGAAGCAGGTTTAGA+TGG - chr1_2:62258080-62258099 Msa0083200:CDS 45.0%
GTCCTATTTGGGTAGATGAG+AGG + chr1_2:62258182-62258201 None:intergenic 45.0%
CATGTTTCTCTTGTCTTGCC+AGG - chr1_2:62258761-62258780 Msa0083200:intron 45.0%
!! CAGGAGTGCTGTGTTAGTTT+GGG - chr1_2:62258780-62258799 Msa0083200:intron 45.0%
AGTCACATGCATATGGGATC+AGG + chr1_2:62258873-62258892 None:intergenic 45.0%
TCACTATGCAAGAACAAGGC+AGG + chr1_2:62259029-62259048 None:intergenic 45.0%
GGACTCACTATGCAAGAACA+AGG + chr1_2:62259033-62259052 None:intergenic 45.0%
TCGGAAACTTAGTTCAGGCA+GGG + chr1_2:62259054-62259073 None:intergenic 45.0%
AAAAGAAAGTAGCCAGGGAG+AGG - chr1_2:62259755-62259774 Msa0083200:CDS 45.0%
AAAGAAAGTAGCCAGGGAGA+GGG - chr1_2:62259756-62259775 Msa0083200:CDS 45.0%
TGAGAGCCTTCTGTTCTTGA+TGG - chr1_2:62259810-62259829 Msa0083200:CDS 45.0%
GAGAATTGTGTAAGGAGCTC+GGG + chr1_2:62259898-62259917 None:intergenic 45.0%
CTCCTTACACAATTCTCTGC+TGG - chr1_2:62259901-62259920 Msa0083200:CDS 45.0%
TGCCAGCAGAGAATTGTGTA+AGG + chr1_2:62259906-62259925 None:intergenic 45.0%
! GTGATCTGCAAACTAGCTTG+TGG - chr1_2:62259958-62259977 Msa0083200:intron 45.0%
! TCTGCAAACTAGCTTGTGGA+AGG - chr1_2:62259962-62259981 Msa0083200:intron 45.0%
! CTGCAAACTAGCTTGTGGAA+GGG - chr1_2:62259963-62259982 Msa0083200:intron 45.0%
AGACCTTAGACGCACAAAAG+GGG + chr1_2:62259990-62260009 None:intergenic 45.0%
GAAGACCTTAGACGCACAAA+AGG + chr1_2:62259992-62260011 None:intergenic 45.0%
! CGTCTAAGGTCTTCAACACA+GGG - chr1_2:62259998-62260017 Msa0083200:intron 45.0%
TAAGGTCTTCAACACAGGGT+TGG - chr1_2:62260002-62260021 Msa0083200:intron 45.0%
AAGGTCTTCAACACAGGGTT+GGG - chr1_2:62260003-62260022 Msa0083200:intron 45.0%
! TTCAACACAGGGTTGGGTTT+TGG - chr1_2:62260009-62260028 Msa0083200:intron 45.0%
! TCAACACAGGGTTGGGTTTT+GGG - chr1_2:62260010-62260029 Msa0083200:intron 45.0%
!!! GGTTGGGTTTTGGGCTTATT+TGG - chr1_2:62260019-62260038 Msa0083200:intron 45.0%
!! GGGCTTATTTGGCTTTCTTG+GGG - chr1_2:62260030-62260049 Msa0083200:intron 45.0%
CTTGGGGAGTAAATAAGCTG+AGG - chr1_2:62260046-62260065 Msa0083200:intron 45.0%
TTGTTGGATGTTCAGCCTGA+TGG - chr1_2:62260278-62260297 Msa0083200:CDS 45.0%
!!! AATTTTTTTTTTTTATGATA+GGG - chr1_2:62257595-62257614 Msa0083200:three_prime_UTR 5.0%
CCAAACTAACACAGCACTCC+TGG + chr1_2:62258782-62258801 None:intergenic 50.0%
!! CCAGGAGTGCTGTGTTAGTT+TGG - chr1_2:62258779-62258798 Msa0083200:intron 50.0%
GTCGGAAACTTAGTTCAGGC+AGG + chr1_2:62259055-62259074 None:intergenic 50.0%
GCACGTGTGCGTAACTTCAA+AGG + chr1_2:62259081-62259100 None:intergenic 50.0%
CAATGTGGGGGAAATGCTTC+TGG + chr1_2:62259234-62259253 None:intergenic 50.0%
!! CAGAAGCATTTCCCCCACAT+TGG - chr1_2:62259232-62259251 Msa0083200:intron 50.0%
CAGGAGGAAGCCAATTGTCA+TGG + chr1_2:62259310-62259329 None:intergenic 50.0%
!! TGGCTGATAAGAGGCATCGT+CGG - chr1_2:62259830-62259849 Msa0083200:CDS 50.0%
CAATTCTCTGCTGGCATTGC+TGG - chr1_2:62259910-62259929 Msa0083200:CDS 50.0%
TCACAGATAGCACGACAGCA+AGG + chr1_2:62259942-62259961 None:intergenic 50.0%
GACCTTAGACGCACAAAAGG+GGG + chr1_2:62259989-62260008 None:intergenic 50.0%
! GCGTCTAAGGTCTTCAACAC+AGG - chr1_2:62259997-62260016 Msa0083200:intron 50.0%
TGCTAGTAGTGGCAGTGCTA+AGG - chr1_2:62260181-62260200 Msa0083200:CDS 50.0%
CTATCACTTCAGCAGCCATC+AGG + chr1_2:62260296-62260315 None:intergenic 50.0%
CTTGAACAGATCCCTCTCCC+TGG + chr1_2:62259770-62259789 None:intergenic 55.0%
!! GGCTGATAAGAGGCATCGTC+GGG - chr1_2:62259831-62259850 Msa0083200:CDS 55.0%
TCTGCTGGCATTGCTGGTAC+TGG - chr1_2:62259916-62259935 Msa0083200:CDS 55.0%
AGCTGCAGCGTTGCTAGTAG+TGG - chr1_2:62260170-62260189 Msa0083200:CDS 55.0%
TGGCTGCTGAAGTGATAGCC+AGG - chr1_2:62260298-62260317 Msa0083200:CDS 55.0%
GCTCACTGTTCGCGCGCTTA+TGG + chr1_2:62258721-62258740 None:intergenic 60.0%
GTAAGGAGCTCGGGAAGCTC+CGG + chr1_2:62259889-62259908 None:intergenic 60.0%
! GGCCCCCTTTTGTGCGTCTA+AGG - chr1_2:62259984-62260003 Msa0083200:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 62257307 62260629 62257307 ID=Msa0083200;Name=Msa0083200
chr1_2 mRNA 62257307 62260629 62257307 ID=Msa0083200-mRNA-1;Parent=Msa0083200;Name=Msa0083200-mRNA-1;_AED=0.06;_eAED=0.06;_QI=153|1|1|1|1|1|5|417|412
chr1_2 exon 62257307 62258219 62257307 ID=Msa0083200-mRNA-1:exon:20667;Parent=Msa0083200-mRNA-1
chr1_2 exon 62258648 62258728 62258648 ID=Msa0083200-mRNA-1:exon:20666;Parent=Msa0083200-mRNA-1
chr1_2 exon 62259531 62259945 62259531 ID=Msa0083200-mRNA-1:exon:20665;Parent=Msa0083200-mRNA-1
chr1_2 exon 62260140 62260320 62260140 ID=Msa0083200-mRNA-1:exon:20664;Parent=Msa0083200-mRNA-1
chr1_2 exon 62260411 62260629 62260411 ID=Msa0083200-mRNA-1:exon:20663;Parent=Msa0083200-mRNA-1
chr1_2 five_prime_UTR 62260477 62260629 62260477 ID=Msa0083200-mRNA-1:five_prime_utr;Parent=Msa0083200-mRNA-1
chr1_2 CDS 62260411 62260476 62260411 ID=Msa0083200-mRNA-1:cds;Parent=Msa0083200-mRNA-1
chr1_2 CDS 62260140 62260320 62260140 ID=Msa0083200-mRNA-1:cds;Parent=Msa0083200-mRNA-1
chr1_2 CDS 62259531 62259945 62259531 ID=Msa0083200-mRNA-1:cds;Parent=Msa0083200-mRNA-1
chr1_2 CDS 62258648 62258728 62258648 ID=Msa0083200-mRNA-1:cds;Parent=Msa0083200-mRNA-1
chr1_2 CDS 62257724 62258219 62257724 ID=Msa0083200-mRNA-1:cds;Parent=Msa0083200-mRNA-1
chr1_2 three_prime_UTR 62257307 62257723 62257307 ID=Msa0083200-mRNA-1:three_prime_utr;Parent=Msa0083200-mRNA-1
Gene Sequence

>Msa0083200

ATGATGATTCAGAAACTTACTTTGATGGCTTCTCATGGATTTCCATCTCAAGAATATGCCATGAAGGGTTGTCAACAATTGGTGCCTTGTTATGCACCAAAACCAGATATTATTAGATATCAGAGTCCAAATCTTAGGTTAAATTCATCTGATGAATCAAGAATGACATCAAAAGAGTGGTTCAATTCAAATCAGTTTGTTGATTTTGATTTGCTAGCTTTAAAGCCAATGGTTATTGACGAACAAGCAACTTGTCCAAGCACTATACTTTTGAGCTTTGGCGTCGTTGATCAATGCACCGAGCATGATAAAACTTCACAGTGTATCACATCTAAGACTGCTGAAGCAGGTTTAGATGGTATTCGTAAAGCTTTGTTGTCTGACTTGATGGGTTTGCAACTTTCAGGGATTAATATACCTCAAATATCATTGCATCCTCTCATCTACCCAAATAGGACTTTCTACATCTCGAAGCCTTTGCTTGATTTTTTTCAAGATTCAGCCCTTAGTTCAAAAATTACTGTTCATCTAAATGGTCAAGTCACGTTTATGGGTACTGAAATTGAGATGAAAGATTTTCTTGCTATAGTTGCTGAGTCATACGTATCAAAACGCACACATACAGGCGAAAAACAGTCTATGCTTGTTCCATACTTCACTAGGCTGAATATAAATGAAGTAGAGGCCAGAAGCATTTCCCCCACATTGGATATTCACTCTACACTGACCATTCCTTTAAAAAGTCCGAAGAAAGTCAAAGCCAATCCATCACGAAAAAAGAAAAAGAAAGTAGCCAGGGAGAGGGATCTGTTCAAGAAGAACTACATTCATGCATGTGAGAGCCTTCTGTTCTTGATGGCTGATAAGAGGCATCGTCGGGAAACAGCAGTTCTTTCACTGAAGAAATCAGGTCCGGAGCTTCCCGAGCTCCTTACACAATTCTCTGCTGGCATTGCTGGTACTGGCCTTGCTGTCGTGCTATCTGTGATCTGCAAACTAGCTTGTGGAAGGGCCCCCTTTTGTGCGTCTAAGGTCTTCAACACAGGGTTGGGTTTTGGGCTTATTTGGCTTTCTTGGGGAGTAAATAAGCTGAGGGATACAATTGTTAACATAAGCAAGAATGCTGGAAAGATGGGATTGAAAGATGAGGAAATGATTCAAAAAGTGGATAAGAGTCTAAAAGAAGTTTACTTTAGAGCTGCAGCGTTGCTAGTAGTGGCAGTGCTAAGGCTTGCTTGA

Protein sequence

>Msa0083200

MMIQKLTLMASHGFPSQEYAMKGCQQLVPCYAPKPDIIRYQSPNLRLNSSDESRMTSKEWFNSNQFVDFDLLALKPMVIDEQATCPSTILLSFGVVDQCTEHDKTSQCITSKTAEAGLDGIRKALLSDLMGLQLSGINIPQISLHPLIYPNRTFYISKPLLDFFQDSALSSKITVHLNGQVTFMGTEIEMKDFLAIVAESYVSKRTHTGEKQSMLVPYFTRLNINEVEARSISPTLDIHSTLTIPLKSPKKVKANPSRKKKKKVARERDLFKKNYIHACESLLFLMADKRHRRETAVLSLKKSGPELPELLTQFSAGIAGTGLAVVLSVICKLACGRAPFCASKVFNTGLGFGLIWLSWGVNKLRDTIVNISKNAGKMGLKDEEMIQKVDKSLKEVYFRAAALLVVAVLRLA*