AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175480 MtrunA17_Chr1g0196611 92.231 399 30 1 1 398 1 399 0.0 743
Msa0175480 MtrunA17_Chr7g0259491 57.656 418 169 3 2 412 1 417 1.39e-166 473
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175480 AT4G02920.2 37.674 430 232 11 5 412 3 418 8.67e-83 260
Msa0175480 AT4G02920.1 37.915 422 241 10 5 412 3 417 1.87e-82 259
Msa0175480 AT1G03340.1 34.722 360 200 8 56 412 58 385 1.58e-53 183

Find 106 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACACAGGGTTGGGTTT+TGG 0.134883 1_4:+61435749 Msa0175480:CDS
TTGGGCTTATTTGGCTTTCT+TGG 0.139996 1_4:+61435768 Msa0175480:CDS
TCATCTCATGCAATCATATT+TGG 0.156230 1_4:+61436322 Msa0175480:three_prime_UTR
CCACTAAAGGAGGGGAATTT+TGG 0.166638 1_4:+61432966 Msa0175480:five_prime_UTR
GAGATGTAGAAATTCCTATT+TGG 0.209369 1_4:-61433898 None:intergenic
AAATGGTCAAGTCACGTTTA+TGG 0.221667 1_4:+61433981 Msa0175480:CDS
CACTGACCGTTCCTTTAAAA+AGG 0.233508 1_4:+61435012 Msa0175480:CDS
AAAATTACTGTTCATCTAAA+TGG 0.237725 1_4:+61433964 Msa0175480:CDS
TTGATGGGTTTGCAACTATC+AGG 0.248405 1_4:+61433835 Msa0175480:CDS
TGGGCTTATTTGGCTTTCTT+GGG 0.252384 1_4:+61435769 Msa0175480:CDS
CCAAAATTCCCCTCCTTTAG+TGG 0.277551 1_4:-61432966 None:intergenic
GATATCAGAGTCCAAATCTT+AGG 0.281870 1_4:+61433233 Msa0175480:CDS
GATGAATTTAACCTAAGATT+TGG 0.287708 1_4:-61433244 None:intergenic
TGAGAGCCTTCTGTTCTTGA+TGG 0.290630 1_4:+61435550 Msa0175480:CDS
TGGTATGATTATTACCTATT+AGG 0.291086 1_4:+61436116 Msa0175480:three_prime_UTR
GATTCAGAAACTTACTTTGA+TGG 0.292699 1_4:+61433035 Msa0175480:CDS
CAATTCTCTGCTGGCATTGC+TGG 0.299676 1_4:+61435650 Msa0175480:CDS
GACAATTAAAACTACCTAAT+AGG 0.315326 1_4:-61436130 None:intergenic
ATTCTCTCATCTACCCAAAT+AGG 0.325349 1_4:+61433884 Msa0175480:CDS
GGTTTCCCCTTTCTTCATAA+AGG 0.340088 1_4:+61436262 Msa0175480:three_prime_UTR
CTCTGATATCTAATAATATC+TGG 0.353756 1_4:-61433220 None:intergenic
GGATTGGCTTTGACTTTCTT+CGG 0.356219 1_4:-61435458 None:intergenic
TTCACCTAAGCTTTGACATT+TGG 0.358783 1_4:+61436079 Msa0175480:three_prime_UTR
TATCTAATAATATCTGGTTT+TGG 0.360696 1_4:-61433214 None:intergenic
AGCTTTGTTGTCTGACTTGA+TGG 0.364159 1_4:+61433819 Msa0175480:CDS
AATGGTCAAGTCACGTTTAT+GGG 0.369340 1_4:+61433982 Msa0175480:CDS
GTTCTTTCACTGAAGAAATC+AGG 0.382585 1_4:+61435602 Msa0175480:CDS
AGATGTAGAAATTCCTATTT+GGG 0.383642 1_4:-61433897 None:intergenic
AAGATAAACTGTAAAGTCTA+AGG 0.385352 1_4:+61436191 Msa0175480:three_prime_UTR
TCTGCTGGCATTGCTGGTAC+TGG 0.385638 1_4:+61435656 Msa0175480:CDS
AAGGTCTTCAACACAGGGTT+GGG 0.391495 1_4:+61435743 Msa0175480:CDS
ATGATAGGGTTGTCAACAAT+TGG 0.402315 1_4:+61433177 Msa0175480:intron
TGTACATACCTAGTGAAGTA+TGG 0.405041 1_4:-61434099 None:intergenic
AACCGTTGTATCTGATTTGT+TGG 0.412329 1_4:+61436002 Msa0175480:three_prime_UTR
TATGTAACCTTTATGAAGAA+AGG 0.413592 1_4:-61436269 None:intergenic
ATTTGGCTTGATCATCACTA+TGG 0.414828 1_4:+61436096 Msa0175480:three_prime_UTR
AAGCAAGAATGCTGGAAAGA+TGG 0.436409 1_4:+61435826 Msa0175480:CDS
AGAGAATGCAATGATATTTG+AGG 0.446652 1_4:-61433868 None:intergenic
AGCAAGAATGCTGGAAAGAT+GGG 0.449740 1_4:+61435827 Msa0175480:CDS
TGTTCTTGATGGCTGATAAG+AGG 0.453397 1_4:+61435561 Msa0175480:CDS
AAATGCTTACATTACTTGCT+TGG 0.454470 1_4:-61436152 None:intergenic
GAGAATTGTGTAAGGAGCTC+GGG 0.454630 1_4:-61435635 None:intergenic
ATGTAACCTTTATGAAGAAA+GGG 0.457583 1_4:-61436268 None:intergenic
CTATCACTTCAGCAGCCATC+AGG 0.462770 1_4:-61436033 None:intergenic
GAAGACCTTAGACGCACAAA+AGG 0.465886 1_4:-61435729 None:intergenic
ACTGCTGAAGCAGGTGTAGA+TGG 0.468818 1_4:+61433787 Msa0175480:CDS
GCGTCTAAGGTCTTCAACAC+AGG 0.476430 1_4:+61435737 Msa0175480:CDS
CTTACTTTGATGGCTTCTCA+TGG 0.481501 1_4:+61433045 Msa0175480:CDS
GGCTGATAAGAGGCATCGTC+GGG 0.482476 1_4:+61435571 Msa0175480:CDS
TTCACTGAAGAAATCAGGTC+CGG 0.487415 1_4:+61435607 Msa0175480:CDS
CAAGCCAAATGTCAAAGCTT+AGG 0.491076 1_4:-61436083 None:intergenic
AAGCATTTGCTTGGCTTTAG+CGG 0.496226 1_4:+61436167 Msa0175480:three_prime_UTR
TGCTAGTAGTGGCAGTGCTA+AGG 0.499557 1_4:+61435921 Msa0175480:CDS
CTCCTTACACAATTCTCTGC+TGG 0.505017 1_4:+61435641 Msa0175480:CDS
TTGTTGGATGTTCAGCCTGA+TGG 0.508069 1_4:+61436018 Msa0175480:three_prime_UTR
GGGCTTATTTGGCTTTCTTG+GGG 0.508276 1_4:+61435770 Msa0175480:CDS
GTAAGGAGCTCGGGAAGCTC+CGG 0.511742 1_4:-61435626 None:intergenic
GTATCAAAACGCACACATAC+AGG 0.515015 1_4:+61434054 Msa0175480:CDS
AAGACCTTAGACGCACAAAA+GGG 0.516732 1_4:-61435728 None:intergenic
TTCATGGCATATTCTTGAGA+TGG 0.519316 1_4:-61433072 None:intergenic
AAGCTGAAAAGTACAGTGCT+TGG 0.520108 1_4:-61433706 None:intergenic
AAGTAATGTAAGCATTTGCT+TGG 0.525023 1_4:+61436158 Msa0175480:three_prime_UTR
TAAGGTCTTCAACACAGGGT+TGG 0.534621 1_4:+61435742 Msa0175480:CDS
TTATGAAGAAAGGGGAAACC+TGG 0.535086 1_4:-61436259 None:intergenic
AGAGAATTGTGTAAGGAGCT+CGG 0.542826 1_4:-61435636 None:intergenic
GTAGAGTGAATATCCAATGC+GGG 0.543199 1_4:-61434990 None:intergenic
AAAAGAAAGTAGCCAGGGAG+AGG 0.544026 1_4:+61435495 Msa0175480:CDS
ATCTCAAGAATATGCCATGA+AGG 0.545054 1_4:+61433074 Msa0175480:CDS
CTTGAACAGATCCCTCTCCC+TGG 0.545602 1_4:-61435507 None:intergenic
ACATCTGAGACTGCTGAAGC+AGG 0.548211 1_4:+61433778 Msa0175480:CDS
AGCTGCAGCGTTGCTAGTAG+TGG 0.549465 1_4:+61435910 Msa0175480:CDS
GTTAACATAAGCAAGAATGC+TGG 0.550226 1_4:+61435818 Msa0175480:CDS
TTTGATAGAACCACTAAAGG+AGG 0.550497 1_4:+61432956 Msa0175480:five_prime_UTR
TGATGGGTTTGCAACTATCA+GGG 0.550930 1_4:+61433836 Msa0175480:CDS
CCAACGGTTATTGATGTACA+AGG 0.561376 1_4:+61433343 Msa0175480:CDS
TGGCTGCTGAAGTGATAGCC+AGG 0.563013 1_4:+61436038 Msa0175480:three_prime_UTR
GCTTTGTTGTCTGACTTGAT+GGG 0.563096 1_4:+61433820 Msa0175480:CDS
TTGATAGAACCACTAAAGGA+GGG 0.568454 1_4:+61432957 Msa0175480:five_prime_UTR
TGATAGAACCACTAAAGGAG+GGG 0.569281 1_4:+61432958 Msa0175480:five_prime_UTR
CCTTGTACATCAATAACCGT+TGG 0.573161 1_4:-61433343 None:intergenic
TGCCAGCAGAGAATTGTGTA+AGG 0.578242 1_4:-61435643 None:intergenic
GCTGAATATAAATGAAGTAG+AGG 0.580301 1_4:+61434953 Msa0175480:CDS
TGGCTGATAAGAGGCATCGT+CGG 0.580551 1_4:+61435570 Msa0175480:CDS
CTTGGGGAGTAAATAAGCTG+AGG 0.580784 1_4:+61435786 Msa0175480:CDS
TATCAGCCATCAAGAACAGA+AGG 0.589403 1_4:-61435556 None:intergenic
TATTTCAGCTCTAAAGCCAA+CGG 0.594762 1_4:+61433327 Msa0175480:CDS
TGCTTGTTCCATACTTCACT+AGG 0.596244 1_4:+61434091 Msa0175480:CDS
AAAGAAAGTAGCCAGGGAGA+GGG 0.598067 1_4:+61435496 Msa0175480:CDS
GACCTTAGACGCACAAAAGG+GGG 0.599512 1_4:-61435726 None:intergenic
CAAGAATGCCATCAAAAGAG+TGG 0.606435 1_4:+61433275 Msa0175480:CDS
CGTCTAAGGTCTTCAACACA+GGG 0.609157 1_4:+61435738 Msa0175480:CDS
GGTTTAGTGAAAATGTTACC+AGG 0.609638 1_4:+61436241 Msa0175480:three_prime_UTR
TCTGCAAACTAGCTTGCGGA+AGG 0.611580 1_4:+61435702 Msa0175480:CDS
TTGGGGAGTAAATAAGCTGA+GGG 0.614442 1_4:+61435787 Msa0175480:CDS
TGTAACCTTTATGAAGAAAG+GGG 0.622798 1_4:-61436267 None:intergenic
AAAGATGGGATTGAAAGATG+AGG 0.631344 1_4:+61435841 Msa0175480:CDS
GTGATCTGCAAACTAGCTTG+CGG 0.634286 1_4:+61435698 Msa0175480:CDS
AGACCTTAGACGCACAAAAG+GGG 0.635020 1_4:-61435727 None:intergenic
AAATGTCAAAGCTTAGGTGA+AGG 0.636141 1_4:-61436077 None:intergenic
TAGAGTGAATATCCAATGCG+GGG 0.642303 1_4:-61434989 None:intergenic
ATCCAACAAATCAGATACAA+CGG 0.645213 1_4:-61436004 None:intergenic
GTTGCAATGAATGAACTGAC+TGG 0.649728 1_4:+61436220 Msa0175480:three_prime_UTR
CTGCAAACTAGCTTGCGGAA+GGG 0.661355 1_4:+61435703 Msa0175480:CDS
TCACAGATAGCACGACAGCA+AGG 0.673650 1_4:-61435679 None:intergenic
TGTAGAGTGAATATCCAATG+CGG 0.714818 1_4:-61434991 None:intergenic
AGAGTGAATATCCAATGCGG+GGG 0.722783 1_4:-61434988 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAATTTTTTTTTTATGAT+AGG + chr1_4:61433162-61433181 Msa0175480:intron 10.0%
!!! TGAATTTTTTTTTTATGATA+GGG + chr1_4:61433163-61433182 Msa0175480:intron 10.0%
!! GTTATATTTATAATTAAATC+CGG - chr1_4:61434250-61434269 None:intergenic 10.0%
!!! TAAACGCAATTTTTTTTTTT+TGG - chr1_4:61432905-61432924 None:intergenic 15.0%
!! AAAAAAAAATTGCGTTTAAA+AGG + chr1_4:61432907-61432926 Msa0175480:five_prime_UTR 15.0%
!! TATACACAAATTCAATAAAT+TGG - chr1_4:61433376-61433395 None:intergenic 15.0%
!!! ATATTTTGATTATACAATGT+TGG + chr1_4:61433403-61433422 Msa0175480:intron 15.0%
!! ATAATAGAAAACAATATTCA+GGG + chr1_4:61434183-61434202 Msa0175480:intron 15.0%
!! TAACATCAAATTTAAAAACT+TGG + chr1_4:61434266-61434285 Msa0175480:intron 15.0%
!! AAAATGCATAAAATTAAAGT+CGG - chr1_4:61435214-61435233 None:intergenic 15.0%
!!! TTTTTTTTGAGAGAGAATTT+TGG - chr1_4:61433000-61433019 None:intergenic 20.0%
!!! TACTAATAATTTTACCTTCA+TGG - chr1_4:61433091-61433110 None:intergenic 20.0%
!!! TATCTAATAATATCTGGTTT+TGG - chr1_4:61433217-61433236 None:intergenic 20.0%
!! CTCATAAAAAATATACAACA+TGG - chr1_4:61433496-61433515 None:intergenic 20.0%
!!! AAGTAATGTAACTTATCTTT+TGG + chr1_4:61433669-61433688 Msa0175480:intron 20.0%
!!! AACAGTAATTTTTGAACTAA+GGG - chr1_4:61433956-61433975 None:intergenic 20.0%
!! AAAATTACTGTTCATCTAAA+TGG + chr1_4:61433964-61433983 Msa0175480:CDS 20.0%
!! TGTGATCAATTGAATTTAAA+CGG - chr1_4:61434134-61434153 None:intergenic 20.0%
!! CATAATAGAAAACAATATTC+AGG + chr1_4:61434182-61434201 Msa0175480:intron 20.0%
!!! CACATTTAAAAATGCATTTT+TGG - chr1_4:61434292-61434311 None:intergenic 20.0%
!!! TAAATTTGTCGTACATATTT+TGG + chr1_4:61434465-61434484 Msa0175480:intron 20.0%
!! TTTATCGAATTTATCTAACT+AGG + chr1_4:61434673-61434692 Msa0175480:intron 20.0%
!! GTTAAAGTAGTAAAAATCAA+TGG + chr1_4:61434748-61434767 Msa0175480:intron 20.0%
!! CAAGAATAGAATATTGAATA+TGG - chr1_4:61434884-61434903 None:intergenic 20.0%
!! AAATGCATAAAATTAAAGTC+GGG - chr1_4:61435213-61435232 None:intergenic 20.0%
!!! CGCAATTTTTTTTTTTTGGT+TGG - chr1_4:61432901-61432920 None:intergenic 25.0%
! CTCTGATATCTAATAATATC+TGG - chr1_4:61433223-61433242 None:intergenic 25.0%
! GATGAATTTAACCTAAGATT+TGG - chr1_4:61433247-61433266 None:intergenic 25.0%
! GAATATTACTATATCAGTCA+TGG + chr1_4:61433546-61433565 Msa0175480:intron 25.0%
!! ACTTATGTTGCTAAATCTTT+TGG + chr1_4:61433604-61433623 Msa0175480:intron 25.0%
! AGATGTAGAAATTCCTATTT+GGG - chr1_4:61433900-61433919 None:intergenic 25.0%
! TCTTGAAAAAAATCAAGCAA+AGG - chr1_4:61433928-61433947 None:intergenic 25.0%
!! GAACAGTAATTTTTGAACTA+AGG - chr1_4:61433957-61433976 None:intergenic 25.0%
! ATAGCTGTAAATTTGATCAT+TGG + chr1_4:61434575-61434594 Msa0175480:intron 25.0%
! TAGCTGTAAATTTGATCATT+GGG + chr1_4:61434576-61434595 Msa0175480:intron 25.0%
!! TATTCTACCTACCTTTTTAA+AGG - chr1_4:61435026-61435045 None:intergenic 25.0%
!! AATATGTTTTCCATGACAAT+TGG + chr1_4:61435042-61435061 Msa0175480:intron 25.0%
! TTTCTCTTAAAATTTGAGCT+AGG - chr1_4:61435268-61435287 None:intergenic 25.0%
!!! AGGGAATCAAGTTTTATTTT+TGG + chr1_4:61435301-61435320 Msa0175480:intron 25.0%
!!! GGGAATCAAGTTTTATTTTT+GGG + chr1_4:61435302-61435321 Msa0175480:intron 25.0%
!!! TTCTTTTTCTTTTTTCGTGA+TGG - chr1_4:61435482-61435501 None:intergenic 25.0%
! TGGTATGATTATTACCTATT+AGG + chr1_4:61436116-61436135 Msa0175480:three_prime_UTR 25.0%
! GACAATTAAAACTACCTAAT+AGG - chr1_4:61436133-61436152 None:intergenic 25.0%
! AAGATAAACTGTAAAGTCTA+AGG + chr1_4:61436191-61436210 Msa0175480:three_prime_UTR 25.0%
! ATGTAACCTTTATGAAGAAA+GGG - chr1_4:61436271-61436290 None:intergenic 25.0%
! TATGTAACCTTTATGAAGAA+AGG - chr1_4:61436272-61436291 None:intergenic 25.0%
! GTTTTTGATAGAACCACTAA+AGG + chr1_4:61432953-61432972 Msa0175480:five_prime_UTR 30.0%
GATTCAGAAACTTACTTTGA+TGG + chr1_4:61433035-61433054 Msa0175480:CDS 30.0%
TCAAGCATTCTACTAATACA+TGG - chr1_4:61433454-61433473 None:intergenic 30.0%
AGTAGAATGCTTGAATTGAA+AGG + chr1_4:61433460-61433479 Msa0175480:intron 30.0%
AGAGAATGCAATGATATTTG+AGG - chr1_4:61433871-61433890 None:intergenic 30.0%
GAGATGTAGAAATTCCTATT+TGG - chr1_4:61433901-61433920 None:intergenic 30.0%
! ATGTTAAAGCTTTATCATGC+AGG - chr1_4:61434356-61434375 None:intergenic 30.0%
AGGCAACAAATACAAAAATC+AGG + chr1_4:61434693-61434712 Msa0175480:intron 30.0%
! ACTTTTGCTGAAAATCTACA+TGG + chr1_4:61434926-61434945 Msa0175480:intron 30.0%
GCTGAATATAAATGAAGTAG+AGG + chr1_4:61434953-61434972 Msa0175480:CDS 30.0%
!! TACCTACCTTTTTAAAGGAA+CGG - chr1_4:61435021-61435040 None:intergenic 30.0%
! ATTTTGCGTATGTCAAATTC+AGG - chr1_4:61435074-61435093 None:intergenic 30.0%
TACGCAAAATATGCTGTTAT+AGG + chr1_4:61435084-61435103 Msa0175480:intron 30.0%
TCTATCCTCTGTAAAACAAA+TGG + chr1_4:61435141-61435160 Msa0175480:intron 30.0%
!!! ATGATCCATTTGTTTTACAG+AGG - chr1_4:61435149-61435168 None:intergenic 30.0%
CTGTAAAACAAATGGATCAT+TGG + chr1_4:61435149-61435168 Msa0175480:intron 30.0%
!! GAGAGCTTTTACTCTAAAAA+TGG + chr1_4:61435175-61435194 Msa0175480:intron 30.0%
TTTGTTTCCTTCATATGATG+TGG + chr1_4:61435231-61435250 Msa0175480:intron 30.0%
AGAGAAATAATCATCAGATG+AGG + chr1_4:61435281-61435300 Msa0175480:intron 30.0%
GAGAAATAATCATCAGATGA+GGG + chr1_4:61435282-61435301 Msa0175480:intron 30.0%
!!! TTTCTTTTTTCGTGATGGAT+TGG - chr1_4:61435477-61435496 None:intergenic 30.0%
AAAAGAAAAAGAAAGTAGCC+AGG + chr1_4:61435489-61435508 Msa0175480:CDS 30.0%
AAAGAAAAAGAAAGTAGCCA+GGG + chr1_4:61435490-61435509 Msa0175480:CDS 30.0%
TGAGGAAATGATTCAAAAAG+TGG + chr1_4:61435859-61435878 Msa0175480:CDS 30.0%
ATCCAACAAATCAGATACAA+CGG - chr1_4:61436007-61436026 None:intergenic 30.0%
AAATGCTTACATTACTTGCT+TGG - chr1_4:61436155-61436174 None:intergenic 30.0%
AAGTAATGTAAGCATTTGCT+TGG + chr1_4:61436158-61436177 Msa0175480:three_prime_UTR 30.0%
TGTAACCTTTATGAAGAAAG+GGG - chr1_4:61436270-61436289 None:intergenic 30.0%
TCATCTCATGCAATCATATT+TGG + chr1_4:61436322-61436341 Msa0175480:three_prime_UTR 30.0%
TTTGATAGAACCACTAAAGG+AGG + chr1_4:61432956-61432975 Msa0175480:five_prime_UTR 35.0%
TTGATAGAACCACTAAAGGA+GGG + chr1_4:61432957-61432976 Msa0175480:five_prime_UTR 35.0%
TTCATGGCATATTCTTGAGA+TGG - chr1_4:61433075-61433094 None:intergenic 35.0%
ATCTCAAGAATATGCCATGA+AGG + chr1_4:61433074-61433093 Msa0175480:CDS 35.0%
ATGATAGGGTTGTCAACAAT+TGG + chr1_4:61433177-61433196 Msa0175480:intron 35.0%
GATATCAGAGTCCAAATCTT+AGG + chr1_4:61433233-61433252 Msa0175480:CDS 35.0%
! GAATTGAACCACTCTTTTGA+TGG - chr1_4:61433286-61433305 None:intergenic 35.0%
!! TATTTCAGCTCTAAAGCCAA+CGG + chr1_4:61433327-61433346 Msa0175480:CDS 35.0%
!! CTGCAAAGTTTTATCATGCT+CGG - chr1_4:61433752-61433771 None:intergenic 35.0%
ATTCTCTCATCTACCCAAAT+AGG + chr1_4:61433884-61433903 Msa0175480:CDS 35.0%
AAATGGTCAAGTCACGTTTA+TGG + chr1_4:61433981-61434000 Msa0175480:CDS 35.0%
AATGGTCAAGTCACGTTTAT+GGG + chr1_4:61433982-61434001 Msa0175480:CDS 35.0%
TGTACATACCTAGTGAAGTA+TGG - chr1_4:61434102-61434121 None:intergenic 35.0%
TCACTAGGTATGTACATATG+TGG + chr1_4:61434106-61434125 Msa0175480:intron 35.0%
TCACATGAAATCCTTCTGTT+TGG + chr1_4:61434149-61434168 Msa0175480:intron 35.0%
CACATGAAATCCTTCTGTTT+GGG + chr1_4:61434150-61434169 Msa0175480:intron 35.0%
AACAATATTCAGGGACTTCT+TGG + chr1_4:61434192-61434211 Msa0175480:intron 35.0%
GTCAATCTATTGATCAACAC+CGG + chr1_4:61434228-61434247 Msa0175480:intron 35.0%
AAACAGAGTCACATGCATAT+GGG - chr1_4:61434628-61434647 None:intergenic 35.0%
AAAACAGAGTCACATGCATA+TGG - chr1_4:61434629-61434648 None:intergenic 35.0%
TGTAGAGTGAATATCCAATG+CGG - chr1_4:61434994-61435013 None:intergenic 35.0%
ACTCAATCCACATCATATGA+AGG - chr1_4:61435241-61435260 None:intergenic 35.0%
! CATATGATGTGGATTGAGTT+AGG + chr1_4:61435242-61435261 Msa0175480:intron 35.0%
CAAATACTGTGATCACTGTA+TGG - chr1_4:61435392-61435411 None:intergenic 35.0%
GTTCTTTCACTGAAGAAATC+AGG + chr1_4:61435602-61435621 Msa0175480:CDS 35.0%
GTTAACATAAGCAAGAATGC+TGG + chr1_4:61435818-61435837 Msa0175480:CDS 35.0%
AAAGATGGGATTGAAAGATG+AGG + chr1_4:61435841-61435860 Msa0175480:CDS 35.0%
! AACCGTTGTATCTGATTTGT+TGG + chr1_4:61436002-61436021 Msa0175480:three_prime_UTR 35.0%
AAATGTCAAAGCTTAGGTGA+AGG - chr1_4:61436080-61436099 None:intergenic 35.0%
! TTCACCTAAGCTTTGACATT+TGG + chr1_4:61436079-61436098 Msa0175480:three_prime_UTR 35.0%
!! ATTTGGCTTGATCATCACTA+TGG + chr1_4:61436096-61436115 Msa0175480:three_prime_UTR 35.0%
GGTTTAGTGAAAATGTTACC+AGG + chr1_4:61436241-61436260 Msa0175480:three_prime_UTR 35.0%
TGATAGAACCACTAAAGGAG+GGG + chr1_4:61432958-61432977 Msa0175480:five_prime_UTR 40.0%
! CTTACTTTGATGGCTTCTCA+TGG + chr1_4:61433045-61433064 Msa0175480:CDS 40.0%
!!! TCTGGTTTTGGTGCATAACA+AGG - chr1_4:61433205-61433224 None:intergenic 40.0%
CAAGAATGCCATCAAAAGAG+TGG + chr1_4:61433275-61433294 Msa0175480:CDS 40.0%
CCTTGTACATCAATAACCGT+TGG - chr1_4:61433346-61433365 None:intergenic 40.0%
CCAACGGTTATTGATGTACA+AGG + chr1_4:61433343-61433362 Msa0175480:CDS 40.0%
TACTATATCAGTCATGGTGC+CGG + chr1_4:61433552-61433571 Msa0175480:intron 40.0%
GACAATCCTCTACATATCAC+CGG - chr1_4:61433574-61433593 None:intergenic 40.0%
! AAGCTGAAAAGTACAGTGCT+TGG - chr1_4:61433709-61433728 None:intergenic 40.0%
! AGCACTGTACTTTTCAGCTT+TGG + chr1_4:61433709-61433728 Msa0175480:CDS 40.0%
!! AGCTTTGTTGTCTGACTTGA+TGG + chr1_4:61433819-61433838 Msa0175480:CDS 40.0%
! GCTTTGTTGTCTGACTTGAT+GGG + chr1_4:61433820-61433839 Msa0175480:CDS 40.0%
!! TTGATGGGTTTGCAACTATC+AGG + chr1_4:61433835-61433854 Msa0175480:CDS 40.0%
!! TGATGGGTTTGCAACTATCA+GGG + chr1_4:61433836-61433855 Msa0175480:CDS 40.0%
GTATCAAAACGCACACATAC+AGG + chr1_4:61434054-61434073 Msa0175480:CDS 40.0%
TGCTTGTTCCATACTTCACT+AGG + chr1_4:61434091-61434110 Msa0175480:CDS 40.0%
GACAAAGTAACCCAAACAGA+AGG - chr1_4:61434163-61434182 None:intergenic 40.0%
TCGAGTGTATTGTCTGATAC+TGG + chr1_4:61434319-61434338 Msa0175480:intron 40.0%
AGTGTATTGTCTGATACTGG+AGG + chr1_4:61434322-61434341 Msa0175480:intron 40.0%
GTTTGTCGGAAACTTAGTTC+AGG - chr1_4:61434804-61434823 None:intergenic 40.0%
GCGTAACTTCAAAGGTTTGT+CGG - chr1_4:61434818-61434837 None:intergenic 40.0%
TGCTGAAAATCTACATGGAC+AGG + chr1_4:61434931-61434950 Msa0175480:intron 40.0%
TAGAGTGAATATCCAATGCG+GGG - chr1_4:61434992-61435011 None:intergenic 40.0%
GTAGAGTGAATATCCAATGC+GGG - chr1_4:61434993-61435012 None:intergenic 40.0%
! CACTGACCGTTCCTTTAAAA+AGG + chr1_4:61435012-61435031 Msa0175480:CDS 40.0%
! GACCGTTCCTTTAAAAAGGT+AGG + chr1_4:61435016-61435035 Msa0175480:intron 40.0%
TTGCGTATGTCAAATTCAGG+AGG - chr1_4:61435071-61435090 None:intergenic 40.0%
GCACATGAGACTATCAACAA+TGG - chr1_4:61435367-61435386 None:intergenic 40.0%
!! GGATTGGCTTTGACTTTCTT+CGG - chr1_4:61435461-61435480 None:intergenic 40.0%
TATCAGCCATCAAGAACAGA+AGG - chr1_4:61435559-61435578 None:intergenic 40.0%
! TGTTCTTGATGGCTGATAAG+AGG + chr1_4:61435561-61435580 Msa0175480:CDS 40.0%
TTCACTGAAGAAATCAGGTC+CGG + chr1_4:61435607-61435626 Msa0175480:CDS 40.0%
AGAGAATTGTGTAAGGAGCT+CGG - chr1_4:61435639-61435658 None:intergenic 40.0%
AAGACCTTAGACGCACAAAA+GGG - chr1_4:61435731-61435750 None:intergenic 40.0%
!! TTGGGCTTATTTGGCTTTCT+TGG + chr1_4:61435768-61435787 Msa0175480:CDS 40.0%
!! TGGGCTTATTTGGCTTTCTT+GGG + chr1_4:61435769-61435788 Msa0175480:CDS 40.0%
TTGGGGAGTAAATAAGCTGA+GGG + chr1_4:61435787-61435806 Msa0175480:CDS 40.0%
AAGCAAGAATGCTGGAAAGA+TGG + chr1_4:61435826-61435845 Msa0175480:CDS 40.0%
AGCAAGAATGCTGGAAAGAT+GGG + chr1_4:61435827-61435846 Msa0175480:CDS 40.0%
!!! GGTACAGTTGTTTTGAAACC+TGG - chr1_4:61436059-61436078 None:intergenic 40.0%
CAAGCCAAATGTCAAAGCTT+AGG - chr1_4:61436086-61436105 None:intergenic 40.0%
!! AAGCATTTGCTTGGCTTTAG+CGG + chr1_4:61436167-61436186 Msa0175480:three_prime_UTR 40.0%
GTTGCAATGAATGAACTGAC+TGG + chr1_4:61436220-61436239 Msa0175480:three_prime_UTR 40.0%
TTATGAAGAAAGGGGAAACC+TGG - chr1_4:61436262-61436281 None:intergenic 40.0%
GGTTTCCCCTTTCTTCATAA+AGG + chr1_4:61436262-61436281 Msa0175480:three_prime_UTR 40.0%
CCAAAATTCCCCTCCTTTAG+TGG - chr1_4:61432969-61432988 None:intergenic 45.0%
! CCACTAAAGGAGGGGAATTT+TGG + chr1_4:61432966-61432985 Msa0175480:five_prime_UTR 45.0%
CATGTTACTCTTGTCTTGCC+AGG + chr1_4:61434510-61434529 Msa0175480:intron 45.0%
!! CAGGAGTGCTGTGTTAGTTT+GGG + chr1_4:61434529-61434548 Msa0175480:intron 45.0%
AGTCACATGCATATGGGATC+AGG - chr1_4:61434622-61434641 None:intergenic 45.0%
TCACTATGCAAGAACAAGGC+AGG - chr1_4:61434774-61434793 None:intergenic 45.0%
GGACTCACTATGCAAGAACA+AGG - chr1_4:61434778-61434797 None:intergenic 45.0%
TCGGAAACTTAGTTCAGGCA+GGG - chr1_4:61434799-61434818 None:intergenic 45.0%
GCACGTATGCGTAACTTCAA+AGG - chr1_4:61434826-61434845 None:intergenic 45.0%
AGAGTGAATATCCAATGCGG+GGG - chr1_4:61434991-61435010 None:intergenic 45.0%
AAAAGAAAGTAGCCAGGGAG+AGG + chr1_4:61435495-61435514 Msa0175480:CDS 45.0%
AAAGAAAGTAGCCAGGGAGA+GGG + chr1_4:61435496-61435515 Msa0175480:CDS 45.0%
TGAGAGCCTTCTGTTCTTGA+TGG + chr1_4:61435550-61435569 Msa0175480:CDS 45.0%
GAGAATTGTGTAAGGAGCTC+GGG - chr1_4:61435638-61435657 None:intergenic 45.0%
CTCCTTACACAATTCTCTGC+TGG + chr1_4:61435641-61435660 Msa0175480:CDS 45.0%
TGCCAGCAGAGAATTGTGTA+AGG - chr1_4:61435646-61435665 None:intergenic 45.0%
! GTGATCTGCAAACTAGCTTG+CGG + chr1_4:61435698-61435717 Msa0175480:CDS 45.0%
AGACCTTAGACGCACAAAAG+GGG - chr1_4:61435730-61435749 None:intergenic 45.0%
GAAGACCTTAGACGCACAAA+AGG - chr1_4:61435732-61435751 None:intergenic 45.0%
! CGTCTAAGGTCTTCAACACA+GGG + chr1_4:61435738-61435757 Msa0175480:CDS 45.0%
TAAGGTCTTCAACACAGGGT+TGG + chr1_4:61435742-61435761 Msa0175480:CDS 45.0%
AAGGTCTTCAACACAGGGTT+GGG + chr1_4:61435743-61435762 Msa0175480:CDS 45.0%
! TTCAACACAGGGTTGGGTTT+TGG + chr1_4:61435749-61435768 Msa0175480:CDS 45.0%
! TCAACACAGGGTTGGGTTTT+GGG + chr1_4:61435750-61435769 Msa0175480:CDS 45.0%
!!! GGTTGGGTTTTGGGCTTATT+TGG + chr1_4:61435759-61435778 Msa0175480:CDS 45.0%
!! GGGCTTATTTGGCTTTCTTG+GGG + chr1_4:61435770-61435789 Msa0175480:CDS 45.0%
CTTGGGGAGTAAATAAGCTG+AGG + chr1_4:61435786-61435805 Msa0175480:CDS 45.0%
TTGTTGGATGTTCAGCCTGA+TGG + chr1_4:61436018-61436037 Msa0175480:three_prime_UTR 45.0%
!! ATGGTGCCGGTGATATGTAG+AGG + chr1_4:61433565-61433584 Msa0175480:intron 50.0%
! ACATCTGAGACTGCTGAAGC+AGG + chr1_4:61433778-61433797 Msa0175480:CDS 50.0%
ACTGCTGAAGCAGGTGTAGA+TGG + chr1_4:61433787-61433806 Msa0175480:CDS 50.0%
CCAAACTAACACAGCACTCC+TGG - chr1_4:61434531-61434550 None:intergenic 50.0%
!! CCAGGAGTGCTGTGTTAGTT+TGG + chr1_4:61434528-61434547 Msa0175480:intron 50.0%
GTCGGAAACTTAGTTCAGGC+AGG - chr1_4:61434800-61434819 None:intergenic 50.0%
CAGGAGGAAGCCAATTGTCA+TGG - chr1_4:61435055-61435074 None:intergenic 50.0%
!! TGGCTGATAAGAGGCATCGT+CGG + chr1_4:61435570-61435589 Msa0175480:CDS 50.0%
CAATTCTCTGCTGGCATTGC+TGG + chr1_4:61435650-61435669 Msa0175480:CDS 50.0%
TCACAGATAGCACGACAGCA+AGG - chr1_4:61435682-61435701 None:intergenic 50.0%
! TCTGCAAACTAGCTTGCGGA+AGG + chr1_4:61435702-61435721 Msa0175480:CDS 50.0%
! CTGCAAACTAGCTTGCGGAA+GGG + chr1_4:61435703-61435722 Msa0175480:CDS 50.0%
GACCTTAGACGCACAAAAGG+GGG - chr1_4:61435729-61435748 None:intergenic 50.0%
! GCGTCTAAGGTCTTCAACAC+AGG + chr1_4:61435737-61435756 Msa0175480:CDS 50.0%
TGCTAGTAGTGGCAGTGCTA+AGG + chr1_4:61435921-61435940 Msa0175480:CDS 50.0%
CTATCACTTCAGCAGCCATC+AGG - chr1_4:61436036-61436055 None:intergenic 50.0%
CAATGCGGGGGAAATGCTTC+TGG - chr1_4:61434979-61434998 None:intergenic 55.0%
!! CAGAAGCATTTCCCCCGCAT+TGG + chr1_4:61434977-61434996 Msa0175480:CDS 55.0%
CTTGAACAGATCCCTCTCCC+TGG - chr1_4:61435510-61435529 None:intergenic 55.0%
!! GGCTGATAAGAGGCATCGTC+GGG + chr1_4:61435571-61435590 Msa0175480:CDS 55.0%
TCTGCTGGCATTGCTGGTAC+TGG + chr1_4:61435656-61435675 Msa0175480:CDS 55.0%
AGCTGCAGCGTTGCTAGTAG+TGG + chr1_4:61435910-61435929 Msa0175480:CDS 55.0%
TGGCTGCTGAAGTGATAGCC+AGG + chr1_4:61436038-61436057 Msa0175480:three_prime_UTR 55.0%
GCTCACTGTTCGCGCGCTTA+TGG - chr1_4:61434428-61434447 None:intergenic 60.0%
AGCGCGCGAACAGTGAGCAA+CGG + chr1_4:61434430-61434449 Msa0175480:intron 60.0%
GTAAGGAGCTCGGGAAGCTC+CGG - chr1_4:61435629-61435648 None:intergenic 60.0%
! GGCCCCCTTTTGTGCGTCTA+AGG + chr1_4:61435724-61435743 Msa0175480:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 61432885 61436369 61432885 ID=Msa0175480;Name=Msa0175480
chr1_4 mRNA 61432885 61436369 61432885 ID=Msa0175480-mRNA-1;Parent=Msa0175480;Name=Msa0175480-mRNA-1;_AED=0.03;_eAED=0.03;_QI=145|1|1|1|1|1|5|417|412
chr1_4 exon 61432885 61433095 61432885 ID=Msa0175480-mRNA-1:exon:19608;Parent=Msa0175480-mRNA-1
chr1_4 exon 61433184 61433364 61433184 ID=Msa0175480-mRNA-1:exon:19609;Parent=Msa0175480-mRNA-1
chr1_4 exon 61433698 61434112 61433698 ID=Msa0175480-mRNA-1:exon:19610;Parent=Msa0175480-mRNA-1
chr1_4 exon 61434953 61435033 61434953 ID=Msa0175480-mRNA-1:exon:19611;Parent=Msa0175480-mRNA-1
chr1_4 exon 61435457 61436369 61435457 ID=Msa0175480-mRNA-1:exon:19612;Parent=Msa0175480-mRNA-1
chr1_4 five_prime_UTR 61432885 61433029 61432885 ID=Msa0175480-mRNA-1:five_prime_utr;Parent=Msa0175480-mRNA-1
chr1_4 CDS 61433030 61433095 61433030 ID=Msa0175480-mRNA-1:cds;Parent=Msa0175480-mRNA-1
chr1_4 CDS 61433184 61433364 61433184 ID=Msa0175480-mRNA-1:cds;Parent=Msa0175480-mRNA-1
chr1_4 CDS 61433698 61434112 61433698 ID=Msa0175480-mRNA-1:cds;Parent=Msa0175480-mRNA-1
chr1_4 CDS 61434953 61435033 61434953 ID=Msa0175480-mRNA-1:cds;Parent=Msa0175480-mRNA-1
chr1_4 CDS 61435457 61435952 61435457 ID=Msa0175480-mRNA-1:cds;Parent=Msa0175480-mRNA-1
chr1_4 three_prime_UTR 61435953 61436369 61435953 ID=Msa0175480-mRNA-1:three_prime_utr;Parent=Msa0175480-mRNA-1
Gene Sequence

>Msa0175480

ATGATGATTCAGAAACTTACTTTGATGGCTTCTCATGGATTTCCATCTCAAGAATATGCCATGAAGGGTTGTCAACAATTGGTGCCTTGTTATGCACCAAAACCAGATATTATTAGATATCAGAGTCCAAATCTTAGGTTAAATTCATCTGAAGAATCAAGAATGCCATCAAAAGAGTGGTTCAATTCAAATCAGTTTGTTGATTTTGATATTTCAGCTCTAAAGCCAACGGTTATTGATGTACAAGCTACTTGTCCAAGCACTGTACTTTTCAGCTTTGGCGTCATTGATCAATGCACCGAGCATGATAAAACTTTGCAGTGTATCACATCTGAGACTGCTGAAGCAGGTGTAGATGGTGTTCGTAAAGCTTTGTTGTCTGACTTGATGGGTTTGCAACTATCAGGGATTAATATGCCTCAAATATCATTGCATTCTCTCATCTACCCAAATAGGAATTTCTACATCTCGAAGCCTTTGCTTGATTTTTTTCAAGATTCAGCCCTTAGTTCAAAAATTACTGTTCATCTAAATGGTCAAGTCACGTTTATGGGTACTGAAATTGAGATGAAAGATTTTCTTGCTATTGTTGCTGAGTCATACGTATCAAAACGCACACATACAGGCGAAAAACAGTCTATGCTTGTTCCATACTTCACTAGGCTGAATATAAATGAAGTAGAGGCCAGAAGCATTTCCCCCGCATTGGATATTCACTCTACACTGACCGTTCCTTTAAAAAGTCCGAAGAAAGTCAAAGCCAATCCATCACGAAAAAAGAAAAAGAAAGTAGCCAGGGAGAGGGATCTGTTCAAGAAGAACTACATTCATGCATGTGAGAGCCTTCTGTTCTTGATGGCTGATAAGAGGCATCGTCGGGAAACAGCAGTTCTTTCACTGAAGAAATCAGGTCCGGAGCTTCCCGAGCTCCTTACACAATTCTCTGCTGGCATTGCTGGTACTGGCCTTGCTGTCGTGCTATCTGTGATCTGCAAACTAGCTTGCGGAAGGGCCCCCTTTTGTGCGTCTAAGGTCTTCAACACAGGGTTGGGTTTTGGGCTTATTTGGCTTTCTTGGGGAGTAAATAAGCTGAGGGATACAATTGTTAACATAAGCAAGAATGCTGGAAAGATGGGATTGAAAGATGAGGAAATGATTCAAAAAGTGGATAAGAGTCTAAAAGAAGTTTACTTTAGAGCTGCAGCGTTGCTAGTAGTGGCAGTGCTAAGGCTTGCTTGA

Protein sequence

>Msa0175480

MMIQKLTLMASHGFPSQEYAMKGCQQLVPCYAPKPDIIRYQSPNLRLNSSEESRMPSKEWFNSNQFVDFDISALKPTVIDVQATCPSTVLFSFGVIDQCTEHDKTLQCITSETAEAGVDGVRKALLSDLMGLQLSGINMPQISLHSLIYPNRNFYISKPLLDFFQDSALSSKITVHLNGQVTFMGTEIEMKDFLAIVAESYVSKRTHTGEKQSMLVPYFTRLNINEVEARSISPALDIHSTLTVPLKSPKKVKANPSRKKKKKVARERDLFKKNYIHACESLLFLMADKRHRRETAVLSLKKSGPELPELLTQFSAGIAGTGLAVVLSVICKLACGRAPFCASKVFNTGLGFGLIWLSWGVNKLRDTIVNISKNAGKMGLKDEEMIQKVDKSLKEVYFRAAALLVVAVLRLA*