AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1002750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002750 MtrunA17_Chr7g0265221 85.484 186 10 3 1 169 1 186 5.48e-111 324
Msa1002750 MtrunA17_Chr7g0265221 80.392 102 20 0 148 249 282 383 3.41e-48 163
Msa1002750 MtrunA17_Chr1g0179801 63.187 182 51 3 1 166 1 182 9.21e-78 239
Msa1002750 MtrunA17_Chr1g0179801 74.074 81 21 0 167 247 294 374 5.10e-34 125
Msa1002750 MtrunA17_Chr7g0250511 36.585 164 91 6 26 184 25 180 2.58e-29 112
Msa1002750 MtrunA17_Chr7g0250511 39.759 83 50 0 164 246 269 351 9.44e-15 72.8
Msa1002750 MtrunA17_Chr3g0128001 36.667 150 83 3 22 167 11 152 1.67e-25 102
Msa1002750 MtrunA17_Chr8g0345831 35.417 144 85 2 26 165 18 157 2.43e-25 102
Msa1002750 MtrunA17_Chr1g0170641 31.953 169 99 4 8 167 3 164 1.52e-24 95.9
Msa1002750 MtrunA17_Chr5g0426891 37.879 132 79 1 39 167 24 155 1.29e-23 97.4
Msa1002750 MtrunA17_Chr5g0426891 35.106 94 58 3 151 242 246 338 2.77e-11 62.8
Msa1002750 MtrunA17_Chr3g0126741 31.250 160 105 3 39 193 43 202 1.90e-19 86.3
Msa1002750 MtrunA17_Chr4g0050031 35.345 116 71 2 54 165 62 177 3.50e-19 85.5
Msa1002750 MtrunA17_Chr7g0232161 31.288 163 92 7 26 180 36 186 3.84e-19 84.7
Msa1002750 MtrunA17_Chr7g0239111 32.515 163 90 7 26 180 31 181 8.46e-19 84.3
Msa1002750 MtrunA17_Chr7g0242551 30.323 155 99 3 26 172 26 179 3.00e-18 82.8
Msa1002750 MtrunA17_Chr7g0239121 32.515 163 90 7 26 180 27 177 3.18e-18 82.8
Msa1002750 MtrunA17_Chr4g0006371 29.518 166 95 5 26 172 25 187 3.43e-18 82.8
Msa1002750 MtrunA17_Chr7g0239101 30.675 163 93 7 26 180 31 181 9.13e-18 81.3
Msa1002750 MtrunA17_Chr2g0296371 29.480 173 107 4 3 167 5 170 4.74e-17 79.3
Msa1002750 MtrunA17_Chr1g0184101 27.517 149 99 4 24 167 12 156 1.45e-16 77.8
Msa1002750 MtrunA17_Chr3g0113641 31.646 158 89 5 26 172 26 175 1.50e-16 77.8
Msa1002750 MtrunA17_Chr1g0184151 28.947 152 96 5 26 170 15 161 4.14e-16 76.6
Msa1002750 MtrunA17_Chr8g0375661 30.534 131 80 4 26 152 29 152 9.13e-16 72.8
Msa1002750 MtrunA17_Chr3g0093751 34.646 127 73 3 26 149 29 148 1.08e-15 75.5
Msa1002750 MtrunA17_Chr8g0375641 30.000 130 82 3 26 152 29 152 1.46e-15 72.4
Msa1002750 MtrunA17_Chr3g0093741 33.858 127 74 3 26 149 29 148 2.01e-15 74.7
Msa1002750 MtrunA17_Chr8g0375601 30.233 129 85 3 26 152 22 147 3.96e-15 73.9
Msa1002750 MtrunA17_Chr3g0093761 35.433 127 71 4 26 149 29 147 5.90e-15 73.2
Msa1002750 MtrunA17_Chr8g0375671 30.769 130 81 4 26 152 29 152 9.13e-15 72.8
Msa1002750 MtrunA17_Chr5g0398291 28.571 161 106 3 26 177 19 179 9.33e-15 72.8
Msa1002750 MtrunA17_Chr1g0184161 26.174 149 100 3 24 167 13 156 2.07e-14 71.6
Msa1002750 MtrunA17_Chr1g0158021 31.746 126 77 3 46 167 41 161 2.58e-14 70.5
Msa1002750 MtrunA17_Chr8g0354241 27.922 154 103 2 5 154 23 172 3.13e-14 71.2
Msa1002750 MtrunA17_Chr5g0421091 32.812 128 79 4 26 153 22 142 3.17e-14 71.2
Msa1002750 MtrunA17_Chr7g0265351 38.542 96 56 1 54 149 39 131 3.59e-14 70.9
Msa1002750 MtrunA17_Chr3g0114871 26.966 178 114 5 10 181 2 169 4.00e-14 70.1
Msa1002750 MtrunA17_Chr5g0420891 32.308 130 77 5 26 153 23 143 6.17e-14 67.8
Msa1002750 MtrunA17_Chr8g0354261 28.571 154 102 2 5 154 23 172 6.27e-14 70.5
Msa1002750 MtrunA17_Chr5g0437181 28.188 149 94 4 26 166 25 168 7.26e-14 70.1
Msa1002750 MtrunA17_Chr7g0239821 34.074 135 75 6 53 180 63 190 7.42e-14 70.1
Msa1002750 MtrunA17_Chr1g0184111 25.683 183 118 5 24 201 12 181 8.78e-14 70.1
Msa1002750 MtrunA17_Chr8g0364161 32.381 105 69 2 52 154 65 169 1.24e-13 67.4
Msa1002750 MtrunA17_Chr1g0184121 25.137 183 119 5 24 201 12 181 1.30e-13 69.3
Msa1002750 MtrunA17_Chr2g0311641 29.197 137 86 3 26 157 33 163 1.48e-13 66.6
Msa1002750 MtrunA17_Chr5g0424201 32.450 151 87 5 31 173 23 166 1.53e-13 69.3
Msa1002750 MtrunA17_Chr3g0125201 30.303 132 86 3 52 183 1 126 1.58e-13 68.9
Msa1002750 MtrunA17_Chr5g0424211 31.126 151 91 5 31 173 21 166 1.65e-13 68.9
Msa1002750 MtrunA17_Chr4g0011311 27.607 163 111 5 24 182 39 198 2.36e-13 68.6
Msa1002750 MtrunA17_Chr5g0420941 28.125 128 85 4 26 153 22 142 4.90e-13 67.8
Msa1002750 MtrunA17_Chr5g0423211 26.950 141 92 5 15 153 13 144 4.97e-13 67.8
Msa1002750 MtrunA17_Chr1g0170631 38.272 81 49 1 167 246 112 192 5.74e-13 65.9
Msa1002750 MtrunA17_Chr5g0420901 31.159 138 84 5 18 153 15 143 7.00e-13 67.4
Msa1002750 MtrunA17_Chr7g0220011 29.333 150 93 4 23 167 13 154 7.36e-13 67.0
Msa1002750 MtrunA17_Chr2g0311741 35.593 118 67 3 41 154 17 129 1.05e-12 66.6
Msa1002750 MtrunA17_Chr1g0187831 29.104 134 92 2 26 157 43 175 1.14e-12 67.0
Msa1002750 MtrunA17_Chr5g0420981 31.000 100 68 1 53 152 52 150 1.33e-12 66.6
Msa1002750 MtrunA17_Chr6g0455481 26.829 164 103 4 23 180 16 168 1.52e-12 66.2
Msa1002750 MtrunA17_Chr7g0220001 26.875 160 101 5 23 177 15 163 1.74e-12 66.2
Msa1002750 MtrunA17_Chr2g0311631 25.843 178 120 4 26 197 33 204 1.92e-12 66.2
Msa1002750 MtrunA17_Chr3g0087031 30.894 123 76 4 51 167 57 176 2.06e-12 65.9
Msa1002750 MtrunA17_Chr1g0161111 30.392 102 70 1 53 154 131 231 3.66e-12 65.5
Msa1002750 MtrunA17_Chr2g0311681 32.203 118 76 2 41 154 48 165 3.96e-12 65.1
Msa1002750 MtrunA17_Chr1g0161081 29.412 102 71 1 53 154 72 172 5.82e-12 64.7
Msa1002750 MtrunA17_Chr2g0314381 30.534 131 78 4 26 152 54 175 9.08e-12 64.3
Msa1002750 MtrunA17_Chr8g0375701 28.372 215 125 10 20 215 25 229 9.98e-12 63.9
Msa1002750 MtrunA17_Chr2g0311711 31.356 118 77 2 41 154 52 169 1.06e-11 63.9
Msa1002750 MtrunA17_Chr1g0187821 32.479 117 77 1 43 157 56 172 1.08e-11 63.9
Msa1002750 MtrunA17_Chr5g0421011 31.068 103 65 3 53 153 46 144 1.41e-11 63.5
Msa1002750 MtrunA17_Chr8g0336851 32.540 126 75 5 54 172 60 182 1.53e-11 63.5
Msa1002750 MtrunA17_Chr2g0311691 32.381 105 69 1 52 154 61 165 1.67e-11 63.5
Msa1002750 MtrunA17_Chr7g0247991 27.826 115 81 2 42 154 55 169 1.96e-11 63.2
Msa1002750 MtrunA17_Chr8g0370711 29.365 126 82 3 48 167 46 170 2.07e-11 63.2
Msa1002750 MtrunA17_Chr8g0365241 30.000 100 69 1 53 152 56 154 3.28e-11 62.4
Msa1002750 MtrunA17_Chr8g0336761 30.159 126 78 5 54 172 60 182 4.20e-11 62.0
Msa1002750 MtrunA17_Chr4g0066121 33.333 129 78 5 43 166 48 173 4.60e-11 62.0
Msa1002750 MtrunA17_Chr1g0161041 26.471 102 74 1 53 154 95 195 6.27e-11 61.6
Msa1002750 MtrunA17_Chr2g0311921 29.323 133 87 3 54 181 54 184 6.79e-11 61.6
Msa1002750 MtrunA17_Chr4g0055921 39.683 63 35 1 52 114 7 66 6.89e-11 57.8
Msa1002750 MtrunA17_Chr7g0266651 23.288 146 105 3 9 152 18 158 7.38e-11 61.6
Msa1002750 MtrunA17_Chr7g0235951 27.922 154 103 4 6 157 25 172 8.37e-11 61.2
Msa1002750 MtrunA17_Chr5g0412651 31.579 95 61 2 54 144 38 132 8.46e-11 61.2
Msa1002750 MtrunA17_Chr3g0114861 26.667 150 95 5 24 167 15 155 8.62e-11 61.2
Msa1002750 MtrunA17_Chr8g0336831 27.097 155 106 4 54 202 60 213 8.89e-11 60.5
Msa1002750 MtrunA17_Chr8g0348081 25.974 154 106 3 54 201 60 211 8.98e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002750 AT2G36690.2 50.877 171 76 4 1 164 6 175 3.03e-55 181
Msa1002750 AT2G36690.2 65.060 83 29 0 167 249 284 366 3.06e-31 119
Msa1002750 AT2G36690.1 50.877 171 76 4 1 164 6 175 3.03e-55 181
Msa1002750 AT2G36690.1 65.060 83 29 0 167 249 284 366 3.06e-31 119
Msa1002750 AT4G10500.1 40.690 145 78 2 26 166 20 160 1.24e-30 116
Msa1002750 AT2G44800.1 31.694 183 117 3 5 182 6 185 1.03e-29 114
Msa1002750 AT2G44800.1 42.683 82 47 0 164 245 272 353 1.66e-14 72.4
Msa1002750 AT3G60290.1 35.185 162 97 3 26 182 27 185 1.77e-29 114
Msa1002750 AT3G60290.1 41.176 85 50 0 161 245 269 353 3.87e-14 71.2
Msa1002750 AT4G10490.1 37.241 145 83 2 26 166 18 158 1.50e-28 111
Msa1002750 AT5G07480.1 36.986 146 78 4 26 165 24 161 1.16e-22 95.5
Msa1002750 AT5G07480.1 39.726 73 44 0 167 239 274 346 4.29e-12 65.5
Msa1002750 AT5G24530.1 32.215 149 89 2 23 167 12 152 5.05e-22 93.6
Msa1002750 AT2G38240.1 32.468 154 89 6 26 172 23 168 1.23e-19 87.0
Msa1002750 AT2G06960.1 61.404 57 22 0 180 236 92 148 2.82e-16 73.9
Msa1002750 AT3G13610.1 30.159 126 80 3 24 148 36 154 4.13e-16 77.0
Msa1002750 AT3G11180.2 28.289 152 102 3 26 172 67 216 1.40e-15 75.9
Msa1002750 AT3G11180.1 28.289 152 102 3 26 172 67 216 1.47e-15 75.9
Msa1002750 AT1G55290.1 31.250 128 77 4 24 148 35 154 5.06e-14 71.2
Msa1002750 AT5G05600.2 30.952 168 99 6 26 181 38 200 6.77e-14 70.1
Msa1002750 AT5G05600.1 30.952 168 99 6 26 181 38 200 1.07e-13 70.1
Msa1002750 AT1G17010.1 30.000 170 106 6 26 187 29 193 2.90e-13 68.9
Msa1002750 AT3G55970.2 29.801 151 96 6 25 167 24 172 8.75e-13 67.0
Msa1002750 AT3G55970.1 29.801 151 96 6 25 167 24 172 9.85e-13 67.4
Msa1002750 AT5G07480.2 39.726 73 44 0 167 239 165 237 2.07e-12 65.5
Msa1002750 AT3G19010.3 26.316 152 84 4 36 165 10 155 3.20e-12 65.5
Msa1002750 AT3G19010.1 26.316 152 84 4 36 165 10 155 4.77e-12 65.5
Msa1002750 AT3G19010.4 26.316 152 84 4 36 165 10 155 4.77e-12 65.5
Msa1002750 AT4G25420.2 29.268 123 77 4 26 146 40 154 6.68e-12 64.7
Msa1002750 AT3G12900.1 28.986 138 86 4 26 157 33 164 7.03e-12 64.7
Msa1002750 AT4G25420.1 29.268 123 77 4 26 146 40 154 9.29e-12 64.7
Msa1002750 AT3G19010.2 26.316 152 84 4 36 165 10 155 1.01e-11 63.9
Msa1002750 AT3G21420.1 33.607 122 70 4 53 165 54 173 1.06e-11 64.3
Msa1002750 AT5G12270.1 32.258 124 75 3 26 148 33 148 4.62e-11 62.4

Find 50 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATTTCACTGATCTTAT+TGG 0.180414 6_4:-88565355 Msa1002750:CDS
TCAAGAGCTTGTAGCCTATT+TGG 0.181404 6_4:+88565331 None:intergenic
AAGATCAGTGAAATCAATTA+TGG 0.215332 6_4:+88565360 None:intergenic
TTTGTAATCCTTTGCCTGAT+TGG 0.263926 6_4:-88564185 Msa1002750:CDS
GCTGGAAACATATACTTCTT+TGG 0.286117 6_4:+88565445 None:intergenic
CACAAGAGAAACCAAGAAAA+AGG 0.313151 6_4:-88562307 Msa1002750:CDS
CTGATCTTATTGGTCCAAAT+AGG 0.329604 6_4:-88565345 Msa1002750:CDS
TCATCATTCATTGCCATTGC+AGG 0.340430 6_4:+88565553 None:intergenic
GCCAATGCTTGTGAACAATA+TGG 0.342407 6_4:-88565301 Msa1002750:CDS
GAAGTATATGTTTCCAGCTT+CGG 0.353233 6_4:-88565440 Msa1002750:CDS
AATGGGGAGGCAGGCCAATC+AGG 0.371866 6_4:+88564171 None:intergenic
TTGTCTTCATCAATGAGTTT+TGG 0.388202 6_4:+88562381 None:intergenic
ATGAGAGCAGCTGTGAGATA+TGG 0.390983 6_4:-88564267 Msa1002750:CDS
GGAAAGACCCACAAAGAGTA+TGG 0.391049 6_4:-88565419 Msa1002750:CDS
TGAATCATCCATACTCTTTG+TGG 0.395543 6_4:+88565411 None:intergenic
TGATTGGCCTGCCTCCCCAT+TGG 0.400016 6_4:-88564169 Msa1002750:CDS
TTTGTGGGTCTTTCCGAAGC+TGG 0.412657 6_4:+88565427 None:intergenic
GAGTGTATTACATAGGGTTC+TGG 0.416452 6_4:-88562478 Msa1002750:CDS
TCTGTGTCCATGTAACGCTT+TGG 0.429309 6_4:+88562357 None:intergenic
GAATCATCCATACTCTTTGT+GGG 0.437196 6_4:+88565412 None:intergenic
TCCATATTGTTCACAAGCAT+TGG 0.440200 6_4:+88565300 None:intergenic
ATTAGATATTGAAGTGATCA+AGG 0.453016 6_4:-88562206 Msa1002750:three_prime_UTR
TGAGAGCAGCTGTGAGATAT+GGG 0.459658 6_4:-88564266 Msa1002750:CDS
CAAAAGACTCAGTGTTCTGT+TGG 0.465360 6_4:-88564227 Msa1002750:CDS
AGATCAGTGAAATCAATTAT+GGG 0.469482 6_4:+88565361 None:intergenic
TGAAAGTCCAATGGGGAGGC+AGG 0.469731 6_4:+88564162 None:intergenic
ACACTTACTGAAAGTCCAAT+GGG 0.477635 6_4:+88564154 None:intergenic
ATAGAAAATGAATATCATAA+AGG 0.491733 6_4:-88565508 Msa1002750:CDS
AGGAGCATCATAGATGTTGT+AGG 0.494826 6_4:-88564342 Msa1002750:CDS
AAGATTCTTCGATCTTCCAT+TGG 0.494960 6_4:-88564319 Msa1002750:CDS
ATTCTTCGATCTTCCATTGG+AGG 0.496137 6_4:-88564316 Msa1002750:CDS
AATACAAGAGTGTATTACAT+AGG 0.514652 6_4:-88562485 Msa1002750:CDS
GGATGATTCAAATGTTGCTA+AGG 0.521576 6_4:-88565398 Msa1002750:CDS
GGTCTCACAGTGCAGTCAAA+AGG 0.526151 6_4:+88562408 None:intergenic
AAGACTCAGTGTTCTGTTGG+AGG 0.531960 6_4:-88564224 Msa1002750:CDS
AGACAATCCAAAGCGTTACA+TGG 0.547718 6_4:-88562364 Msa1002750:CDS
TACTTAGCTCTCTCCTCCAA+TGG 0.547880 6_4:+88564303 None:intergenic
AGACTCAGTGTTCTGTTGGA+GGG 0.559012 6_4:-88564223 Msa1002750:CDS
ATACAAGAGTGTATTACATA+GGG 0.568540 6_4:-88562484 Msa1002750:CDS
AACACTTACTGAAAGTCCAA+TGG 0.582866 6_4:+88564153 None:intergenic
GTTACGCATGTCTCCTGCAA+TGG 0.583325 6_4:-88565566 Msa1002750:exon
TTAGATATTGAAGTGATCAA+GGG 0.583845 6_4:-88562205 Msa1002750:three_prime_UTR
AGCTAAGAGCAGAGTATCAG+TGG 0.587185 6_4:-88562448 Msa1002750:CDS
GAGGCAGGCCAATCAGGCAA+AGG 0.590329 6_4:+88564177 None:intergenic
AATGAATGATGAAAAGAATG+AGG 0.605075 6_4:-88565542 Msa1002750:CDS
TCACAGTGCAGTCAAAAGGA+AGG 0.626843 6_4:+88562412 None:intergenic
ATTTATCAGATATTTAGCAA+CGG 0.627515 6_4:-88562510 Msa1002750:intron
TTACTGAAAGTCCAATGGGG+AGG 0.691760 6_4:+88564158 None:intergenic
ACATATCAGATAATATAACA+AGG 0.711804 6_4:-88564362 Msa1002750:CDS
CACTTACTGAAAGTCCAATG+GGG 0.774600 6_4:+88564155 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATAATAATATGAATTA+AGG + chr6_4:88563663-88563682 None:intergenic 10.0%
!!! ATATTATTATTTCATTGATT+TGG - chr6_4:88563669-88563688 Msa1002750:intron 10.0%
!! CAAAATATATTAAAATAGTA+AGG - chr6_4:88563804-88563823 Msa1002750:intron 10.0%
!! TAATAATATTATGAAAGAAT+TGG - chr6_4:88564560-88564579 Msa1002750:intron 10.0%
!!! TTAATGTTAGTTTATTAATT+TGG + chr6_4:88564849-88564868 None:intergenic 10.0%
!! ATAGAAAATGAATATCATAA+AGG - chr6_4:88562263-88562282 Msa1002750:exon 15.0%
!! TCAAAATCTACATTTAAATT+TGG + chr6_4:88562728-88562747 None:intergenic 15.0%
!!! AATGTAGATTTTGATTTTAA+AGG - chr6_4:88562734-88562753 Msa1002750:intron 15.0%
!! TATTGTTAGACAAATAAATT+AGG + chr6_4:88562941-88562960 None:intergenic 15.0%
!!! CTTTTGTTAATTAATCAAAT+TGG - chr6_4:88563763-88563782 Msa1002750:intron 15.0%
!! TTGTAAATCATTATTCAAAA+TGG - chr6_4:88563913-88563932 Msa1002750:intron 15.0%
!!! TAAATTAATCTTTGAAATTG+TGG + chr6_4:88564326-88564345 None:intergenic 15.0%
!!! AATTGTAAACATTTTTTGAA+CGG + chr6_4:88564938-88564957 None:intergenic 15.0%
!!! CAAAAAATGTTTACAATTTT+TGG - chr6_4:88564940-88564959 Msa1002750:intron 15.0%
!! TTTAAGAAAAAAAATCTTTG+AGG - chr6_4:88565026-88565045 Msa1002750:intron 15.0%
!! TTCCTAGAAAAATTTCAATT+TGG - chr6_4:88562846-88562865 Msa1002750:intron 20.0%
!!! GCTATATTCGATTTTTATAT+TGG - chr6_4:88563029-88563048 Msa1002750:intron 20.0%
!! TATTGGTCATAATTCATTTA+AGG - chr6_4:88563046-88563065 Msa1002750:intron 20.0%
!!! CTAACTTGTTTTTATAAAGA+AGG + chr6_4:88563076-88563095 None:intergenic 20.0%
!! GTCTCACATATATTAAAATA+AGG + chr6_4:88563100-88563119 None:intergenic 20.0%
!!! AACTTTGTTTTTAATATACG+TGG - chr6_4:88563299-88563318 Msa1002750:intron 20.0%
!!! ACTTTGTTTTTAATATACGT+GGG - chr6_4:88563300-88563319 Msa1002750:intron 20.0%
!! ACATATCAGATAATATAACA+AGG - chr6_4:88563409-88563428 Msa1002750:intron 20.0%
!! TAATTAATCAAATTGGTTAC+AGG - chr6_4:88563770-88563789 Msa1002750:intron 20.0%
!! TAGTTCAATACTATGTAAAT+TGG - chr6_4:88563873-88563892 Msa1002750:intron 20.0%
!! TTATTAATTTCTAACGTTAG+AGG - chr6_4:88563941-88563960 Msa1002750:intron 20.0%
!!! TATTATTTTAAACAGAGAAG+TGG - chr6_4:88564416-88564435 Msa1002750:intron 20.0%
!! CATTAATAAACTAACTCATA+CGG - chr6_4:88564863-88564882 Msa1002750:intron 20.0%
!! ATTAATAAACTAACTCATAC+GGG - chr6_4:88564864-88564883 Msa1002750:intron 20.0%
!! ATTTATCAGATATTTAGCAA+CGG - chr6_4:88565261-88565280 Msa1002750:intron 20.0%
!!! TTATGTGTATGTAAATTTTC+TGG + chr6_4:88565502-88565521 None:intergenic 20.0%
! AATGAATGATGAAAAGAATG+AGG - chr6_4:88562229-88562248 Msa1002750:three_prime_UTR 25.0%
! AGATCAGTGAAATCAATTAT+GGG + chr6_4:88562413-88562432 None:intergenic 25.0%
! AAGATCAGTGAAATCAATTA+TGG + chr6_4:88562414-88562433 None:intergenic 25.0%
!! ATTGATTTCACTGATCTTAT+TGG - chr6_4:88562416-88562435 Msa1002750:CDS 25.0%
!! CTCCAAATTGAAATTTTTCT+AGG + chr6_4:88562851-88562870 None:intergenic 25.0%
!! TTTTTAATATACGTGGGATT+TGG - chr6_4:88563306-88563325 Msa1002750:intron 25.0%
! AATCAAAGCAAATTCATCAA+TGG - chr6_4:88563708-88563727 Msa1002750:intron 25.0%
! ATCAAAGCAAATTCATCAAT+GGG - chr6_4:88563709-88563728 Msa1002750:intron 25.0%
!! TATCAATGTGTGGAATTTTA+AGG + chr6_4:88563849-88563868 None:intergenic 25.0%
!!! GAACTATTTTTATCAATGTG+TGG + chr6_4:88563859-88563878 None:intergenic 25.0%
!! ACAAATTAGTTCTTGTATGA+TGG - chr6_4:88564111-88564130 Msa1002750:intron 25.0%
!! GACATCAATTAACAGTTTTT+GGG + chr6_4:88564304-88564323 None:intergenic 25.0%
! TATTGTCAAGAACAAATGTT+TGG + chr6_4:88564463-88564482 None:intergenic 25.0%
! ACATTTGTTCTTGACAATAA+TGG - chr6_4:88564464-88564483 Msa1002750:intron 25.0%
!!! ATTGTTGTTGTCATTTTCTT+TGG + chr6_4:88564541-88564560 None:intergenic 25.0%
! ATTATGAAAGAATTGGACAA+TGG - chr6_4:88564567-88564586 Msa1002750:intron 25.0%
! TTATGAAAGAATTGGACAAT+GGG - chr6_4:88564568-88564587 Msa1002750:intron 25.0%
! AAATCCAATATCAAGACAAA+TGG - chr6_4:88564714-88564733 Msa1002750:intron 25.0%
!! AATCTTATTTGAGGTAATGT+GGG + chr6_4:88564966-88564985 None:intergenic 25.0%
!! TAATCTTATTTGAGGTAATG+TGG + chr6_4:88564967-88564986 None:intergenic 25.0%
!! TGAAAAGGTAATCTTATTTG+AGG + chr6_4:88564975-88564994 None:intergenic 25.0%
!! CAAATAAGATTACCTTTTCA+TGG - chr6_4:88564975-88564994 Msa1002750:intron 25.0%
! AATAGAATTCTTCCATGAAA+AGG + chr6_4:88564990-88565009 None:intergenic 25.0%
! TATGAATTGAATCATTTGAG+TGG - chr6_4:88565153-88565172 Msa1002750:intron 25.0%
!!! TGTACTGACTTTTTTTATGT+TGG - chr6_4:88565233-88565252 Msa1002750:intron 25.0%
!! AATACAAGAGTGTATTACAT+AGG - chr6_4:88565286-88565305 Msa1002750:intron 25.0%
!! ATACAAGAGTGTATTACATA+GGG - chr6_4:88565287-88565306 Msa1002750:intron 25.0%
! ATTAGATATTGAAGTGATCA+AGG - chr6_4:88565565-88565584 Msa1002750:exon 25.0%
TGAGAAAGGTTATCTTCATA+AGG - chr6_4:88562301-88562320 Msa1002750:CDS 30.0%
! TGAACAATATGGATTTTTCC+AGG - chr6_4:88562481-88562500 Msa1002750:CDS 30.0%
TGTTTAAACTGTAATGTCTG+AGG - chr6_4:88562535-88562554 Msa1002750:intron 30.0%
ATCAAATACTATATCCCTTG+TGG - chr6_4:88562618-88562637 Msa1002750:intron 30.0%
ACACACACATTCAATTACAT+CGG - chr6_4:88562676-88562695 Msa1002750:intron 30.0%
TGTCTTTATGTCGTATAATG+TGG - chr6_4:88562813-88562832 Msa1002750:intron 30.0%
GTCTTTATGTCGTATAATGT+GGG - chr6_4:88562814-88562833 Msa1002750:intron 30.0%
AATATAGCTCAACATGCATT+AGG + chr6_4:88563017-88563036 None:intergenic 30.0%
GAGAATGAATGTTATTGTGT+TGG - chr6_4:88563363-88563382 Msa1002750:intron 30.0%
!! CTTGTTTTTCCATGAAACTT+AGG - chr6_4:88564033-88564052 Msa1002750:intron 30.0%
CATGTTCAAGACAAATTTGT+AGG - chr6_4:88564057-88564076 Msa1002750:intron 30.0%
! TAGGTAAATACACTTGCTAA+TGG - chr6_4:88564076-88564095 Msa1002750:intron 30.0%
ACTTGCCTAAAAAAAGACTA+TGG + chr6_4:88564192-88564211 None:intergenic 30.0%
! GGACATCAATTAACAGTTTT+TGG + chr6_4:88564305-88564324 None:intergenic 30.0%
!! TATTTTAAACAGAGAAGTGG+TGG - chr6_4:88564419-88564438 Msa1002750:intron 30.0%
TAAAATTGGTTACCAACATC+TGG + chr6_4:88564596-88564615 None:intergenic 30.0%
TAAGCCATTTGTCTTGATAT+TGG + chr6_4:88564721-88564740 None:intergenic 30.0%
!! ATATTGACAACGAAAGCATT+GGG + chr6_4:88564758-88564777 None:intergenic 30.0%
! AATATTGACAACGAAAGCAT+TGG + chr6_4:88564759-88564778 None:intergenic 30.0%
AATGCTTTCGTTGTCAATAT+TGG - chr6_4:88564758-88564777 Msa1002750:intron 30.0%
! CAATATTGGTGATCATTTAG+AGG - chr6_4:88564772-88564791 Msa1002750:intron 30.0%
TGTTACGTGCAAATGATATT+TGG - chr6_4:88565060-88565079 Msa1002750:intron 30.0%
!!! ACTGACTTTTTTTATGTTGG+TGG - chr6_4:88565236-88565255 Msa1002750:intron 30.0%
! TTGTCTTCATCAATGAGTTT+TGG + chr6_4:88565393-88565412 None:intergenic 30.0%
! ATGTAAATTTTCTGGACTCT+AGG + chr6_4:88565494-88565513 None:intergenic 30.0%
! GTGAAGCATTTGTATGAGAA+AGG - chr6_4:88562287-88562306 Msa1002750:CDS 35.0%
GCTGGAAACATATACTTCTT+TGG + chr6_4:88562329-88562348 None:intergenic 35.0%
GAAGTATATGTTTCCAGCTT+CGG - chr6_4:88562331-88562350 Msa1002750:CDS 35.0%
GAATCATCCATACTCTTTGT+GGG + chr6_4:88562362-88562381 None:intergenic 35.0%
TGAATCATCCATACTCTTTG+TGG + chr6_4:88562363-88562382 None:intergenic 35.0%
GGATGATTCAAATGTTGCTA+AGG - chr6_4:88562373-88562392 Msa1002750:CDS 35.0%
CTGATCTTATTGGTCCAAAT+AGG - chr6_4:88562426-88562445 Msa1002750:CDS 35.0%
TCCATATTGTTCACAAGCAT+TGG + chr6_4:88562474-88562493 None:intergenic 35.0%
! CAATATGGATTTTTCCAGGT+AGG - chr6_4:88562485-88562504 Msa1002750:CDS 35.0%
! GATTTTTCCAGGTAGGAAAT+TGG - chr6_4:88562492-88562511 Msa1002750:CDS 35.0%
TTGTTTACCAATTTCCTACC+TGG + chr6_4:88562502-88562521 None:intergenic 35.0%
TACTATATCCCTTGTGGATT+TGG - chr6_4:88562624-88562643 Msa1002750:intron 35.0%
AAGATTCTTCGATCTTCCAT+TGG - chr6_4:88563452-88563471 Msa1002750:intron 35.0%
!! GTCTTTTGTTTGACTGAAAC+TGG + chr6_4:88563532-88563551 None:intergenic 35.0%
TTTGTAATCCTTTGCCTGAT+TGG - chr6_4:88563586-88563605 Msa1002750:intron 35.0%
ACACTTACTGAAAGTCCAAT+GGG + chr6_4:88563620-88563639 None:intergenic 35.0%
AACACTTACTGAAAGTCCAA+TGG + chr6_4:88563621-88563640 None:intergenic 35.0%
TGAACATGACCTAAGTTTCA+TGG + chr6_4:88564045-88564064 None:intergenic 35.0%
! TTAGTTCTTGTATGATGGTG+TGG - chr6_4:88564116-88564135 Msa1002750:intron 35.0%
TGCCTAAAAAAAGACTATGG+CGG + chr6_4:88564189-88564208 None:intergenic 35.0%
AAGCCATCCTAGAAAGTTTA+GGG - chr6_4:88564487-88564506 Msa1002750:intron 35.0%
! AATCCCTAAACTTTCTAGGA+TGG + chr6_4:88564493-88564512 None:intergenic 35.0%
CCATAATCCCTAAACTTTCT+AGG + chr6_4:88564497-88564516 None:intergenic 35.0%
CCTAGAAAGTTTAGGGATTA+TGG - chr6_4:88564494-88564513 Msa1002750:intron 35.0%
!! TCATCAATGAGTTTTGGTGA+CGG + chr6_4:88565387-88565406 None:intergenic 35.0%
! CTTTTTCTTGGTTTCTCTTG+TGG + chr6_4:88565466-88565485 None:intergenic 35.0%
CACAAGAGAAACCAAGAAAA+AGG - chr6_4:88565464-88565483 Msa1002750:intron 35.0%
!! CTCTAGGAAATCCTTTTTCT+TGG + chr6_4:88565478-88565497 None:intergenic 35.0%
TCATCATTCATTGCCATTGC+AGG + chr6_4:88562221-88562240 None:intergenic 40.0%
TCAAGAGCTTGTAGCCTATT+TGG + chr6_4:88562443-88562462 None:intergenic 40.0%
GCCAATGCTTGTGAACAATA+TGG - chr6_4:88562470-88562489 Msa1002750:CDS 40.0%
CACACAATCCAAATCCACAA+GGG + chr6_4:88562635-88562654 None:intergenic 40.0%
ACACACAATCCAAATCCACA+AGG + chr6_4:88562636-88562655 None:intergenic 40.0%
ATCAATGTAGCGACTGATTG+AGG - chr6_4:88562759-88562778 Msa1002750:intron 40.0%
!! AGGAGCATCATAGATGTTGT+AGG - chr6_4:88563429-88563448 Msa1002750:intron 40.0%
ATTCTTCGATCTTCCATTGG+AGG - chr6_4:88563455-88563474 Msa1002750:intron 40.0%
CAAAAGACTCAGTGTTCTGT+TGG - chr6_4:88563544-88563563 Msa1002750:intron 40.0%
CACTTACTGAAAGTCCAATG+GGG + chr6_4:88563619-88563638 None:intergenic 40.0%
AATTCATCAATGGGTCCCAT+TGG - chr6_4:88563718-88563737 Msa1002750:intron 40.0%
ATTCATCAATGGGTCCCATT+GGG - chr6_4:88563719-88563738 Msa1002750:intron 40.0%
ACTATAAGACAGACCCCAAT+GGG + chr6_4:88563736-88563755 None:intergenic 40.0%
TACTATAAGACAGACCCCAA+TGG + chr6_4:88563737-88563756 None:intergenic 40.0%
AACGTATAGTGTCACATGTC+TGG + chr6_4:88563983-88564002 None:intergenic 40.0%
! TTTGGTTTCTTCTGCATAGC+TGG + chr6_4:88564445-88564464 None:intergenic 40.0%
GAAGCCATCCTAGAAAGTTT+AGG - chr6_4:88564486-88564505 Msa1002750:intron 40.0%
!! ACAACGAAAGCATTGGGAAT+AGG + chr6_4:88564752-88564771 None:intergenic 40.0%
ACTCATACGGGTTTAGTAGA+AGG - chr6_4:88564876-88564895 Msa1002750:intron 40.0%
GAGTGTATTACATAGGGTTC+TGG - chr6_4:88565293-88565312 Msa1002750:CDS 40.0%
! AGACAATCCAAAGCGTTACA+TGG - chr6_4:88565407-88565426 Msa1002750:CDS 40.0%
GGAAAGACCCACAAAGAGTA+TGG - chr6_4:88562352-88562371 Msa1002750:CDS 45.0%
CAATAATACCGAGCGTGAAG+AGG + chr6_4:88563141-88563160 None:intergenic 45.0%
GCTGAATCGATAGACTCTGA+TGG - chr6_4:88563191-88563210 Msa1002750:intron 45.0%
! TACTTAGCTCTCTCCTCCAA+TGG + chr6_4:88563471-88563490 None:intergenic 45.0%
ATGAGAGCAGCTGTGAGATA+TGG - chr6_4:88563504-88563523 Msa1002750:intron 45.0%
TGAGAGCAGCTGTGAGATAT+GGG - chr6_4:88563505-88563524 Msa1002750:intron 45.0%
AAGACTCAGTGTTCTGTTGG+AGG - chr6_4:88563547-88563566 Msa1002750:intron 45.0%
AGACTCAGTGTTCTGTTGGA+GGG - chr6_4:88563548-88563567 Msa1002750:intron 45.0%
TTACTGAAAGTCCAATGGGG+AGG + chr6_4:88563616-88563635 None:intergenic 45.0%
TTCATCAATGGGTCCCATTG+GGG - chr6_4:88563720-88563739 Msa1002750:intron 45.0%
!!! CGCCGCCATAGTCTTTTTTT+AGG - chr6_4:88564184-88564203 Msa1002750:CDS 45.0%
TATGGAAGCCAACCAAGAAG+AGG - chr6_4:88564512-88564531 Msa1002750:intron 45.0%
TTTCTTTGGCCTCCTCTTCT+TGG + chr6_4:88564527-88564546 None:intergenic 45.0%
ATGCACCCTCACTCTGATTA+TGG - chr6_4:88564650-88564669 Msa1002750:intron 45.0%
GGAAGCCATAATCAGAGTGA+GGG + chr6_4:88564658-88564677 None:intergenic 45.0%
AGGAAGCCATAATCAGAGTG+AGG + chr6_4:88564659-88564678 None:intergenic 45.0%
TCTCCTCCAAGATGAAGTAG+AGG - chr6_4:88564685-88564704 Msa1002750:intron 45.0%
CTCCTCCAAGATGAAGTAGA+GGG - chr6_4:88564686-88564705 Msa1002750:intron 45.0%
AACCCTCTACTTCATCTTGG+AGG + chr6_4:88564691-88564710 None:intergenic 45.0%
GCAAACCCTCTACTTCATCT+TGG + chr6_4:88564694-88564713 None:intergenic 45.0%
! AGCTAAGAGCAGAGTATCAG+TGG - chr6_4:88565323-88565342 Msa1002750:CDS 45.0%
TCACAGTGCAGTCAAAAGGA+AGG + chr6_4:88565362-88565381 None:intergenic 45.0%
TCTGTGTCCATGTAACGCTT+TGG + chr6_4:88565417-88565436 None:intergenic 45.0%
GTTACGCATGTCTCCTGCAA+TGG - chr6_4:88562205-88562224 Msa1002750:three_prime_UTR 50.0%
TTTGTGGGTCTTTCCGAAGC+TGG + chr6_4:88562347-88562366 None:intergenic 50.0%
TCGATACACCTCTTCACGCT+CGG - chr6_4:88563130-88563149 Msa1002750:intron 50.0%
TTTGGCCTCCTCTTCTTGGT+TGG + chr6_4:88564523-88564542 None:intergenic 50.0%
!! CAGGGCATGGTGGGTAAAAT+TGG + chr6_4:88564610-88564629 None:intergenic 50.0%
! CAAGGGTTAGGTCTGGTTCA+GGG + chr6_4:88564628-88564647 None:intergenic 50.0%
TGCATTCCAAGGGTTAGGTC+TGG + chr6_4:88564635-88564654 None:intergenic 50.0%
! AGAGTGAGGGTGCATTCCAA+GGG + chr6_4:88564645-88564664 None:intergenic 50.0%
! CATCTTGGAGGAGAAGTGTG+AGG + chr6_4:88564679-88564698 None:intergenic 50.0%
GGTCTCACAGTGCAGTCAAA+AGG + chr6_4:88565366-88565385 None:intergenic 50.0%
TGAAAGTCCAATGGGGAGGC+AGG + chr6_4:88563612-88563631 None:intergenic 55.0%
GGAAGCCAACCAAGAAGAGG+AGG - chr6_4:88564515-88564534 Msa1002750:intron 55.0%
GGACAATGGGAGCCAGATGT+TGG - chr6_4:88564581-88564600 Msa1002750:intron 55.0%
! GTTAGGTCTGGTTCAGGGCA+TGG + chr6_4:88564623-88564642 None:intergenic 55.0%
! CCAAGGGTTAGGTCTGGTTC+AGG + chr6_4:88564629-88564648 None:intergenic 55.0%
CCTGAACCAGACCTAACCCT+TGG - chr6_4:88564626-88564645 Msa1002750:intron 55.0%
! GAGGGTGCATTCCAAGGGTT+AGG + chr6_4:88564640-88564659 None:intergenic 55.0%
! CAGAGTGAGGGTGCATTCCA+AGG + chr6_4:88564646-88564665 None:intergenic 55.0%
GAGGCAGGCCAATCAGGCAA+AGG + chr6_4:88563597-88563616 None:intergenic 60.0%
AATGGGGAGGCAGGCCAATC+AGG + chr6_4:88563603-88563622 None:intergenic 60.0%
!! TGATTGGCCTGCCTCCCCAT+TGG - chr6_4:88563602-88563621 Msa1002750:intron 60.0%
! GGTCTGGTTCAGGGCATGGT+GGG + chr6_4:88564619-88564638 None:intergenic 60.0%
! AGGTCTGGTTCAGGGCATGG+TGG + chr6_4:88564620-88564639 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 88562205 88565588 88562205 ID=Msa1002750;Name=Msa1002750
chr6_4 mRNA 88562205 88565588 88562205 ID=Msa1002750-mRNA-1;Parent=Msa1002750;Name=Msa1002750-mRNA-1;_AED=0.21;_eAED=0.21;_QI=7|0.5|0.4|1|0.25|0.4|5|67|249
chr6_4 exon 88562205 88562523 88562205 ID=Msa1002750-mRNA-1:exon:17319;Parent=Msa1002750-mRNA-1
chr6_4 exon 88563356 88563362 88563356 ID=Msa1002750-mRNA-1:exon:17318;Parent=Msa1002750-mRNA-1
chr6_4 exon 88564162 88564397 88564162 ID=Msa1002750-mRNA-1:exon:17317;Parent=Msa1002750-mRNA-1
chr6_4 exon 88565291 88565470 88565291 ID=Msa1002750-mRNA-1:exon:17316;Parent=Msa1002750-mRNA-1
chr6_4 exon 88565507 88565588 88565507 ID=Msa1002750-mRNA-1:exon:17315;Parent=Msa1002750-mRNA-1
chr6_4 five_prime_UTR 88565582 88565588 88565582 ID=Msa1002750-mRNA-1:five_prime_utr;Parent=Msa1002750-mRNA-1
chr6_4 CDS 88565507 88565581 88565507 ID=Msa1002750-mRNA-1:cds;Parent=Msa1002750-mRNA-1
chr6_4 CDS 88565291 88565470 88565291 ID=Msa1002750-mRNA-1:cds;Parent=Msa1002750-mRNA-1
chr6_4 CDS 88564162 88564397 88564162 ID=Msa1002750-mRNA-1:cds;Parent=Msa1002750-mRNA-1
chr6_4 CDS 88563356 88563362 88563356 ID=Msa1002750-mRNA-1:cds;Parent=Msa1002750-mRNA-1
chr6_4 CDS 88562272 88562523 88562272 ID=Msa1002750-mRNA-1:cds;Parent=Msa1002750-mRNA-1
chr6_4 three_prime_UTR 88562205 88562271 88562205 ID=Msa1002750-mRNA-1:three_prime_utr;Parent=Msa1002750-mRNA-1
Gene Sequence

>Msa1002750

ATGTCTCCTGCAATGGCAATGAATGATGAAAAGAATGAGGATTGTCATACAATAGAAAATGAATATCATAAAGGAGTACCAAAGAAGTATATGTTTCCAGCTTCGGAAAGACCCACAAAGAGTATGGATGATTCAAATGTTGCTAAGGAAAATCTTCAGCTACCCATAATTGATTTCACTGATCTTATTGGTCCAAATAGGCTACAAGCTCTTGAGTCTCTAGCCAATGCTTGTGAACAATATGGATTTTTCCAGCTAGTAAATCACAACATATCAGATAATATAACAAGGAGCATCATAGATGTTGTAGGAAGATTCTTCGATCTTCCATTGGAGGAGAGAGCTAAGTATATGACAAGTGATATGAGAGCAGCTGTGAGATATGGGACCAGTTTCAGTCAAACAAAAGACTCAGTGTTCTGTTGGAGGGATTTCTTGAAACTCATTTGTAATCCTTTGCCTGATTGGCCTGCCTCCCCATTGGACTTTCAAGAAGTGATATTTAGCAACGGAAAATACAAGAGTGTATTACATAGGGTTCTGGTGAATGAAGCTAAGAGCAGAGTATCAGTGGCTTCTCTGCATAGCCTTCCTTTTGACTGCACTGTGAGACCGTCACCAAAACTCATTGATGAAGACAATCCAAAGCGTTACATGGACACAGATTTTGCTAGCTTTCTTGCGTATGTGTCCACAAGAGAAACCAAGAAAAAGGATTTCCTAGAGTCCAGAAAATTTACATACACATAA

Protein sequence

>Msa1002750

MSPAMAMNDEKNEDCHTIENEYHKGVPKKYMFPASERPTKSMDDSNVAKENLQLPIIDFTDLIGPNRLQALESLANACEQYGFFQLVNHNISDNITRSIIDVVGRFFDLPLEERAKYMTSDMRAAVRYGTSFSQTKDSVFCWRDFLKLICNPLPDWPASPLDFQEVIFSNGKYKSVLHRVLVNEAKSRVSVASLHSLPFDCTVRPSPKLIDEDNPKRYMDTDFASFLAYVSTRETKKKDFLESRKFTYT*