Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1002750 | KAG2406119.1 | 68.284 | 268 | 63 | 4 | 1 | 246 | 43 | 310 | 3.65e-127 | 373 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1002750 | sp|Q6YYX9|SLC1_ORYSJ | 46.575 | 146 | 73 | 2 | 26 | 166 | 52 | 197 | 1.80e-36 | 135 |
Msa1002750 | sp|Q6YYX9|SLC1_ORYSJ | 48.485 | 99 | 51 | 0 | 148 | 246 | 284 | 382 | 5.30e-22 | 96.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1002750 | A0A1R3IH33 | 58.304 | 283 | 79 | 4 | 3 | 247 | 4 | 285 | 3.04e-108 | 323 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0614960 | Msa1002750 | 0.832527 | 8.984136e-56 | -8.615850e-47 |
Msa0655370 | Msa1002750 | 0.831619 | 1.506380e-55 | -8.615850e-47 |
Msa0699170 | Msa1002750 | 0.831021 | 2.113283e-55 | -8.615850e-47 |
Msa0727230 | Msa1002750 | 0.837812 | 4.167420e-57 | -8.615850e-47 |
Msa0738680 | Msa1002750 | 0.806491 | 8.015666e-50 | -8.615850e-47 |
Msa0750790 | Msa1002750 | 0.814083 | 1.845193e-51 | -8.615850e-47 |
Msa0750830 | Msa1002750 | 0.808788 | 2.606997e-50 | -8.615850e-47 |
Msa0819150 | Msa1002750 | 0.811231 | 7.765814e-51 | -8.615850e-47 |
Msa0438520 | Msa1002750 | 0.813360 | 2.663097e-51 | -8.615850e-47 |
Msa0985380 | Msa1002750 | 0.803295 | 3.732140e-49 | -8.615850e-47 |
Msa1002750 | Msa1079870 | 0.809699 | 1.663286e-50 | -8.615850e-47 |
Msa1002750 | Msa1085820 | 0.808577 | 2.893121e-50 | -8.615850e-47 |
Msa1002750 | Msa1167910 | 0.888799 | 4.285919e-73 | -8.615850e-47 |
Msa1002750 | Msa1167940 | 0.897170 | 1.822496e-76 | -8.615850e-47 |
Msa1002750 | Msa1317740 | 0.805554 | 1.262219e-49 | -8.615850e-47 |
Msa1002750 | Msa1407040 | 0.814628 | 1.398215e-51 | -8.615850e-47 |
Msa1002750 | Msa1437590 | 0.801643 | 8.173602e-49 | -8.615850e-47 |
Msa1002750 | Msa1453890 | 0.822558 | 2.221661e-53 | -8.615850e-47 |
Msa0284730 | Msa1002750 | 0.800828 | 1.199744e-48 | -8.615850e-47 |
Msa0524710 | Msa1002750 | 0.800736 | 1.253106e-48 | -8.615850e-47 |
Msa0561830 | Msa1002750 | 0.828592 | 8.252712e-55 | -8.615850e-47 |
Msa0847140 | Msa1002750 | 0.815475 | 9.073040e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1002750 | MtrunA17_Chr7g0265221 | 85.484 | 186 | 10 | 3 | 1 | 169 | 1 | 186 | 5.48e-111 | 324 |
Msa1002750 | MtrunA17_Chr7g0265221 | 80.392 | 102 | 20 | 0 | 148 | 249 | 282 | 383 | 3.41e-48 | 163 |
Msa1002750 | MtrunA17_Chr1g0179801 | 63.187 | 182 | 51 | 3 | 1 | 166 | 1 | 182 | 9.21e-78 | 239 |
Msa1002750 | MtrunA17_Chr1g0179801 | 74.074 | 81 | 21 | 0 | 167 | 247 | 294 | 374 | 5.10e-34 | 125 |
Msa1002750 | MtrunA17_Chr7g0250511 | 36.585 | 164 | 91 | 6 | 26 | 184 | 25 | 180 | 2.58e-29 | 112 |
Msa1002750 | MtrunA17_Chr7g0250511 | 39.759 | 83 | 50 | 0 | 164 | 246 | 269 | 351 | 9.44e-15 | 72.8 |
Msa1002750 | MtrunA17_Chr3g0128001 | 36.667 | 150 | 83 | 3 | 22 | 167 | 11 | 152 | 1.67e-25 | 102 |
Msa1002750 | MtrunA17_Chr8g0345831 | 35.417 | 144 | 85 | 2 | 26 | 165 | 18 | 157 | 2.43e-25 | 102 |
Msa1002750 | MtrunA17_Chr1g0170641 | 31.953 | 169 | 99 | 4 | 8 | 167 | 3 | 164 | 1.52e-24 | 95.9 |
Msa1002750 | MtrunA17_Chr5g0426891 | 37.879 | 132 | 79 | 1 | 39 | 167 | 24 | 155 | 1.29e-23 | 97.4 |
Msa1002750 | MtrunA17_Chr5g0426891 | 35.106 | 94 | 58 | 3 | 151 | 242 | 246 | 338 | 2.77e-11 | 62.8 |
Msa1002750 | MtrunA17_Chr3g0126741 | 31.250 | 160 | 105 | 3 | 39 | 193 | 43 | 202 | 1.90e-19 | 86.3 |
Msa1002750 | MtrunA17_Chr4g0050031 | 35.345 | 116 | 71 | 2 | 54 | 165 | 62 | 177 | 3.50e-19 | 85.5 |
Msa1002750 | MtrunA17_Chr7g0232161 | 31.288 | 163 | 92 | 7 | 26 | 180 | 36 | 186 | 3.84e-19 | 84.7 |
Msa1002750 | MtrunA17_Chr7g0239111 | 32.515 | 163 | 90 | 7 | 26 | 180 | 31 | 181 | 8.46e-19 | 84.3 |
Msa1002750 | MtrunA17_Chr7g0242551 | 30.323 | 155 | 99 | 3 | 26 | 172 | 26 | 179 | 3.00e-18 | 82.8 |
Msa1002750 | MtrunA17_Chr7g0239121 | 32.515 | 163 | 90 | 7 | 26 | 180 | 27 | 177 | 3.18e-18 | 82.8 |
Msa1002750 | MtrunA17_Chr4g0006371 | 29.518 | 166 | 95 | 5 | 26 | 172 | 25 | 187 | 3.43e-18 | 82.8 |
Msa1002750 | MtrunA17_Chr7g0239101 | 30.675 | 163 | 93 | 7 | 26 | 180 | 31 | 181 | 9.13e-18 | 81.3 |
Msa1002750 | MtrunA17_Chr2g0296371 | 29.480 | 173 | 107 | 4 | 3 | 167 | 5 | 170 | 4.74e-17 | 79.3 |
Msa1002750 | MtrunA17_Chr1g0184101 | 27.517 | 149 | 99 | 4 | 24 | 167 | 12 | 156 | 1.45e-16 | 77.8 |
Msa1002750 | MtrunA17_Chr3g0113641 | 31.646 | 158 | 89 | 5 | 26 | 172 | 26 | 175 | 1.50e-16 | 77.8 |
Msa1002750 | MtrunA17_Chr1g0184151 | 28.947 | 152 | 96 | 5 | 26 | 170 | 15 | 161 | 4.14e-16 | 76.6 |
Msa1002750 | MtrunA17_Chr8g0375661 | 30.534 | 131 | 80 | 4 | 26 | 152 | 29 | 152 | 9.13e-16 | 72.8 |
Msa1002750 | MtrunA17_Chr3g0093751 | 34.646 | 127 | 73 | 3 | 26 | 149 | 29 | 148 | 1.08e-15 | 75.5 |
Msa1002750 | MtrunA17_Chr8g0375641 | 30.000 | 130 | 82 | 3 | 26 | 152 | 29 | 152 | 1.46e-15 | 72.4 |
Msa1002750 | MtrunA17_Chr3g0093741 | 33.858 | 127 | 74 | 3 | 26 | 149 | 29 | 148 | 2.01e-15 | 74.7 |
Msa1002750 | MtrunA17_Chr8g0375601 | 30.233 | 129 | 85 | 3 | 26 | 152 | 22 | 147 | 3.96e-15 | 73.9 |
Msa1002750 | MtrunA17_Chr3g0093761 | 35.433 | 127 | 71 | 4 | 26 | 149 | 29 | 147 | 5.90e-15 | 73.2 |
Msa1002750 | MtrunA17_Chr8g0375671 | 30.769 | 130 | 81 | 4 | 26 | 152 | 29 | 152 | 9.13e-15 | 72.8 |
Msa1002750 | MtrunA17_Chr5g0398291 | 28.571 | 161 | 106 | 3 | 26 | 177 | 19 | 179 | 9.33e-15 | 72.8 |
Msa1002750 | MtrunA17_Chr1g0184161 | 26.174 | 149 | 100 | 3 | 24 | 167 | 13 | 156 | 2.07e-14 | 71.6 |
Msa1002750 | MtrunA17_Chr1g0158021 | 31.746 | 126 | 77 | 3 | 46 | 167 | 41 | 161 | 2.58e-14 | 70.5 |
Msa1002750 | MtrunA17_Chr8g0354241 | 27.922 | 154 | 103 | 2 | 5 | 154 | 23 | 172 | 3.13e-14 | 71.2 |
Msa1002750 | MtrunA17_Chr5g0421091 | 32.812 | 128 | 79 | 4 | 26 | 153 | 22 | 142 | 3.17e-14 | 71.2 |
Msa1002750 | MtrunA17_Chr7g0265351 | 38.542 | 96 | 56 | 1 | 54 | 149 | 39 | 131 | 3.59e-14 | 70.9 |
Msa1002750 | MtrunA17_Chr3g0114871 | 26.966 | 178 | 114 | 5 | 10 | 181 | 2 | 169 | 4.00e-14 | 70.1 |
Msa1002750 | MtrunA17_Chr5g0420891 | 32.308 | 130 | 77 | 5 | 26 | 153 | 23 | 143 | 6.17e-14 | 67.8 |
Msa1002750 | MtrunA17_Chr8g0354261 | 28.571 | 154 | 102 | 2 | 5 | 154 | 23 | 172 | 6.27e-14 | 70.5 |
Msa1002750 | MtrunA17_Chr5g0437181 | 28.188 | 149 | 94 | 4 | 26 | 166 | 25 | 168 | 7.26e-14 | 70.1 |
Msa1002750 | MtrunA17_Chr7g0239821 | 34.074 | 135 | 75 | 6 | 53 | 180 | 63 | 190 | 7.42e-14 | 70.1 |
Msa1002750 | MtrunA17_Chr1g0184111 | 25.683 | 183 | 118 | 5 | 24 | 201 | 12 | 181 | 8.78e-14 | 70.1 |
Msa1002750 | MtrunA17_Chr8g0364161 | 32.381 | 105 | 69 | 2 | 52 | 154 | 65 | 169 | 1.24e-13 | 67.4 |
Msa1002750 | MtrunA17_Chr1g0184121 | 25.137 | 183 | 119 | 5 | 24 | 201 | 12 | 181 | 1.30e-13 | 69.3 |
Msa1002750 | MtrunA17_Chr2g0311641 | 29.197 | 137 | 86 | 3 | 26 | 157 | 33 | 163 | 1.48e-13 | 66.6 |
Msa1002750 | MtrunA17_Chr5g0424201 | 32.450 | 151 | 87 | 5 | 31 | 173 | 23 | 166 | 1.53e-13 | 69.3 |
Msa1002750 | MtrunA17_Chr3g0125201 | 30.303 | 132 | 86 | 3 | 52 | 183 | 1 | 126 | 1.58e-13 | 68.9 |
Msa1002750 | MtrunA17_Chr5g0424211 | 31.126 | 151 | 91 | 5 | 31 | 173 | 21 | 166 | 1.65e-13 | 68.9 |
Msa1002750 | MtrunA17_Chr4g0011311 | 27.607 | 163 | 111 | 5 | 24 | 182 | 39 | 198 | 2.36e-13 | 68.6 |
Msa1002750 | MtrunA17_Chr5g0420941 | 28.125 | 128 | 85 | 4 | 26 | 153 | 22 | 142 | 4.90e-13 | 67.8 |
Msa1002750 | MtrunA17_Chr5g0423211 | 26.950 | 141 | 92 | 5 | 15 | 153 | 13 | 144 | 4.97e-13 | 67.8 |
Msa1002750 | MtrunA17_Chr1g0170631 | 38.272 | 81 | 49 | 1 | 167 | 246 | 112 | 192 | 5.74e-13 | 65.9 |
Msa1002750 | MtrunA17_Chr5g0420901 | 31.159 | 138 | 84 | 5 | 18 | 153 | 15 | 143 | 7.00e-13 | 67.4 |
Msa1002750 | MtrunA17_Chr7g0220011 | 29.333 | 150 | 93 | 4 | 23 | 167 | 13 | 154 | 7.36e-13 | 67.0 |
Msa1002750 | MtrunA17_Chr2g0311741 | 35.593 | 118 | 67 | 3 | 41 | 154 | 17 | 129 | 1.05e-12 | 66.6 |
Msa1002750 | MtrunA17_Chr1g0187831 | 29.104 | 134 | 92 | 2 | 26 | 157 | 43 | 175 | 1.14e-12 | 67.0 |
Msa1002750 | MtrunA17_Chr5g0420981 | 31.000 | 100 | 68 | 1 | 53 | 152 | 52 | 150 | 1.33e-12 | 66.6 |
Msa1002750 | MtrunA17_Chr6g0455481 | 26.829 | 164 | 103 | 4 | 23 | 180 | 16 | 168 | 1.52e-12 | 66.2 |
Msa1002750 | MtrunA17_Chr7g0220001 | 26.875 | 160 | 101 | 5 | 23 | 177 | 15 | 163 | 1.74e-12 | 66.2 |
Msa1002750 | MtrunA17_Chr2g0311631 | 25.843 | 178 | 120 | 4 | 26 | 197 | 33 | 204 | 1.92e-12 | 66.2 |
Msa1002750 | MtrunA17_Chr3g0087031 | 30.894 | 123 | 76 | 4 | 51 | 167 | 57 | 176 | 2.06e-12 | 65.9 |
Msa1002750 | MtrunA17_Chr1g0161111 | 30.392 | 102 | 70 | 1 | 53 | 154 | 131 | 231 | 3.66e-12 | 65.5 |
Msa1002750 | MtrunA17_Chr2g0311681 | 32.203 | 118 | 76 | 2 | 41 | 154 | 48 | 165 | 3.96e-12 | 65.1 |
Msa1002750 | MtrunA17_Chr1g0161081 | 29.412 | 102 | 71 | 1 | 53 | 154 | 72 | 172 | 5.82e-12 | 64.7 |
Msa1002750 | MtrunA17_Chr2g0314381 | 30.534 | 131 | 78 | 4 | 26 | 152 | 54 | 175 | 9.08e-12 | 64.3 |
Msa1002750 | MtrunA17_Chr8g0375701 | 28.372 | 215 | 125 | 10 | 20 | 215 | 25 | 229 | 9.98e-12 | 63.9 |
Msa1002750 | MtrunA17_Chr2g0311711 | 31.356 | 118 | 77 | 2 | 41 | 154 | 52 | 169 | 1.06e-11 | 63.9 |
Msa1002750 | MtrunA17_Chr1g0187821 | 32.479 | 117 | 77 | 1 | 43 | 157 | 56 | 172 | 1.08e-11 | 63.9 |
Msa1002750 | MtrunA17_Chr5g0421011 | 31.068 | 103 | 65 | 3 | 53 | 153 | 46 | 144 | 1.41e-11 | 63.5 |
Msa1002750 | MtrunA17_Chr8g0336851 | 32.540 | 126 | 75 | 5 | 54 | 172 | 60 | 182 | 1.53e-11 | 63.5 |
Msa1002750 | MtrunA17_Chr2g0311691 | 32.381 | 105 | 69 | 1 | 52 | 154 | 61 | 165 | 1.67e-11 | 63.5 |
Msa1002750 | MtrunA17_Chr7g0247991 | 27.826 | 115 | 81 | 2 | 42 | 154 | 55 | 169 | 1.96e-11 | 63.2 |
Msa1002750 | MtrunA17_Chr8g0370711 | 29.365 | 126 | 82 | 3 | 48 | 167 | 46 | 170 | 2.07e-11 | 63.2 |
Msa1002750 | MtrunA17_Chr8g0365241 | 30.000 | 100 | 69 | 1 | 53 | 152 | 56 | 154 | 3.28e-11 | 62.4 |
Msa1002750 | MtrunA17_Chr8g0336761 | 30.159 | 126 | 78 | 5 | 54 | 172 | 60 | 182 | 4.20e-11 | 62.0 |
Msa1002750 | MtrunA17_Chr4g0066121 | 33.333 | 129 | 78 | 5 | 43 | 166 | 48 | 173 | 4.60e-11 | 62.0 |
Msa1002750 | MtrunA17_Chr1g0161041 | 26.471 | 102 | 74 | 1 | 53 | 154 | 95 | 195 | 6.27e-11 | 61.6 |
Msa1002750 | MtrunA17_Chr2g0311921 | 29.323 | 133 | 87 | 3 | 54 | 181 | 54 | 184 | 6.79e-11 | 61.6 |
Msa1002750 | MtrunA17_Chr4g0055921 | 39.683 | 63 | 35 | 1 | 52 | 114 | 7 | 66 | 6.89e-11 | 57.8 |
Msa1002750 | MtrunA17_Chr7g0266651 | 23.288 | 146 | 105 | 3 | 9 | 152 | 18 | 158 | 7.38e-11 | 61.6 |
Msa1002750 | MtrunA17_Chr7g0235951 | 27.922 | 154 | 103 | 4 | 6 | 157 | 25 | 172 | 8.37e-11 | 61.2 |
Msa1002750 | MtrunA17_Chr5g0412651 | 31.579 | 95 | 61 | 2 | 54 | 144 | 38 | 132 | 8.46e-11 | 61.2 |
Msa1002750 | MtrunA17_Chr3g0114861 | 26.667 | 150 | 95 | 5 | 24 | 167 | 15 | 155 | 8.62e-11 | 61.2 |
Msa1002750 | MtrunA17_Chr8g0336831 | 27.097 | 155 | 106 | 4 | 54 | 202 | 60 | 213 | 8.89e-11 | 60.5 |
Msa1002750 | MtrunA17_Chr8g0348081 | 25.974 | 154 | 106 | 3 | 54 | 201 | 60 | 211 | 8.98e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1002750 | AT2G36690.2 | 50.877 | 171 | 76 | 4 | 1 | 164 | 6 | 175 | 3.03e-55 | 181 |
Msa1002750 | AT2G36690.2 | 65.060 | 83 | 29 | 0 | 167 | 249 | 284 | 366 | 3.06e-31 | 119 |
Msa1002750 | AT2G36690.1 | 50.877 | 171 | 76 | 4 | 1 | 164 | 6 | 175 | 3.03e-55 | 181 |
Msa1002750 | AT2G36690.1 | 65.060 | 83 | 29 | 0 | 167 | 249 | 284 | 366 | 3.06e-31 | 119 |
Msa1002750 | AT4G10500.1 | 40.690 | 145 | 78 | 2 | 26 | 166 | 20 | 160 | 1.24e-30 | 116 |
Msa1002750 | AT2G44800.1 | 31.694 | 183 | 117 | 3 | 5 | 182 | 6 | 185 | 1.03e-29 | 114 |
Msa1002750 | AT2G44800.1 | 42.683 | 82 | 47 | 0 | 164 | 245 | 272 | 353 | 1.66e-14 | 72.4 |
Msa1002750 | AT3G60290.1 | 35.185 | 162 | 97 | 3 | 26 | 182 | 27 | 185 | 1.77e-29 | 114 |
Msa1002750 | AT3G60290.1 | 41.176 | 85 | 50 | 0 | 161 | 245 | 269 | 353 | 3.87e-14 | 71.2 |
Msa1002750 | AT4G10490.1 | 37.241 | 145 | 83 | 2 | 26 | 166 | 18 | 158 | 1.50e-28 | 111 |
Msa1002750 | AT5G07480.1 | 36.986 | 146 | 78 | 4 | 26 | 165 | 24 | 161 | 1.16e-22 | 95.5 |
Msa1002750 | AT5G07480.1 | 39.726 | 73 | 44 | 0 | 167 | 239 | 274 | 346 | 4.29e-12 | 65.5 |
Msa1002750 | AT5G24530.1 | 32.215 | 149 | 89 | 2 | 23 | 167 | 12 | 152 | 5.05e-22 | 93.6 |
Msa1002750 | AT2G38240.1 | 32.468 | 154 | 89 | 6 | 26 | 172 | 23 | 168 | 1.23e-19 | 87.0 |
Msa1002750 | AT2G06960.1 | 61.404 | 57 | 22 | 0 | 180 | 236 | 92 | 148 | 2.82e-16 | 73.9 |
Msa1002750 | AT3G13610.1 | 30.159 | 126 | 80 | 3 | 24 | 148 | 36 | 154 | 4.13e-16 | 77.0 |
Msa1002750 | AT3G11180.2 | 28.289 | 152 | 102 | 3 | 26 | 172 | 67 | 216 | 1.40e-15 | 75.9 |
Msa1002750 | AT3G11180.1 | 28.289 | 152 | 102 | 3 | 26 | 172 | 67 | 216 | 1.47e-15 | 75.9 |
Msa1002750 | AT1G55290.1 | 31.250 | 128 | 77 | 4 | 24 | 148 | 35 | 154 | 5.06e-14 | 71.2 |
Msa1002750 | AT5G05600.2 | 30.952 | 168 | 99 | 6 | 26 | 181 | 38 | 200 | 6.77e-14 | 70.1 |
Msa1002750 | AT5G05600.1 | 30.952 | 168 | 99 | 6 | 26 | 181 | 38 | 200 | 1.07e-13 | 70.1 |
Msa1002750 | AT1G17010.1 | 30.000 | 170 | 106 | 6 | 26 | 187 | 29 | 193 | 2.90e-13 | 68.9 |
Msa1002750 | AT3G55970.2 | 29.801 | 151 | 96 | 6 | 25 | 167 | 24 | 172 | 8.75e-13 | 67.0 |
Msa1002750 | AT3G55970.1 | 29.801 | 151 | 96 | 6 | 25 | 167 | 24 | 172 | 9.85e-13 | 67.4 |
Msa1002750 | AT5G07480.2 | 39.726 | 73 | 44 | 0 | 167 | 239 | 165 | 237 | 2.07e-12 | 65.5 |
Msa1002750 | AT3G19010.3 | 26.316 | 152 | 84 | 4 | 36 | 165 | 10 | 155 | 3.20e-12 | 65.5 |
Msa1002750 | AT3G19010.1 | 26.316 | 152 | 84 | 4 | 36 | 165 | 10 | 155 | 4.77e-12 | 65.5 |
Msa1002750 | AT3G19010.4 | 26.316 | 152 | 84 | 4 | 36 | 165 | 10 | 155 | 4.77e-12 | 65.5 |
Msa1002750 | AT4G25420.2 | 29.268 | 123 | 77 | 4 | 26 | 146 | 40 | 154 | 6.68e-12 | 64.7 |
Msa1002750 | AT3G12900.1 | 28.986 | 138 | 86 | 4 | 26 | 157 | 33 | 164 | 7.03e-12 | 64.7 |
Msa1002750 | AT4G25420.1 | 29.268 | 123 | 77 | 4 | 26 | 146 | 40 | 154 | 9.29e-12 | 64.7 |
Msa1002750 | AT3G19010.2 | 26.316 | 152 | 84 | 4 | 36 | 165 | 10 | 155 | 1.01e-11 | 63.9 |
Msa1002750 | AT3G21420.1 | 33.607 | 122 | 70 | 4 | 53 | 165 | 54 | 173 | 1.06e-11 | 64.3 |
Msa1002750 | AT5G12270.1 | 32.258 | 124 | 75 | 3 | 26 | 148 | 33 | 148 | 4.62e-11 | 62.4 |
Find 50 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTGATTTCACTGATCTTAT+TGG | 0.180414 | 6_4:-88565355 | Msa1002750:CDS |
TCAAGAGCTTGTAGCCTATT+TGG | 0.181404 | 6_4:+88565331 | None:intergenic |
AAGATCAGTGAAATCAATTA+TGG | 0.215332 | 6_4:+88565360 | None:intergenic |
TTTGTAATCCTTTGCCTGAT+TGG | 0.263926 | 6_4:-88564185 | Msa1002750:CDS |
GCTGGAAACATATACTTCTT+TGG | 0.286117 | 6_4:+88565445 | None:intergenic |
CACAAGAGAAACCAAGAAAA+AGG | 0.313151 | 6_4:-88562307 | Msa1002750:CDS |
CTGATCTTATTGGTCCAAAT+AGG | 0.329604 | 6_4:-88565345 | Msa1002750:CDS |
TCATCATTCATTGCCATTGC+AGG | 0.340430 | 6_4:+88565553 | None:intergenic |
GCCAATGCTTGTGAACAATA+TGG | 0.342407 | 6_4:-88565301 | Msa1002750:CDS |
GAAGTATATGTTTCCAGCTT+CGG | 0.353233 | 6_4:-88565440 | Msa1002750:CDS |
AATGGGGAGGCAGGCCAATC+AGG | 0.371866 | 6_4:+88564171 | None:intergenic |
TTGTCTTCATCAATGAGTTT+TGG | 0.388202 | 6_4:+88562381 | None:intergenic |
ATGAGAGCAGCTGTGAGATA+TGG | 0.390983 | 6_4:-88564267 | Msa1002750:CDS |
GGAAAGACCCACAAAGAGTA+TGG | 0.391049 | 6_4:-88565419 | Msa1002750:CDS |
TGAATCATCCATACTCTTTG+TGG | 0.395543 | 6_4:+88565411 | None:intergenic |
TGATTGGCCTGCCTCCCCAT+TGG | 0.400016 | 6_4:-88564169 | Msa1002750:CDS |
TTTGTGGGTCTTTCCGAAGC+TGG | 0.412657 | 6_4:+88565427 | None:intergenic |
GAGTGTATTACATAGGGTTC+TGG | 0.416452 | 6_4:-88562478 | Msa1002750:CDS |
TCTGTGTCCATGTAACGCTT+TGG | 0.429309 | 6_4:+88562357 | None:intergenic |
GAATCATCCATACTCTTTGT+GGG | 0.437196 | 6_4:+88565412 | None:intergenic |
TCCATATTGTTCACAAGCAT+TGG | 0.440200 | 6_4:+88565300 | None:intergenic |
ATTAGATATTGAAGTGATCA+AGG | 0.453016 | 6_4:-88562206 | Msa1002750:three_prime_UTR |
TGAGAGCAGCTGTGAGATAT+GGG | 0.459658 | 6_4:-88564266 | Msa1002750:CDS |
CAAAAGACTCAGTGTTCTGT+TGG | 0.465360 | 6_4:-88564227 | Msa1002750:CDS |
AGATCAGTGAAATCAATTAT+GGG | 0.469482 | 6_4:+88565361 | None:intergenic |
TGAAAGTCCAATGGGGAGGC+AGG | 0.469731 | 6_4:+88564162 | None:intergenic |
ACACTTACTGAAAGTCCAAT+GGG | 0.477635 | 6_4:+88564154 | None:intergenic |
ATAGAAAATGAATATCATAA+AGG | 0.491733 | 6_4:-88565508 | Msa1002750:CDS |
AGGAGCATCATAGATGTTGT+AGG | 0.494826 | 6_4:-88564342 | Msa1002750:CDS |
AAGATTCTTCGATCTTCCAT+TGG | 0.494960 | 6_4:-88564319 | Msa1002750:CDS |
ATTCTTCGATCTTCCATTGG+AGG | 0.496137 | 6_4:-88564316 | Msa1002750:CDS |
AATACAAGAGTGTATTACAT+AGG | 0.514652 | 6_4:-88562485 | Msa1002750:CDS |
GGATGATTCAAATGTTGCTA+AGG | 0.521576 | 6_4:-88565398 | Msa1002750:CDS |
GGTCTCACAGTGCAGTCAAA+AGG | 0.526151 | 6_4:+88562408 | None:intergenic |
AAGACTCAGTGTTCTGTTGG+AGG | 0.531960 | 6_4:-88564224 | Msa1002750:CDS |
AGACAATCCAAAGCGTTACA+TGG | 0.547718 | 6_4:-88562364 | Msa1002750:CDS |
TACTTAGCTCTCTCCTCCAA+TGG | 0.547880 | 6_4:+88564303 | None:intergenic |
AGACTCAGTGTTCTGTTGGA+GGG | 0.559012 | 6_4:-88564223 | Msa1002750:CDS |
ATACAAGAGTGTATTACATA+GGG | 0.568540 | 6_4:-88562484 | Msa1002750:CDS |
AACACTTACTGAAAGTCCAA+TGG | 0.582866 | 6_4:+88564153 | None:intergenic |
GTTACGCATGTCTCCTGCAA+TGG | 0.583325 | 6_4:-88565566 | Msa1002750:exon |
TTAGATATTGAAGTGATCAA+GGG | 0.583845 | 6_4:-88562205 | Msa1002750:three_prime_UTR |
AGCTAAGAGCAGAGTATCAG+TGG | 0.587185 | 6_4:-88562448 | Msa1002750:CDS |
GAGGCAGGCCAATCAGGCAA+AGG | 0.590329 | 6_4:+88564177 | None:intergenic |
AATGAATGATGAAAAGAATG+AGG | 0.605075 | 6_4:-88565542 | Msa1002750:CDS |
TCACAGTGCAGTCAAAAGGA+AGG | 0.626843 | 6_4:+88562412 | None:intergenic |
ATTTATCAGATATTTAGCAA+CGG | 0.627515 | 6_4:-88562510 | Msa1002750:intron |
TTACTGAAAGTCCAATGGGG+AGG | 0.691760 | 6_4:+88564158 | None:intergenic |
ACATATCAGATAATATAACA+AGG | 0.711804 | 6_4:-88564362 | Msa1002750:CDS |
CACTTACTGAAAGTCCAATG+GGG | 0.774600 | 6_4:+88564155 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAATAATAATATGAATTA+AGG | + | chr6_4:88563663-88563682 | None:intergenic | 10.0% |
!!! | ATATTATTATTTCATTGATT+TGG | - | chr6_4:88563669-88563688 | Msa1002750:intron | 10.0% |
!! | CAAAATATATTAAAATAGTA+AGG | - | chr6_4:88563804-88563823 | Msa1002750:intron | 10.0% |
!! | TAATAATATTATGAAAGAAT+TGG | - | chr6_4:88564560-88564579 | Msa1002750:intron | 10.0% |
!!! | TTAATGTTAGTTTATTAATT+TGG | + | chr6_4:88564849-88564868 | None:intergenic | 10.0% |
!! | ATAGAAAATGAATATCATAA+AGG | - | chr6_4:88562263-88562282 | Msa1002750:exon | 15.0% |
!! | TCAAAATCTACATTTAAATT+TGG | + | chr6_4:88562728-88562747 | None:intergenic | 15.0% |
!!! | AATGTAGATTTTGATTTTAA+AGG | - | chr6_4:88562734-88562753 | Msa1002750:intron | 15.0% |
!! | TATTGTTAGACAAATAAATT+AGG | + | chr6_4:88562941-88562960 | None:intergenic | 15.0% |
!!! | CTTTTGTTAATTAATCAAAT+TGG | - | chr6_4:88563763-88563782 | Msa1002750:intron | 15.0% |
!! | TTGTAAATCATTATTCAAAA+TGG | - | chr6_4:88563913-88563932 | Msa1002750:intron | 15.0% |
!!! | TAAATTAATCTTTGAAATTG+TGG | + | chr6_4:88564326-88564345 | None:intergenic | 15.0% |
!!! | AATTGTAAACATTTTTTGAA+CGG | + | chr6_4:88564938-88564957 | None:intergenic | 15.0% |
!!! | CAAAAAATGTTTACAATTTT+TGG | - | chr6_4:88564940-88564959 | Msa1002750:intron | 15.0% |
!! | TTTAAGAAAAAAAATCTTTG+AGG | - | chr6_4:88565026-88565045 | Msa1002750:intron | 15.0% |
!! | TTCCTAGAAAAATTTCAATT+TGG | - | chr6_4:88562846-88562865 | Msa1002750:intron | 20.0% |
!!! | GCTATATTCGATTTTTATAT+TGG | - | chr6_4:88563029-88563048 | Msa1002750:intron | 20.0% |
!! | TATTGGTCATAATTCATTTA+AGG | - | chr6_4:88563046-88563065 | Msa1002750:intron | 20.0% |
!!! | CTAACTTGTTTTTATAAAGA+AGG | + | chr6_4:88563076-88563095 | None:intergenic | 20.0% |
!! | GTCTCACATATATTAAAATA+AGG | + | chr6_4:88563100-88563119 | None:intergenic | 20.0% |
!!! | AACTTTGTTTTTAATATACG+TGG | - | chr6_4:88563299-88563318 | Msa1002750:intron | 20.0% |
!!! | ACTTTGTTTTTAATATACGT+GGG | - | chr6_4:88563300-88563319 | Msa1002750:intron | 20.0% |
!! | ACATATCAGATAATATAACA+AGG | - | chr6_4:88563409-88563428 | Msa1002750:intron | 20.0% |
!! | TAATTAATCAAATTGGTTAC+AGG | - | chr6_4:88563770-88563789 | Msa1002750:intron | 20.0% |
!! | TAGTTCAATACTATGTAAAT+TGG | - | chr6_4:88563873-88563892 | Msa1002750:intron | 20.0% |
!! | TTATTAATTTCTAACGTTAG+AGG | - | chr6_4:88563941-88563960 | Msa1002750:intron | 20.0% |
!!! | TATTATTTTAAACAGAGAAG+TGG | - | chr6_4:88564416-88564435 | Msa1002750:intron | 20.0% |
!! | CATTAATAAACTAACTCATA+CGG | - | chr6_4:88564863-88564882 | Msa1002750:intron | 20.0% |
!! | ATTAATAAACTAACTCATAC+GGG | - | chr6_4:88564864-88564883 | Msa1002750:intron | 20.0% |
!! | ATTTATCAGATATTTAGCAA+CGG | - | chr6_4:88565261-88565280 | Msa1002750:intron | 20.0% |
!!! | TTATGTGTATGTAAATTTTC+TGG | + | chr6_4:88565502-88565521 | None:intergenic | 20.0% |
! | AATGAATGATGAAAAGAATG+AGG | - | chr6_4:88562229-88562248 | Msa1002750:three_prime_UTR | 25.0% |
! | AGATCAGTGAAATCAATTAT+GGG | + | chr6_4:88562413-88562432 | None:intergenic | 25.0% |
! | AAGATCAGTGAAATCAATTA+TGG | + | chr6_4:88562414-88562433 | None:intergenic | 25.0% |
!! | ATTGATTTCACTGATCTTAT+TGG | - | chr6_4:88562416-88562435 | Msa1002750:CDS | 25.0% |
!! | CTCCAAATTGAAATTTTTCT+AGG | + | chr6_4:88562851-88562870 | None:intergenic | 25.0% |
!! | TTTTTAATATACGTGGGATT+TGG | - | chr6_4:88563306-88563325 | Msa1002750:intron | 25.0% |
! | AATCAAAGCAAATTCATCAA+TGG | - | chr6_4:88563708-88563727 | Msa1002750:intron | 25.0% |
! | ATCAAAGCAAATTCATCAAT+GGG | - | chr6_4:88563709-88563728 | Msa1002750:intron | 25.0% |
!! | TATCAATGTGTGGAATTTTA+AGG | + | chr6_4:88563849-88563868 | None:intergenic | 25.0% |
!!! | GAACTATTTTTATCAATGTG+TGG | + | chr6_4:88563859-88563878 | None:intergenic | 25.0% |
!! | ACAAATTAGTTCTTGTATGA+TGG | - | chr6_4:88564111-88564130 | Msa1002750:intron | 25.0% |
!! | GACATCAATTAACAGTTTTT+GGG | + | chr6_4:88564304-88564323 | None:intergenic | 25.0% |
! | TATTGTCAAGAACAAATGTT+TGG | + | chr6_4:88564463-88564482 | None:intergenic | 25.0% |
! | ACATTTGTTCTTGACAATAA+TGG | - | chr6_4:88564464-88564483 | Msa1002750:intron | 25.0% |
!!! | ATTGTTGTTGTCATTTTCTT+TGG | + | chr6_4:88564541-88564560 | None:intergenic | 25.0% |
! | ATTATGAAAGAATTGGACAA+TGG | - | chr6_4:88564567-88564586 | Msa1002750:intron | 25.0% |
! | TTATGAAAGAATTGGACAAT+GGG | - | chr6_4:88564568-88564587 | Msa1002750:intron | 25.0% |
! | AAATCCAATATCAAGACAAA+TGG | - | chr6_4:88564714-88564733 | Msa1002750:intron | 25.0% |
!! | AATCTTATTTGAGGTAATGT+GGG | + | chr6_4:88564966-88564985 | None:intergenic | 25.0% |
!! | TAATCTTATTTGAGGTAATG+TGG | + | chr6_4:88564967-88564986 | None:intergenic | 25.0% |
!! | TGAAAAGGTAATCTTATTTG+AGG | + | chr6_4:88564975-88564994 | None:intergenic | 25.0% |
!! | CAAATAAGATTACCTTTTCA+TGG | - | chr6_4:88564975-88564994 | Msa1002750:intron | 25.0% |
! | AATAGAATTCTTCCATGAAA+AGG | + | chr6_4:88564990-88565009 | None:intergenic | 25.0% |
! | TATGAATTGAATCATTTGAG+TGG | - | chr6_4:88565153-88565172 | Msa1002750:intron | 25.0% |
!!! | TGTACTGACTTTTTTTATGT+TGG | - | chr6_4:88565233-88565252 | Msa1002750:intron | 25.0% |
!! | AATACAAGAGTGTATTACAT+AGG | - | chr6_4:88565286-88565305 | Msa1002750:intron | 25.0% |
!! | ATACAAGAGTGTATTACATA+GGG | - | chr6_4:88565287-88565306 | Msa1002750:intron | 25.0% |
! | ATTAGATATTGAAGTGATCA+AGG | - | chr6_4:88565565-88565584 | Msa1002750:exon | 25.0% |
TGAGAAAGGTTATCTTCATA+AGG | - | chr6_4:88562301-88562320 | Msa1002750:CDS | 30.0% | |
! | TGAACAATATGGATTTTTCC+AGG | - | chr6_4:88562481-88562500 | Msa1002750:CDS | 30.0% |
TGTTTAAACTGTAATGTCTG+AGG | - | chr6_4:88562535-88562554 | Msa1002750:intron | 30.0% | |
ATCAAATACTATATCCCTTG+TGG | - | chr6_4:88562618-88562637 | Msa1002750:intron | 30.0% | |
ACACACACATTCAATTACAT+CGG | - | chr6_4:88562676-88562695 | Msa1002750:intron | 30.0% | |
TGTCTTTATGTCGTATAATG+TGG | - | chr6_4:88562813-88562832 | Msa1002750:intron | 30.0% | |
GTCTTTATGTCGTATAATGT+GGG | - | chr6_4:88562814-88562833 | Msa1002750:intron | 30.0% | |
AATATAGCTCAACATGCATT+AGG | + | chr6_4:88563017-88563036 | None:intergenic | 30.0% | |
GAGAATGAATGTTATTGTGT+TGG | - | chr6_4:88563363-88563382 | Msa1002750:intron | 30.0% | |
!! | CTTGTTTTTCCATGAAACTT+AGG | - | chr6_4:88564033-88564052 | Msa1002750:intron | 30.0% |
CATGTTCAAGACAAATTTGT+AGG | - | chr6_4:88564057-88564076 | Msa1002750:intron | 30.0% | |
! | TAGGTAAATACACTTGCTAA+TGG | - | chr6_4:88564076-88564095 | Msa1002750:intron | 30.0% |
ACTTGCCTAAAAAAAGACTA+TGG | + | chr6_4:88564192-88564211 | None:intergenic | 30.0% | |
! | GGACATCAATTAACAGTTTT+TGG | + | chr6_4:88564305-88564324 | None:intergenic | 30.0% |
!! | TATTTTAAACAGAGAAGTGG+TGG | - | chr6_4:88564419-88564438 | Msa1002750:intron | 30.0% |
TAAAATTGGTTACCAACATC+TGG | + | chr6_4:88564596-88564615 | None:intergenic | 30.0% | |
TAAGCCATTTGTCTTGATAT+TGG | + | chr6_4:88564721-88564740 | None:intergenic | 30.0% | |
!! | ATATTGACAACGAAAGCATT+GGG | + | chr6_4:88564758-88564777 | None:intergenic | 30.0% |
! | AATATTGACAACGAAAGCAT+TGG | + | chr6_4:88564759-88564778 | None:intergenic | 30.0% |
AATGCTTTCGTTGTCAATAT+TGG | - | chr6_4:88564758-88564777 | Msa1002750:intron | 30.0% | |
! | CAATATTGGTGATCATTTAG+AGG | - | chr6_4:88564772-88564791 | Msa1002750:intron | 30.0% |
TGTTACGTGCAAATGATATT+TGG | - | chr6_4:88565060-88565079 | Msa1002750:intron | 30.0% | |
!!! | ACTGACTTTTTTTATGTTGG+TGG | - | chr6_4:88565236-88565255 | Msa1002750:intron | 30.0% |
! | TTGTCTTCATCAATGAGTTT+TGG | + | chr6_4:88565393-88565412 | None:intergenic | 30.0% |
! | ATGTAAATTTTCTGGACTCT+AGG | + | chr6_4:88565494-88565513 | None:intergenic | 30.0% |
! | GTGAAGCATTTGTATGAGAA+AGG | - | chr6_4:88562287-88562306 | Msa1002750:CDS | 35.0% |
GCTGGAAACATATACTTCTT+TGG | + | chr6_4:88562329-88562348 | None:intergenic | 35.0% | |
GAAGTATATGTTTCCAGCTT+CGG | - | chr6_4:88562331-88562350 | Msa1002750:CDS | 35.0% | |
GAATCATCCATACTCTTTGT+GGG | + | chr6_4:88562362-88562381 | None:intergenic | 35.0% | |
TGAATCATCCATACTCTTTG+TGG | + | chr6_4:88562363-88562382 | None:intergenic | 35.0% | |
GGATGATTCAAATGTTGCTA+AGG | - | chr6_4:88562373-88562392 | Msa1002750:CDS | 35.0% | |
CTGATCTTATTGGTCCAAAT+AGG | - | chr6_4:88562426-88562445 | Msa1002750:CDS | 35.0% | |
TCCATATTGTTCACAAGCAT+TGG | + | chr6_4:88562474-88562493 | None:intergenic | 35.0% | |
! | CAATATGGATTTTTCCAGGT+AGG | - | chr6_4:88562485-88562504 | Msa1002750:CDS | 35.0% |
! | GATTTTTCCAGGTAGGAAAT+TGG | - | chr6_4:88562492-88562511 | Msa1002750:CDS | 35.0% |
TTGTTTACCAATTTCCTACC+TGG | + | chr6_4:88562502-88562521 | None:intergenic | 35.0% | |
TACTATATCCCTTGTGGATT+TGG | - | chr6_4:88562624-88562643 | Msa1002750:intron | 35.0% | |
AAGATTCTTCGATCTTCCAT+TGG | - | chr6_4:88563452-88563471 | Msa1002750:intron | 35.0% | |
!! | GTCTTTTGTTTGACTGAAAC+TGG | + | chr6_4:88563532-88563551 | None:intergenic | 35.0% |
TTTGTAATCCTTTGCCTGAT+TGG | - | chr6_4:88563586-88563605 | Msa1002750:intron | 35.0% | |
ACACTTACTGAAAGTCCAAT+GGG | + | chr6_4:88563620-88563639 | None:intergenic | 35.0% | |
AACACTTACTGAAAGTCCAA+TGG | + | chr6_4:88563621-88563640 | None:intergenic | 35.0% | |
TGAACATGACCTAAGTTTCA+TGG | + | chr6_4:88564045-88564064 | None:intergenic | 35.0% | |
! | TTAGTTCTTGTATGATGGTG+TGG | - | chr6_4:88564116-88564135 | Msa1002750:intron | 35.0% |
TGCCTAAAAAAAGACTATGG+CGG | + | chr6_4:88564189-88564208 | None:intergenic | 35.0% | |
AAGCCATCCTAGAAAGTTTA+GGG | - | chr6_4:88564487-88564506 | Msa1002750:intron | 35.0% | |
! | AATCCCTAAACTTTCTAGGA+TGG | + | chr6_4:88564493-88564512 | None:intergenic | 35.0% |
CCATAATCCCTAAACTTTCT+AGG | + | chr6_4:88564497-88564516 | None:intergenic | 35.0% | |
CCTAGAAAGTTTAGGGATTA+TGG | - | chr6_4:88564494-88564513 | Msa1002750:intron | 35.0% | |
!! | TCATCAATGAGTTTTGGTGA+CGG | + | chr6_4:88565387-88565406 | None:intergenic | 35.0% |
! | CTTTTTCTTGGTTTCTCTTG+TGG | + | chr6_4:88565466-88565485 | None:intergenic | 35.0% |
CACAAGAGAAACCAAGAAAA+AGG | - | chr6_4:88565464-88565483 | Msa1002750:intron | 35.0% | |
!! | CTCTAGGAAATCCTTTTTCT+TGG | + | chr6_4:88565478-88565497 | None:intergenic | 35.0% |
TCATCATTCATTGCCATTGC+AGG | + | chr6_4:88562221-88562240 | None:intergenic | 40.0% | |
TCAAGAGCTTGTAGCCTATT+TGG | + | chr6_4:88562443-88562462 | None:intergenic | 40.0% | |
GCCAATGCTTGTGAACAATA+TGG | - | chr6_4:88562470-88562489 | Msa1002750:CDS | 40.0% | |
CACACAATCCAAATCCACAA+GGG | + | chr6_4:88562635-88562654 | None:intergenic | 40.0% | |
ACACACAATCCAAATCCACA+AGG | + | chr6_4:88562636-88562655 | None:intergenic | 40.0% | |
ATCAATGTAGCGACTGATTG+AGG | - | chr6_4:88562759-88562778 | Msa1002750:intron | 40.0% | |
!! | AGGAGCATCATAGATGTTGT+AGG | - | chr6_4:88563429-88563448 | Msa1002750:intron | 40.0% |
ATTCTTCGATCTTCCATTGG+AGG | - | chr6_4:88563455-88563474 | Msa1002750:intron | 40.0% | |
CAAAAGACTCAGTGTTCTGT+TGG | - | chr6_4:88563544-88563563 | Msa1002750:intron | 40.0% | |
CACTTACTGAAAGTCCAATG+GGG | + | chr6_4:88563619-88563638 | None:intergenic | 40.0% | |
AATTCATCAATGGGTCCCAT+TGG | - | chr6_4:88563718-88563737 | Msa1002750:intron | 40.0% | |
ATTCATCAATGGGTCCCATT+GGG | - | chr6_4:88563719-88563738 | Msa1002750:intron | 40.0% | |
ACTATAAGACAGACCCCAAT+GGG | + | chr6_4:88563736-88563755 | None:intergenic | 40.0% | |
TACTATAAGACAGACCCCAA+TGG | + | chr6_4:88563737-88563756 | None:intergenic | 40.0% | |
AACGTATAGTGTCACATGTC+TGG | + | chr6_4:88563983-88564002 | None:intergenic | 40.0% | |
! | TTTGGTTTCTTCTGCATAGC+TGG | + | chr6_4:88564445-88564464 | None:intergenic | 40.0% |
GAAGCCATCCTAGAAAGTTT+AGG | - | chr6_4:88564486-88564505 | Msa1002750:intron | 40.0% | |
!! | ACAACGAAAGCATTGGGAAT+AGG | + | chr6_4:88564752-88564771 | None:intergenic | 40.0% |
ACTCATACGGGTTTAGTAGA+AGG | - | chr6_4:88564876-88564895 | Msa1002750:intron | 40.0% | |
GAGTGTATTACATAGGGTTC+TGG | - | chr6_4:88565293-88565312 | Msa1002750:CDS | 40.0% | |
! | AGACAATCCAAAGCGTTACA+TGG | - | chr6_4:88565407-88565426 | Msa1002750:CDS | 40.0% |
GGAAAGACCCACAAAGAGTA+TGG | - | chr6_4:88562352-88562371 | Msa1002750:CDS | 45.0% | |
CAATAATACCGAGCGTGAAG+AGG | + | chr6_4:88563141-88563160 | None:intergenic | 45.0% | |
GCTGAATCGATAGACTCTGA+TGG | - | chr6_4:88563191-88563210 | Msa1002750:intron | 45.0% | |
! | TACTTAGCTCTCTCCTCCAA+TGG | + | chr6_4:88563471-88563490 | None:intergenic | 45.0% |
ATGAGAGCAGCTGTGAGATA+TGG | - | chr6_4:88563504-88563523 | Msa1002750:intron | 45.0% | |
TGAGAGCAGCTGTGAGATAT+GGG | - | chr6_4:88563505-88563524 | Msa1002750:intron | 45.0% | |
AAGACTCAGTGTTCTGTTGG+AGG | - | chr6_4:88563547-88563566 | Msa1002750:intron | 45.0% | |
AGACTCAGTGTTCTGTTGGA+GGG | - | chr6_4:88563548-88563567 | Msa1002750:intron | 45.0% | |
TTACTGAAAGTCCAATGGGG+AGG | + | chr6_4:88563616-88563635 | None:intergenic | 45.0% | |
TTCATCAATGGGTCCCATTG+GGG | - | chr6_4:88563720-88563739 | Msa1002750:intron | 45.0% | |
!!! | CGCCGCCATAGTCTTTTTTT+AGG | - | chr6_4:88564184-88564203 | Msa1002750:CDS | 45.0% |
TATGGAAGCCAACCAAGAAG+AGG | - | chr6_4:88564512-88564531 | Msa1002750:intron | 45.0% | |
TTTCTTTGGCCTCCTCTTCT+TGG | + | chr6_4:88564527-88564546 | None:intergenic | 45.0% | |
ATGCACCCTCACTCTGATTA+TGG | - | chr6_4:88564650-88564669 | Msa1002750:intron | 45.0% | |
GGAAGCCATAATCAGAGTGA+GGG | + | chr6_4:88564658-88564677 | None:intergenic | 45.0% | |
AGGAAGCCATAATCAGAGTG+AGG | + | chr6_4:88564659-88564678 | None:intergenic | 45.0% | |
TCTCCTCCAAGATGAAGTAG+AGG | - | chr6_4:88564685-88564704 | Msa1002750:intron | 45.0% | |
CTCCTCCAAGATGAAGTAGA+GGG | - | chr6_4:88564686-88564705 | Msa1002750:intron | 45.0% | |
AACCCTCTACTTCATCTTGG+AGG | + | chr6_4:88564691-88564710 | None:intergenic | 45.0% | |
GCAAACCCTCTACTTCATCT+TGG | + | chr6_4:88564694-88564713 | None:intergenic | 45.0% | |
! | AGCTAAGAGCAGAGTATCAG+TGG | - | chr6_4:88565323-88565342 | Msa1002750:CDS | 45.0% |
TCACAGTGCAGTCAAAAGGA+AGG | + | chr6_4:88565362-88565381 | None:intergenic | 45.0% | |
TCTGTGTCCATGTAACGCTT+TGG | + | chr6_4:88565417-88565436 | None:intergenic | 45.0% | |
GTTACGCATGTCTCCTGCAA+TGG | - | chr6_4:88562205-88562224 | Msa1002750:three_prime_UTR | 50.0% | |
TTTGTGGGTCTTTCCGAAGC+TGG | + | chr6_4:88562347-88562366 | None:intergenic | 50.0% | |
TCGATACACCTCTTCACGCT+CGG | - | chr6_4:88563130-88563149 | Msa1002750:intron | 50.0% | |
TTTGGCCTCCTCTTCTTGGT+TGG | + | chr6_4:88564523-88564542 | None:intergenic | 50.0% | |
!! | CAGGGCATGGTGGGTAAAAT+TGG | + | chr6_4:88564610-88564629 | None:intergenic | 50.0% |
! | CAAGGGTTAGGTCTGGTTCA+GGG | + | chr6_4:88564628-88564647 | None:intergenic | 50.0% |
TGCATTCCAAGGGTTAGGTC+TGG | + | chr6_4:88564635-88564654 | None:intergenic | 50.0% | |
! | AGAGTGAGGGTGCATTCCAA+GGG | + | chr6_4:88564645-88564664 | None:intergenic | 50.0% |
! | CATCTTGGAGGAGAAGTGTG+AGG | + | chr6_4:88564679-88564698 | None:intergenic | 50.0% |
GGTCTCACAGTGCAGTCAAA+AGG | + | chr6_4:88565366-88565385 | None:intergenic | 50.0% | |
TGAAAGTCCAATGGGGAGGC+AGG | + | chr6_4:88563612-88563631 | None:intergenic | 55.0% | |
GGAAGCCAACCAAGAAGAGG+AGG | - | chr6_4:88564515-88564534 | Msa1002750:intron | 55.0% | |
GGACAATGGGAGCCAGATGT+TGG | - | chr6_4:88564581-88564600 | Msa1002750:intron | 55.0% | |
! | GTTAGGTCTGGTTCAGGGCA+TGG | + | chr6_4:88564623-88564642 | None:intergenic | 55.0% |
! | CCAAGGGTTAGGTCTGGTTC+AGG | + | chr6_4:88564629-88564648 | None:intergenic | 55.0% |
CCTGAACCAGACCTAACCCT+TGG | - | chr6_4:88564626-88564645 | Msa1002750:intron | 55.0% | |
! | GAGGGTGCATTCCAAGGGTT+AGG | + | chr6_4:88564640-88564659 | None:intergenic | 55.0% |
! | CAGAGTGAGGGTGCATTCCA+AGG | + | chr6_4:88564646-88564665 | None:intergenic | 55.0% |
GAGGCAGGCCAATCAGGCAA+AGG | + | chr6_4:88563597-88563616 | None:intergenic | 60.0% | |
AATGGGGAGGCAGGCCAATC+AGG | + | chr6_4:88563603-88563622 | None:intergenic | 60.0% | |
!! | TGATTGGCCTGCCTCCCCAT+TGG | - | chr6_4:88563602-88563621 | Msa1002750:intron | 60.0% |
! | GGTCTGGTTCAGGGCATGGT+GGG | + | chr6_4:88564619-88564638 | None:intergenic | 60.0% |
! | AGGTCTGGTTCAGGGCATGG+TGG | + | chr6_4:88564620-88564639 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 88562205 | 88565588 | 88562205 | ID=Msa1002750;Name=Msa1002750 |
chr6_4 | mRNA | 88562205 | 88565588 | 88562205 | ID=Msa1002750-mRNA-1;Parent=Msa1002750;Name=Msa1002750-mRNA-1;_AED=0.21;_eAED=0.21;_QI=7|0.5|0.4|1|0.25|0.4|5|67|249 |
chr6_4 | exon | 88562205 | 88562523 | 88562205 | ID=Msa1002750-mRNA-1:exon:17319;Parent=Msa1002750-mRNA-1 |
chr6_4 | exon | 88563356 | 88563362 | 88563356 | ID=Msa1002750-mRNA-1:exon:17318;Parent=Msa1002750-mRNA-1 |
chr6_4 | exon | 88564162 | 88564397 | 88564162 | ID=Msa1002750-mRNA-1:exon:17317;Parent=Msa1002750-mRNA-1 |
chr6_4 | exon | 88565291 | 88565470 | 88565291 | ID=Msa1002750-mRNA-1:exon:17316;Parent=Msa1002750-mRNA-1 |
chr6_4 | exon | 88565507 | 88565588 | 88565507 | ID=Msa1002750-mRNA-1:exon:17315;Parent=Msa1002750-mRNA-1 |
chr6_4 | five_prime_UTR | 88565582 | 88565588 | 88565582 | ID=Msa1002750-mRNA-1:five_prime_utr;Parent=Msa1002750-mRNA-1 |
chr6_4 | CDS | 88565507 | 88565581 | 88565507 | ID=Msa1002750-mRNA-1:cds;Parent=Msa1002750-mRNA-1 |
chr6_4 | CDS | 88565291 | 88565470 | 88565291 | ID=Msa1002750-mRNA-1:cds;Parent=Msa1002750-mRNA-1 |
chr6_4 | CDS | 88564162 | 88564397 | 88564162 | ID=Msa1002750-mRNA-1:cds;Parent=Msa1002750-mRNA-1 |
chr6_4 | CDS | 88563356 | 88563362 | 88563356 | ID=Msa1002750-mRNA-1:cds;Parent=Msa1002750-mRNA-1 |
chr6_4 | CDS | 88562272 | 88562523 | 88562272 | ID=Msa1002750-mRNA-1:cds;Parent=Msa1002750-mRNA-1 |
chr6_4 | three_prime_UTR | 88562205 | 88562271 | 88562205 | ID=Msa1002750-mRNA-1:three_prime_utr;Parent=Msa1002750-mRNA-1 |
Gene Sequence |
Protein sequence |