AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1317740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317740 MtrunA17_Chr8g0348311 94.970 338 15 2 1 336 1 338 6.62e-180 501
Msa1317740 MtrunA17_Chr7g0248691 54.971 342 113 9 1 331 1 312 1.46e-104 309
Msa1317740 MtrunA17_Chr2g0293481 39.051 274 118 7 95 324 191 459 3.02e-48 169
Msa1317740 MtrunA17_Chr1g0202461 67.544 114 34 2 130 242 237 348 1.73e-46 162
Msa1317740 MtrunA17_Chr8g0387501 40.726 248 114 8 69 310 49 269 6.37e-40 141
Msa1317740 MtrunA17_Chr7g0270051 54.310 116 39 3 133 237 24 136 5.41e-35 128
Msa1317740 MtrunA17_Chr2g0284321 57.732 97 34 2 127 217 4 99 1.56e-32 120
Msa1317740 MtrunA17_Chr8g0379461 53.608 97 32 3 134 218 46 141 1.29e-28 110
Msa1317740 MtrunA17_Chr5g0401821 59.036 83 29 1 133 210 174 256 4.95e-28 110
Msa1317740 MtrunA17_Chr2g0319961 55.682 88 33 1 132 213 53 140 1.01e-27 108
Msa1317740 MtrunA17_Chr4g0071521 60.241 83 28 1 133 210 220 302 4.90e-27 108
Msa1317740 MtrunA17_Chr2g0289181 50.549 91 42 2 143 232 4 92 1.21e-26 105
Msa1317740 MtrunA17_Chr1g0147881 57.317 82 30 1 134 210 238 319 1.85e-26 107
Msa1317740 MtrunA17_Chr4g0053281 58.537 82 29 2 134 210 242 323 1.44e-25 104
Msa1317740 MtrunA17_Chr1g0184691 66.667 57 19 0 154 210 294 350 6.42e-23 97.8
Msa1317740 MtrunA17_Chr7g0228941 58.333 60 25 0 151 210 50 109 3.98e-22 90.1
Msa1317740 MtrunA17_Chr3g0139021 45.055 91 44 2 134 218 290 380 5.31e-21 92.8
Msa1317740 MtrunA17_Chr1g0194481 50.667 75 35 2 154 227 159 232 1.67e-20 90.5
Msa1317740 MtrunA17_Chr4g0051881 56.522 69 26 2 154 222 179 243 7.16e-20 89.0
Msa1317740 MtrunA17_Chr7g0218081 40.741 108 62 2 130 236 386 492 1.17e-19 89.7
Msa1317740 MtrunA17_Chr7g0218081 45.714 70 34 3 149 216 224 291 1.87e-11 65.1
Msa1317740 MtrunA17_Chr7g0270191 47.191 89 43 2 154 239 146 233 4.91e-19 85.9
Msa1317740 MtrunA17_Chr7g0270831 49.315 73 37 0 151 223 214 286 1.19e-18 86.3
Msa1317740 MtrunA17_Chr4g0051181 42.045 88 48 1 127 214 220 304 3.11e-18 85.5
Msa1317740 MtrunA17_Chr5g0443131 58.333 60 24 1 154 213 158 216 3.29e-18 84.0
Msa1317740 MtrunA17_Chr7g0238921 34.545 165 96 4 137 292 106 267 4.87e-18 83.6
Msa1317740 MtrunA17_Chr4g0075201 53.968 63 29 0 151 213 265 327 5.74e-18 84.7
Msa1317740 MtrunA17_Chr5g0418191 43.137 102 40 4 129 213 279 379 6.66e-18 84.3
Msa1317740 MtrunA17_Chr5g0418191 35.938 128 67 7 92 216 99 214 8.41e-12 65.9
Msa1317740 MtrunA17_Chr4g0001361 45.946 74 40 0 151 224 160 233 2.00e-17 81.6
Msa1317740 MtrunA17_Chr5g0418781 57.895 57 23 1 154 210 125 180 2.29e-17 80.9
Msa1317740 MtrunA17_Chr2g0288871 50.794 63 31 0 151 213 303 365 2.37e-17 82.8
Msa1317740 MtrunA17_Chr2g0294231 53.333 60 27 1 154 213 204 262 2.88e-17 82.0
Msa1317740 MtrunA17_Chr3g0099641 45.205 73 40 0 151 223 249 321 3.90e-17 82.0
Msa1317740 MtrunA17_Chr7g0263531 52.941 68 30 2 146 213 355 420 5.32e-17 81.6
Msa1317740 MtrunA17_Chr7g0263531 46.053 76 39 2 148 223 184 257 2.09e-14 73.9
Msa1317740 MtrunA17_Chr4g0042831 50.794 63 30 1 151 213 276 337 7.78e-17 80.9
Msa1317740 MtrunA17_Chr4g0042831 37.500 112 50 3 146 257 138 229 2.14e-13 70.5
Msa1317740 MtrunA17_Chr2g0333851 40.244 82 47 1 151 230 167 248 1.09e-16 79.7
Msa1317740 MtrunA17_Chr2g0302391 38.679 106 60 1 118 223 181 281 1.42e-16 80.1
Msa1317740 MtrunA17_Chr3g0101131 39.604 101 47 3 131 218 380 479 1.72e-16 80.5
Msa1317740 MtrunA17_Chr3g0101131 34.454 119 76 2 146 264 236 352 3.39e-12 67.4
Msa1317740 MtrunA17_Chr3g0126391 36.667 120 69 3 154 271 134 248 2.25e-16 79.0
Msa1317740 MtrunA17_Chr1g0150801 53.226 62 28 1 150 211 99 159 2.28e-16 75.5
Msa1317740 MtrunA17_Chr4g0025051 45.333 75 41 0 149 223 331 405 2.37e-16 80.1
Msa1317740 MtrunA17_Chr7g0216891 39.560 91 52 1 133 223 202 289 2.55e-16 79.7
Msa1317740 MtrunA17_Chr7g0275531 35.965 114 63 3 100 209 69 176 2.99e-16 78.6
Msa1317740 MtrunA17_Chr2g0322391 49.206 63 32 0 151 213 347 409 3.75e-16 79.3
Msa1317740 MtrunA17_Chr4g0068541 49.180 61 30 1 154 214 209 268 4.47e-16 78.6
Msa1317740 MtrunA17_Chr5g0445311 49.231 65 32 1 154 218 365 428 6.02e-16 78.6
Msa1317740 MtrunA17_Chr5g0445311 32.215 149 81 7 152 290 199 337 4.79e-11 63.9
Msa1317740 MtrunA17_Chr8g0387981 41.860 86 42 2 132 209 105 190 8.51e-16 77.4
Msa1317740 MtrunA17_Chr4g0025061 41.176 85 46 2 142 223 347 430 1.32e-15 77.8
Msa1317740 MtrunA17_Chr7g0249311 38.462 91 51 3 129 218 370 456 1.45e-15 77.8
Msa1317740 MtrunA17_Chr7g0249311 44.000 75 40 2 139 213 165 237 5.28e-13 70.1
Msa1317740 MtrunA17_Chr4g0074001 38.318 107 59 3 113 217 323 424 1.75e-15 77.4
Msa1317740 MtrunA17_Chr7g0224801 47.541 61 31 1 151 211 91 150 2.04e-15 73.2
Msa1317740 MtrunA17_Chr3g0129321 45.455 66 35 1 150 215 115 179 2.06e-15 73.9
Msa1317740 MtrunA17_Chr1g0189391 45.833 96 41 6 140 225 83 177 2.75e-15 75.9
Msa1317740 MtrunA17_Chr8g0383251 48.438 64 32 1 150 213 105 167 3.12e-15 73.2
Msa1317740 MtrunA17_Chr6g0485431 47.887 71 34 3 144 213 146 214 4.05e-15 75.5
Msa1317740 MtrunA17_Chr5g0447701 49.275 69 34 1 151 219 250 317 4.23e-15 75.5
Msa1317740 MtrunA17_Chr1g0150281 47.368 57 30 0 154 210 141 197 6.29e-15 73.9
Msa1317740 MtrunA17_Chr4g0060271 50.820 61 30 0 153 213 255 315 6.37e-15 75.9
Msa1317740 MtrunA17_Chr3g0079691 38.614 101 46 3 133 218 460 559 8.29e-15 75.5
Msa1317740 MtrunA17_Chr3g0079691 45.455 88 40 4 152 238 279 359 1.19e-12 68.9
Msa1317740 MtrunA17_Chr7g0249301 42.353 85 44 3 135 216 272 354 8.44e-15 74.7
Msa1317740 MtrunA17_Chr7g0249301 40.789 76 43 2 139 214 48 121 6.66e-13 68.9
Msa1317740 MtrunA17_Chr1g0150271 47.619 63 33 0 151 213 99 161 1.10e-14 72.8
Msa1317740 MtrunA17_Chr4g0004911 49.206 63 31 1 154 216 337 398 1.12e-14 74.7
Msa1317740 MtrunA17_Chr4g0004911 44.776 67 36 1 147 213 178 243 9.21e-13 68.9
Msa1317740 MtrunA17_Chr8g0383351 52.632 57 26 1 154 210 161 216 1.19e-14 72.4
Msa1317740 MtrunA17_Chr3g0136961 32.704 159 88 4 68 210 40 195 1.22e-14 73.2
Msa1317740 MtrunA17_Chr3g0106491 46.154 78 40 2 154 231 366 441 1.47e-14 74.3
Msa1317740 MtrunA17_Chr3g0106491 46.154 65 33 2 150 214 195 257 4.34e-11 63.9
Msa1317740 MtrunA17_Chr7g0243891 41.860 86 40 2 154 230 375 459 1.49e-14 74.3
Msa1317740 MtrunA17_Chr7g0243891 37.241 145 80 6 146 285 209 347 1.59e-13 71.2
Msa1317740 MtrunA17_Chr3g0129361 52.632 57 26 1 154 210 145 200 1.84e-14 71.6
Msa1317740 MtrunA17_Chr8g0335811 40.000 95 53 4 119 210 117 210 3.87e-14 70.9
Msa1317740 MtrunA17_Chr7g0244981 44.872 78 39 2 134 209 105 180 6.83e-14 70.9
Msa1317740 MtrunA17_Chr8g0347251 33.108 148 89 4 148 285 131 278 1.91e-13 70.5
Msa1317740 MtrunA17_Chr5g0432161 36.111 108 54 2 154 247 422 528 2.54e-13 70.9
Msa1317740 MtrunA17_Chr3g0128671 39.286 84 46 2 134 215 111 191 4.44e-13 68.9
Msa1317740 MtrunA17_Chr4g0024391 41.333 75 44 0 149 223 225 299 5.96e-13 69.3
Msa1317740 MtrunA17_Chr1g0188941 47.541 61 31 1 154 214 52 111 6.40e-13 64.7
Msa1317740 MtrunA17_Chr8g0386241 36.842 76 46 2 138 212 87 161 9.51e-13 65.9
Msa1317740 MtrunA17_Chr8g0334541 42.308 78 41 2 134 209 86 161 2.19e-12 66.6
Msa1317740 MtrunA17_Chr5g0428351 50.909 55 25 1 157 209 187 241 3.90e-12 66.2
Msa1317740 MtrunA17_Chr7g0244971 39.744 78 43 2 134 209 106 181 7.13e-12 65.1
Msa1317740 MtrunA17_Chr2g0315361 42.466 73 40 1 145 215 140 212 5.64e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317740 AT4G01250.1 46.273 322 125 9 1 315 1 281 3.01e-76 236
Msa1317740 AT5G52830.1 56.863 153 51 4 132 281 143 283 3.77e-49 168
Msa1317740 AT1G30650.1 46.047 215 84 7 134 322 188 396 7.95e-44 156
Msa1317740 AT4G23550.1 43.590 234 98 7 6 231 11 218 3.92e-42 149
Msa1317740 AT2G34830.1 45.320 203 81 4 134 306 186 388 1.04e-41 150
Msa1317740 AT2G34830.2 45.320 203 81 4 134 306 195 397 1.23e-41 150
Msa1317740 AT5G45050.1 61.290 93 33 1 132 221 1156 1248 2.90e-33 130
Msa1317740 AT5G45050.2 61.290 93 33 1 132 221 1128 1220 3.33e-33 130
Msa1317740 AT5G45050.4 61.290 93 33 1 132 221 1017 1109 3.83e-33 130
Msa1317740 AT1G29280.1 50.427 117 41 3 120 225 31 141 1.56e-32 122
Msa1317740 AT3G58710.1 50.435 115 39 3 130 226 38 152 3.64e-30 116
Msa1317740 AT3G58710.2 51.304 115 37 4 130 226 38 151 2.37e-29 114
Msa1317740 AT2G23320.1 45.312 128 63 3 88 210 172 297 1.52e-26 107
Msa1317740 AT2G30590.1 54.762 84 33 1 133 211 288 371 1.10e-24 103
Msa1317740 AT4G31550.2 54.878 82 32 1 134 210 221 302 1.26e-24 102
Msa1317740 AT4G24240.1 56.627 83 31 1 133 210 256 338 1.37e-24 102
Msa1317740 AT4G31550.1 54.878 82 32 1 134 210 222 303 4.73e-24 100
Msa1317740 AT5G28650.1 55.422 83 32 1 133 210 237 319 1.17e-23 99.8
Msa1317740 AT3G04670.1 55.422 83 32 1 133 210 237 319 1.40e-23 99.8
Msa1317740 AT5G45260.1 53.488 86 37 2 141 224 1197 1281 2.05e-23 102
Msa1317740 AT2G24570.1 53.659 82 33 1 134 210 219 300 2.07e-22 96.3
Msa1317740 AT1G29860.1 56.522 69 28 2 154 221 137 204 7.86e-20 88.2
Msa1317740 AT5G46350.1 52.778 72 31 2 154 223 184 254 1.22e-19 88.6
Msa1317740 AT4G18170.1 58.065 62 25 1 154 215 173 233 1.47e-19 88.2
Msa1317740 AT3G62340.1 53.012 83 33 3 136 213 96 177 3.81e-19 86.3
Msa1317740 AT5G49520.1 58.333 60 24 1 154 213 222 280 4.40e-19 87.8
Msa1317740 AT2G04880.1 54.054 74 28 2 151 219 305 377 7.02e-19 87.8
Msa1317740 AT2G04880.1 46.667 75 33 3 149 223 107 174 1.51e-12 68.6
Msa1317740 AT2G04880.2 54.054 74 28 2 151 219 281 353 7.03e-19 87.8
Msa1317740 AT2G04880.2 46.667 75 33 3 149 223 107 174 1.66e-12 68.6
Msa1317740 AT4G04450.2 41.176 102 55 2 122 223 172 268 2.99e-18 85.5
Msa1317740 AT1G62300.1 53.968 63 29 0 151 213 310 372 5.24e-18 85.5
Msa1317740 AT4G04450.1 47.945 73 38 0 151 223 290 362 5.94e-18 85.1
Msa1317740 AT4G22070.4 53.968 63 29 0 151 213 295 357 6.63e-18 85.1
Msa1317740 AT4G22070.3 53.968 63 29 0 151 213 295 357 6.63e-18 85.1
Msa1317740 AT4G22070.2 53.968 63 29 0 151 213 295 357 6.63e-18 85.1
Msa1317740 AT4G22070.1 53.968 63 29 0 151 213 295 357 6.63e-18 85.1
Msa1317740 AT1G68150.1 46.053 76 41 0 153 228 235 310 1.43e-17 83.2
Msa1317740 AT1G69310.4 57.895 57 23 1 154 210 148 203 1.65e-17 82.0
Msa1317740 AT1G69310.2 57.895 57 23 1 154 210 148 203 1.65e-17 82.0
Msa1317740 AT1G69310.1 57.895 57 23 1 154 210 148 203 1.65e-17 82.0
Msa1317740 AT1G80840.1 45.070 71 39 0 154 224 147 217 3.44e-17 81.3
Msa1317740 AT2G21900.1 50.820 61 29 1 154 214 110 169 3.90e-17 79.0
Msa1317740 AT5G15130.2 42.222 90 49 1 134 223 169 255 5.10e-17 82.4
Msa1317740 AT5G15130.1 42.222 90 49 1 134 223 211 297 5.29e-17 82.4
Msa1317740 AT5G26170.1 47.297 74 35 2 137 210 100 169 6.56e-17 77.8
Msa1317740 AT4G39410.1 42.424 99 52 3 135 229 203 300 9.17e-17 80.1
Msa1317740 AT1G13960.2 50.794 63 30 1 151 213 254 315 9.76e-17 80.5
Msa1317740 AT1G13960.2 42.105 76 42 2 138 213 61 134 3.35e-13 70.1
Msa1317740 AT2G47260.1 53.333 60 27 1 154 213 175 233 1.66e-16 79.7
Msa1317740 AT2G03340.1 48.529 68 34 1 151 218 413 479 1.72e-16 80.5
Msa1317740 AT2G03340.1 33.333 135 78 3 148 272 245 377 1.13e-13 72.0
Msa1317740 AT1G13960.1 50.794 63 30 1 151 213 407 468 1.92e-16 80.5
Msa1317740 AT1G13960.1 42.105 76 42 2 138 213 214 287 2.44e-13 71.2
Msa1317740 AT4G01720.1 50.820 61 30 0 153 213 239 299 5.53e-16 79.0
Msa1317740 AT2G25000.2 50.000 60 30 0 154 213 104 163 6.89e-16 76.3
Msa1317740 AT2G25000.4 50.000 60 30 0 154 213 104 163 6.89e-16 76.3
Msa1317740 AT1G18860.1 43.750 80 42 1 134 213 223 299 1.06e-15 78.2
Msa1317740 AT2G25000.3 50.000 60 30 0 154 213 126 185 1.22e-15 75.9
Msa1317740 AT4G31800.2 48.333 60 31 0 154 213 112 171 1.24e-15 75.9
Msa1317740 AT1G69810.1 47.222 72 37 1 153 223 203 274 1.40e-15 77.4
Msa1317740 AT4G26640.5 31.098 164 98 4 55 218 121 269 1.43e-15 77.4
Msa1317740 AT4G26640.5 41.250 80 43 3 151 228 33 110 9.71e-11 62.8
Msa1317740 AT4G26640.6 31.098 164 98 4 55 218 121 269 1.43e-15 77.4
Msa1317740 AT4G26640.6 41.250 80 43 3 151 228 33 110 9.71e-11 62.8
Msa1317740 AT4G26640.4 31.098 164 98 4 55 218 121 269 1.43e-15 77.4
Msa1317740 AT4G26640.4 41.250 80 43 3 151 228 33 110 9.71e-11 62.8
Msa1317740 AT4G26640.3 31.098 164 98 4 55 218 121 269 1.43e-15 77.4
Msa1317740 AT4G26640.3 41.250 80 43 3 151 228 33 110 9.71e-11 62.8
Msa1317740 AT2G37260.1 48.837 86 34 4 132 210 323 405 1.54e-15 77.4
Msa1317740 AT2G37260.1 42.424 99 48 4 148 241 160 254 6.39e-11 63.5
Msa1317740 AT2G37260.3 48.837 86 34 4 132 210 243 325 1.67e-15 77.0
Msa1317740 AT2G37260.3 42.424 99 48 4 148 241 80 174 8.78e-11 62.8
Msa1317740 AT4G31800.1 48.333 60 31 0 154 213 177 236 1.78e-15 76.3
Msa1317740 AT2G37260.2 48.837 86 34 4 132 210 241 323 1.79e-15 76.6
Msa1317740 AT2G37260.2 42.424 99 48 4 148 241 78 172 9.54e-11 62.8
Msa1317740 AT4G26640.2 40.426 94 55 1 125 218 353 445 1.93e-15 77.4
Msa1317740 AT2G25000.1 50.000 60 30 0 154 213 147 206 1.98e-15 75.9
Msa1317740 AT4G26640.7 40.426 94 55 1 125 218 313 405 2.01e-15 77.4
Msa1317740 AT1G69810.2 47.222 72 37 1 153 223 145 216 2.08e-15 76.3
Msa1317740 AT4G26640.1 40.426 94 55 1 125 218 281 373 2.22e-15 77.4
Msa1317740 AT1G64000.1 44.444 72 39 1 154 225 115 185 2.42e-15 73.9
Msa1317740 AT2G40740.1 44.681 94 43 3 125 209 138 231 2.75e-15 75.5
Msa1317740 AT4G26440.1 47.619 84 38 3 154 232 373 455 3.12e-15 77.0
Msa1317740 AT4G26440.1 46.575 73 35 3 152 222 177 247 5.30e-13 70.1
Msa1317740 AT2G40740.3 44.681 94 43 3 125 209 147 240 3.27e-15 75.5
Msa1317740 AT5G07100.2 50.000 66 32 1 151 216 139 203 3.36e-15 73.9
Msa1317740 AT5G07100.2 43.939 66 36 1 148 213 19 83 5.60e-11 62.0
Msa1317740 AT5G07100.4 50.000 66 32 1 151 216 139 203 3.36e-15 73.9
Msa1317740 AT5G07100.4 43.939 66 36 1 148 213 19 83 5.60e-11 62.0
Msa1317740 AT5G07100.5 50.000 66 32 1 151 216 139 203 3.36e-15 73.9
Msa1317740 AT5G07100.5 43.939 66 36 1 148 213 19 83 5.60e-11 62.0
Msa1317740 AT5G07100.3 50.000 66 32 1 151 216 139 203 3.36e-15 73.9
Msa1317740 AT5G07100.3 43.939 66 36 1 148 213 19 83 5.60e-11 62.0
Msa1317740 AT5G13080.1 49.180 61 30 1 151 211 65 124 3.53e-15 72.4
Msa1317740 AT4G11070.2 44.706 85 39 2 133 209 83 167 3.59e-15 75.1
Msa1317740 AT1G66600.1 30.172 232 107 10 87 300 33 227 4.43e-15 74.3
Msa1317740 AT4G11070.1 44.706 85 39 2 133 209 115 199 4.58e-15 75.1
Msa1317740 AT2G38470.1 39.423 104 52 3 154 247 363 465 5.20e-15 76.3
Msa1317740 AT5G07100.1 50.000 66 32 1 151 216 232 296 5.54e-15 75.1
Msa1317740 AT5G07100.1 42.647 68 38 1 146 213 110 176 7.72e-11 62.8
Msa1317740 AT1G80590.1 29.341 167 107 3 117 272 40 206 6.45e-15 73.6
Msa1317740 AT4G30935.1 34.532 139 69 5 151 270 329 464 8.46e-15 75.5
Msa1317740 AT3G01080.2 42.105 95 42 4 131 213 310 403 9.08e-15 75.5
Msa1317740 AT3G01080.2 46.575 73 37 2 149 221 201 271 1.13e-13 72.0
Msa1317740 AT3G01080.1 42.105 95 42 4 131 213 272 365 1.21e-14 74.7
Msa1317740 AT3G01080.1 46.575 73 37 2 149 221 163 233 1.04e-13 72.0
Msa1317740 AT3G01970.1 46.667 60 31 1 151 210 63 121 1.71e-14 70.5
Msa1317740 AT5G41570.1 44.444 72 39 1 154 225 99 169 1.75e-14 71.2
Msa1317740 AT2G40750.1 42.500 80 41 2 135 212 137 213 2.39e-14 73.6
Msa1317740 AT2G44745.1 43.590 78 41 3 135 210 125 201 2.56e-14 71.6
Msa1317740 AT5G56270.1 49.206 63 31 1 154 216 488 549 3.87e-14 73.9
Msa1317740 AT5G56270.1 45.588 68 33 3 154 219 274 339 2.59e-11 65.1
Msa1317740 AT1G66560.1 28.837 215 118 7 87 290 33 223 4.44e-14 71.6
Msa1317740 AT4G23810.1 42.105 95 46 3 123 209 123 216 4.79e-14 72.4
Msa1317740 AT2G46130.1 50.847 59 28 1 154 212 31 88 5.61e-14 67.8
Msa1317740 AT5G43290.1 48.052 77 37 2 151 227 112 185 6.06e-14 71.6
Msa1317740 AT3G01080.3 46.575 73 37 2 149 221 201 271 7.65e-14 71.6
Msa1317740 AT1G55600.1 45.902 61 32 1 153 213 307 366 8.60e-14 72.4
Msa1317740 AT3G56400.1 41.026 78 41 3 134 209 104 178 1.05e-13 70.9
Msa1317740 AT2G30250.1 50.820 61 29 1 154 214 329 388 1.06e-13 72.0
Msa1317740 AT2G46400.1 53.704 54 23 1 158 209 109 162 2.47e-13 70.1
Msa1317740 AT5G64810.1 49.153 59 29 1 154 212 111 168 3.88e-13 67.8
Msa1317740 AT1G66550.1 35.507 138 68 5 87 208 33 165 4.44e-13 68.6
Msa1317740 AT1G69310.3 52.632 57 22 2 154 210 148 199 7.90e-13 68.2
Msa1317740 AT5G24110.1 50.000 58 27 1 154 209 114 171 9.99e-13 68.2
Msa1317740 AT1G66550.2 31.792 173 85 6 87 236 33 195 8.26e-12 65.1
Msa1317740 AT5G01900.1 46.667 60 30 1 151 208 108 167 1.20e-11 64.7

Find 87 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATATGTCTCCACTAATTT+TGG 0.187343 8_4:-19268411 Msa1317740:three_prime_UTR
GACCTTGTCTTTAACGGTTA+TGG 0.227776 8_4:-19270304 Msa1317740:exon
TTAGAGGAATTGGTACATTA+TGG 0.247413 8_4:-19268297 Msa1317740:three_prime_UTR
GGTTGTATATGAGGTGATTT+TGG 0.274712 8_4:+19269970 None:intergenic
TGAATTTGAGTTATCTGATA+TGG 0.292666 8_4:-19268748 Msa1317740:CDS
GTCAGAGAGCAAAGATGATT+TGG 0.293031 8_4:-19268802 Msa1317740:CDS
TCTAATCCCTATTCTCTATA+AGG 0.299926 8_4:+19268358 None:intergenic
CTTTCAGACCTTGTCTTTAA+CGG 0.308252 8_4:-19270310 Msa1317740:five_prime_UTR
TTATTAACCAGAAGCTGTTT+TGG 0.328825 8_4:+19269949 None:intergenic
TTTGTACATTACCAAAAGTA+TGG 0.353893 8_4:+19268158 None:intergenic
GGTTGTTGAGGTGGTGGAGG+AGG 0.354712 8_4:+19270218 None:intergenic
GGGTCGTGTCGGTGCTTTAT+AGG 0.360769 8_4:+19268580 None:intergenic
TAACGGTTATGGAGGTAGAT+TGG 0.366756 8_4:-19270293 Msa1317740:exon
GTGATTGCTAGCCATACTTT+TGG 0.369155 8_4:-19268169 Msa1317740:three_prime_UTR
TCATCTGGTGGTGACTGTTT+TGG 0.371167 8_4:-19268660 Msa1317740:CDS
TATACAACCAAAACAGCTTC+TGG 0.372026 8_4:-19269956 Msa1317740:CDS
GGTGGAGGAGGAGGAAGAGG+AGG 0.375401 8_4:+19270230 None:intergenic
ACTCACAGAAATTCTCTTGC+TGG 0.378623 8_4:-19268960 Msa1317740:CDS
GGTGGTGGAGGAGGAGGAAG+AGG 0.383063 8_4:+19270227 None:intergenic
ATATGGGCATGGAGGAAATA+TGG 0.384293 8_4:-19269575 Msa1317740:CDS
GGAAGAGGAGGAGGTGAGGT+TGG 0.390083 8_4:+19270242 None:intergenic
TGTTGAGGTGGTGGAGGAGG+AGG 0.393969 8_4:+19270221 None:intergenic
GGATATGGTGAGCCTTTGAT+TGG 0.398953 8_4:+19269545 None:intergenic
AACGGTTATGGAGGTAGATT+GGG 0.399198 8_4:-19270292 Msa1317740:exon
GGTGGTTGTTGAGGTGGTGG+AGG 0.404929 8_4:+19270215 None:intergenic
GGAGGAGGAGGAAGAGGAGG+AGG 0.406513 8_4:+19270233 None:intergenic
ACTTGACTTGTTTGTTCTGT+AGG 0.409675 8_4:+19270129 None:intergenic
AGAAGCTCTCATCAGACATA+TGG 0.410207 8_4:-19269592 Msa1317740:CDS
GTAACAGATGATTTCTTTGA+AGG 0.418155 8_4:-19268723 Msa1317740:CDS
TTTATAGGTGGCAACATCAT+TGG 0.419475 8_4:+19268595 None:intergenic
AGAGCAATACTAGCAGCAAA+AGG 0.441287 8_4:+19268633 None:intergenic
TCAGTGTCCTGTCAGACATA+AGG 0.441359 8_4:+19268559 None:intergenic
GGCTAAGGTGGTTGTTGAGG+TGG 0.445368 8_4:+19270209 None:intergenic
GAATTTCTGTGAGTTGGAGC+AGG 0.445905 8_4:+19268969 None:intergenic
AAGTTCATGCAATTCTTCAA+TGG 0.450245 8_4:+19270071 None:intergenic
TCTTCAGCAGTGTCAGTTTG+TGG 0.454123 8_4:+19268912 None:intergenic
GCAAGAGAATTTCTGTGAGT+TGG 0.458253 8_4:+19268963 None:intergenic
GATGATGATTTGAAGAAGAA+AGG 0.460344 8_4:+19270042 None:intergenic
AGGAGGAAGAGGAGGAGGTG+AGG 0.460777 8_4:+19270238 None:intergenic
CTTGACTTGTTTGTTCTGTA+GGG 0.462771 8_4:+19270130 None:intergenic
TCAGCTACCACCAAAATTAG+TGG 0.476180 8_4:+19268401 None:intergenic
GAGAGAGATAGAGAGAAAAG+AGG 0.482478 8_4:+19270365 None:intergenic
TTACTATAAGATGTTGAAGA+AGG 0.482849 8_4:+19270174 None:intergenic
TACAGATGTAGCAGTTCAAA+AGG 0.483623 8_4:-19269074 Msa1317740:CDS
GAAGGTTTAGATGAATTGAC+AGG 0.487690 8_4:-19268705 Msa1317740:CDS
TAGGAAGATTCAGCATAAGA+AGG 0.490182 8_4:-19269633 Msa1317740:CDS
TAAGGTGGTTGTTGAGGTGG+TGG 0.491931 8_4:+19270212 None:intergenic
TTCCTCTTCAGCTTCTGATG+TGG 0.499055 8_4:+19268851 None:intergenic
GGTGGCTAAGGTGGTTGTTG+AGG 0.500842 8_4:+19270206 None:intergenic
AACTAACAATGCTATGTGAA+GGG 0.504246 8_4:-19268265 Msa1317740:three_prime_UTR
ATCAGAAGCTGAAGAGGAAG+AGG 0.515216 8_4:-19268847 Msa1317740:CDS
TATGTAACTATGAACATTGA+TGG 0.516786 8_4:+19269011 None:intergenic
GAGAAGGAAGTTGAAGAGAG+AGG 0.518420 8_4:+19270009 None:intergenic
AGTATTGCTCTTCCTGCTTG+TGG 0.519938 8_4:-19268621 Msa1317740:CDS
CAGTGTCCTGTCAGACATAA+GGG 0.527260 8_4:+19268560 None:intergenic
GAAGCTCTCATCAGACATAT+GGG 0.541248 8_4:-19269591 Msa1317740:CDS
ATCCACATCAGAAGCTGAAG+AGG 0.543617 8_4:-19268853 Msa1317740:CDS
TGTTGATGAGGTGGCTAAGG+TGG 0.549800 8_4:+19270197 None:intergenic
TAACTAACAATGCTATGTGA+AGG 0.552278 8_4:-19268266 Msa1317740:three_prime_UTR
AGGTGTTGATGAGGTGGCTA+AGG 0.558620 8_4:+19270194 None:intergenic
CTCCATAACCGTTAAAGACA+AGG 0.576458 8_4:+19270302 None:intergenic
ACACGACCCTTATGTCTGAC+AGG 0.576936 8_4:-19268566 Msa1317740:three_prime_UTR
GAGCAATACTAGCAGCAAAA+GGG 0.577414 8_4:+19268634 None:intergenic
ATTGCTCTTCCTGCTTGTGG+TGG 0.580832 8_4:-19268618 Msa1317740:CDS
GAGGAATTGGTACATTATGG+AGG 0.585375 8_4:-19268294 Msa1317740:three_prime_UTR
TCACACCAAGATCCAAAAGA+AGG 0.586020 8_4:-19269900 Msa1317740:intron
CATCATTGGCCACCACAAGC+AGG 0.589284 8_4:+19268609 None:intergenic
CTTGTCTTTAACGGTTATGG+AGG 0.592755 8_4:-19270301 Msa1317740:exon
AGAGAGATAGAGAGAAAAGA+GGG 0.593790 8_4:+19270366 None:intergenic
AATTTCTGTGAGTTGGAGCA+GGG 0.599997 8_4:+19268970 None:intergenic
ACTAACAATGCTATGTGAAG+GGG 0.600258 8_4:-19268264 Msa1317740:three_prime_UTR
GTCAGACATAAGGGTCGTGT+CGG 0.602721 8_4:+19268569 None:intergenic
AATGATGAATGATGATGATG+AGG 0.613568 8_4:-19268775 Msa1317740:CDS
GATCTACATGCTGTAGTCAG+AGG 0.619206 8_4:-19270270 Msa1317740:CDS
GTGTCAGTTTGTGGTGACAA+TGG 0.619638 8_4:+19268921 None:intergenic
TCAAAGGCTCACCATATCCA+AGG 0.623779 8_4:-19269541 Msa1317740:intron
ATGTAACTATGAACATTGAT+GGG 0.626118 8_4:+19269012 None:intergenic
ATGTTCATAGTTACATACAC+TGG 0.626605 8_4:-19269005 Msa1317740:CDS
TCGTGTCGGTGCTTTATAGG+TGG 0.629948 8_4:+19268583 None:intergenic
CAGCTAAGAAACAAGTTGAG+AGG 0.631582 8_4:-19269046 Msa1317740:CDS
TGAAGAAGGTGTTGATGAGG+TGG 0.640780 8_4:+19270188 None:intergenic
GCTATGTGTCAGTGTCGTGT+CGG 0.659359 8_4:-19268486 Msa1317740:three_prime_UTR
TCTCATCAGACATATGGGCA+TGG 0.674402 8_4:-19269586 Msa1317740:CDS
CATCAGACATATGGGCATGG+AGG 0.678030 8_4:-19269583 Msa1317740:CDS
TGTTGAAGAAGGTGTTGATG+AGG 0.693091 8_4:+19270185 None:intergenic
TGATGGTGATGAATAAGAGA+AGG 0.705900 8_4:+19269993 None:intergenic
AAAACAGTAGCATCATCTGG+TGG 0.715149 8_4:-19268672 Msa1317740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCTATATTGTATATATAA+TGG + chr8_4:19268692-19268711 None:intergenic 10.0%
!!! TCAATAAAAATCATATATTT+TGG - chr8_4:19268747-19268766 Msa1317740:CDS 10.0%
!!! AAAATCATTTTTCTTTAAAT+GGG + chr8_4:19269116-19269135 None:intergenic 10.0%
!!! TTAATTAAGTTGTTTATATA+AGG - chr8_4:19269411-19269430 Msa1317740:intron 10.0%
!! ATTCTATATTGTATATATAA+TGG + chr8_4:19268692-19268711 None:intergenic 10.0%
!!! TCAATAAAAATCATATATTT+TGG - chr8_4:19268747-19268766 Msa1317740:CDS 10.0%
!!! AAAATCATTTTTCTTTAAAT+GGG + chr8_4:19269116-19269135 None:intergenic 10.0%
!!! TTAATTAAGTTGTTTATATA+AGG - chr8_4:19269411-19269430 Msa1317740:intron 10.0%
!!! AATGACTAATTTTCTAAAAA+AGG + chr8_4:19268844-19268863 None:intergenic 15.0%
!!! AAATTTTTAAAAACTAACCT+TGG + chr8_4:19269021-19269040 None:intergenic 15.0%
!!! TAAATTTGCAAAATACTTTT+GGG + chr8_4:19269059-19269078 None:intergenic 15.0%
!!! TTAAATTTGCAAAATACTTT+TGG + chr8_4:19269060-19269079 None:intergenic 15.0%
!! TTTGCAAATTTAAAGAAAAA+TGG - chr8_4:19269067-19269086 Msa1317740:CDS 15.0%
!!! GAAAATCATTTTTCTTTAAA+TGG + chr8_4:19269117-19269136 None:intergenic 15.0%
!!! AATGACTAATTTTCTAAAAA+AGG + chr8_4:19268844-19268863 None:intergenic 15.0%
!!! AAATTTTTAAAAACTAACCT+TGG + chr8_4:19269021-19269040 None:intergenic 15.0%
!!! TAAATTTGCAAAATACTTTT+GGG + chr8_4:19269059-19269078 None:intergenic 15.0%
!!! TTAAATTTGCAAAATACTTT+TGG + chr8_4:19269060-19269079 None:intergenic 15.0%
!! TTTGCAAATTTAAAGAAAAA+TGG - chr8_4:19269067-19269086 Msa1317740:CDS 15.0%
!!! GAAAATCATTTTTCTTTAAA+TGG + chr8_4:19269117-19269136 None:intergenic 15.0%
!!! GACTTAAATTTTCCATATTT+AGG - chr8_4:19268777-19268796 Msa1317740:CDS 20.0%
!! AATTTGCATAATCCTAAATA+TGG + chr8_4:19268792-19268811 None:intergenic 20.0%
!! CATTTATTATTCATGATTTG+AGG - chr8_4:19268860-19268879 Msa1317740:CDS 20.0%
!!! AAATTTGCAAAATACTTTTG+GGG + chr8_4:19269058-19269077 None:intergenic 20.0%
!! TCAAATAAGTCGATATAAAT+AGG + chr8_4:19269164-19269183 None:intergenic 20.0%
!! ATGTTAGACATATCAATAAA+CGG - chr8_4:19269230-19269249 Msa1317740:intron 20.0%
!!! CTTATTTTCATAAGTTCTTT+AGG - chr8_4:19269260-19269279 Msa1317740:intron 20.0%
!!! TTTCTTGTTTTTGTTTTTTG+AGG - chr8_4:19270222-19270241 Msa1317740:CDS 20.0%
!!! GACTTAAATTTTCCATATTT+AGG - chr8_4:19268777-19268796 Msa1317740:CDS 20.0%
!! AATTTGCATAATCCTAAATA+TGG + chr8_4:19268792-19268811 None:intergenic 20.0%
!! CATTTATTATTCATGATTTG+AGG - chr8_4:19268860-19268879 Msa1317740:CDS 20.0%
!!! AAATTTGCAAAATACTTTTG+GGG + chr8_4:19269058-19269077 None:intergenic 20.0%
!! TCAAATAAGTCGATATAAAT+AGG + chr8_4:19269164-19269183 None:intergenic 20.0%
!! ATGTTAGACATATCAATAAA+CGG - chr8_4:19269230-19269249 Msa1317740:intron 20.0%
!!! CTTATTTTCATAAGTTCTTT+AGG - chr8_4:19269260-19269279 Msa1317740:intron 20.0%
!!! TTTCTTGTTTTTGTTTTTTG+AGG - chr8_4:19270222-19270241 Msa1317740:CDS 20.0%
! TTACTATAAGATGTTGAAGA+AGG + chr8_4:19268371-19268390 None:intergenic 25.0%
!!! ATGGAACTTTTAGTTTCAAA+GGG + chr8_4:19268455-19268474 None:intergenic 25.0%
!!! AATGGAACTTTTAGTTTCAA+AGG + chr8_4:19268456-19268475 None:intergenic 25.0%
!!! AACTCTTTTTTACCTTCTTT+TGG + chr8_4:19268657-19268676 None:intergenic 25.0%
!!! TGCATGTTTTTGCTAATTAT+AGG - chr8_4:19268890-19268909 Msa1317740:CDS 25.0%
! TTAAAAACTAACCTTGGATA+TGG + chr8_4:19269015-19269034 None:intergenic 25.0%
!! TTTTCATATGAACTGTAAGT+TGG + chr8_4:19269338-19269357 None:intergenic 25.0%
! ATGTAACTATGAACATTGAT+GGG + chr8_4:19269533-19269552 None:intergenic 25.0%
! TATGTAACTATGAACATTGA+TGG + chr8_4:19269534-19269553 None:intergenic 25.0%
!!! TTGTTTTGTAAAAGGTTGTT+GGG + chr8_4:19269661-19269680 None:intergenic 25.0%
!!! GATGAAACTTGTTTTGTAAA+AGG + chr8_4:19269669-19269688 None:intergenic 25.0%
!! TGAATTTGAGTTATCTGATA+TGG - chr8_4:19269794-19269813 Msa1317740:intron 25.0%
!!! TTTTTGTTTTTTGAGGTTAG+AGG - chr8_4:19270229-19270248 Msa1317740:CDS 25.0%
! TTTGTACATTACCAAAAGTA+TGG + chr8_4:19270387-19270406 None:intergenic 25.0%
! TTACTATAAGATGTTGAAGA+AGG + chr8_4:19268371-19268390 None:intergenic 25.0%
!!! ATGGAACTTTTAGTTTCAAA+GGG + chr8_4:19268455-19268474 None:intergenic 25.0%
!!! AATGGAACTTTTAGTTTCAA+AGG + chr8_4:19268456-19268475 None:intergenic 25.0%
!!! AACTCTTTTTTACCTTCTTT+TGG + chr8_4:19268657-19268676 None:intergenic 25.0%
!!! TGCATGTTTTTGCTAATTAT+AGG - chr8_4:19268890-19268909 Msa1317740:CDS 25.0%
! TTAAAAACTAACCTTGGATA+TGG + chr8_4:19269015-19269034 None:intergenic 25.0%
!! TTTTCATATGAACTGTAAGT+TGG + chr8_4:19269338-19269357 None:intergenic 25.0%
! ATGTAACTATGAACATTGAT+GGG + chr8_4:19269533-19269552 None:intergenic 25.0%
! TATGTAACTATGAACATTGA+TGG + chr8_4:19269534-19269553 None:intergenic 25.0%
!!! TTGTTTTGTAAAAGGTTGTT+GGG + chr8_4:19269661-19269680 None:intergenic 25.0%
!!! GATGAAACTTGTTTTGTAAA+AGG + chr8_4:19269669-19269688 None:intergenic 25.0%
!! TGAATTTGAGTTATCTGATA+TGG - chr8_4:19269794-19269813 Msa1317740:intron 25.0%
!!! TTTTTGTTTTTTGAGGTTAG+AGG - chr8_4:19270229-19270248 Msa1317740:CDS 25.0%
! TTTGTACATTACCAAAAGTA+TGG + chr8_4:19270387-19270406 None:intergenic 25.0%
!!! TGGAACTTTTAGTTTCAAAG+GGG + chr8_4:19268454-19268473 None:intergenic 30.0%
AAGTTCATGCAATTCTTCAA+TGG + chr8_4:19268474-19268493 None:intergenic 30.0%
GATGATGATTTGAAGAAGAA+AGG + chr8_4:19268503-19268522 None:intergenic 30.0%
! TTATTAACCAGAAGCTGTTT+TGG + chr8_4:19268596-19268615 None:intergenic 30.0%
! TTTTACCTTCTTTTGGATCT+TGG + chr8_4:19268650-19268669 None:intergenic 30.0%
TATGGTCAAAAACCAATCAA+AGG - chr8_4:19268985-19269004 Msa1317740:CDS 30.0%
!! TATGAACTGTAAGTTGGTTT+CGG + chr8_4:19269332-19269351 None:intergenic 30.0%
! CAAACTTTGTTTGATTCACA+GGG - chr8_4:19269440-19269459 Msa1317740:intron 30.0%
! AAACTTTGTTTGATTCACAG+GGG - chr8_4:19269441-19269460 Msa1317740:intron 30.0%
ATGTTCATAGTTACATACAC+TGG - chr8_4:19269537-19269556 Msa1317740:intron 30.0%
!!! CTTGTTTTGTAAAAGGTTGT+TGG + chr8_4:19269662-19269681 None:intergenic 30.0%
! AATGATGAATGATGATGATG+AGG - chr8_4:19269767-19269786 Msa1317740:intron 30.0%
GTAACAGATGATTTCTTTGA+AGG - chr8_4:19269819-19269838 Msa1317740:intron 30.0%
! AGATATGTCTCCACTAATTT+TGG - chr8_4:19270131-19270150 Msa1317740:CDS 30.0%
! AGCTTTTCCTTATAGAGAAT+AGG - chr8_4:19270177-19270196 Msa1317740:CDS 30.0%
! GCTTTTCCTTATAGAGAATA+GGG - chr8_4:19270178-19270197 Msa1317740:CDS 30.0%
TCTAATCCCTATTCTCTATA+AGG + chr8_4:19270187-19270206 None:intergenic 30.0%
!!! TTTTTTGAGGTTAGAGGAAT+TGG - chr8_4:19270235-19270254 Msa1317740:CDS 30.0%
TTAGAGGAATTGGTACATTA+TGG - chr8_4:19270245-19270264 Msa1317740:CDS 30.0%
TAACTAACAATGCTATGTGA+AGG - chr8_4:19270276-19270295 Msa1317740:CDS 30.0%
AACTAACAATGCTATGTGAA+GGG - chr8_4:19270277-19270296 Msa1317740:CDS 30.0%
!!! TGGAACTTTTAGTTTCAAAG+GGG + chr8_4:19268454-19268473 None:intergenic 30.0%
AAGTTCATGCAATTCTTCAA+TGG + chr8_4:19268474-19268493 None:intergenic 30.0%
GATGATGATTTGAAGAAGAA+AGG + chr8_4:19268503-19268522 None:intergenic 30.0%
! TTATTAACCAGAAGCTGTTT+TGG + chr8_4:19268596-19268615 None:intergenic 30.0%
! TTTTACCTTCTTTTGGATCT+TGG + chr8_4:19268650-19268669 None:intergenic 30.0%
TATGGTCAAAAACCAATCAA+AGG - chr8_4:19268985-19269004 Msa1317740:CDS 30.0%
!! TATGAACTGTAAGTTGGTTT+CGG + chr8_4:19269332-19269351 None:intergenic 30.0%
! CAAACTTTGTTTGATTCACA+GGG - chr8_4:19269440-19269459 Msa1317740:intron 30.0%
! AAACTTTGTTTGATTCACAG+GGG - chr8_4:19269441-19269460 Msa1317740:intron 30.0%
ATGTTCATAGTTACATACAC+TGG - chr8_4:19269537-19269556 Msa1317740:intron 30.0%
!!! CTTGTTTTGTAAAAGGTTGT+TGG + chr8_4:19269662-19269681 None:intergenic 30.0%
! AATGATGAATGATGATGATG+AGG - chr8_4:19269767-19269786 Msa1317740:intron 30.0%
GTAACAGATGATTTCTTTGA+AGG - chr8_4:19269819-19269838 Msa1317740:intron 30.0%
! AGATATGTCTCCACTAATTT+TGG - chr8_4:19270131-19270150 Msa1317740:CDS 30.0%
! AGCTTTTCCTTATAGAGAAT+AGG - chr8_4:19270177-19270196 Msa1317740:CDS 30.0%
! GCTTTTCCTTATAGAGAATA+GGG - chr8_4:19270178-19270197 Msa1317740:CDS 30.0%
TCTAATCCCTATTCTCTATA+AGG + chr8_4:19270187-19270206 None:intergenic 30.0%
!!! TTTTTTGAGGTTAGAGGAAT+TGG - chr8_4:19270235-19270254 Msa1317740:CDS 30.0%
TTAGAGGAATTGGTACATTA+TGG - chr8_4:19270245-19270264 Msa1317740:CDS 30.0%
TAACTAACAATGCTATGTGA+AGG - chr8_4:19270276-19270295 Msa1317740:CDS 30.0%
AACTAACAATGCTATGTGAA+GGG - chr8_4:19270277-19270296 Msa1317740:CDS 30.0%
AGAGAGATAGAGAGAAAAGA+GGG + chr8_4:19268179-19268198 None:intergenic 35.0%
CTTTCAGACCTTGTCTTTAA+CGG - chr8_4:19268232-19268251 Msa1317740:three_prime_UTR 35.0%
!! CTTGACTTGTTTGTTCTGTA+GGG + chr8_4:19268415-19268434 None:intergenic 35.0%
!! ACTTGACTTGTTTGTTCTGT+AGG + chr8_4:19268416-19268435 None:intergenic 35.0%
! TGATGGTGATGAATAAGAGA+AGG + chr8_4:19268552-19268571 None:intergenic 35.0%
!! ATATGAGGTGATTTTGGTGA+TGG + chr8_4:19268569-19268588 None:intergenic 35.0%
! GGTTGTATATGAGGTGATTT+TGG + chr8_4:19268575-19268594 None:intergenic 35.0%
!!! AGCTGTTTTGGTTGTATATG+AGG + chr8_4:19268584-19268603 None:intergenic 35.0%
TATACAACCAAAACAGCTTC+TGG - chr8_4:19268586-19268605 Msa1317740:three_prime_UTR 35.0%
TAGGAAGATTCAGCATAAGA+AGG - chr8_4:19268909-19268928 Msa1317740:CDS 35.0%
CCTGTGAATCAAACAAAGTT+TGG + chr8_4:19269442-19269461 None:intergenic 35.0%
! CCAAACTTTGTTTGATTCAC+AGG - chr8_4:19269439-19269458 Msa1317740:intron 35.0%
TACAGATGTAGCAGTTCAAA+AGG - chr8_4:19269468-19269487 Msa1317740:intron 35.0%
GAAGGTTTAGATGAATTGAC+AGG - chr8_4:19269837-19269856 Msa1317740:intron 35.0%
TTTATAGGTGGCAACATCAT+TGG + chr8_4:19269950-19269969 None:intergenic 35.0%
! TATGTCTCCACTAATTTTGG+TGG - chr8_4:19270134-19270153 Msa1317740:CDS 35.0%
ACTAACAATGCTATGTGAAG+GGG - chr8_4:19270278-19270297 Msa1317740:CDS 35.0%
AGAGAGATAGAGAGAAAAGA+GGG + chr8_4:19268179-19268198 None:intergenic 35.0%
CTTTCAGACCTTGTCTTTAA+CGG - chr8_4:19268232-19268251 Msa1317740:three_prime_UTR 35.0%
!! CTTGACTTGTTTGTTCTGTA+GGG + chr8_4:19268415-19268434 None:intergenic 35.0%
!! ACTTGACTTGTTTGTTCTGT+AGG + chr8_4:19268416-19268435 None:intergenic 35.0%
! TGATGGTGATGAATAAGAGA+AGG + chr8_4:19268552-19268571 None:intergenic 35.0%
!! ATATGAGGTGATTTTGGTGA+TGG + chr8_4:19268569-19268588 None:intergenic 35.0%
! GGTTGTATATGAGGTGATTT+TGG + chr8_4:19268575-19268594 None:intergenic 35.0%
!!! AGCTGTTTTGGTTGTATATG+AGG + chr8_4:19268584-19268603 None:intergenic 35.0%
TATACAACCAAAACAGCTTC+TGG - chr8_4:19268586-19268605 Msa1317740:three_prime_UTR 35.0%
TAGGAAGATTCAGCATAAGA+AGG - chr8_4:19268909-19268928 Msa1317740:CDS 35.0%
CCTGTGAATCAAACAAAGTT+TGG + chr8_4:19269442-19269461 None:intergenic 35.0%
! CCAAACTTTGTTTGATTCAC+AGG - chr8_4:19269439-19269458 Msa1317740:intron 35.0%
TACAGATGTAGCAGTTCAAA+AGG - chr8_4:19269468-19269487 Msa1317740:intron 35.0%
GAAGGTTTAGATGAATTGAC+AGG - chr8_4:19269837-19269856 Msa1317740:intron 35.0%
TTTATAGGTGGCAACATCAT+TGG + chr8_4:19269950-19269969 None:intergenic 35.0%
! TATGTCTCCACTAATTTTGG+TGG - chr8_4:19270134-19270153 Msa1317740:CDS 35.0%
ACTAACAATGCTATGTGAAG+GGG - chr8_4:19270278-19270297 Msa1317740:CDS 35.0%
GAGAGAGATAGAGAGAAAAG+AGG + chr8_4:19268180-19268199 None:intergenic 40.0%
GACCTTGTCTTTAACGGTTA+TGG - chr8_4:19268238-19268257 Msa1317740:three_prime_UTR 40.0%
CTCCATAACCGTTAAAGACA+AGG + chr8_4:19268243-19268262 None:intergenic 40.0%
CTTGTCTTTAACGGTTATGG+AGG - chr8_4:19268241-19268260 Msa1317740:three_prime_UTR 40.0%
TAACGGTTATGGAGGTAGAT+TGG - chr8_4:19268249-19268268 Msa1317740:three_prime_UTR 40.0%
AACGGTTATGGAGGTAGATT+GGG - chr8_4:19268250-19268269 Msa1317740:three_prime_UTR 40.0%
!! TGTTGAAGAAGGTGTTGATG+AGG + chr8_4:19268360-19268379 None:intergenic 40.0%
!! TCTTTTGGATCTTGGTGTGA+TGG + chr8_4:19268642-19268661 None:intergenic 40.0%
TCACACCAAGATCCAAAAGA+AGG - chr8_4:19268642-19268661 Msa1317740:CDS 40.0%
AGAAGCTCTCATCAGACATA+TGG - chr8_4:19268950-19268969 Msa1317740:CDS 40.0%
GAAGCTCTCATCAGACATAT+GGG - chr8_4:19268951-19268970 Msa1317740:CDS 40.0%
ATATGGGCATGGAGGAAATA+TGG - chr8_4:19268967-19268986 Msa1317740:CDS 40.0%
! CAGCTAAGAAACAAGTTGAG+AGG - chr8_4:19269496-19269515 Msa1317740:intron 40.0%
! AATTTCTGTGAGTTGGAGCA+GGG + chr8_4:19269575-19269594 None:intergenic 40.0%
GCAAGAGAATTTCTGTGAGT+TGG + chr8_4:19269582-19269601 None:intergenic 40.0%
ACTCACAGAAATTCTCTTGC+TGG - chr8_4:19269582-19269601 Msa1317740:CDS 40.0%
GTCAGAGAGCAAAGATGATT+TGG - chr8_4:19269740-19269759 Msa1317740:intron 40.0%
! GATGAATTGACAGGTTTTGC+TGG - chr8_4:19269846-19269865 Msa1317740:intron 40.0%
GGAAAAACAGTAGCATCATC+TGG - chr8_4:19269867-19269886 Msa1317740:intron 40.0%
AAAACAGTAGCATCATCTGG+TGG - chr8_4:19269870-19269889 Msa1317740:intron 40.0%
GAGCAATACTAGCAGCAAAA+GGG + chr8_4:19269911-19269930 None:intergenic 40.0%
AGAGCAATACTAGCAGCAAA+AGG + chr8_4:19269912-19269931 None:intergenic 40.0%
TCAGCTACCACCAAAATTAG+TGG + chr8_4:19270144-19270163 None:intergenic 40.0%
GAGGAATTGGTACATTATGG+AGG - chr8_4:19270248-19270267 Msa1317740:CDS 40.0%
! GTGATTGCTAGCCATACTTT+TGG - chr8_4:19270373-19270392 Msa1317740:five_prime_UTR 40.0%
GAGAGAGATAGAGAGAAAAG+AGG + chr8_4:19268180-19268199 None:intergenic 40.0%
GACCTTGTCTTTAACGGTTA+TGG - chr8_4:19268238-19268257 Msa1317740:three_prime_UTR 40.0%
CTCCATAACCGTTAAAGACA+AGG + chr8_4:19268243-19268262 None:intergenic 40.0%
CTTGTCTTTAACGGTTATGG+AGG - chr8_4:19268241-19268260 Msa1317740:three_prime_UTR 40.0%
TAACGGTTATGGAGGTAGAT+TGG - chr8_4:19268249-19268268 Msa1317740:three_prime_UTR 40.0%
AACGGTTATGGAGGTAGATT+GGG - chr8_4:19268250-19268269 Msa1317740:three_prime_UTR 40.0%
!! TGTTGAAGAAGGTGTTGATG+AGG + chr8_4:19268360-19268379 None:intergenic 40.0%
!! TCTTTTGGATCTTGGTGTGA+TGG + chr8_4:19268642-19268661 None:intergenic 40.0%
TCACACCAAGATCCAAAAGA+AGG - chr8_4:19268642-19268661 Msa1317740:CDS 40.0%
AGAAGCTCTCATCAGACATA+TGG - chr8_4:19268950-19268969 Msa1317740:CDS 40.0%
GAAGCTCTCATCAGACATAT+GGG - chr8_4:19268951-19268970 Msa1317740:CDS 40.0%
ATATGGGCATGGAGGAAATA+TGG - chr8_4:19268967-19268986 Msa1317740:CDS 40.0%
! CAGCTAAGAAACAAGTTGAG+AGG - chr8_4:19269496-19269515 Msa1317740:intron 40.0%
! AATTTCTGTGAGTTGGAGCA+GGG + chr8_4:19269575-19269594 None:intergenic 40.0%
GCAAGAGAATTTCTGTGAGT+TGG + chr8_4:19269582-19269601 None:intergenic 40.0%
ACTCACAGAAATTCTCTTGC+TGG - chr8_4:19269582-19269601 Msa1317740:CDS 40.0%
GTCAGAGAGCAAAGATGATT+TGG - chr8_4:19269740-19269759 Msa1317740:intron 40.0%
! GATGAATTGACAGGTTTTGC+TGG - chr8_4:19269846-19269865 Msa1317740:intron 40.0%
GGAAAAACAGTAGCATCATC+TGG - chr8_4:19269867-19269886 Msa1317740:intron 40.0%
AAAACAGTAGCATCATCTGG+TGG - chr8_4:19269870-19269889 Msa1317740:intron 40.0%
GAGCAATACTAGCAGCAAAA+GGG + chr8_4:19269911-19269930 None:intergenic 40.0%
AGAGCAATACTAGCAGCAAA+AGG + chr8_4:19269912-19269931 None:intergenic 40.0%
TCAGCTACCACCAAAATTAG+TGG + chr8_4:19270144-19270163 None:intergenic 40.0%
GAGGAATTGGTACATTATGG+AGG - chr8_4:19270248-19270267 Msa1317740:CDS 40.0%
! GTGATTGCTAGCCATACTTT+TGG - chr8_4:19270373-19270392 Msa1317740:five_prime_UTR 40.0%
GATCTACATGCTGTAGTCAG+AGG - chr8_4:19268272-19268291 Msa1317740:three_prime_UTR 45.0%
!! TGAAGAAGGTGTTGATGAGG+TGG + chr8_4:19268357-19268376 None:intergenic 45.0%
GAGAAGGAAGTTGAAGAGAG+AGG + chr8_4:19268536-19268555 None:intergenic 45.0%
TCTCATCAGACATATGGGCA+TGG - chr8_4:19268956-19268975 Msa1317740:CDS 45.0%
GGATATGGTGAGCCTTTGAT+TGG + chr8_4:19269000-19269019 None:intergenic 45.0%
TCAAAGGCTCACCATATCCA+AGG - chr8_4:19269001-19269020 Msa1317740:CDS 45.0%
! GAATTTCTGTGAGTTGGAGC+AGG + chr8_4:19269576-19269595 None:intergenic 45.0%
GTGTCAGTTTGTGGTGACAA+TGG + chr8_4:19269624-19269643 None:intergenic 45.0%
TCTTCAGCAGTGTCAGTTTG+TGG + chr8_4:19269633-19269652 None:intergenic 45.0%
ATCCACATCAGAAGCTGAAG+AGG - chr8_4:19269689-19269708 Msa1317740:intron 45.0%
TTCCTCTTCAGCTTCTGATG+TGG + chr8_4:19269694-19269713 None:intergenic 45.0%
ATCAGAAGCTGAAGAGGAAG+AGG - chr8_4:19269695-19269714 Msa1317740:intron 45.0%
!! TCATCTGGTGGTGACTGTTT+TGG - chr8_4:19269882-19269901 Msa1317740:intron 45.0%
AGTATTGCTCTTCCTGCTTG+TGG - chr8_4:19269921-19269940 Msa1317740:CDS 45.0%
CAGTGTCCTGTCAGACATAA+GGG + chr8_4:19269985-19270004 None:intergenic 45.0%
TCAGTGTCCTGTCAGACATA+AGG + chr8_4:19269986-19270005 None:intergenic 45.0%
GATCTACATGCTGTAGTCAG+AGG - chr8_4:19268272-19268291 Msa1317740:three_prime_UTR 45.0%
!! TGAAGAAGGTGTTGATGAGG+TGG + chr8_4:19268357-19268376 None:intergenic 45.0%
GAGAAGGAAGTTGAAGAGAG+AGG + chr8_4:19268536-19268555 None:intergenic 45.0%
TCTCATCAGACATATGGGCA+TGG - chr8_4:19268956-19268975 Msa1317740:CDS 45.0%
GGATATGGTGAGCCTTTGAT+TGG + chr8_4:19269000-19269019 None:intergenic 45.0%
TCAAAGGCTCACCATATCCA+AGG - chr8_4:19269001-19269020 Msa1317740:CDS 45.0%
! GAATTTCTGTGAGTTGGAGC+AGG + chr8_4:19269576-19269595 None:intergenic 45.0%
GTGTCAGTTTGTGGTGACAA+TGG + chr8_4:19269624-19269643 None:intergenic 45.0%
TCTTCAGCAGTGTCAGTTTG+TGG + chr8_4:19269633-19269652 None:intergenic 45.0%
ATCCACATCAGAAGCTGAAG+AGG - chr8_4:19269689-19269708 Msa1317740:intron 45.0%
TTCCTCTTCAGCTTCTGATG+TGG + chr8_4:19269694-19269713 None:intergenic 45.0%
ATCAGAAGCTGAAGAGGAAG+AGG - chr8_4:19269695-19269714 Msa1317740:intron 45.0%
!! TCATCTGGTGGTGACTGTTT+TGG - chr8_4:19269882-19269901 Msa1317740:intron 45.0%
AGTATTGCTCTTCCTGCTTG+TGG - chr8_4:19269921-19269940 Msa1317740:CDS 45.0%
CAGTGTCCTGTCAGACATAA+GGG + chr8_4:19269985-19270004 None:intergenic 45.0%
TCAGTGTCCTGTCAGACATA+AGG + chr8_4:19269986-19270005 None:intergenic 45.0%
!!! AAAGAGGGCGCTGACTTTTG+AGG + chr8_4:19268164-19268183 None:intergenic 50.0%
TAAGGTGGTTGTTGAGGTGG+TGG + chr8_4:19268333-19268352 None:intergenic 50.0%
! TGTTGATGAGGTGGCTAAGG+TGG + chr8_4:19268348-19268367 None:intergenic 50.0%
!! AGGTGTTGATGAGGTGGCTA+AGG + chr8_4:19268351-19268370 None:intergenic 50.0%
CATCAGACATATGGGCATGG+AGG - chr8_4:19268959-19268978 Msa1317740:CDS 50.0%
ATTGCTCTTCCTGCTTGTGG+TGG - chr8_4:19269924-19269943 Msa1317740:CDS 50.0%
! TCGTGTCGGTGCTTTATAGG+TGG + chr8_4:19269962-19269981 None:intergenic 50.0%
GTCAGACATAAGGGTCGTGT+CGG + chr8_4:19269976-19269995 None:intergenic 50.0%
ACACGACCCTTATGTCTGAC+AGG - chr8_4:19269976-19269995 Msa1317740:CDS 50.0%
GCTATGTGTCAGTGTCGTGT+CGG - chr8_4:19270056-19270075 Msa1317740:CDS 50.0%
!!! AAAGAGGGCGCTGACTTTTG+AGG + chr8_4:19268164-19268183 None:intergenic 50.0%
TAAGGTGGTTGTTGAGGTGG+TGG + chr8_4:19268333-19268352 None:intergenic 50.0%
! TGTTGATGAGGTGGCTAAGG+TGG + chr8_4:19268348-19268367 None:intergenic 50.0%
!! AGGTGTTGATGAGGTGGCTA+AGG + chr8_4:19268351-19268370 None:intergenic 50.0%
CATCAGACATATGGGCATGG+AGG - chr8_4:19268959-19268978 Msa1317740:CDS 50.0%
ATTGCTCTTCCTGCTTGTGG+TGG - chr8_4:19269924-19269943 Msa1317740:CDS 50.0%
! TCGTGTCGGTGCTTTATAGG+TGG + chr8_4:19269962-19269981 None:intergenic 50.0%
GTCAGACATAAGGGTCGTGT+CGG + chr8_4:19269976-19269995 None:intergenic 50.0%
ACACGACCCTTATGTCTGAC+AGG - chr8_4:19269976-19269995 Msa1317740:CDS 50.0%
GCTATGTGTCAGTGTCGTGT+CGG - chr8_4:19270056-19270075 Msa1317740:CDS 50.0%
GGCTAAGGTGGTTGTTGAGG+TGG + chr8_4:19268336-19268355 None:intergenic 55.0%
GGTGGCTAAGGTGGTTGTTG+AGG + chr8_4:19268339-19268358 None:intergenic 55.0%
CATCATTGGCCACCACAAGC+AGG + chr8_4:19269936-19269955 None:intergenic 55.0%
! GGGTCGTGTCGGTGCTTTAT+AGG + chr8_4:19269965-19269984 None:intergenic 55.0%
GGCTAAGGTGGTTGTTGAGG+TGG + chr8_4:19268336-19268355 None:intergenic 55.0%
GGTGGCTAAGGTGGTTGTTG+AGG + chr8_4:19268339-19268358 None:intergenic 55.0%
CATCATTGGCCACCACAAGC+AGG + chr8_4:19269936-19269955 None:intergenic 55.0%
! GGGTCGTGTCGGTGCTTTAT+AGG + chr8_4:19269965-19269984 None:intergenic 55.0%
GGAAGAGGAGGAGGTGAGGT+TGG + chr8_4:19268303-19268322 None:intergenic 60.0%
AGGAGGAAGAGGAGGAGGTG+AGG + chr8_4:19268307-19268326 None:intergenic 60.0%
!! TGTTGAGGTGGTGGAGGAGG+AGG + chr8_4:19268324-19268343 None:intergenic 60.0%
!! GGTTGTTGAGGTGGTGGAGG+AGG + chr8_4:19268327-19268346 None:intergenic 60.0%
! GGTGGTTGTTGAGGTGGTGG+AGG + chr8_4:19268330-19268349 None:intergenic 60.0%
GGAAGAGGAGGAGGTGAGGT+TGG + chr8_4:19268303-19268322 None:intergenic 60.0%
AGGAGGAAGAGGAGGAGGTG+AGG + chr8_4:19268307-19268326 None:intergenic 60.0%
!! TGTTGAGGTGGTGGAGGAGG+AGG + chr8_4:19268324-19268343 None:intergenic 60.0%
!! GGTTGTTGAGGTGGTGGAGG+AGG + chr8_4:19268327-19268346 None:intergenic 60.0%
! GGTGGTTGTTGAGGTGGTGG+AGG + chr8_4:19268330-19268349 None:intergenic 60.0%
GGAGGAGGAGGAAGAGGAGG+AGG + chr8_4:19268312-19268331 None:intergenic 65.0%
GGTGGAGGAGGAGGAAGAGG+AGG + chr8_4:19268315-19268334 None:intergenic 65.0%
!! GGTGGTGGAGGAGGAGGAAG+AGG + chr8_4:19268318-19268337 None:intergenic 65.0%
GGAGGAGGAGGAAGAGGAGG+AGG + chr8_4:19268312-19268331 None:intergenic 65.0%
GGTGGAGGAGGAGGAAGAGG+AGG + chr8_4:19268315-19268334 None:intergenic 65.0%
!! GGTGGTGGAGGAGGAGGAAG+AGG + chr8_4:19268318-19268337 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 19268146 19270418 19268146 ID=Msa1317740;Name=Msa1317740
chr8_4 mRNA 19268146 19270418 19268146 ID=Msa1317740-mRNA-1;Parent=Msa1317740;Name=Msa1317740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=111|1|1|1|1|1|3|465|336
chr8_4 exon 19268146 19269103 19268146 ID=Msa1317740-mRNA-1:exon:7099;Parent=Msa1317740-mRNA-1
chr8_4 exon 19269542 19269652 19269542 ID=Msa1317740-mRNA-1:exon:7098;Parent=Msa1317740-mRNA-1
chr8_4 exon 19269901 19270418 19269901 ID=Msa1317740-mRNA-1:exon:7097;Parent=Msa1317740-mRNA-1
chr8_4 five_prime_UTR 19270308 19270418 19270308 ID=Msa1317740-mRNA-1:five_prime_utr;Parent=Msa1317740-mRNA-1
chr8_4 CDS 19269901 19270307 19269901 ID=Msa1317740-mRNA-1:cds;Parent=Msa1317740-mRNA-1
chr8_4 CDS 19269542 19269652 19269542 ID=Msa1317740-mRNA-1:cds;Parent=Msa1317740-mRNA-1
chr8_4 CDS 19268611 19269103 19268611 ID=Msa1317740-mRNA-1:cds;Parent=Msa1317740-mRNA-1
chr8_4 three_prime_UTR 19268146 19268610 19268146 ID=Msa1317740-mRNA-1:three_prime_utr;Parent=Msa1317740-mRNA-1
Gene Sequence

>Msa1317740

ATGGAGGTAGATTGGGATCTACATGCTGTAGTCAGAGGCTATACCAACCTCACCTCCTCCTCTTCCTCCTCCTCCACCACCTCAACAACCACCTTAGCCACCTCATCAACACCTTCTTCAACATCTTATAGTAATAATAACTTTTTCTCTATTTACCCTACAGAACAAACAAGTCAAGTTTTTTCACTTTCAAACCCCTTTGAAACTAAAAGTTCCATTGAAGAATTGCATGAACTTTGCAAACCTTTCTTCTTCAAATCATCATCATCATCACAACCTCTCTCTTCAACTTCCTTCTCTTATTCATCACCATCACCAAAATCACCTCATATACAACCAAAACAGCTTCTGGTTAATAACAAGCTTCATCATGCTGCTTCTGCCATCACACCAAGATCCAAAAGAAGGAAGATTCAGCATAAGAAGGTTTGTGAAGTGCAAGCTGAGAAGCTCTCATCAGACATATGGGCATGGAGGAAATATGGTCAAAAACCAATCAAAGGCTCACCATATCCAAGGGGATATTACAGATGTAGCAGTTCAAAAGGATGTTCAGCTAAGAAACAAGTTGAGAGGAACAAATCAGACCCATCAATGTTCATAGTTACATACACTGGTGAACACAGTCACCCTGCTCCAACTCACAGAAATTCTCTTGCTGGTTCAACAAGACAGAAGCCATTGTCACCACAAACTGACACTGCTGAAGACTCTTCCCAACAACCTTTTACAAAACAAGTTTCATCATCCACATCAGAAGCTGAAGAGGAAGAGGCTACAACACTCTTAAGTGTAAAGTCAGAGAGCAAAGATGATTTGGAAGAAATGATGAATGATGATGATGAGGAAAATGAATTTGAGTTATCTGATATGGTTGTAACAGATGATTTCTTTGAAGGTTTAGATGAATTGACAGGTTTTGCTGGAAAAACAGTAGCATCATCTGGTGGTGACTGTTTTGGTGACCCTTTTGCTGCTAGTATTGCTCTTCCTGCTTGTGGTGGCCAATGA
Protein sequence

>Msa1317740

MEVDWDLHAVVRGYTNLTSSSSSSSTTSTTTLATSSTPSSTSYSNNNFFSIYPTEQTSQVFSLSNPFETKSSIEELHELCKPFFFKSSSSSQPLSSTSFSYSSPSPKSPHIQPKQLLVNNKLHHAASAITPRSKRRKIQHKKVCEVQAEKLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSAKKQVERNKSDPSMFIVTYTGEHSHPAPTHRNSLAGSTRQKPLSPQTDTAEDSSQQPFTKQVSSSTSEAEEEEATTLLSVKSESKDDLEEMMNDDDEENEFELSDMVVTDDFFEGLDELTGFAGKTVASSGGDCFGDPFAASIALPACGGQ*