AlfalfaGEDB | Msa1167940

M. sativa cultivar zhongmu-4 / Msa1167940

KEGG: -
GO: -
PFAM: PF03398.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1167940	XP_003625747.2	93.798	387	13	4	213	592	1	383	0.0	731

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1167940	sp\|Q6YYX9\|SLC1_ORYSJ	49.176	364	163	5	233	589	34	382	1.18e-123	372

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1167940	G7L4Z8	93.798	387	13	4	213	592	1	383	0.0	731

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036560	Msa1167940	-0.803299	3.725066e-49	-8.615850e-47
Msa0064990	Msa1167940	0.805600	1.234640e-49	-8.615850e-47
Msa0078160	Msa1167940	-0.809591	1.754186e-50	-8.615850e-47
Msa0107830	Msa1167940	0.818398	2.001314e-52	-8.615850e-47
Msa0129290	Msa1167940	0.803190	3.923477e-49	-8.615850e-47
Msa0143830	Msa1167940	0.807597	4.675804e-50	-8.615850e-47
Msa0150910	Msa1167940	0.804225	2.392093e-49	-8.615850e-47
Msa0200090	Msa1167940	0.822547	2.234437e-53	-8.615850e-47
Msa0242720	Msa1167940	0.809203	2.125028e-50	-8.615850e-47
Msa0258280	Msa1167940	-0.800324	1.520358e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1167940	MtrunA17_Chr7g0265221	93.798	387	13	4	213	592	1	383	0.0	731
Msa1167940	MtrunA17_Chr1g0179801	69.191	383	104	4	213	590	1	374	0.0	561
Msa1167940	MtrunA17_Chr7g0250511	39.017	346	186	7	250	589	25	351	3.45e-83	264
Msa1167940	MtrunA17_Chr5g0426891	38.068	352	197	5	238	585	4	338	4.85e-83	263
Msa1167940	MtrunA17_Chr8g0345831	38.532	327	179	4	247	569	15	323	4.99e-75	243
Msa1167940	MtrunA17_Chr3g0128001	38.889	342	182	6	249	585	14	333	1.08e-71	234
Msa1167940	MtrunA17_Chr4g0050031	35.457	361	207	7	238	589	23	366	1.51e-70	231
Msa1167940	MtrunA17_Chr7g0242551	34.916	358	211	7	238	586	15	359	1.33e-65	218
Msa1167940	MtrunA17_Chr3g0126741	37.209	301	172	5	263	558	43	331	2.65e-65	218
Msa1167940	MtrunA17_Chr4g0006371	34.417	369	207	8	238	586	14	367	3.25e-65	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1167940	AT2G36690.2	58.268	381	135	5	213	588	1	362	7.35e-159	459
Msa1167940	AT2G36690.1	58.268	381	135	5	213	588	1	362	7.35e-159	459
Msa1167940	AT3G60290.1	39.344	366	197	7	229	588	7	353	6.93e-85	269
Msa1167940	AT2G44800.1	39.017	346	187	6	249	588	26	353	1.38e-80	258
Msa1167940	AT4G10500.1	41.667	312	160	4	250	557	20	313	7.19e-80	256
Msa1167940	AT4G10490.1	38.838	327	176	5	250	570	18	326	9.85e-79	253
Msa1167940	AT5G07480.1	35.657	373	200	8	222	582	2	346	4.27e-70	230
Msa1167940	AT2G38240.1	35.165	364	202	10	238	590	12	352	8.86e-66	219
Msa1167940	AT5G24530.1	35.393	356	197	7	241	586	5	337	5.35e-64	214
Msa1167940	AT3G11180.1	33.815	346	209	7	247	586	64	395	1.85e-59	204

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Find 143 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCAATATCAAGACAAA+TGG	0.490894	7_4:-60497311	Msa1167940:CDS
AACACTTACTGAAAGTCCAA+TGG	0.582866	7_4:+60498408	None:intergenic
AACCCTCTACTTCATCTTGG+AGG	0.550913	7_4:+60497337	None:intergenic
AACTACCAAATTCCTACCCC+AGG	0.583859	7_4:-60501081	Msa1167940:CDS
AAGAAGGAAAGGAACTGAAA+AGG	0.515463	7_4:-60501581	Msa1167940:CDS
AAGACTCAGTGTTCTGTTGG+AGG	0.531960	7_4:-60498479	Msa1167940:CDS
AAGATCAGTGAAATCAATTA+TGG	0.215332	7_4:+60499613	None:intergenic
AAGATTCTTCGATCTTCCAT+TGG	0.494960	7_4:-60498574	Msa1167940:CDS
AAGCCATCCTAGAAAGTTTA+GGG	0.338086	7_4:-60497539	Msa1167940:CDS
AATACAAGAGTGTATTACAT+AGG	0.514652	7_4:-60496739	Msa1167940:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTGTGCTACATAAAACAA+AGG	+	chr7_4:60496663-60496682	None:intergenic	30.0%
CAATTTGAACAAAGAAGGAA+AGG	-	chr7_4:60496914-60496933	Msa1167940:intron	30.0%
AAAAAGTGACACATTGAACT+TGG	-	chr7_4:60496977-60496996	Msa1167940:intron	30.0%
TACAAGTTAGAAGACAGATA+CGG	-	chr7_4:60497102-60497121	Msa1167940:intron	30.0%
AACGAAACACTTAATACACA+CGG	+	chr7_4:60497485-60497504	None:intergenic	30.0%
GTATATAGCTAGAAATGAGA+TGG	-	chr7_4:60498023-60498042	Msa1167940:intron	30.0%
AGAATAGAATCAGTCTTCTA+CGG	-	chr7_4:60498135-60498154	Msa1167940:intron	30.0%
TATTTATAGTAAAGGGTAGG+AGG	+	chr7_4:60498220-60498239	None:intergenic	30.0%
GTGTATTTATAGTAAAGGGT+AGG	+	chr7_4:60498223-60498242	None:intergenic	30.0%
AAGTTGGAAATTGAGAAAGA+AGG	+	chr7_4:60498282-60498301	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	60496459	60502069	60496459	ID=Msa1167940;Name=Msa1167940
chr7_4	mRNA	60496459	60502069	60496459	ID=Msa1167940-mRNA-1;Parent=Msa1167940;Name=Msa1167940-mRNA-1;_AED=0.13;_eAED=0.13;_QI=77\|0.77\|0.7\|1\|0.88\|0.8\|10\|67\|592
chr7_4	exon	60496459	60496777	60496459	ID=Msa1167940-mRNA-1:exon:18970;Parent=Msa1167940-mRNA-1
chr7_4	exon	60497254	60497617	60497254	ID=Msa1167940-mRNA-1:exon:18969;Parent=Msa1167940-mRNA-1
chr7_4	exon	60498417	60498652	60498417	ID=Msa1167940-mRNA-1:exon:18968;Parent=Msa1167940-mRNA-1
chr7_4	exon	60499544	60499841	60499544	ID=Msa1167940-mRNA-1:exon:18967;Parent=Msa1167940-mRNA-1
chr7_4	exon	60500821	60500975	60500821	ID=Msa1167940-mRNA-1:exon:18966;Parent=Msa1167940-mRNA-1
chr7_4	exon	60501079	60501238	60501079	ID=Msa1167940-mRNA-1:exon:18965;Parent=Msa1167940-mRNA-1
chr7_4	exon	60501330	60501439	60501330	ID=Msa1167940-mRNA-1:exon:18964;Parent=Msa1167940-mRNA-1
chr7_4	exon	60501518	60501653	60501518	ID=Msa1167940-mRNA-1:exon:18963;Parent=Msa1167940-mRNA-1
chr7_4	exon	60501762	60501852	60501762	ID=Msa1167940-mRNA-1:exon:18962;Parent=Msa1167940-mRNA-1
chr7_4	exon	60502016	60502069	60502016	ID=Msa1167940-mRNA-1:exon:18961;Parent=Msa1167940-mRNA-1
chr7_4	five_prime_UTR	60502016	60502069	60502016	ID=Msa1167940-mRNA-1:five_prime_utr;Parent=Msa1167940-mRNA-1
chr7_4	five_prime_UTR	60501830	60501852	60501830	ID=Msa1167940-mRNA-1:five_prime_utr;Parent=Msa1167940-mRNA-1
chr7_4	CDS	60501762	60501829	60501762	ID=Msa1167940-mRNA-1:cds;Parent=Msa1167940-mRNA-1
chr7_4	CDS	60501518	60501653	60501518	ID=Msa1167940-mRNA-1:cds;Parent=Msa1167940-mRNA-1
chr7_4	CDS	60501330	60501439	60501330	ID=Msa1167940-mRNA-1:cds;Parent=Msa1167940-mRNA-1
chr7_4	CDS	60501079	60501238	60501079	ID=Msa1167940-mRNA-1:cds;Parent=Msa1167940-mRNA-1
chr7_4	CDS	60500821	60500975	60500821	ID=Msa1167940-mRNA-1:cds;Parent=Msa1167940-mRNA-1
chr7_4	CDS	60499544	60499841	60499544	ID=Msa1167940-mRNA-1:cds;Parent=Msa1167940-mRNA-1
chr7_4	CDS	60498417	60498652	60498417	ID=Msa1167940-mRNA-1:cds;Parent=Msa1167940-mRNA-1
chr7_4	CDS	60497254	60497617	60497254	ID=Msa1167940-mRNA-1:cds;Parent=Msa1167940-mRNA-1
chr7_4	CDS	60496526	60496777	60496526	ID=Msa1167940-mRNA-1:cds;Parent=Msa1167940-mRNA-1
chr7_4	three_prime_UTR	60496459	60496525	60496459	ID=Msa1167940-mRNA-1:three_prime_utr;Parent=Msa1167940-mRNA-1

Gene Sequence

>Msa1167940

ATGGATTGGCTGAAAAATACTGTGAGTGCTATTCTTGGGAAAGAACCTCTTACCCCTGCTCAAAAGTGCAAAGAGATGCTAGCTGAAGTATCTAGTGATTTTCGTCTCAATTTGAACAAAGAAGGAAAGGAACTGAAAAGGATAGAAAAGCAAATATCTTATTTGCTACAAAAAAGTGACACATTGAACTTGGCAAGGTTGGAGGTGGCTTCTCATTTACAAGTTAGAAGACAGATACGGATAAGTGAAATTATAATTAACTACTCTGAGATGCTGATTCCTAAGGCGGAAAGTCTCTATGTTGATGAGGAAGGTGATTGGACCCCAGAAACCAGGACAGCAATTGCGTCATTGAATTATTTATCGAAAAGGCTATCTACATCCAAGAAACTGAATAATCTTTTAAGTTGTTTGAAAGTTGAATTTAATGGCAAGCACTGTTTGGGTAGAACTACCAAATTCCTACCCCAGGAGGTTACAAGGATGTTCGGTACAATCAACCCATCTAACTTCCATAGGGATGTTCTCCTAGCTGACATCGCAGCACGAAATTGTGGCCTGGAAAGGGTAGCTGTCCAACTTCCTACAGAGGAGTACGCCATACATTTGCAGAATGTTCTCGAGGCTCTGTTACGCATGTCTCCTGCAATGGCAATGAATGATGAAAAGAATGAGGATTGTCATACAATAGAAAATGAATATCATAAAGGAGTGAAGCATTTGTATGAGAAAGGTTATCTTCATAAGGTACCAAAGAAGTATATGTTTCCAGCTTCGGAAAGACCCACAAAGAGTATGGATGATTCAAATGTTGCTAAGGAAAATCTTCAGCTACCCATAATTGATTTCACTGATCTTATTGGTCCAAATAGGCTACAAGCTCTTGAGTCTCTAGCCAATGCTTGTGAACAATATGGATTTTTCCAGCTAGTAAATCACAACATATCAGATAATATAACAAGGAGCATCATAGATGTTGTAGGAAGATTCTTCGATCTTCCATTGGAGGAGAGAGCTAAGTATATGACAAGTGATATGAGAGCAGCTGTGAGATATGGGACCAGTTTCAGTCAAACAAAAGACTCAGTGTTCTGTTGGAGGGATTTCTTGAAACTCATTTGTAATCCTTTGCCTGATTGGCCTGCCTCCCCATTGGACTTTCAAGAAGTGGTGGCCAGCTATGCAGAAGAAACCAAACATTTGTTCTTGACAATAATGGAAGCCATCCTAGAAAGTTTAGGGATTATGGAAGCCAACCAAGAAGAGGAGGCCAAAGAAAATGACAACAACAATAATAATATTATGAAAGAATTGGACAATGGGAGCCAGATGTTGGTAACCAATTTTTACCCACCATGCCCTGAACCAGACCTAACCCTTGGAATGCACCCTCACTCTGATTATGGCTTCCTCACACTTCTCCTCCAAGATGAAGTAGAGGGTTTGCAAATCCAATATCAAGACAAATGGCTTACTGTTCAACCTATTCCCAATGCTTTCGTTGTCAATATTGGTGATCATTTAGAGATATTTAGCAACGGAAAATACAAGAGTGTATTACATAGGGTTCTGGTGAATGAAGCTAAGAGCAGAGTATCAGTGGCTTCTCTGCATAGCCTTCCTTTTGACTGCACTGTGAGACCGTCACCAAAACTCATTGATGAAGACAATCCAAAGCGTTACATGGACACAGATTTTGCTAGCTTTCTTGCGTATGTGTCCACAAGAGAAACCAAGAAAAAGGATTTCCTAGAGTCCAGAAAATTTACATACACATAA

Protein sequence

>Msa1167940

MDWLKNTVSAILGKEPLTPAQKCKEMLAEVSSDFRLNLNKEGKELKRIEKQISYLLQKSDTLNLARLEVASHLQVRRQIRISEIIINYSEMLIPKAESLYVDEEGDWTPETRTAIASLNYLSKRLSTSKKLNNLLSCLKVEFNGKHCLGRTTKFLPQEVTRMFGTINPSNFHRDVLLADIAARNCGLERVAVQLPTEEYAIHLQNVLEALLRMSPAMAMNDEKNEDCHTIENEYHKGVKHLYEKGYLHKVPKKYMFPASERPTKSMDDSNVAKENLQLPIIDFTDLIGPNRLQALESLANACEQYGFFQLVNHNISDNITRSIIDVVGRFFDLPLEERAKYMTSDMRAAVRYGTSFSQTKDSVFCWRDFLKLICNPLPDWPASPLDFQEVVASYAEETKHLFLTIMEAILESLGIMEANQEEEAKENDNNNNNIMKELDNGSQMLVTNFYPPCPEPDLTLGMHPHSDYGFLTLLLQDEVEGLQIQYQDKWLTVQPIPNAFVVNIGDHLEIFSNGKYKSVLHRVLVNEAKSRVSVASLHSLPFDCTVRPSPKLIDEDNPKRYMDTDFASFLAYVSTRETKKKDFLESRKFTYT*