Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006120 | GAU26000.1 | 91.746 | 315 | 3 | 2 | 1 | 292 | 1 | 315 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006120 | sp|Q9LHA4|VA0D2_ARATH | 78.063 | 351 | 18 | 2 | 1 | 292 | 1 | 351 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006120 | A0A2Z6MQZ3 | 91.746 | 315 | 3 | 2 | 1 | 292 | 1 | 315 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024210 | Msa1006120 | 0.805835 | 1.102064e-49 | -8.615850e-47 |
| Msa0120040 | Msa1006120 | 0.815273 | 1.005987e-51 | -8.615850e-47 |
| Msa0606720 | Msa1006120 | -0.803185 | 3.933582e-49 | -8.615850e-47 |
| Msa0607050 | Msa1006120 | -0.805143 | 1.539300e-49 | -8.615850e-47 |
| Msa0695100 | Msa1006120 | -0.800829 | 1.199615e-48 | -8.615850e-47 |
| Msa0709400 | Msa1006120 | -0.814050 | 1.876709e-51 | -8.615850e-47 |
| Msa1006120 | Msa1048280 | 0.851632 | 7.819892e-61 | -8.615850e-47 |
| Msa1006120 | Msa1100240 | 0.813428 | 2.572785e-51 | -8.615850e-47 |
| Msa1006120 | Msa1201430 | 0.800885 | 1.168349e-48 | -8.615850e-47 |
| Msa1006120 | Msa1244720 | 0.812668 | 3.775256e-51 | -8.615850e-47 |
| Msa1006120 | Msa1310770 | 0.831986 | 1.222954e-55 | -8.615850e-47 |
| Msa1006120 | Msa1374470 | -0.805508 | 1.290291e-49 | -8.615850e-47 |
| Msa0341050 | Msa1006120 | -0.813150 | 2.961542e-51 | -8.615850e-47 |
| Msa0484720 | Msa1006120 | -0.807700 | 4.447439e-50 | -8.615850e-47 |
| Msa0599520 | Msa1006120 | -0.803271 | 3.774432e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006120 | MtrunA17_Chr7g0216811 | 82.906 | 351 | 1 | 2 | 1 | 292 | 1 | 351 | 0.0 | 578 |
| Msa1006120 | MtrunA17_Chr7g0216691 | 66.019 | 206 | 9 | 3 | 61 | 205 | 9 | 214 | 1.15e-81 | 245 |
| Msa1006120 | MtrunA17_Chr7g0216711 | 97.115 | 104 | 2 | 1 | 189 | 292 | 28 | 130 | 7.91e-69 | 209 |
| Msa1006120 | MtrunA17_Chr7g0216741 | 61.749 | 183 | 31 | 4 | 129 | 292 | 8 | 170 | 3.86e-68 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006120 | AT3G28715.1 | 78.063 | 351 | 18 | 2 | 1 | 292 | 1 | 351 | 0.0 | 555 |
| Msa1006120 | AT3G28710.1 | 77.778 | 351 | 19 | 2 | 1 | 292 | 1 | 351 | 0.0 | 554 |
| Msa1006120 | AT3G28715.2 | 75.499 | 351 | 19 | 3 | 1 | 292 | 1 | 343 | 0.0 | 530 |
Find 93 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATATGCGGGAGCTTTAC+AGG | 0.265424 | 7_1:-4775716 | Msa1006120:CDS |
| ATCCGTACATGGTGGGAAAT+TGG | 0.289005 | 7_1:+4779061 | None:intergenic |
| CTTAGTACTTTACCTATTGA+TGG | 0.301406 | 7_1:+4775182 | None:intergenic |
| AAAATCTTCTGTAATATAGA+TGG | 0.306956 | 7_1:-4773625 | Msa1006120:three_prime_UTR |
| AATGAATTCGGGTCGGGTTA+TGG | 0.330646 | 7_1:+4779089 | None:intergenic |
| AAACTTTGATAGATTTGTTC+AGG | 0.335017 | 7_1:-4773502 | Msa1006120:three_prime_UTR |
| TGTAATCATCAACCAGCTTA+AGG | 0.351304 | 7_1:+4776221 | None:intergenic |
| AAATTGGATCTGAATGAATT+CGG | 0.351578 | 7_1:+4779077 | None:intergenic |
| CGCGTAGGTTCGTGCTGTTA+TGG | 0.355937 | 7_1:-4774148 | Msa1006120:intron |
| TTATAGCTTGTATGTTCGTT+TGG | 0.364191 | 7_1:-4773724 | Msa1006120:three_prime_UTR |
| CATCTCTCTGCTACTGAGTA+TGG | 0.378117 | 7_1:-4778907 | Msa1006120:CDS |
| TTGCTTAGCATTTGAGCAAC+AGG | 0.380262 | 7_1:-4774028 | Msa1006120:intron |
| TCTTCGCATATATGAGGTTA+AGG | 0.390572 | 7_1:-4773855 | Msa1006120:CDS |
| AAAATCTGTAAAAGTCTTCA+AGG | 0.413711 | 7_1:+4775393 | None:intergenic |
| GCAAGCTCCTCATGACCATA+TGG | 0.415911 | 7_1:+4774918 | None:intergenic |
| TTCGGGTCGGGTTATGGAAA+TGG | 0.420726 | 7_1:+4779095 | None:intergenic |
| ATCGTCAGAGGTCATCGTTC+CGG | 0.420796 | 7_1:-4778994 | Msa1006120:CDS |
| TCGTGTAGAAGCACTACAAC+CGG | 0.422546 | 7_1:-4779181 | Msa1006120:five_prime_UTR |
| CTGTGTTCTTCGCATATATG+AGG | 0.433817 | 7_1:-4773861 | Msa1006120:CDS |
| GACCTCTGACGATTGCTTCA+AGG | 0.445385 | 7_1:+4779004 | None:intergenic |
| GTAATCATCAACCAGCTTAA+GGG | 0.451926 | 7_1:+4776222 | None:intergenic |
| AATTGGATCTGAATGAATTC+GGG | 0.454149 | 7_1:+4779078 | None:intergenic |
| ATACGATAACTTAGCAAAGA+TGG | 0.456824 | 7_1:+4774104 | None:intergenic |
| ATCAGCGGTGGTTAACAAAC+CGG | 0.463277 | 7_1:+4778975 | None:intergenic |
| CTTCGCATATATGAGGTTAA+GGG | 0.463671 | 7_1:-4773854 | Msa1006120:CDS |
| ATTTCTAACAGCTACCCATA+TGG | 0.467809 | 7_1:-4774933 | Msa1006120:intron |
| TTGACAAAGGTTCTGTAGCT+TGG | 0.470359 | 7_1:+4776185 | None:intergenic |
| ATCTTTGCTAAGTTATCGTA+TGG | 0.475190 | 7_1:-4774102 | Msa1006120:CDS |
| AGAATGCCTTGTCAAGCATC+TGG | 0.476278 | 7_1:+4774073 | None:intergenic |
| GGTTCTTGTTGACACTCCTC+TGG | 0.476594 | 7_1:-4775691 | Msa1006120:CDS |
| TCTCCTCAGTATTGCCACTC+TGG | 0.481860 | 7_1:-4775748 | Msa1006120:intron |
| GTTATTCGCAAACAGAAACT+TGG | 0.488915 | 7_1:-4775273 | Msa1006120:intron |
| ATCCAATTTCCCACCATGTA+CGG | 0.494876 | 7_1:-4779063 | Msa1006120:exon |
| CTGTTAATATTACCATCAAT+AGG | 0.504459 | 7_1:-4775194 | Msa1006120:intron |
| GTAATGCACTCAGAGAAGTA+TGG | 0.507766 | 7_1:+4775666 | None:intergenic |
| GATCTGAATGAATTCGGGTC+GGG | 0.511096 | 7_1:+4779083 | None:intergenic |
| ATATATGAGGTTAAGGGAGC+AGG | 0.511670 | 7_1:-4773848 | Msa1006120:CDS |
| TATCAGCCTCAAAAGCTAGA+AGG | 0.516324 | 7_1:+4775223 | None:intergenic |
| TCGGGTTATGGAAATGGATC+GGG | 0.529232 | 7_1:+4779101 | None:intergenic |
| GTCTCTAATGATCGGCAACT+CGG | 0.530246 | 7_1:+4773674 | None:intergenic |
| ACATGAACATTGAAATAATG+AGG | 0.537251 | 7_1:-4775436 | Msa1006120:CDS |
| GGCAGTTGCTCAGAATATGC+GGG | 0.539064 | 7_1:-4775727 | Msa1006120:CDS |
| CTCCTCTCATTCTCTGAAGG+AGG | 0.542497 | 7_1:-4779142 | Msa1006120:five_prime_UTR |
| ACATTTCTCCACAATTGTTG+TGG | 0.543805 | 7_1:+4776246 | None:intergenic |
| TTAGCAAAGATGGATTGATA+AGG | 0.544322 | 7_1:+4774114 | None:intergenic |
| GTCGGGTTATGGAAATGGAT+CGG | 0.548455 | 7_1:+4779100 | None:intergenic |
| CATAGCTTCGAATCCGTACA+TGG | 0.553153 | 7_1:+4779050 | None:intergenic |
| AAATCTTCTGTAATATAGAT+GGG | 0.553782 | 7_1:-4773624 | Msa1006120:three_prime_UTR |
| CACCTCCTTCAGAGAATGAG+AGG | 0.554227 | 7_1:+4779140 | None:intergenic |
| ATACGTGATATACTCTAAGA+AGG | 0.558003 | 7_1:+4776162 | None:intergenic |
| GCAAAGATGGATTGATAAGG+AGG | 0.559317 | 7_1:+4774117 | None:intergenic |
| TATGCGGGAGCTTTACAGGC+TGG | 0.560140 | 7_1:-4775712 | Msa1006120:CDS |
| CTTCTCTAGTCTCTAATGAT+CGG | 0.562844 | 7_1:+4773666 | None:intergenic |
| CATCTCCTCTCATTCTCTGA+AGG | 0.564358 | 7_1:-4779145 | Msa1006120:five_prime_UTR |
| GCTTGACAAGGCATTCTATG+AGG | 0.564403 | 7_1:-4774067 | Msa1006120:CDS |
| GATGCATCTTGATATCATCA+AGG | 0.565033 | 7_1:+4778926 | None:intergenic |
| CAAGGCATTCTATGAGGAGG+AGG | 0.565752 | 7_1:-4774061 | Msa1006120:CDS |
| TATGGTCCTTATCTTCAAAA+CGG | 0.566062 | 7_1:-4778889 | Msa1006120:intron |
| TCAGAGAAGTATGGCGCCAG+AGG | 0.569493 | 7_1:+4775675 | None:intergenic |
| AATGAGGAACACTCTTTACA+AGG | 0.571212 | 7_1:-4775420 | Msa1006120:CDS |
| GTAACCGCCATGGATGTTGA+AGG | 0.571667 | 7_1:+4779026 | None:intergenic |
| CAAGCTCCTCATGACCATAT+GGG | 0.572988 | 7_1:+4774919 | None:intergenic |
| TGTCTGTGAGGACATTGATC+AGG | 0.574655 | 7_1:-4774895 | Msa1006120:intron |
| ATTGCATACCACAACAATTG+TGG | 0.577120 | 7_1:-4776254 | Msa1006120:CDS |
| ATTCGCAAACAGAAACTTGG+AGG | 0.580049 | 7_1:-4775270 | Msa1006120:intron |
| TGGCAGTTGCTCAGAATATG+CGG | 0.580523 | 7_1:-4775728 | Msa1006120:CDS |
| ATGCATCTTGATATCATCAA+GGG | 0.582404 | 7_1:+4778927 | None:intergenic |
| GGATCTGAATGAATTCGGGT+CGG | 0.589165 | 7_1:+4779082 | None:intergenic |
| CTCTGAGTGCATTACATCTG+AGG | 0.589763 | 7_1:-4775658 | Msa1006120:intron |
| GCTATGACCTTCAACATCCA+TGG | 0.599491 | 7_1:-4779033 | Msa1006120:CDS |
| GGAGAAATGTACCCTTAAGC+TGG | 0.602131 | 7_1:-4776233 | Msa1006120:CDS |
| CAAAGATGGATTGATAAGGA+GGG | 0.604520 | 7_1:+4774118 | None:intergenic |
| CGTGTAGAAGCACTACAACC+GGG | 0.611650 | 7_1:-4779180 | Msa1006120:five_prime_UTR |
| GAGATTGTTGTAATCAGCGG+TGG | 0.612888 | 7_1:+4778963 | None:intergenic |
| TTGCTTCAAGGTAACCGCCA+TGG | 0.615790 | 7_1:+4779016 | None:intergenic |
| ACAGAGATTGTTGTAATCAG+CGG | 0.619922 | 7_1:+4778960 | None:intergenic |
| AGGAGATCAGAAATCTTATG+TGG | 0.620146 | 7_1:-4773828 | Msa1006120:CDS |
| ACAATTGTTGTGGTATGCAA+TGG | 0.621263 | 7_1:+4776256 | None:intergenic |
| GCTTCGAATCCGTACATGGT+GGG | 0.624265 | 7_1:+4779054 | None:intergenic |
| CAGCTACCCATATGGTCATG+AGG | 0.630485 | 7_1:-4774925 | Msa1006120:CDS |
| AGCCTCAAAAGCTAGAAGGT+CGG | 0.630556 | 7_1:+4775227 | None:intergenic |
| TACCTTGAAGCAATCGTCAG+AGG | 0.632906 | 7_1:-4779006 | Msa1006120:CDS |
| GAGATGATGATAAAAGTGCC+CGG | 0.635263 | 7_1:+4779162 | None:intergenic |
| TACTCTAAGAAGGTTGACAA+AGG | 0.647745 | 7_1:+4776172 | None:intergenic |
| TCTATGAGGAGGAGGTCAAG+AGG | 0.648159 | 7_1:-4774053 | Msa1006120:CDS |
| GTTGTGGTATGCAATGGAGA+TGG | 0.649223 | 7_1:+4776262 | None:intergenic |
| TATGTGGATTTCAGAATGTG+TGG | 0.651939 | 7_1:-4773812 | Msa1006120:CDS |
| TGACAAGGCATTCTATGAGG+AGG | 0.653753 | 7_1:-4774064 | Msa1006120:CDS |
| AGAGAGCCAGATGCTTGACA+AGG | 0.663160 | 7_1:-4774079 | Msa1006120:CDS |
| AGCTTCGAATCCGTACATGG+TGG | 0.665678 | 7_1:+4779053 | None:intergenic |
| TGAGGAGCTTGCTGTCTGTG+AGG | 0.672675 | 7_1:-4774907 | Msa1006120:CDS |
| ATTCTGAGCAACTGCCAGAG+TGG | 0.673304 | 7_1:+4775734 | None:intergenic |
| ATGACCTTCAACATCCATGG+CGG | 0.765368 | 7_1:-4779030 | Msa1006120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATAAAATTTTTCAGA+GGG | - | chr7_1:4775573-4775592 | Msa1006120:intron | 10.0% |
| !! | ATACATTCTTAATTAAATTT+GGG | + | chr7_1:4775964-4775983 | None:intergenic | 10.0% |
| !! | CAATAAGAATAATAATAATA+AGG | + | chr7_1:4776336-4776355 | None:intergenic | 10.0% |
| !!! | TTTTAAAAATATTTAACTGA+AGG | + | chr7_1:4777673-4777692 | None:intergenic | 10.0% |
| !!! | TTTTGATAAAATTCATTGTT+TGG | - | chr7_1:4775424-4775443 | Msa1006120:CDS | 15.0% |
| !!! | CTATTTATAAAATTTTTCAG+AGG | - | chr7_1:4775572-4775591 | Msa1006120:intron | 15.0% |
| !! | GATACATTCTTAATTAAATT+TGG | + | chr7_1:4775965-4775984 | None:intergenic | 15.0% |
| !!! | AAATTATTGATTTATACTGA+TGG | - | chr7_1:4776384-4776403 | Msa1006120:intron | 15.0% |
| !!! | ATTTTACAATATATTGATGT+TGG | - | chr7_1:4776871-4776890 | Msa1006120:intron | 15.0% |
| !! | AACTAATCAAATATAAACAT+GGG | + | chr7_1:4777176-4777195 | None:intergenic | 15.0% |
| !! | AAACTAATCAAATATAAACA+TGG | + | chr7_1:4777177-4777196 | None:intergenic | 15.0% |
| !!! | TTGTTTTAATTGTGTAGATT+TGG | - | chr7_1:4773962-4773981 | Msa1006120:intron | 20.0% |
| !! | AATTTAAGTGCTTAGTTAAT+CGG | - | chr7_1:4774064-4774083 | Msa1006120:CDS | 20.0% |
| !!! | TTATTTATGCAAATTTTCAG+AGG | - | chr7_1:4775023-4775042 | Msa1006120:intron | 20.0% |
| !!! | TATTTATGCAAATTTTCAGA+GGG | - | chr7_1:4775024-4775043 | Msa1006120:intron | 20.0% |
| !!! | AAATTAAGTGCTTTTAATCT+TGG | - | chr7_1:4775653-4775672 | Msa1006120:intron | 20.0% |
| !!! | TTGAATCTTGAATTATTTTG+AGG | - | chr7_1:4775877-4775896 | Msa1006120:intron | 20.0% |
| !! | TTTAGATATTTGATCTACTT+TGG | - | chr7_1:4776133-4776152 | Msa1006120:intron | 20.0% |
| !! | TTGATGTTGAACAAAATAAA+GGG | + | chr7_1:4777082-4777101 | None:intergenic | 20.0% |
| !! | ATTGATGTTGAACAAAATAA+AGG | + | chr7_1:4777083-4777102 | None:intergenic | 20.0% |
| !! | ACTAATCAAATATAAACATG+GGG | + | chr7_1:4777175-4777194 | None:intergenic | 20.0% |
| !!! | GTATAATCTTTTTGTTTATC+TGG | - | chr7_1:4777534-4777553 | Msa1006120:intron | 20.0% |
| !!! | TTTGTAATTTTAGTTGCTTT+CGG | - | chr7_1:4778136-4778155 | Msa1006120:intron | 20.0% |
| !!! | TTTGTAATTTTAGTTGCTTT+CGG | - | chr7_1:4778136-4778155 | Msa1006120:intron | 20.0% |
| !! | AGAATATCATAATATTAAGC+TGG | - | chr7_1:4778699-4778718 | Msa1006120:intron | 20.0% |
| !! | AAAATCTTCTGTAATATAGA+TGG | - | chr7_1:4779060-4779079 | Msa1006120:exon | 20.0% |
| !! | AAATCTTCTGTAATATAGAT+GGG | - | chr7_1:4779061-4779080 | Msa1006120:exon | 20.0% |
| ! | AAATTGGATCTGAATGAATT+CGG | + | chr7_1:4773611-4773630 | None:intergenic | 25.0% |
| ! | TTTATGATTATGCGAAATTG+CGG | - | chr7_1:4773935-4773954 | Msa1006120:intron | 25.0% |
| ! | CTATGAAACACTTAGTTAAT+CGG | - | chr7_1:4774459-4774478 | Msa1006120:intron | 25.0% |
| ! | AAAACATTTCTGATTAAGTG+AGG | + | chr7_1:4774827-4774846 | None:intergenic | 25.0% |
| !!! | AGAATTATTTCTGGAAACAT+TGG | - | chr7_1:4774914-4774933 | Msa1006120:CDS | 25.0% |
| !!! | GAATTATTTCTGGAAACATT+GGG | - | chr7_1:4774915-4774934 | Msa1006120:CDS | 25.0% |
| ! | TGTAACAAAATTAACTGCTA+AGG | - | chr7_1:4775108-4775127 | Msa1006120:intron | 25.0% |
| ! | CATTTCAAATCTACAAACAA+TGG | + | chr7_1:4774886-4774905 | None:intergenic | 25.0% |
| !! | TACATAAGTTTTTCATGACA+AGG | + | chr7_1:4776074-4776093 | None:intergenic | 25.0% |
| ! | TTACTGAAGTTCACAATAAA+GGG | + | chr7_1:4776189-4776208 | None:intergenic | 25.0% |
| ! | AAGTAATTAACTACACATGA+GGG | + | chr7_1:4776614-4776633 | None:intergenic | 25.0% |
| ! | CCATTAATGATTTGAGAAAA+TGG | + | chr7_1:4776637-4776656 | None:intergenic | 25.0% |
| !! | CCATTTTCTCAAATCATTAA+TGG | - | chr7_1:4776634-4776653 | Msa1006120:intron | 25.0% |
| ! | TTCAGTATATGTGTCATATT+TGG | - | chr7_1:4776666-4776685 | Msa1006120:intron | 25.0% |
| !!! | AATTTTTTACTCTGCAGATA+TGG | - | chr7_1:4776728-4776747 | Msa1006120:intron | 25.0% |
| !!! | AATGTTGTTTTGATTGTTAC+TGG | - | chr7_1:4776764-4776783 | Msa1006120:intron | 25.0% |
| !! | AAAGGGAAACAAATATTTTC+TGG | + | chr7_1:4777065-4777084 | None:intergenic | 25.0% |
| ! | ACATGAACATTGAAATAATG+AGG | - | chr7_1:4777249-4777268 | Msa1006120:intron | 25.0% |
| ! | AAAATCTGTAAAAGTCTTCA+AGG | + | chr7_1:4777295-4777314 | None:intergenic | 25.0% |
| ! | CTGTTAATATTACCATCAAT+AGG | - | chr7_1:4777491-4777510 | Msa1006120:intron | 25.0% |
| !!! | TTGTAGATGATTCTTGTTTT+AGG | - | chr7_1:4778060-4778079 | Msa1006120:intron | 25.0% |
| !!! | TGTAGATGATTCTTGTTTTA+GGG | - | chr7_1:4778061-4778080 | Msa1006120:intron | 25.0% |
| !!! | TTGTAGATGATTCTTGTTTT+AGG | - | chr7_1:4778060-4778079 | Msa1006120:intron | 25.0% |
| !!! | TGTAGATGATTCTTGTTTTA+GGG | - | chr7_1:4778061-4778080 | Msa1006120:intron | 25.0% |
| ! | GATGAATCTCAAATATTTCA+GGG | + | chr7_1:4778434-4778453 | None:intergenic | 25.0% |
| ! | TGATGAATCTCAAATATTTC+AGG | + | chr7_1:4778435-4778454 | None:intergenic | 25.0% |
| !!! | TTAGCCTTAATTCTTTTACA+TGG | - | chr7_1:4778509-4778528 | Msa1006120:intron | 25.0% |
| ! | TATCATAATATTAAGCTGGA+AGG | - | chr7_1:4778703-4778722 | Msa1006120:intron | 25.0% |
| ! | GCATTATAGTCAAATTAGTA+TGG | + | chr7_1:4778792-4778811 | None:intergenic | 25.0% |
| !! | AAACTTTGATAGATTTGTTC+AGG | - | chr7_1:4779183-4779202 | Msa1006120:five_prime_UTR | 25.0% |
| AATTGGATCTGAATGAATTC+GGG | + | chr7_1:4773610-4773629 | None:intergenic | 30.0% | |
| ATGCATCTTGATATCATCAA+GGG | + | chr7_1:4773761-4773780 | None:intergenic | 30.0% | |
| TATGGTCCTTATCTTCAAAA+CGG | - | chr7_1:4773796-4773815 | Msa1006120:CDS | 30.0% | |
| !! | AGACATACACTTTTGATTGA+AGG | - | chr7_1:4775138-4775157 | Msa1006120:intron | 30.0% |
| !! | GACATACACTTTTGATTGAA+GGG | - | chr7_1:4775139-4775158 | Msa1006120:intron | 30.0% |
| !! | ACATACACTTTTGATTGAAG+GGG | - | chr7_1:4775140-4775159 | Msa1006120:intron | 30.0% |
| AAAATTGGCAAACCAAAAAG+TGG | + | chr7_1:4775817-4775836 | None:intergenic | 30.0% | |
| !!! | TTGGTTTGCCAATTTTGTAT+AGG | - | chr7_1:4775821-4775840 | Msa1006120:intron | 30.0% |
| TTCACAAATTGAATCTCGAT+TGG | - | chr7_1:4776037-4776056 | Msa1006120:intron | 30.0% | |
| TACTGAAGTTCACAATAAAG+GGG | + | chr7_1:4776188-4776207 | None:intergenic | 30.0% | |
| CTTACTGAAGTTCACAATAA+AGG | + | chr7_1:4776190-4776209 | None:intergenic | 30.0% | |
| !! | AAAGTTTGCTGTTATTTCTG+CGG | - | chr7_1:4776242-4776261 | Msa1006120:CDS | 30.0% |
| ! | ATACGTGATATACTCTAAGA+AGG | + | chr7_1:4776526-4776545 | None:intergenic | 30.0% |
| TATTTCCTTGAATATGTGTC+TGG | - | chr7_1:4776579-4776598 | Msa1006120:intron | 30.0% | |
| GAAGTAATTAACTACACATG+AGG | + | chr7_1:4776615-4776634 | None:intergenic | 30.0% | |
| TGTAAAATGCACAGAAATCA+GGG | + | chr7_1:4776859-4776878 | None:intergenic | 30.0% | |
| TTGTAAAATGCACAGAAATC+AGG | + | chr7_1:4776860-4776879 | None:intergenic | 30.0% | |
| !!! | TTACTTTTTTTCTTGCCTGT+TGG | - | chr7_1:4776911-4776930 | Msa1006120:intron | 30.0% |
| !!! | TACTTTTTTTCTTGCCTGTT+GGG | - | chr7_1:4776912-4776931 | Msa1006120:intron | 30.0% |
| !! | TCTTGTTTATTTCTAGGACT+TGG | - | chr7_1:4777223-4777242 | Msa1006120:intron | 30.0% |
| ! | AGACTTTTACAGATTTTGTC+AGG | - | chr7_1:4777298-4777317 | Msa1006120:intron | 30.0% |
| TAGCTGACAAAAAAGAAACT+TGG | + | chr7_1:4777343-4777362 | None:intergenic | 30.0% | |
| !! | CATTAAAGTTGATGAAAGTC+AGG | + | chr7_1:4777393-4777412 | None:intergenic | 30.0% |
| CTTAGTACTTTACCTATTGA+TGG | + | chr7_1:4777506-4777525 | None:intergenic | 30.0% | |
| TCTCAATTGTGTTAAACGTT+TGG | - | chr7_1:4777824-4777843 | Msa1006120:intron | 30.0% | |
| GAAGCATACAAATTGAAAGA+CGG | + | chr7_1:4777878-4777897 | None:intergenic | 30.0% | |
| CTTTCAATTTGTATGCTTCT+TGG | - | chr7_1:4777879-4777898 | Msa1006120:intron | 30.0% | |
| CTAAGAAACACAATCTAGAA+GGG | + | chr7_1:4777906-4777925 | None:intergenic | 30.0% | |
| CTTCTAGATTGTGTTTCTTA+GGG | - | chr7_1:4777905-4777924 | Msa1006120:intron | 30.0% | |
| TATATTATTCCTCTTATCCC+TGG | - | chr7_1:4777986-4778005 | Msa1006120:intron | 30.0% | |
| ACAAGAATCATCTACAAGTA+GGG | + | chr7_1:4778057-4778076 | None:intergenic | 30.0% | |
| AACAAGAATCATCTACAAGT+AGG | + | chr7_1:4778058-4778077 | None:intergenic | 30.0% | |
| TATATTATTCCTCTTATCCC+TGG | - | chr7_1:4777986-4778005 | Msa1006120:intron | 30.0% | |
| ACAAGAATCATCTACAAGTA+GGG | + | chr7_1:4778057-4778076 | None:intergenic | 30.0% | |
| AACAAGAATCATCTACAAGT+AGG | + | chr7_1:4778058-4778077 | None:intergenic | 30.0% | |
| TACCAATTTCTTGTTGGTAT+CGG | - | chr7_1:4778408-4778427 | Msa1006120:intron | 30.0% | |
| AGAAATCAACTAGAAATCAG+TGG | + | chr7_1:4778474-4778493 | None:intergenic | 30.0% | |
| GCAACCATGTAAAAGAATTA+AGG | + | chr7_1:4778516-4778535 | None:intergenic | 30.0% | |
| !! | TTAGCAAAGATGGATTGATA+AGG | + | chr7_1:4778574-4778593 | None:intergenic | 30.0% |
| ATACGATAACTTAGCAAAGA+TGG | + | chr7_1:4778584-4778603 | None:intergenic | 30.0% | |
| ATCTTTGCTAAGTTATCGTA+TGG | - | chr7_1:4778583-4778602 | Msa1006120:intron | 30.0% | |
| ! | TTATAGCTTGTATGTTCGTT+TGG | - | chr7_1:4778961-4778980 | Msa1006120:CDS | 30.0% |
| ACAGAGATTGTTGTAATCAG+CGG | + | chr7_1:4773728-4773747 | None:intergenic | 35.0% | |
| GATGCATCTTGATATCATCA+AGG | + | chr7_1:4773762-4773781 | None:intergenic | 35.0% | |
| TATATGCGAAATCGTGATCT+AGG | - | chr7_1:4774102-4774121 | Msa1006120:CDS | 35.0% | |
| TGTTTGACAAATGTCAGACA+CGG | - | chr7_1:4774511-4774530 | Msa1006120:intron | 35.0% | |
| ! | ACACTTTCCATCAAAAGTGT+TGG | - | chr7_1:4774537-4774556 | Msa1006120:intron | 35.0% |
| ! | TATAGCACCAACACTTTTGA+TGG | + | chr7_1:4774547-4774566 | None:intergenic | 35.0% |
| !! | ATCAAAAGTGTTGGTGCTAT+AGG | - | chr7_1:4774546-4774565 | Msa1006120:intron | 35.0% |
| !! | TCAAAAGTGTTGGTGCTATA+GGG | - | chr7_1:4774547-4774566 | Msa1006120:intron | 35.0% |
| TCTATAGAGATCACGATGTT+TGG | - | chr7_1:4774574-4774593 | Msa1006120:intron | 35.0% | |
| ! | ATCACGATGTTTGGTTTAGT+TGG | - | chr7_1:4774583-4774602 | Msa1006120:intron | 35.0% |
| AATGCTAATGACTGAACTGA+AGG | - | chr7_1:4774716-4774735 | Msa1006120:intron | 35.0% | |
| GTGATTTCGCATAATCATGA+AGG | + | chr7_1:4774856-4774875 | None:intergenic | 35.0% | |
| GCTAGCTGAAGAATTATTTC+TGG | - | chr7_1:4774905-4774924 | Msa1006120:CDS | 35.0% | |
| GGACACATCAATTACATGTT+TGG | + | chr7_1:4775252-4775271 | None:intergenic | 35.0% | |
| AGTGTCTGCCTATACAAAAT+TGG | + | chr7_1:4775832-4775851 | None:intergenic | 35.0% | |
| !! | AAGTTTGCTGTTATTTCTGC+GGG | - | chr7_1:4776243-4776262 | Msa1006120:CDS | 35.0% |
| ACAATTGTTGTGGTATGCAA+TGG | + | chr7_1:4776432-4776451 | None:intergenic | 35.0% | |
| ATTGCATACCACAACAATTG+TGG | - | chr7_1:4776431-4776450 | Msa1006120:intron | 35.0% | |
| ACATTTCTCCACAATTGTTG+TGG | + | chr7_1:4776442-4776461 | None:intergenic | 35.0% | |
| GTAATCATCAACCAGCTTAA+GGG | + | chr7_1:4776466-4776485 | None:intergenic | 35.0% | |
| TGTAATCATCAACCAGCTTA+AGG | + | chr7_1:4776467-4776486 | None:intergenic | 35.0% | |
| ! | TACTCTAAGAAGGTTGACAA+AGG | + | chr7_1:4776516-4776535 | None:intergenic | 35.0% |
| !! | GGCATTTTTCTAGAAGTTCT+TGG | + | chr7_1:4776811-4776830 | None:intergenic | 35.0% |
| TTCTTTGATGTATCTGCTCA+TGG | - | chr7_1:4777199-4777218 | Msa1006120:intron | 35.0% | |
| ! | CATGGCTCTTGTTTATTTCT+AGG | - | chr7_1:4777217-4777236 | Msa1006120:intron | 35.0% |
| AATGAGGAACACTCTTTACA+AGG | - | chr7_1:4777265-4777284 | Msa1006120:intron | 35.0% | |
| GAAACTTGGAAATCACAAAG+AGG | + | chr7_1:4777329-4777348 | None:intergenic | 35.0% | |
| !! | TAAAGTTGATGAAAGTCAGG+AGG | + | chr7_1:4777390-4777409 | None:intergenic | 35.0% |
| GTTATTCGCAAACAGAAACT+TGG | - | chr7_1:4777412-4777431 | Msa1006120:intron | 35.0% | |
| AGTTAGAGTACAACTTCCTA+CGG | + | chr7_1:4777628-4777647 | None:intergenic | 35.0% | |
| AGGAAGTTGTACTCTAACTT+CGG | - | chr7_1:4777629-4777648 | Msa1006120:intron | 35.0% | |
| GGTAGCTGTTAGAAATAAGT+TGG | + | chr7_1:4777748-4777767 | None:intergenic | 35.0% | |
| ATTTCTAACAGCTACCCATA+TGG | - | chr7_1:4777752-4777771 | Msa1006120:intron | 35.0% | |
| CCTAAGAAACACAATCTAGA+AGG | + | chr7_1:4777907-4777926 | None:intergenic | 35.0% | |
| CCTTCTAGATTGTGTTTCTT+AGG | - | chr7_1:4777904-4777923 | Msa1006120:intron | 35.0% | |
| TTTCGGCTACCAATTTCTTA+GGG | - | chr7_1:4778153-4778172 | Msa1006120:intron | 35.0% | |
| AATCTACTGCCCTAAGAAAT+TGG | + | chr7_1:4778165-4778184 | None:intergenic | 35.0% | |
| !! | CAAAGATGGATTGATAAGGA+GGG | + | chr7_1:4778570-4778589 | None:intergenic | 35.0% |
| TAAGCTGGAAGGATATTGAT+TGG | - | chr7_1:4778714-4778733 | Msa1006120:intron | 35.0% | |
| TCTTCGCATATATGAGGTTA+AGG | - | chr7_1:4778830-4778849 | Msa1006120:intron | 35.0% | |
| CTTCGCATATATGAGGTTAA+GGG | - | chr7_1:4778831-4778850 | Msa1006120:intron | 35.0% | |
| AGGAGATCAGAAATCTTATG+TGG | - | chr7_1:4778857-4778876 | Msa1006120:intron | 35.0% | |
| TATGTGGATTTCAGAATGTG+TGG | - | chr7_1:4778873-4778892 | Msa1006120:intron | 35.0% | |
| CTTCTCTAGTCTCTAATGAT+CGG | + | chr7_1:4779022-4779041 | None:intergenic | 35.0% | |
| !! | GAGATGATGATAAAAGTGCC+CGG | + | chr7_1:4773526-4773545 | None:intergenic | 40.0% |
| ATCCAATTTCCCACCATGTA+CGG | - | chr7_1:4773622-4773641 | Msa1006120:three_prime_UTR | 40.0% | |
| !!! | AACGCACCGTTTTGAAGATA+AGG | + | chr7_1:4773805-4773824 | None:intergenic | 40.0% |
| AAATCGTGATCTAGGAAGCA+CGG | - | chr7_1:4774110-4774129 | Msa1006120:CDS | 40.0% | |
| GTTTGACAAATGTCAGACAC+GGG | - | chr7_1:4774512-4774531 | Msa1006120:intron | 40.0% | |
| !!! | CTTTTGATTGAAGGGGTGTT+CGG | - | chr7_1:4775147-4775166 | Msa1006120:intron | 40.0% |
| ! | TTCTCATCGAAGGTGTATCA+TGG | + | chr7_1:4775296-4775315 | None:intergenic | 40.0% |
| TTGACAAAGGTTCTGTAGCT+TGG | + | chr7_1:4776503-4776522 | None:intergenic | 40.0% | |
| AGACACCAGACACATATTCA+AGG | + | chr7_1:4776587-4776606 | None:intergenic | 40.0% | |
| CTAGAAAAATGCCATCCACT+CGG | - | chr7_1:4776818-4776837 | Msa1006120:intron | 40.0% | |
| GTAATGCACTCAGAGAAGTA+TGG | + | chr7_1:4777022-4777041 | None:intergenic | 40.0% | |
| AAGTCAGGAGGAAATCACAA+GGG | + | chr7_1:4777378-4777397 | None:intergenic | 40.0% | |
| AAAGTCAGGAGGAAATCACA+AGG | + | chr7_1:4777379-4777398 | None:intergenic | 40.0% | |
| ATTCGCAAACAGAAACTTGG+AGG | - | chr7_1:4777415-4777434 | Msa1006120:intron | 40.0% | |
| TATCAGCCTCAAAAGCTAGA+AGG | + | chr7_1:4777465-4777484 | None:intergenic | 40.0% | |
| !!! | TAGCTTTTGAGGCTGATAGA+AGG | - | chr7_1:4777467-4777486 | Msa1006120:intron | 40.0% |
| !!! | AGCTTTTGAGGCTGATAGAA+GGG | - | chr7_1:4777468-4777487 | Msa1006120:intron | 40.0% |
| TATCTGGATATCCGCATAAC+TGG | - | chr7_1:4777550-4777569 | Msa1006120:intron | 40.0% | |
| ! | ACAGGTTTAAGGTCATGCAA+CGG | + | chr7_1:4778020-4778039 | None:intergenic | 40.0% |
| CTTTCGGCTACCAATTTCTT+AGG | - | chr7_1:4778152-4778171 | Msa1006120:intron | 40.0% | |
| ! | ACAGGTTTAAGGTCATGCAA+CGG | + | chr7_1:4778020-4778039 | None:intergenic | 40.0% |
| TTCGGCTACCAATTTCTTGT+TGG | - | chr7_1:4778402-4778421 | Msa1006120:intron | 40.0% | |
| !! | GCAAAGATGGATTGATAAGG+AGG | + | chr7_1:4778571-4778590 | None:intergenic | 40.0% |
| TTGCTTAGCATTTGAGCAAC+AGG | - | chr7_1:4778657-4778676 | Msa1006120:intron | 40.0% | |
| CTGTGTTCTTCGCATATATG+AGG | - | chr7_1:4778824-4778843 | Msa1006120:intron | 40.0% | |
| ATATATGAGGTTAAGGGAGC+AGG | - | chr7_1:4778837-4778856 | Msa1006120:intron | 40.0% | |
| !! | TCGTGTAGAAGCACTACAAC+CGG | - | chr7_1:4773504-4773523 | Msa1006120:three_prime_UTR | 45.0% |
| CATCTCCTCTCATTCTCTGA+AGG | - | chr7_1:4773540-4773559 | Msa1006120:three_prime_UTR | 45.0% | |
| TCGGGTTATGGAAATGGATC+GGG | + | chr7_1:4773587-4773606 | None:intergenic | 45.0% | |
| GTCGGGTTATGGAAATGGAT+CGG | + | chr7_1:4773588-4773607 | None:intergenic | 45.0% | |
| AATGAATTCGGGTCGGGTTA+TGG | + | chr7_1:4773599-4773618 | None:intergenic | 45.0% | |
| GATCTGAATGAATTCGGGTC+GGG | + | chr7_1:4773605-4773624 | None:intergenic | 45.0% | |
| GGATCTGAATGAATTCGGGT+CGG | + | chr7_1:4773606-4773625 | None:intergenic | 45.0% | |
| ! | ATCCGTACATGGTGGGAAAT+TGG | + | chr7_1:4773627-4773646 | None:intergenic | 45.0% |
| CATAGCTTCGAATCCGTACA+TGG | + | chr7_1:4773638-4773657 | None:intergenic | 45.0% | |
| GCTATGACCTTCAACATCCA+TGG | - | chr7_1:4773652-4773671 | Msa1006120:three_prime_UTR | 45.0% | |
| ATGACCTTCAACATCCATGG+CGG | - | chr7_1:4773655-4773674 | Msa1006120:three_prime_UTR | 45.0% | |
| TACCTTGAAGCAATCGTCAG+AGG | - | chr7_1:4773679-4773698 | Msa1006120:three_prime_UTR | 45.0% | |
| ATCAGCGGTGGTTAACAAAC+CGG | + | chr7_1:4773713-4773732 | None:intergenic | 45.0% | |
| GAGATTGTTGTAATCAGCGG+TGG | + | chr7_1:4773725-4773744 | None:intergenic | 45.0% | |
| CATCTCTCTGCTACTGAGTA+TGG | - | chr7_1:4773778-4773797 | Msa1006120:CDS | 45.0% | |
| ACATGTGTCAGTGTTGTGTC+AGG | - | chr7_1:4774210-4774229 | Msa1006120:intron | 45.0% | |
| TATCCGACACATGTCAGTGT+CGG | + | chr7_1:4775273-4775292 | None:intergenic | 45.0% | |
| GCAATGACACTTCTCATCGA+AGG | + | chr7_1:4775306-4775325 | None:intergenic | 45.0% | |
| TTGGCAAACCAAAAAGTGGC+TGG | + | chr7_1:4775813-4775832 | None:intergenic | 45.0% | |
| ! | AATGGAGATGGTTCTGCAAG+AGG | + | chr7_1:4776414-4776433 | None:intergenic | 45.0% |
| GTTGTGGTATGCAATGGAGA+TGG | + | chr7_1:4776426-4776445 | None:intergenic | 45.0% | |
| GGAGAAATGTACCCTTAAGC+TGG | - | chr7_1:4776452-4776471 | Msa1006120:intron | 45.0% | |
| TTGGACATCTCTCTCATGCA+AGG | + | chr7_1:4776792-4776811 | None:intergenic | 45.0% | |
| ATACTGAGGAGAATCCCAAC+AGG | + | chr7_1:4776929-4776948 | None:intergenic | 45.0% | |
| TGGCAGTTGCTCAGAATATG+CGG | - | chr7_1:4776957-4776976 | Msa1006120:intron | 45.0% | |
| AGAATATGCGGGAGCTTTAC+AGG | - | chr7_1:4776969-4776988 | Msa1006120:intron | 45.0% | |
| CTCTGAGTGCATTACATCTG+AGG | - | chr7_1:4777027-4777046 | Msa1006120:intron | 45.0% | |
| AGCCTCAAAAGCTAGAAGGT+CGG | + | chr7_1:4777461-4777480 | None:intergenic | 45.0% | |
| AACCATGGATGCCAGTTATG+CGG | + | chr7_1:4777564-4777583 | None:intergenic | 45.0% | |
| GTTTCCATGTTGTGCAGCAT+TGG | - | chr7_1:4777581-4777600 | Msa1006120:intron | 45.0% | |
| AGTTCCAATGCTGCACAACA+TGG | + | chr7_1:4777588-4777607 | None:intergenic | 45.0% | |
| CAAGCTCCTCATGACCATAT+GGG | + | chr7_1:4777769-4777788 | None:intergenic | 45.0% | |
| TGTCTGTGAGGACATTGATC+AGG | - | chr7_1:4777790-4777809 | Msa1006120:intron | 45.0% | |
| GCAGTTAAACCAGGGATAAG+AGG | + | chr7_1:4777998-4778017 | None:intergenic | 45.0% | |
| ATGCAACGGCAGTTAAACCA+GGG | + | chr7_1:4778006-4778025 | None:intergenic | 45.0% | |
| GCAGTTAAACCAGGGATAAG+AGG | + | chr7_1:4777998-4778017 | None:intergenic | 45.0% | |
| ATGCAACGGCAGTTAAACCA+GGG | + | chr7_1:4778006-4778025 | None:intergenic | 45.0% | |
| GGCCGATACCAACAAGAAAT+TGG | + | chr7_1:4778413-4778432 | None:intergenic | 45.0% | |
| ! | TTTTACATGGTTGCTCGCGT+AGG | - | chr7_1:4778522-4778541 | Msa1006120:intron | 45.0% |
| AGAATGCCTTGTCAAGCATC+TGG | + | chr7_1:4778615-4778634 | None:intergenic | 45.0% | |
| ! | GCTTGACAAGGCATTCTATG+AGG | - | chr7_1:4778618-4778637 | Msa1006120:intron | 45.0% |
| ! | TGACAAGGCATTCTATGAGG+AGG | - | chr7_1:4778621-4778640 | Msa1006120:intron | 45.0% |
| TCTCTAATGATCGGCAACTC+GGG | + | chr7_1:4779013-4779032 | None:intergenic | 45.0% | |
| GTCTCTAATGATCGGCAACT+CGG | + | chr7_1:4779014-4779033 | None:intergenic | 45.0% | |
| !! | CGTGTAGAAGCACTACAACC+GGG | - | chr7_1:4773505-4773524 | Msa1006120:three_prime_UTR | 50.0% |
| ! | CTCCTCTCATTCTCTGAAGG+AGG | - | chr7_1:4773543-4773562 | Msa1006120:three_prime_UTR | 50.0% |
| CACCTCCTTCAGAGAATGAG+AGG | + | chr7_1:4773548-4773567 | None:intergenic | 50.0% | |
| TTCGGGTCGGGTTATGGAAA+TGG | + | chr7_1:4773593-4773612 | None:intergenic | 50.0% | |
| GCTTCGAATCCGTACATGGT+GGG | + | chr7_1:4773634-4773653 | None:intergenic | 50.0% | |
| AGCTTCGAATCCGTACATGG+TGG | + | chr7_1:4773635-4773654 | None:intergenic | 50.0% | |
| GTAACCGCCATGGATGTTGA+AGG | + | chr7_1:4773662-4773681 | None:intergenic | 50.0% | |
| TTGCTTCAAGGTAACCGCCA+TGG | + | chr7_1:4773672-4773691 | None:intergenic | 50.0% | |
| GACCTCTGACGATTGCTTCA+AGG | + | chr7_1:4773684-4773703 | None:intergenic | 50.0% | |
| ATCGTCAGAGGTCATCGTTC+CGG | - | chr7_1:4773691-4773710 | Msa1006120:three_prime_UTR | 50.0% | |
| ! | AGAGCACTCACAGTGACATG+TGG | - | chr7_1:4774137-4774156 | Msa1006120:CDS | 50.0% |
| TCAGTGTTGTGTCAGGATCG+TGG | - | chr7_1:4774217-4774236 | Msa1006120:intron | 50.0% | |
| TGTCCGACACTGACATGTGT+CGG | - | chr7_1:4775267-4775286 | Msa1006120:intron | 50.0% | |
| !!! | TAGTGCAGCCAGCCACTTTT+TGG | - | chr7_1:4775802-4775821 | Msa1006120:intron | 50.0% |
| TGTCAAACATGCCGAGTGGA+TGG | + | chr7_1:4776832-4776851 | None:intergenic | 50.0% | |
| ATCCACTCGGCATGTTTGAC+AGG | - | chr7_1:4776831-4776850 | Msa1006120:intron | 50.0% | |
| TACCTGTCAAACATGCCGAG+TGG | + | chr7_1:4776836-4776855 | None:intergenic | 50.0% | |
| TCTCCTCAGTATTGCCACTC+TGG | - | chr7_1:4776937-4776956 | Msa1006120:intron | 50.0% | |
| ATTCTGAGCAACTGCCAGAG+TGG | + | chr7_1:4776954-4776973 | None:intergenic | 50.0% | |
| GGCAGTTGCTCAGAATATGC+GGG | - | chr7_1:4776958-4776977 | Msa1006120:intron | 50.0% | |
| GGTTCTTGTTGACACTCCTC+TGG | - | chr7_1:4776994-4777013 | Msa1006120:intron | 50.0% | |
| !!! | GTCCGACCTTCTAGCTTTTG+AGG | - | chr7_1:4777456-4777475 | Msa1006120:intron | 50.0% |
| ATCCGCATAACTGGCATCCA+TGG | - | chr7_1:4777559-4777578 | Msa1006120:intron | 50.0% | |
| GCTGCACAACATGGAAACCA+TGG | + | chr7_1:4777579-4777598 | None:intergenic | 50.0% | |
| AGCTTACCAGAGATGACCGT+AGG | - | chr7_1:4777609-4777628 | Msa1006120:intron | 50.0% | |
| CAACTTCCTACGGTCATCTC+TGG | + | chr7_1:4777618-4777637 | None:intergenic | 50.0% | |
| CAGCTACCCATATGGTCATG+AGG | - | chr7_1:4777760-4777779 | Msa1006120:intron | 50.0% | |
| GCAAGCTCCTCATGACCATA+TGG | + | chr7_1:4777770-4777789 | None:intergenic | 50.0% | |
| CATGCAACGGCAGTTAAACC+AGG | + | chr7_1:4778007-4778026 | None:intergenic | 50.0% | |
| CATGCAACGGCAGTTAAACC+AGG | + | chr7_1:4778007-4778026 | None:intergenic | 50.0% | |
| GACCTTAAACCTGTACCTCC+AGG | - | chr7_1:4778274-4778293 | Msa1006120:intron | 50.0% | |
| ! | CTCCTGGAGGTACAGGTTTA+AGG | + | chr7_1:4778279-4778298 | None:intergenic | 50.0% |
| AGAGAGCCAGATGCTTGACA+AGG | - | chr7_1:4778606-4778625 | Msa1006120:intron | 50.0% | |
| ! | CAAGGCATTCTATGAGGAGG+AGG | - | chr7_1:4778624-4778643 | Msa1006120:intron | 50.0% |
| TCTATGAGGAGGAGGTCAAG+AGG | - | chr7_1:4778632-4778651 | Msa1006120:intron | 50.0% | |
| CTGCCAGAGTGGCAATACTG+AGG | + | chr7_1:4776943-4776962 | None:intergenic | 55.0% | |
| TATGCGGGAGCTTTACAGGC+TGG | - | chr7_1:4776973-4776992 | Msa1006120:intron | 55.0% | |
| ! | TCAGAGAAGTATGGCGCCAG+AGG | + | chr7_1:4777013-4777032 | None:intergenic | 55.0% |
| !! | TGAGGAGCTTGCTGTCTGTG+AGG | - | chr7_1:4777778-4777797 | Msa1006120:intron | 55.0% |
| GACCTTAAACCTGTACCGCC+AGG | - | chr7_1:4778026-4778045 | Msa1006120:intron | 55.0% | |
| CTCCTGGCGGTACAGGTTTA+AGG | + | chr7_1:4778031-4778050 | None:intergenic | 55.0% | |
| TCTACAAGTAGGGCAGCTCC+TGG | + | chr7_1:4778047-4778066 | None:intergenic | 55.0% | |
| TCTACAAGTAGGGCAGCTCC+TGG | + | chr7_1:4778047-4778066 | None:intergenic | 55.0% | |
| ! | CGCGTAGGTTCGTGCTGTTA+TGG | - | chr7_1:4778537-4778556 | Msa1006120:intron | 55.0% |
| ACAAGTAGGGCAGCTCCTGG+CGG | + | chr7_1:4778044-4778063 | None:intergenic | 60.0% | |
| ACAAGTAGGGCAGCTCCTGG+AGG | + | chr7_1:4778044-4778063 | None:intergenic | 60.0% | |
| ! | AGGGCAGCTCCTGGAGGTAC+AGG | + | chr7_1:4778286-4778305 | None:intergenic | 65.0% |
| AGGGCAGCTCCTGGCGGTAC+AGG | + | chr7_1:4778038-4778057 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 4773494 | 4779213 | 4773494 | ID=Msa1006120;Name=Msa1006120 |
| chr7_1 | mRNA | 4773494 | 4779213 | 4773494 | ID=Msa1006120-mRNA-1;Parent=Msa1006120;Name=Msa1006120-mRNA-1;_AED=0.32;_eAED=0.32;_QI=143|0.71|0.87|1|1|1|8|268|292 |
| chr7_1 | exon | 4773494 | 4773893 | 4773494 | ID=Msa1006120-mRNA-1:exon:1602;Parent=Msa1006120-mRNA-1 |
| chr7_1 | exon | 4774029 | 4774163 | 4774029 | ID=Msa1006120-mRNA-1:exon:1601;Parent=Msa1006120-mRNA-1 |
| chr7_1 | exon | 4774896 | 4774944 | 4774896 | ID=Msa1006120-mRNA-1:exon:1600;Parent=Msa1006120-mRNA-1 |
| chr7_1 | exon | 4775195 | 4775280 | 4775195 | ID=Msa1006120-mRNA-1:exon:1599;Parent=Msa1006120-mRNA-1 |
| chr7_1 | exon | 4775388 | 4775468 | 4775388 | ID=Msa1006120-mRNA-1:exon:1598;Parent=Msa1006120-mRNA-1 |
| chr7_1 | exon | 4775659 | 4775761 | 4775659 | ID=Msa1006120-mRNA-1:exon:1597;Parent=Msa1006120-mRNA-1 |
| chr7_1 | exon | 4776175 | 4776286 | 4776175 | ID=Msa1006120-mRNA-1:exon:1596;Parent=Msa1006120-mRNA-1 |
| chr7_1 | exon | 4778890 | 4779213 | 4778890 | ID=Msa1006120-mRNA-1:exon:1595;Parent=Msa1006120-mRNA-1 |
| chr7_1 | five_prime_UTR | 4779071 | 4779213 | 4779071 | ID=Msa1006120-mRNA-1:five_prime_utr;Parent=Msa1006120-mRNA-1 |
| chr7_1 | CDS | 4778890 | 4779070 | 4778890 | ID=Msa1006120-mRNA-1:cds;Parent=Msa1006120-mRNA-1 |
| chr7_1 | CDS | 4776175 | 4776286 | 4776175 | ID=Msa1006120-mRNA-1:cds;Parent=Msa1006120-mRNA-1 |
| chr7_1 | CDS | 4775659 | 4775761 | 4775659 | ID=Msa1006120-mRNA-1:cds;Parent=Msa1006120-mRNA-1 |
| chr7_1 | CDS | 4775388 | 4775468 | 4775388 | ID=Msa1006120-mRNA-1:cds;Parent=Msa1006120-mRNA-1 |
| chr7_1 | CDS | 4775195 | 4775280 | 4775195 | ID=Msa1006120-mRNA-1:cds;Parent=Msa1006120-mRNA-1 |
| chr7_1 | CDS | 4774896 | 4774944 | 4774896 | ID=Msa1006120-mRNA-1:cds;Parent=Msa1006120-mRNA-1 |
| chr7_1 | CDS | 4774029 | 4774163 | 4774029 | ID=Msa1006120-mRNA-1:cds;Parent=Msa1006120-mRNA-1 |
| chr7_1 | CDS | 4773762 | 4773893 | 4773762 | ID=Msa1006120-mRNA-1:cds;Parent=Msa1006120-mRNA-1 |
| chr7_1 | three_prime_UTR | 4773494 | 4773761 | 4773494 | ID=Msa1006120-mRNA-1:three_prime_utr;Parent=Msa1006120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
