Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048280 | XP_003621131.1 | 100.000 | 351 | 0 | 0 | 1 | 351 | 1 | 351 | 0.0 | 734 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048280 | sp|Q9LHA4|VA0D2_ARATH | 93.732 | 351 | 22 | 0 | 1 | 351 | 1 | 351 | 0.0 | 703 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048280 | A2Q5T7 | 100.000 | 351 | 0 | 0 | 1 | 351 | 1 | 351 | 0.0 | 734 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009430 | Msa1048280 | -0.819297 | 1.250891e-52 | -8.615850e-47 |
| Msa0011170 | Msa1048280 | -0.816179 | 6.320600e-52 | -8.615850e-47 |
| Msa0024210 | Msa1048280 | 0.815384 | 9.504966e-52 | -8.615850e-47 |
| Msa0027600 | Msa1048280 | -0.812380 | 4.365111e-51 | -8.615850e-47 |
| Msa0028660 | Msa1048280 | -0.802429 | 5.634792e-49 | -8.615850e-47 |
| Msa0044330 | Msa1048280 | -0.805159 | 1.526808e-49 | -8.615850e-47 |
| Msa0057680 | Msa1048280 | 0.812186 | 4.812091e-51 | -8.615850e-47 |
| Msa0068680 | Msa1048280 | -0.815229 | 1.028936e-51 | -8.615850e-47 |
| Msa0074700 | Msa1048280 | -0.813683 | 2.260296e-51 | -8.615850e-47 |
| Msa0090360 | Msa1048280 | -0.809773 | 1.603297e-50 | -8.615850e-47 |
| Msa0091460 | Msa1048280 | -0.801829 | 7.484053e-49 | -8.615850e-47 |
| Msa0114060 | Msa1048280 | -0.825026 | 5.865721e-54 | -8.615850e-47 |
| Msa0120040 | Msa1048280 | 0.800104 | 1.685370e-48 | -8.615850e-47 |
| Msa0607050 | Msa1048280 | -0.856597 | 2.888267e-62 | -8.615850e-47 |
| Msa0610430 | Msa1048280 | -0.823234 | 1.545435e-53 | -8.615850e-47 |
| Msa0610840 | Msa1048280 | 0.813267 | 2.791383e-51 | -8.615850e-47 |
| Msa0615710 | Msa1048280 | -0.800403 | 1.465388e-48 | -8.615850e-47 |
| Msa0617640 | Msa1048280 | -0.808249 | 3.397450e-50 | -8.615850e-47 |
| Msa0627450 | Msa1048280 | -0.807564 | 4.752627e-50 | -8.615850e-47 |
| Msa0647500 | Msa1048280 | -0.804498 | 2.098688e-49 | -8.615850e-47 |
| Msa0649490 | Msa1048280 | -0.830121 | 3.510410e-55 | -8.615850e-47 |
| Msa0661190 | Msa1048280 | 0.823022 | 1.731892e-53 | -8.615850e-47 |
| Msa0663390 | Msa1048280 | -0.807874 | 4.084777e-50 | -8.615850e-47 |
| Msa0682840 | Msa1048280 | -0.810923 | 9.054955e-51 | -8.615850e-47 |
| Msa0690150 | Msa1048280 | -0.820293 | 7.405583e-53 | -8.615850e-47 |
| Msa0692040 | Msa1048280 | 0.812073 | 5.093946e-51 | -8.615850e-47 |
| Msa0695100 | Msa1048280 | -0.810675 | 1.024298e-50 | -8.615850e-47 |
| Msa0709400 | Msa1048280 | -0.846628 | 1.927041e-59 | -8.615850e-47 |
| Msa0740510 | Msa1048280 | -0.807870 | 4.092291e-50 | -8.615850e-47 |
| Msa0756540 | Msa1048280 | -0.806591 | 7.634791e-50 | -8.615850e-47 |
| Msa0796700 | Msa1048280 | -0.827045 | 1.943518e-54 | -8.615850e-47 |
| Msa0799370 | Msa1048280 | -0.806331 | 8.665257e-50 | -8.615850e-47 |
| Msa0802010 | Msa1048280 | -0.812194 | 4.793858e-51 | -8.615850e-47 |
| Msa0820770 | Msa1048280 | -0.813573 | 2.390814e-51 | -8.615850e-47 |
| Msa0820850 | Msa1048280 | -0.805601 | 1.233937e-49 | -8.615850e-47 |
| Msa0827350 | Msa1048280 | 0.841182 | 5.547298e-58 | -8.615850e-47 |
| Msa0150800 | Msa1048280 | -0.806459 | 8.142347e-50 | -8.615850e-47 |
| Msa0184040 | Msa1048280 | -0.803691 | 3.089317e-49 | -8.615850e-47 |
| Msa0205130 | Msa1048280 | -0.827894 | 1.215441e-54 | -8.615850e-47 |
| Msa0216240 | Msa1048280 | -0.804213 | 2.406532e-49 | -8.615850e-47 |
| Msa0232050 | Msa1048280 | -0.803567 | 3.277538e-49 | -8.615850e-47 |
| Msa0381610 | Msa1048280 | 0.802779 | 4.771040e-49 | -8.615850e-47 |
| Msa0383800 | Msa1048280 | -0.805102 | 1.569546e-49 | -8.615850e-47 |
| Msa0412840 | Msa1048280 | -0.809500 | 1.835440e-50 | -8.615850e-47 |
| Msa0436490 | Msa1048280 | 0.814515 | 1.481568e-51 | -8.615850e-47 |
| Msa0436760 | Msa1048280 | -0.811857 | 5.675148e-51 | -8.615850e-47 |
| Msa0477130 | Msa1048280 | 0.817968 | 2.503796e-52 | -8.615850e-47 |
| Msa0481530 | Msa1048280 | -0.800447 | 1.435402e-48 | -8.615850e-47 |
| Msa0993290 | Msa1048280 | -0.843453 | 1.388309e-58 | -8.615850e-47 |
| Msa0993600 | Msa1048280 | -0.834104 | 3.635737e-56 | -8.615850e-47 |
| Msa1006120 | Msa1048280 | 0.851632 | 7.819892e-61 | -8.615850e-47 |
| Msa1036710 | Msa1048280 | 0.823655 | 1.232550e-53 | -8.615850e-47 |
| Msa1048280 | Msa1058710 | -0.800297 | 1.539414e-48 | -8.615850e-47 |
| Msa1048280 | Msa1075540 | -0.801754 | 7.754430e-49 | -8.615850e-47 |
| Msa1048280 | Msa1083300 | -0.807539 | 4.812171e-50 | -8.615850e-47 |
| Msa1048280 | Msa1085200 | -0.814565 | 1.444023e-51 | -8.615850e-47 |
| Msa1048280 | Msa1109680 | -0.819373 | 1.201798e-52 | -8.615850e-47 |
| Msa1048280 | Msa1113170 | -0.809331 | 1.995154e-50 | -8.615850e-47 |
| Msa1048280 | Msa1124960 | -0.842709 | 2.191218e-58 | -8.615850e-47 |
| Msa1048280 | Msa1154280 | -0.802806 | 4.710632e-49 | -8.615850e-47 |
| Msa1048280 | Msa1157930 | 0.805104 | 1.568130e-49 | -8.615850e-47 |
| Msa1048280 | Msa1165920 | -0.807707 | 4.431029e-50 | -8.615850e-47 |
| Msa1048280 | Msa1167340 | -0.806317 | 8.723705e-50 | -8.615850e-47 |
| Msa1048280 | Msa1170410 | -0.803078 | 4.139376e-49 | -8.615850e-47 |
| Msa1048280 | Msa1201430 | 0.816917 | 4.319704e-52 | -8.615850e-47 |
| Msa1048280 | Msa1204090 | -0.809928 | 1.484857e-50 | -8.615850e-47 |
| Msa1048280 | Msa1244720 | 0.832559 | 8.822226e-56 | -8.615850e-47 |
| Msa1048280 | Msa1246510 | -0.806127 | 9.564264e-50 | -8.615850e-47 |
| Msa1048280 | Msa1253020 | -0.804549 | 2.047897e-49 | -8.615850e-47 |
| Msa1048280 | Msa1255330 | -0.829580 | 4.753355e-55 | -8.615850e-47 |
| Msa1048280 | Msa1282580 | 0.807702 | 4.441962e-50 | -8.615850e-47 |
| Msa1048280 | Msa1294120 | -0.809621 | 1.728043e-50 | -8.615850e-47 |
| Msa1048280 | Msa1310770 | 0.833701 | 4.583946e-56 | -8.615850e-47 |
| Msa1048280 | Msa1325860 | 0.850900 | 1.258618e-60 | -8.615850e-47 |
| Msa1048280 | Msa1327680 | -0.801563 | 8.486206e-49 | -8.615850e-47 |
| Msa1048280 | Msa1331910 | -0.804233 | 2.383904e-49 | -8.615850e-47 |
| Msa1048280 | Msa1335540 | -0.809260 | 2.065768e-50 | -8.615850e-47 |
| Msa1048280 | Msa1357620 | -0.800471 | 1.419379e-48 | -8.615850e-47 |
| Msa1048280 | Msa1359040 | -0.801567 | 8.473236e-49 | -8.615850e-47 |
| Msa1048280 | Msa1370070 | 0.836428 | 9.412469e-57 | -8.615850e-47 |
| Msa1048280 | Msa1374470 | -0.828328 | 9.554175e-55 | -8.615850e-47 |
| Msa1048280 | Msa1375840 | -0.817880 | 2.621283e-52 | -8.615850e-47 |
| Msa1048280 | Msa1377500 | -0.801805 | 7.570553e-49 | -8.615850e-47 |
| Msa1048280 | Msa1386780 | -0.800216 | 1.599178e-48 | -8.615850e-47 |
| Msa1048280 | Msa1403340 | -0.800584 | 1.345846e-48 | -8.615850e-47 |
| Msa1048280 | Msa1424450 | -0.806645 | 7.438557e-50 | -8.615850e-47 |
| Msa1048280 | Msa1432420 | -0.819757 | 9.822152e-53 | -8.615850e-47 |
| Msa1048280 | Msa1433390 | -0.812831 | 3.478417e-51 | -8.615850e-47 |
| Msa1048280 | Msa1445610 | 0.801288 | 9.664237e-49 | -8.615850e-47 |
| Msa1048280 | Msa1449340 | 0.818446 | 1.952479e-52 | -8.615850e-47 |
| Msa1048280 | Msa1451550 | -0.802078 | 6.654753e-49 | -8.615850e-47 |
| Msa1048280 | Msa1452240 | -0.809128 | 2.205482e-50 | -8.615850e-47 |
| Msa1048280 | Msa1453780 | 0.802459 | 5.553900e-49 | -8.615850e-47 |
| Msa1048280 | Msa1460050 | -0.805565 | 1.255448e-49 | -8.615850e-47 |
| Msa1048280 | Msa1466540 | -0.816272 | 6.024225e-52 | -8.615850e-47 |
| Msa0260680 | Msa1048280 | -0.831691 | 1.445755e-55 | -8.615850e-47 |
| Msa0270320 | Msa1048280 | -0.817246 | 3.642281e-52 | -8.615850e-47 |
| Msa0280090 | Msa1048280 | -0.845198 | 4.715650e-59 | -8.615850e-47 |
| Msa0286500 | Msa1048280 | -0.800564 | 1.358757e-48 | -8.615850e-47 |
| Msa0302580 | Msa1048280 | 0.811284 | 7.560259e-51 | -8.615850e-47 |
| Msa0306210 | Msa1048280 | 0.810186 | 1.306375e-50 | -8.615850e-47 |
| Msa0334360 | Msa1048280 | -0.828644 | 8.016658e-55 | -8.615850e-47 |
| Msa0484720 | Msa1048280 | -0.811070 | 8.413297e-51 | -8.615850e-47 |
| Msa0502880 | Msa1048280 | -0.810177 | 1.312109e-50 | -8.615850e-47 |
| Msa0516440 | Msa1048280 | -0.801694 | 7.979836e-49 | -8.615850e-47 |
| Msa0547320 | Msa1048280 | -0.822593 | 2.180352e-53 | -8.615850e-47 |
| Msa0563840 | Msa1048280 | -0.820409 | 6.963229e-53 | -8.615850e-47 |
| Msa0578860 | Msa1048280 | -0.800608 | 1.330807e-48 | -8.615850e-47 |
| Msa0861090 | Msa1048280 | -0.810506 | 1.114375e-50 | -8.615850e-47 |
| Msa0862110 | Msa1048280 | -0.810249 | 1.266163e-50 | -8.615850e-47 |
| Msa0880020 | Msa1048280 | -0.814481 | 1.507455e-51 | -8.615850e-47 |
| Msa0884410 | Msa1048280 | 0.811107 | 8.261332e-51 | -8.615850e-47 |
| Msa0888530 | Msa1048280 | -0.800451 | 1.432517e-48 | -8.615850e-47 |
| Msa0897330 | Msa1048280 | -0.814358 | 1.604863e-51 | -8.615850e-47 |
| Msa0909740 | Msa1048280 | -0.810372 | 1.190864e-50 | -8.615850e-47 |
| Msa0947660 | Msa1048280 | -0.813314 | 2.725470e-51 | -8.615850e-47 |
| Msa0969520 | Msa1048280 | -0.804426 | 2.173107e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048280 | MtrunA17_Chr7g0216811 | 100.000 | 351 | 0 | 0 | 1 | 351 | 1 | 351 | 0.0 | 734 |
| Msa1048280 | MtrunA17_Chr7g0216691 | 81.416 | 226 | 0 | 2 | 61 | 264 | 9 | 214 | 3.10e-125 | 358 |
| Msa1048280 | MtrunA17_Chr7g0216711 | 96.094 | 128 | 4 | 1 | 224 | 351 | 4 | 130 | 8.30e-86 | 255 |
| Msa1048280 | MtrunA17_Chr7g0216741 | 61.957 | 184 | 49 | 3 | 168 | 351 | 8 | 170 | 7.79e-67 | 208 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048280 | AT3G28715.1 | 93.732 | 351 | 22 | 0 | 1 | 351 | 1 | 351 | 0.0 | 703 |
| Msa1048280 | AT3G28710.1 | 93.447 | 351 | 23 | 0 | 1 | 351 | 1 | 351 | 0.0 | 701 |
| Msa1048280 | AT3G28715.2 | 91.168 | 351 | 23 | 1 | 1 | 351 | 1 | 343 | 0.0 | 677 |
Find 98 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATATGCGGGAGCTTTAC+AGG | 0.265424 | 7_2:+9902665 | Msa1048280:CDS |
| ATCCGTACATGGTGGGAAAT+TGG | 0.289005 | 7_2:-9899322 | None:intergenic |
| CTTAGTACTTTACCTATTGA+TGG | 0.301406 | 7_2:-9903199 | None:intergenic |
| AAAATCTTCTGTAATATAGA+TGG | 0.306956 | 7_2:+9904756 | Msa1048280:three_prime_UTR |
| TTCGGGTCGGGTTATGAAAA+TGG | 0.307268 | 7_2:-9899288 | None:intergenic |
| AAACTTTGATAGATTTGTTC+AGG | 0.335017 | 7_2:+9904879 | Msa1048280:three_prime_UTR |
| TGTAATCATCAACCAGCTTA+AGG | 0.351304 | 7_2:-9902160 | None:intergenic |
| CGCGTAGGTTCGTGCTGTTA+TGG | 0.355937 | 7_2:+9904233 | Msa1048280:intron |
| TTATAGCTTGTATGTTCGTT+TGG | 0.364191 | 7_2:+9904657 | Msa1048280:three_prime_UTR |
| CATCTCTCTGCTACTGAGTA+TGG | 0.378117 | 7_2:+9899476 | Msa1048280:CDS |
| TTGCTTAGCATTTGAGCAAC+AGG | 0.380262 | 7_2:+9904353 | Msa1048280:CDS |
| TCTTCGCATATATGAGGTTA+AGG | 0.390572 | 7_2:+9904526 | Msa1048280:CDS |
| AAATTGGATCTGAATGGATT+CGG | 0.400790 | 7_2:-9899306 | None:intergenic |
| AAAATCTGTAAAAGTCTTCA+AGG | 0.413711 | 7_2:-9902988 | None:intergenic |
| GCAAGCTCCTCATGACCATA+TGG | 0.415911 | 7_2:-9903463 | None:intergenic |
| ATCGTCAGAGGTCATCGTTC+CGG | 0.420796 | 7_2:+9899389 | Msa1048280:CDS |
| CTGTGTTCTTCGCATATATG+AGG | 0.433817 | 7_2:+9904520 | Msa1048280:CDS |
| GACCTCTGACGATTGCTTCA+AGG | 0.445385 | 7_2:-9899379 | None:intergenic |
| AATTGGATCTGAATGGATTC+GGG | 0.449878 | 7_2:-9899305 | None:intergenic |
| ATCCACTCGGCATGTTTGAC+AGG | 0.451582 | 7_2:+9902527 | Msa1048280:CDS |
| GTAATCATCAACCAGCTTAA+GGG | 0.451926 | 7_2:-9902159 | None:intergenic |
| ATACGATAACTTAGCAAAGA+TGG | 0.456824 | 7_2:-9904277 | None:intergenic |
| ATCAGCGGTGGTTAACAAAC+CGG | 0.463277 | 7_2:-9899408 | None:intergenic |
| CTTCGCATATATGAGGTTAA+GGG | 0.463671 | 7_2:+9904527 | Msa1048280:CDS |
| GATCTGAATGGATTCGGGTC+GGG | 0.465723 | 7_2:-9899300 | None:intergenic |
| ATTTCTAACAGCTACCCATA+TGG | 0.467809 | 7_2:+9903448 | Msa1048280:intron |
| TTGACAAAGGTTCTGTAGCT+TGG | 0.470359 | 7_2:-9902196 | None:intergenic |
| ATCTTTGCTAAGTTATCGTA+TGG | 0.475190 | 7_2:+9904279 | Msa1048280:CDS |
| AGAATGCCTTGTCAAGCATC+TGG | 0.476278 | 7_2:-9904308 | None:intergenic |
| GGTTCTTGTTGACACTCCTC+TGG | 0.476594 | 7_2:+9902690 | Msa1048280:CDS |
| TCTCCTCAGTATTGCCACTC+TGG | 0.481860 | 7_2:+9902633 | Msa1048280:intron |
| GTTATTCGCAAACAGAAACT+TGG | 0.488915 | 7_2:+9903108 | Msa1048280:intron |
| AGGAAGTTGTACTCTAACTT+CGG | 0.492475 | 7_2:+9903325 | Msa1048280:CDS |
| ATCCAATTTCCCACCATGTA+CGG | 0.494876 | 7_2:+9899320 | Msa1048280:exon |
| CTGTTAATATTACCATCAAT+AGG | 0.504459 | 7_2:+9903187 | Msa1048280:CDS |
| CAACTTCCTACGGTCATCTC+TGG | 0.506532 | 7_2:-9903311 | None:intergenic |
| GTAATGCACTCAGAGAAGTA+TGG | 0.507766 | 7_2:-9902715 | None:intergenic |
| ATATATGAGGTTAAGGGAGC+AGG | 0.511670 | 7_2:+9904533 | Msa1048280:CDS |
| TATCAGCCTCAAAAGCTAGA+AGG | 0.516324 | 7_2:-9903158 | None:intergenic |
| GTCTCTAATGATCGGCAACT+CGG | 0.530246 | 7_2:-9904707 | None:intergenic |
| ACATGAACATTGAAATAATG+AGG | 0.537251 | 7_2:+9902945 | Msa1048280:CDS |
| GGCAGTTGCTCAGAATATGC+GGG | 0.539064 | 7_2:+9902654 | Msa1048280:CDS |
| ACATTTCTCCACAATTGTTG+TGG | 0.543805 | 7_2:-9902135 | None:intergenic |
| TTAGCAAAGATGGATTGATA+AGG | 0.544322 | 7_2:-9904267 | None:intergenic |
| TTGGACATCTCTCTCATGCA+AGG | 0.547298 | 7_2:-9902485 | None:intergenic |
| TGTCAAACATGCCGAGTGGA+TGG | 0.549528 | 7_2:-9902525 | None:intergenic |
| TCGGGTTATGAAAATGGATC+GGG | 0.550964 | 7_2:-9899282 | None:intergenic |
| CATAGCTTCGAATCCGTACA+TGG | 0.553153 | 7_2:-9899333 | None:intergenic |
| AAATCTTCTGTAATATAGAT+GGG | 0.553782 | 7_2:+9904757 | Msa1048280:three_prime_UTR |
| ATACGTGATATACTCTAAGA+AGG | 0.558003 | 7_2:-9902219 | None:intergenic |
| GCAAAGATGGATTGATAAGG+AGG | 0.559317 | 7_2:-9904264 | None:intergenic |
| TATGCGGGAGCTTTACAGGC+TGG | 0.560140 | 7_2:+9902669 | Msa1048280:CDS |
| CTTCTCTAGTCTCTAATGAT+CGG | 0.562844 | 7_2:-9904715 | None:intergenic |
| GTCGGGTTATGAAAATGGAT+CGG | 0.564315 | 7_2:-9899283 | None:intergenic |
| GCTTGACAAGGCATTCTATG+AGG | 0.564403 | 7_2:+9904314 | Msa1048280:CDS |
| CAAGGCATTCTATGAGGAGG+AGG | 0.565752 | 7_2:+9904320 | Msa1048280:CDS |
| TATGGTCCTTATCTTCAAAA+CGG | 0.566062 | 7_2:+9899494 | Msa1048280:CDS |
| GGATCTGAATGGATTCGGGT+CGG | 0.568989 | 7_2:-9899301 | None:intergenic |
| TCAGAGAAGTATGGCGCCAG+AGG | 0.569493 | 7_2:-9902706 | None:intergenic |
| AATGAGGAACACTCTTTACA+AGG | 0.571212 | 7_2:+9902961 | Msa1048280:CDS |
| GTAACCGCCATGGATGTTGA+AGG | 0.571667 | 7_2:-9899357 | None:intergenic |
| GGTGGGAAATTGGATCTGAA+TGG | 0.571940 | 7_2:-9899312 | None:intergenic |
| CAAGCTCCTCATGACCATAT+GGG | 0.572988 | 7_2:-9903462 | None:intergenic |
| TGTCTGTGAGGACATTGATC+AGG | 0.574655 | 7_2:+9903486 | Msa1048280:CDS |
| ATTGCATACCACAACAATTG+TGG | 0.577120 | 7_2:+9902127 | Msa1048280:CDS |
| ATTCGCAAACAGAAACTTGG+AGG | 0.580049 | 7_2:+9903111 | Msa1048280:intron |
| TGGCAGTTGCTCAGAATATG+CGG | 0.580523 | 7_2:+9902653 | Msa1048280:CDS |
| CATCTCCTCTCATTATCTGA+AGG | 0.586230 | 7_2:+9899239 | Msa1048280:five_prime_UTR |
| CTCTGAGTGCATTACATCTG+AGG | 0.589763 | 7_2:+9902723 | Msa1048280:CDS |
| GCTATGACCTTCAACATCCA+TGG | 0.599491 | 7_2:+9899350 | Msa1048280:CDS |
| GTGTAGAAGCACTACAAACC+AGG | 0.601578 | 7_2:+9899198 | None:intergenic |
| GGAGAAATGTACCCTTAAGC+TGG | 0.602131 | 7_2:+9902148 | Msa1048280:CDS |
| CAAAGATGGATTGATAAGGA+GGG | 0.604520 | 7_2:-9904263 | None:intergenic |
| CTCCTCTCATTATCTGAAGG+AGG | 0.609193 | 7_2:+9899242 | Msa1048280:five_prime_UTR |
| CACCTCCTTCAGATAATGAG+AGG | 0.609233 | 7_2:-9899244 | None:intergenic |
| ATGATGATGATGAAAGTGCC+TGG | 0.610942 | 7_2:-9899216 | None:intergenic |
| GAGATTGTTGTAATCAGCGG+TGG | 0.612888 | 7_2:-9899420 | None:intergenic |
| TTGCTTCAAGGTAACCGCCA+TGG | 0.615790 | 7_2:-9899367 | None:intergenic |
| ACAGAGATTGTTGTAATCAG+CGG | 0.619922 | 7_2:-9899423 | None:intergenic |
| AGGAGATCAGAAATCTTATG+TGG | 0.620146 | 7_2:+9904553 | Msa1048280:CDS |
| ACAATTGTTGTGGTATGCAA+TGG | 0.621263 | 7_2:-9902125 | None:intergenic |
| AGTTAGAGTACAACTTCCTA+CGG | 0.623892 | 7_2:-9903321 | None:intergenic |
| GCTTCGAATCCGTACATGGT+GGG | 0.624265 | 7_2:-9899329 | None:intergenic |
| CAGCTACCCATATGGTCATG+AGG | 0.630485 | 7_2:+9903456 | Msa1048280:intron |
| AGCCTCAAAAGCTAGAAGGT+CGG | 0.630556 | 7_2:-9903154 | None:intergenic |
| TACCTTGAAGCAATCGTCAG+AGG | 0.632906 | 7_2:+9899377 | Msa1048280:CDS |
| TACTCTAAGAAGGTTGACAA+AGG | 0.647745 | 7_2:-9902209 | None:intergenic |
| TCTATGAGGAGGAGGTCAAG+AGG | 0.648159 | 7_2:+9904328 | Msa1048280:CDS |
| GTTGTGGTATGCAATGGAGA+TGG | 0.649223 | 7_2:-9902119 | None:intergenic |
| TATGTGGATTTCAGAATGTG+TGG | 0.651939 | 7_2:+9904569 | Msa1048280:CDS |
| TGACAAGGCATTCTATGAGG+AGG | 0.653753 | 7_2:+9904317 | Msa1048280:CDS |
| AGAGAGCCAGATGCTTGACA+AGG | 0.663160 | 7_2:+9904302 | Msa1048280:CDS |
| AGCTTCGAATCCGTACATGG+TGG | 0.665678 | 7_2:-9899330 | None:intergenic |
| AGCTTACCAGAGATGACCGT+AGG | 0.666935 | 7_2:+9903305 | Msa1048280:CDS |
| TGAGGAGCTTGCTGTCTGTG+AGG | 0.672675 | 7_2:+9903474 | Msa1048280:CDS |
| ATTCTGAGCAACTGCCAGAG+TGG | 0.673304 | 7_2:-9902647 | None:intergenic |
| TACCTGTCAAACATGCCGAG+TGG | 0.699028 | 7_2:-9902529 | None:intergenic |
| ATGACCTTCAACATCCATGG+CGG | 0.765368 | 7_2:+9899353 | Msa1048280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATAAAATTTTTCAGA+GGG | + | chr7_2:9901269-9901288 | Msa1048280:intron | 10.0% |
| !! | ATACATTCTTAATTAAATTT+GGG | - | chr7_2:9901660-9901679 | None:intergenic | 10.0% |
| !! | CAATAAGAATAATAATAATA+AGG | - | chr7_2:9902032-9902051 | None:intergenic | 10.0% |
| !!! | TTTTAAAAATATTTAACTGA+AGG | - | chr7_2:9903369-9903388 | None:intergenic | 10.0% |
| !!! | TTTTGATAAAATTCATTGTT+TGG | + | chr7_2:9901120-9901139 | Msa1048280:intron | 15.0% |
| !!! | CTATTTATAAAATTTTTCAG+AGG | + | chr7_2:9901268-9901287 | Msa1048280:intron | 15.0% |
| !! | GATACATTCTTAATTAAATT+TGG | - | chr7_2:9901661-9901680 | None:intergenic | 15.0% |
| !!! | AAATTATTGATTTATACTGA+TGG | + | chr7_2:9902080-9902099 | Msa1048280:intron | 15.0% |
| !!! | ATTTTACAATATATTGATGT+TGG | + | chr7_2:9902567-9902586 | Msa1048280:intron | 15.0% |
| !! | AACTAATCAAATATAAACAT+GGG | - | chr7_2:9902872-9902891 | None:intergenic | 15.0% |
| !! | AAACTAATCAAATATAAACA+TGG | - | chr7_2:9902873-9902892 | None:intergenic | 15.0% |
| !! | AATTTAAGTGCTTAGTTAAT+CGG | + | chr7_2:9899760-9899779 | Msa1048280:intron | 20.0% |
| !!! | TTATTTATGCAAATTTTCAG+AGG | + | chr7_2:9900719-9900738 | Msa1048280:intron | 20.0% |
| !!! | TATTTATGCAAATTTTCAGA+GGG | + | chr7_2:9900720-9900739 | Msa1048280:intron | 20.0% |
| !!! | AAATTAAGTGCTTTTAATCT+TGG | + | chr7_2:9901349-9901368 | Msa1048280:intron | 20.0% |
| !!! | TTGAATCTTGAATTATTTTG+AGG | + | chr7_2:9901573-9901592 | Msa1048280:intron | 20.0% |
| !! | TTTAGATATTTGATCTACTT+TGG | + | chr7_2:9901829-9901848 | Msa1048280:intron | 20.0% |
| !! | TTGATGTTGAACAAAATAAA+GGG | - | chr7_2:9902778-9902797 | None:intergenic | 20.0% |
| !! | ATTGATGTTGAACAAAATAA+AGG | - | chr7_2:9902779-9902798 | None:intergenic | 20.0% |
| !! | ACTAATCAAATATAAACATG+GGG | - | chr7_2:9902871-9902890 | None:intergenic | 20.0% |
| !!! | GTATAATCTTTTTGTTTATC+TGG | + | chr7_2:9903230-9903249 | Msa1048280:intron | 20.0% |
| !!! | TTTGTAATTTTAGTTGCTTT+CGG | + | chr7_2:9903832-9903851 | Msa1048280:intron | 20.0% |
| !!! | TTTGTAATTTTAGTTGCTTT+CGG | + | chr7_2:9903832-9903851 | Msa1048280:intron | 20.0% |
| !! | AGAATATCATAATATTAAGC+TGG | + | chr7_2:9904395-9904414 | Msa1048280:intron | 20.0% |
| !! | AAAATCTTCTGTAATATAGA+TGG | + | chr7_2:9904756-9904775 | Msa1048280:three_prime_UTR | 20.0% |
| !! | AAATCTTCTGTAATATAGAT+GGG | + | chr7_2:9904757-9904776 | Msa1048280:three_prime_UTR | 20.0% |
| ! | TTTATGATTATGCGAAATCA+CGG | + | chr7_2:9899632-9899651 | Msa1048280:intron | 25.0% |
| !!! | CGGTATTTTGTTTTAATTGT+TGG | + | chr7_2:9899652-9899671 | Msa1048280:intron | 25.0% |
| !!! | GTTTTAATTGTTGGTAGATT+TGG | + | chr7_2:9899661-9899680 | Msa1048280:intron | 25.0% |
| ! | CTATGAAACACTTAGTTAAT+CGG | + | chr7_2:9900155-9900174 | Msa1048280:intron | 25.0% |
| ! | AAAACATTTCTGATTAAGTG+AGG | - | chr7_2:9900523-9900542 | None:intergenic | 25.0% |
| !!! | AGAATTATTTCTGGAAACAT+TGG | + | chr7_2:9900610-9900629 | Msa1048280:intron | 25.0% |
| !!! | GAATTATTTCTGGAAACATT+GGG | + | chr7_2:9900611-9900630 | Msa1048280:intron | 25.0% |
| ! | TGTAACAAAATTAACTGCTA+AGG | + | chr7_2:9900804-9900823 | Msa1048280:intron | 25.0% |
| ! | CATTTCAAATCTACAAACAA+TGG | - | chr7_2:9900582-9900601 | None:intergenic | 25.0% |
| !! | TACATAAGTTTTTCATGACA+AGG | - | chr7_2:9901770-9901789 | None:intergenic | 25.0% |
| ! | TTACTGAAGTTCACAATAAA+GGG | - | chr7_2:9901885-9901904 | None:intergenic | 25.0% |
| ! | AAGTAATTAACTACACATGA+GGG | - | chr7_2:9902310-9902329 | None:intergenic | 25.0% |
| ! | CCATTAATGATTTGAGAAAA+TGG | - | chr7_2:9902333-9902352 | None:intergenic | 25.0% |
| !! | CCATTTTCTCAAATCATTAA+TGG | + | chr7_2:9902330-9902349 | Msa1048280:intron | 25.0% |
| ! | TTCAGTATATGTGTCATATT+TGG | + | chr7_2:9902362-9902381 | Msa1048280:intron | 25.0% |
| !!! | AATTTTTTACTCTGCAGATA+TGG | + | chr7_2:9902424-9902443 | Msa1048280:intron | 25.0% |
| !!! | AATGTTGTTTTGATTGTTAC+TGG | + | chr7_2:9902460-9902479 | Msa1048280:CDS | 25.0% |
| !! | AAAGGGAAACAAATATTTTC+TGG | - | chr7_2:9902761-9902780 | None:intergenic | 25.0% |
| ! | ACATGAACATTGAAATAATG+AGG | + | chr7_2:9902945-9902964 | Msa1048280:CDS | 25.0% |
| ! | AAAATCTGTAAAAGTCTTCA+AGG | - | chr7_2:9902991-9903010 | None:intergenic | 25.0% |
| ! | CTGTTAATATTACCATCAAT+AGG | + | chr7_2:9903187-9903206 | Msa1048280:CDS | 25.0% |
| !!! | TTGTAGATGATTCTTGTTTT+AGG | + | chr7_2:9903756-9903775 | Msa1048280:intron | 25.0% |
| !!! | TGTAGATGATTCTTGTTTTA+GGG | + | chr7_2:9903757-9903776 | Msa1048280:intron | 25.0% |
| !!! | TTGTAGATGATTCTTGTTTT+AGG | + | chr7_2:9903756-9903775 | Msa1048280:intron | 25.0% |
| !!! | TGTAGATGATTCTTGTTTTA+GGG | + | chr7_2:9903757-9903776 | Msa1048280:intron | 25.0% |
| ! | GATGAATCTCAAATATTTCA+GGG | - | chr7_2:9904130-9904149 | None:intergenic | 25.0% |
| ! | TGATGAATCTCAAATATTTC+AGG | - | chr7_2:9904131-9904150 | None:intergenic | 25.0% |
| !!! | TTAGCCTTAATTCTTTTACA+TGG | + | chr7_2:9904205-9904224 | Msa1048280:intron | 25.0% |
| ! | TATCATAATATTAAGCTGGA+AGG | + | chr7_2:9904399-9904418 | Msa1048280:intron | 25.0% |
| ! | GCATTATAGTCAAATTAGTA+TGG | - | chr7_2:9904488-9904507 | None:intergenic | 25.0% |
| !! | AAACTTTGATAGATTTGTTC+AGG | + | chr7_2:9904879-9904898 | Msa1048280:three_prime_UTR | 25.0% |
| ! | AAATTGGATCTGAATGGATT+CGG | - | chr7_2:9899309-9899328 | None:intergenic | 30.0% |
| TATGGTCCTTATCTTCAAAA+CGG | + | chr7_2:9899494-9899513 | Msa1048280:CDS | 30.0% | |
| !! | AGACATACACTTTTGATTGA+AGG | + | chr7_2:9900834-9900853 | Msa1048280:intron | 30.0% |
| !! | GACATACACTTTTGATTGAA+GGG | + | chr7_2:9900835-9900854 | Msa1048280:intron | 30.0% |
| !! | ACATACACTTTTGATTGAAG+GGG | + | chr7_2:9900836-9900855 | Msa1048280:intron | 30.0% |
| AAAATTGGCAAACCAAAAAG+TGG | - | chr7_2:9901513-9901532 | None:intergenic | 30.0% | |
| !!! | TTGGTTTGCCAATTTTGTAT+AGG | + | chr7_2:9901517-9901536 | Msa1048280:intron | 30.0% |
| TTCACAAATTGAATCTCGAT+TGG | + | chr7_2:9901733-9901752 | Msa1048280:intron | 30.0% | |
| TACTGAAGTTCACAATAAAG+GGG | - | chr7_2:9901884-9901903 | None:intergenic | 30.0% | |
| CTTACTGAAGTTCACAATAA+AGG | - | chr7_2:9901886-9901905 | None:intergenic | 30.0% | |
| !! | AAAGTTTGCTGTTATTTCTG+CGG | + | chr7_2:9901938-9901957 | Msa1048280:intron | 30.0% |
| ! | ATACGTGATATACTCTAAGA+AGG | - | chr7_2:9902222-9902241 | None:intergenic | 30.0% |
| TATTTCCTTGAATATGTGTC+TGG | + | chr7_2:9902275-9902294 | Msa1048280:intron | 30.0% | |
| GAAGTAATTAACTACACATG+AGG | - | chr7_2:9902311-9902330 | None:intergenic | 30.0% | |
| TGTAAAATGCACAGAAATCA+GGG | - | chr7_2:9902555-9902574 | None:intergenic | 30.0% | |
| TTGTAAAATGCACAGAAATC+AGG | - | chr7_2:9902556-9902575 | None:intergenic | 30.0% | |
| !!! | TTACTTTTTTTCTTGCCTGT+TGG | + | chr7_2:9902607-9902626 | Msa1048280:intron | 30.0% |
| !!! | TACTTTTTTTCTTGCCTGTT+GGG | + | chr7_2:9902608-9902627 | Msa1048280:intron | 30.0% |
| !! | TCTTGTTTATTTCTAGGACT+TGG | + | chr7_2:9902919-9902938 | Msa1048280:intron | 30.0% |
| ! | AGACTTTTACAGATTTTGTC+AGG | + | chr7_2:9902994-9903013 | Msa1048280:CDS | 30.0% |
| TAGCTGACAAAAAAGAAACT+TGG | - | chr7_2:9903039-9903058 | None:intergenic | 30.0% | |
| !! | CATTAAAGTTGATGAAAGTC+AGG | - | chr7_2:9903089-9903108 | None:intergenic | 30.0% |
| CTTAGTACTTTACCTATTGA+TGG | - | chr7_2:9903202-9903221 | None:intergenic | 30.0% | |
| TCTCAATTGTGTTAAACGTT+TGG | + | chr7_2:9903520-9903539 | Msa1048280:intron | 30.0% | |
| GAAGCATACAAATTGAAAGA+CGG | - | chr7_2:9903574-9903593 | None:intergenic | 30.0% | |
| CTTTCAATTTGTATGCTTCT+TGG | + | chr7_2:9903575-9903594 | Msa1048280:intron | 30.0% | |
| CTAAGAAACACAATCTAGAA+GGG | - | chr7_2:9903602-9903621 | None:intergenic | 30.0% | |
| CTTCTAGATTGTGTTTCTTA+GGG | + | chr7_2:9903601-9903620 | Msa1048280:intron | 30.0% | |
| TATATTATTCCTCTTATCCC+TGG | + | chr7_2:9903682-9903701 | Msa1048280:intron | 30.0% | |
| ACAAGAATCATCTACAAGTA+GGG | - | chr7_2:9903753-9903772 | None:intergenic | 30.0% | |
| AACAAGAATCATCTACAAGT+AGG | - | chr7_2:9903754-9903773 | None:intergenic | 30.0% | |
| TATATTATTCCTCTTATCCC+TGG | + | chr7_2:9903682-9903701 | Msa1048280:intron | 30.0% | |
| ACAAGAATCATCTACAAGTA+GGG | - | chr7_2:9903753-9903772 | None:intergenic | 30.0% | |
| AACAAGAATCATCTACAAGT+AGG | - | chr7_2:9903754-9903773 | None:intergenic | 30.0% | |
| TACCAATTTCTTGTTGGTAT+CGG | + | chr7_2:9904104-9904123 | Msa1048280:intron | 30.0% | |
| AGAAATCAACTAGAAATCAG+TGG | - | chr7_2:9904170-9904189 | None:intergenic | 30.0% | |
| GCAACCATGTAAAAGAATTA+AGG | - | chr7_2:9904212-9904231 | None:intergenic | 30.0% | |
| !! | TTAGCAAAGATGGATTGATA+AGG | - | chr7_2:9904270-9904289 | None:intergenic | 30.0% |
| ATACGATAACTTAGCAAAGA+TGG | - | chr7_2:9904280-9904299 | None:intergenic | 30.0% | |
| ATCTTTGCTAAGTTATCGTA+TGG | + | chr7_2:9904279-9904298 | Msa1048280:CDS | 30.0% | |
| ! | TTATAGCTTGTATGTTCGTT+TGG | + | chr7_2:9904657-9904676 | Msa1048280:three_prime_UTR | 30.0% |
| ! | AATTGGATCTGAATGGATTC+GGG | - | chr7_2:9899308-9899327 | None:intergenic | 35.0% |
| ACAGAGATTGTTGTAATCAG+CGG | - | chr7_2:9899426-9899445 | None:intergenic | 35.0% | |
| TATATGCGAAATCGTGATCT+AGG | + | chr7_2:9899798-9899817 | Msa1048280:intron | 35.0% | |
| TGTTTGACAAATGTCAGACA+CGG | + | chr7_2:9900207-9900226 | Msa1048280:intron | 35.0% | |
| ! | ACACTTTCCATCAAAAGTGT+TGG | + | chr7_2:9900233-9900252 | Msa1048280:intron | 35.0% |
| ! | TATAGCACCAACACTTTTGA+TGG | - | chr7_2:9900243-9900262 | None:intergenic | 35.0% |
| !! | ATCAAAAGTGTTGGTGCTAT+AGG | + | chr7_2:9900242-9900261 | Msa1048280:intron | 35.0% |
| !! | TCAAAAGTGTTGGTGCTATA+GGG | + | chr7_2:9900243-9900262 | Msa1048280:intron | 35.0% |
| TCTATAGAGATCACGATGTT+TGG | + | chr7_2:9900270-9900289 | Msa1048280:intron | 35.0% | |
| ! | ATCACGATGTTTGGTTTAGT+TGG | + | chr7_2:9900279-9900298 | Msa1048280:intron | 35.0% |
| AATGCTAATGACTGAACTGA+AGG | + | chr7_2:9900412-9900431 | Msa1048280:intron | 35.0% | |
| GTGATTTCGCATAATCATGA+AGG | - | chr7_2:9900552-9900571 | None:intergenic | 35.0% | |
| GCTAGCTGAAGAATTATTTC+TGG | + | chr7_2:9900601-9900620 | Msa1048280:intron | 35.0% | |
| GGACACATCAATTACATGTT+TGG | - | chr7_2:9900948-9900967 | None:intergenic | 35.0% | |
| AGTGTCTGCCTATACAAAAT+TGG | - | chr7_2:9901528-9901547 | None:intergenic | 35.0% | |
| !! | AAGTTTGCTGTTATTTCTGC+GGG | + | chr7_2:9901939-9901958 | Msa1048280:intron | 35.0% |
| ACAATTGTTGTGGTATGCAA+TGG | - | chr7_2:9902128-9902147 | None:intergenic | 35.0% | |
| ATTGCATACCACAACAATTG+TGG | + | chr7_2:9902127-9902146 | Msa1048280:CDS | 35.0% | |
| ACATTTCTCCACAATTGTTG+TGG | - | chr7_2:9902138-9902157 | None:intergenic | 35.0% | |
| GTAATCATCAACCAGCTTAA+GGG | - | chr7_2:9902162-9902181 | None:intergenic | 35.0% | |
| TGTAATCATCAACCAGCTTA+AGG | - | chr7_2:9902163-9902182 | None:intergenic | 35.0% | |
| ! | TACTCTAAGAAGGTTGACAA+AGG | - | chr7_2:9902212-9902231 | None:intergenic | 35.0% |
| !! | GGCATTTTTCTAGAAGTTCT+TGG | - | chr7_2:9902507-9902526 | None:intergenic | 35.0% |
| TTCTTTGATGTATCTGCTCA+TGG | + | chr7_2:9902895-9902914 | Msa1048280:intron | 35.0% | |
| ! | CATGGCTCTTGTTTATTTCT+AGG | + | chr7_2:9902913-9902932 | Msa1048280:intron | 35.0% |
| AATGAGGAACACTCTTTACA+AGG | + | chr7_2:9902961-9902980 | Msa1048280:CDS | 35.0% | |
| GAAACTTGGAAATCACAAAG+AGG | - | chr7_2:9903025-9903044 | None:intergenic | 35.0% | |
| !! | TAAAGTTGATGAAAGTCAGG+AGG | - | chr7_2:9903086-9903105 | None:intergenic | 35.0% |
| GTTATTCGCAAACAGAAACT+TGG | + | chr7_2:9903108-9903127 | Msa1048280:intron | 35.0% | |
| AGTTAGAGTACAACTTCCTA+CGG | - | chr7_2:9903324-9903343 | None:intergenic | 35.0% | |
| AGGAAGTTGTACTCTAACTT+CGG | + | chr7_2:9903325-9903344 | Msa1048280:CDS | 35.0% | |
| GGTAGCTGTTAGAAATAAGT+TGG | - | chr7_2:9903444-9903463 | None:intergenic | 35.0% | |
| ATTTCTAACAGCTACCCATA+TGG | + | chr7_2:9903448-9903467 | Msa1048280:intron | 35.0% | |
| CCTAAGAAACACAATCTAGA+AGG | - | chr7_2:9903603-9903622 | None:intergenic | 35.0% | |
| CCTTCTAGATTGTGTTTCTT+AGG | + | chr7_2:9903600-9903619 | Msa1048280:intron | 35.0% | |
| TTTCGGCTACCAATTTCTTA+GGG | + | chr7_2:9903849-9903868 | Msa1048280:intron | 35.0% | |
| AATCTACTGCCCTAAGAAAT+TGG | - | chr7_2:9903861-9903880 | None:intergenic | 35.0% | |
| !! | CAAAGATGGATTGATAAGGA+GGG | - | chr7_2:9904266-9904285 | None:intergenic | 35.0% |
| TAAGCTGGAAGGATATTGAT+TGG | + | chr7_2:9904410-9904429 | Msa1048280:intron | 35.0% | |
| TCTTCGCATATATGAGGTTA+AGG | + | chr7_2:9904526-9904545 | Msa1048280:CDS | 35.0% | |
| CTTCGCATATATGAGGTTAA+GGG | + | chr7_2:9904527-9904546 | Msa1048280:CDS | 35.0% | |
| AGGAGATCAGAAATCTTATG+TGG | + | chr7_2:9904553-9904572 | Msa1048280:CDS | 35.0% | |
| TATGTGGATTTCAGAATGTG+TGG | + | chr7_2:9904569-9904588 | Msa1048280:CDS | 35.0% | |
| CTTCTCTAGTCTCTAATGAT+CGG | - | chr7_2:9904718-9904737 | None:intergenic | 35.0% | |
| !! | ATGATGATGATGAAAGTGCC+TGG | - | chr7_2:9899219-9899238 | None:intergenic | 40.0% |
| CATCTCCTCTCATTATCTGA+AGG | + | chr7_2:9899239-9899258 | Msa1048280:five_prime_UTR | 40.0% | |
| TCGGGTTATGAAAATGGATC+GGG | - | chr7_2:9899285-9899304 | None:intergenic | 40.0% | |
| GTCGGGTTATGAAAATGGAT+CGG | - | chr7_2:9899286-9899305 | None:intergenic | 40.0% | |
| ATCCAATTTCCCACCATGTA+CGG | + | chr7_2:9899320-9899339 | Msa1048280:exon | 40.0% | |
| !!! | AACGCACCGTTTTGAAGATA+AGG | - | chr7_2:9899503-9899522 | None:intergenic | 40.0% |
| AAATCGTGATCTAGGAAGCA+CGG | + | chr7_2:9899806-9899825 | Msa1048280:intron | 40.0% | |
| GTTTGACAAATGTCAGACAC+GGG | + | chr7_2:9900208-9900227 | Msa1048280:intron | 40.0% | |
| !!! | CTTTTGATTGAAGGGGTGTT+CGG | + | chr7_2:9900843-9900862 | Msa1048280:intron | 40.0% |
| ! | TTCTCATCGAAGGTGTATCA+TGG | - | chr7_2:9900992-9901011 | None:intergenic | 40.0% |
| TTGACAAAGGTTCTGTAGCT+TGG | - | chr7_2:9902199-9902218 | None:intergenic | 40.0% | |
| AGACACCAGACACATATTCA+AGG | - | chr7_2:9902283-9902302 | None:intergenic | 40.0% | |
| CTAGAAAAATGCCATCCACT+CGG | + | chr7_2:9902514-9902533 | Msa1048280:CDS | 40.0% | |
| GTAATGCACTCAGAGAAGTA+TGG | - | chr7_2:9902718-9902737 | None:intergenic | 40.0% | |
| AAGTCAGGAGGAAATCACAA+GGG | - | chr7_2:9903074-9903093 | None:intergenic | 40.0% | |
| AAAGTCAGGAGGAAATCACA+AGG | - | chr7_2:9903075-9903094 | None:intergenic | 40.0% | |
| ATTCGCAAACAGAAACTTGG+AGG | + | chr7_2:9903111-9903130 | Msa1048280:intron | 40.0% | |
| TATCAGCCTCAAAAGCTAGA+AGG | - | chr7_2:9903161-9903180 | None:intergenic | 40.0% | |
| !!! | TAGCTTTTGAGGCTGATAGA+AGG | + | chr7_2:9903163-9903182 | Msa1048280:CDS | 40.0% |
| !!! | AGCTTTTGAGGCTGATAGAA+GGG | + | chr7_2:9903164-9903183 | Msa1048280:CDS | 40.0% |
| TATCTGGATATCCGCATAAC+TGG | + | chr7_2:9903246-9903265 | Msa1048280:intron | 40.0% | |
| ! | ACAGGTTTAAGGTCATGCAA+CGG | - | chr7_2:9903716-9903735 | None:intergenic | 40.0% |
| CTTTCGGCTACCAATTTCTT+AGG | + | chr7_2:9903848-9903867 | Msa1048280:intron | 40.0% | |
| ! | ACAGGTTTAAGGTCATGCAA+CGG | - | chr7_2:9903716-9903735 | None:intergenic | 40.0% |
| TTCGGCTACCAATTTCTTGT+TGG | + | chr7_2:9904098-9904117 | Msa1048280:intron | 40.0% | |
| !! | GCAAAGATGGATTGATAAGG+AGG | - | chr7_2:9904267-9904286 | None:intergenic | 40.0% |
| TTGCTTAGCATTTGAGCAAC+AGG | + | chr7_2:9904353-9904372 | Msa1048280:CDS | 40.0% | |
| CTGTGTTCTTCGCATATATG+AGG | + | chr7_2:9904520-9904539 | Msa1048280:CDS | 40.0% | |
| ATATATGAGGTTAAGGGAGC+AGG | + | chr7_2:9904533-9904552 | Msa1048280:CDS | 40.0% | |
| CTCCTCTCATTATCTGAAGG+AGG | + | chr7_2:9899242-9899261 | Msa1048280:five_prime_UTR | 45.0% | |
| CACCTCCTTCAGATAATGAG+AGG | - | chr7_2:9899247-9899266 | None:intergenic | 45.0% | |
| TTCGGGTCGGGTTATGAAAA+TGG | - | chr7_2:9899291-9899310 | None:intergenic | 45.0% | |
| GGTGGGAAATTGGATCTGAA+TGG | - | chr7_2:9899315-9899334 | None:intergenic | 45.0% | |
| ! | ATCCGTACATGGTGGGAAAT+TGG | - | chr7_2:9899325-9899344 | None:intergenic | 45.0% |
| CATAGCTTCGAATCCGTACA+TGG | - | chr7_2:9899336-9899355 | None:intergenic | 45.0% | |
| GCTATGACCTTCAACATCCA+TGG | + | chr7_2:9899350-9899369 | Msa1048280:CDS | 45.0% | |
| ATGACCTTCAACATCCATGG+CGG | + | chr7_2:9899353-9899372 | Msa1048280:CDS | 45.0% | |
| TACCTTGAAGCAATCGTCAG+AGG | + | chr7_2:9899377-9899396 | Msa1048280:CDS | 45.0% | |
| ATCAGCGGTGGTTAACAAAC+CGG | - | chr7_2:9899411-9899430 | None:intergenic | 45.0% | |
| GAGATTGTTGTAATCAGCGG+TGG | - | chr7_2:9899423-9899442 | None:intergenic | 45.0% | |
| CATCTCTCTGCTACTGAGTA+TGG | + | chr7_2:9899476-9899495 | Msa1048280:CDS | 45.0% | |
| ACATGTGTCAGTGTTGTGTC+AGG | + | chr7_2:9899906-9899925 | Msa1048280:intron | 45.0% | |
| TATCCGACACATGTCAGTGT+CGG | - | chr7_2:9900969-9900988 | None:intergenic | 45.0% | |
| GCAATGACACTTCTCATCGA+AGG | - | chr7_2:9901002-9901021 | None:intergenic | 45.0% | |
| TTGGCAAACCAAAAAGTGGC+TGG | - | chr7_2:9901509-9901528 | None:intergenic | 45.0% | |
| ! | AATGGAGATGGTTCTGCAAG+AGG | - | chr7_2:9902110-9902129 | None:intergenic | 45.0% |
| GTTGTGGTATGCAATGGAGA+TGG | - | chr7_2:9902122-9902141 | None:intergenic | 45.0% | |
| GGAGAAATGTACCCTTAAGC+TGG | + | chr7_2:9902148-9902167 | Msa1048280:CDS | 45.0% | |
| TTGGACATCTCTCTCATGCA+AGG | - | chr7_2:9902488-9902507 | None:intergenic | 45.0% | |
| ATACTGAGGAGAATCCCAAC+AGG | - | chr7_2:9902625-9902644 | None:intergenic | 45.0% | |
| TGGCAGTTGCTCAGAATATG+CGG | + | chr7_2:9902653-9902672 | Msa1048280:CDS | 45.0% | |
| AGAATATGCGGGAGCTTTAC+AGG | + | chr7_2:9902665-9902684 | Msa1048280:CDS | 45.0% | |
| CTCTGAGTGCATTACATCTG+AGG | + | chr7_2:9902723-9902742 | Msa1048280:CDS | 45.0% | |
| AGCCTCAAAAGCTAGAAGGT+CGG | - | chr7_2:9903157-9903176 | None:intergenic | 45.0% | |
| AACCATGGATGCCAGTTATG+CGG | - | chr7_2:9903260-9903279 | None:intergenic | 45.0% | |
| GTTTCCATGTTGTGCAGCAT+TGG | + | chr7_2:9903277-9903296 | Msa1048280:intron | 45.0% | |
| AGTTCCAATGCTGCACAACA+TGG | - | chr7_2:9903284-9903303 | None:intergenic | 45.0% | |
| CAAGCTCCTCATGACCATAT+GGG | - | chr7_2:9903465-9903484 | None:intergenic | 45.0% | |
| TGTCTGTGAGGACATTGATC+AGG | + | chr7_2:9903486-9903505 | Msa1048280:CDS | 45.0% | |
| GCAGTTAAACCAGGGATAAG+AGG | - | chr7_2:9903694-9903713 | None:intergenic | 45.0% | |
| ATGCAACGGCAGTTAAACCA+GGG | - | chr7_2:9903702-9903721 | None:intergenic | 45.0% | |
| GCAGTTAAACCAGGGATAAG+AGG | - | chr7_2:9903694-9903713 | None:intergenic | 45.0% | |
| ATGCAACGGCAGTTAAACCA+GGG | - | chr7_2:9903702-9903721 | None:intergenic | 45.0% | |
| GGCCGATACCAACAAGAAAT+TGG | - | chr7_2:9904109-9904128 | None:intergenic | 45.0% | |
| ! | TTTTACATGGTTGCTCGCGT+AGG | + | chr7_2:9904218-9904237 | Msa1048280:intron | 45.0% |
| AGAATGCCTTGTCAAGCATC+TGG | - | chr7_2:9904311-9904330 | None:intergenic | 45.0% | |
| ! | GCTTGACAAGGCATTCTATG+AGG | + | chr7_2:9904314-9904333 | Msa1048280:CDS | 45.0% |
| ! | TGACAAGGCATTCTATGAGG+AGG | + | chr7_2:9904317-9904336 | Msa1048280:CDS | 45.0% |
| TCTCTAATGATCGGCAACTC+GGG | - | chr7_2:9904709-9904728 | None:intergenic | 45.0% | |
| GTCTCTAATGATCGGCAACT+CGG | - | chr7_2:9904710-9904729 | None:intergenic | 45.0% | |
| ! | GATCTGAATGGATTCGGGTC+GGG | - | chr7_2:9899303-9899322 | None:intergenic | 50.0% |
| ! | GGATCTGAATGGATTCGGGT+CGG | - | chr7_2:9899304-9899323 | None:intergenic | 50.0% |
| GCTTCGAATCCGTACATGGT+GGG | - | chr7_2:9899332-9899351 | None:intergenic | 50.0% | |
| AGCTTCGAATCCGTACATGG+TGG | - | chr7_2:9899333-9899352 | None:intergenic | 50.0% | |
| GTAACCGCCATGGATGTTGA+AGG | - | chr7_2:9899360-9899379 | None:intergenic | 50.0% | |
| TTGCTTCAAGGTAACCGCCA+TGG | - | chr7_2:9899370-9899389 | None:intergenic | 50.0% | |
| GACCTCTGACGATTGCTTCA+AGG | - | chr7_2:9899382-9899401 | None:intergenic | 50.0% | |
| ATCGTCAGAGGTCATCGTTC+CGG | + | chr7_2:9899389-9899408 | Msa1048280:CDS | 50.0% | |
| ! | AGAGCACTCACAGTGACATG+TGG | + | chr7_2:9899833-9899852 | Msa1048280:intron | 50.0% |
| TCAGTGTTGTGTCAGGATCG+TGG | + | chr7_2:9899913-9899932 | Msa1048280:intron | 50.0% | |
| TGTCCGACACTGACATGTGT+CGG | + | chr7_2:9900963-9900982 | Msa1048280:intron | 50.0% | |
| !!! | TAGTGCAGCCAGCCACTTTT+TGG | + | chr7_2:9901498-9901517 | Msa1048280:intron | 50.0% |
| TGTCAAACATGCCGAGTGGA+TGG | - | chr7_2:9902528-9902547 | None:intergenic | 50.0% | |
| ATCCACTCGGCATGTTTGAC+AGG | + | chr7_2:9902527-9902546 | Msa1048280:CDS | 50.0% | |
| TACCTGTCAAACATGCCGAG+TGG | - | chr7_2:9902532-9902551 | None:intergenic | 50.0% | |
| TCTCCTCAGTATTGCCACTC+TGG | + | chr7_2:9902633-9902652 | Msa1048280:intron | 50.0% | |
| ATTCTGAGCAACTGCCAGAG+TGG | - | chr7_2:9902650-9902669 | None:intergenic | 50.0% | |
| GGCAGTTGCTCAGAATATGC+GGG | + | chr7_2:9902654-9902673 | Msa1048280:CDS | 50.0% | |
| GGTTCTTGTTGACACTCCTC+TGG | + | chr7_2:9902690-9902709 | Msa1048280:CDS | 50.0% | |
| !!! | GTCCGACCTTCTAGCTTTTG+AGG | + | chr7_2:9903152-9903171 | Msa1048280:CDS | 50.0% |
| ATCCGCATAACTGGCATCCA+TGG | + | chr7_2:9903255-9903274 | Msa1048280:intron | 50.0% | |
| GCTGCACAACATGGAAACCA+TGG | - | chr7_2:9903275-9903294 | None:intergenic | 50.0% | |
| AGCTTACCAGAGATGACCGT+AGG | + | chr7_2:9903305-9903324 | Msa1048280:CDS | 50.0% | |
| CAACTTCCTACGGTCATCTC+TGG | - | chr7_2:9903314-9903333 | None:intergenic | 50.0% | |
| CAGCTACCCATATGGTCATG+AGG | + | chr7_2:9903456-9903475 | Msa1048280:intron | 50.0% | |
| GCAAGCTCCTCATGACCATA+TGG | - | chr7_2:9903466-9903485 | None:intergenic | 50.0% | |
| CATGCAACGGCAGTTAAACC+AGG | - | chr7_2:9903703-9903722 | None:intergenic | 50.0% | |
| CATGCAACGGCAGTTAAACC+AGG | - | chr7_2:9903703-9903722 | None:intergenic | 50.0% | |
| GACCTTAAACCTGTACCTCC+AGG | + | chr7_2:9903970-9903989 | Msa1048280:intron | 50.0% | |
| ! | CTCCTGGAGGTACAGGTTTA+AGG | - | chr7_2:9903975-9903994 | None:intergenic | 50.0% |
| AGAGAGCCAGATGCTTGACA+AGG | + | chr7_2:9904302-9904321 | Msa1048280:CDS | 50.0% | |
| ! | CAAGGCATTCTATGAGGAGG+AGG | + | chr7_2:9904320-9904339 | Msa1048280:CDS | 50.0% |
| TCTATGAGGAGGAGGTCAAG+AGG | + | chr7_2:9904328-9904347 | Msa1048280:CDS | 50.0% | |
| CTGCCAGAGTGGCAATACTG+AGG | - | chr7_2:9902639-9902658 | None:intergenic | 55.0% | |
| TATGCGGGAGCTTTACAGGC+TGG | + | chr7_2:9902669-9902688 | Msa1048280:CDS | 55.0% | |
| ! | TCAGAGAAGTATGGCGCCAG+AGG | - | chr7_2:9902709-9902728 | None:intergenic | 55.0% |
| !! | TGAGGAGCTTGCTGTCTGTG+AGG | + | chr7_2:9903474-9903493 | Msa1048280:CDS | 55.0% |
| GACCTTAAACCTGTACCGCC+AGG | + | chr7_2:9903722-9903741 | Msa1048280:intron | 55.0% | |
| CTCCTGGCGGTACAGGTTTA+AGG | - | chr7_2:9903727-9903746 | None:intergenic | 55.0% | |
| TCTACAAGTAGGGCAGCTCC+TGG | - | chr7_2:9903743-9903762 | None:intergenic | 55.0% | |
| TCTACAAGTAGGGCAGCTCC+TGG | - | chr7_2:9903743-9903762 | None:intergenic | 55.0% | |
| ! | CGCGTAGGTTCGTGCTGTTA+TGG | + | chr7_2:9904233-9904252 | Msa1048280:intron | 55.0% |
| ACAAGTAGGGCAGCTCCTGG+CGG | - | chr7_2:9903740-9903759 | None:intergenic | 60.0% | |
| ACAAGTAGGGCAGCTCCTGG+AGG | - | chr7_2:9903740-9903759 | None:intergenic | 60.0% | |
| ! | AGGGCAGCTCCTGGAGGTAC+AGG | - | chr7_2:9903982-9904001 | None:intergenic | 65.0% |
| AGGGCAGCTCCTGGCGGTAC+AGG | - | chr7_2:9903734-9903753 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 9899199 | 9904909 | 9899199 | ID=Msa1048280;Name=Msa1048280 |
| chr7_2 | mRNA | 9899199 | 9904909 | 9899199 | ID=Msa1048280-mRNA-1;Parent=Msa1048280;Name=Msa1048280-mRNA-1;_AED=0.41;_eAED=0.41;_QI=136|1|1|1|1|1|10|268|351 |
| chr7_2 | exon | 9899199 | 9899515 | 9899199 | ID=Msa1048280-mRNA-1:exon:2605;Parent=Msa1048280-mRNA-1 |
| chr7_2 | exon | 9902117 | 9902237 | 9902117 | ID=Msa1048280-mRNA-1:exon:2606;Parent=Msa1048280-mRNA-1 |
| chr7_2 | exon | 9902441 | 9902548 | 9902441 | ID=Msa1048280-mRNA-1:exon:2607;Parent=Msa1048280-mRNA-1 |
| chr7_2 | exon | 9902642 | 9902744 | 9902642 | ID=Msa1048280-mRNA-1:exon:2608;Parent=Msa1048280-mRNA-1 |
| chr7_2 | exon | 9902935 | 9903015 | 9902935 | ID=Msa1048280-mRNA-1:exon:2609;Parent=Msa1048280-mRNA-1 |
| chr7_2 | exon | 9903123 | 9903208 | 9903123 | ID=Msa1048280-mRNA-1:exon:2610;Parent=Msa1048280-mRNA-1 |
| chr7_2 | exon | 9903294 | 9903353 | 9903294 | ID=Msa1048280-mRNA-1:exon:2611;Parent=Msa1048280-mRNA-1 |
| chr7_2 | exon | 9903459 | 9903507 | 9903459 | ID=Msa1048280-mRNA-1:exon:2612;Parent=Msa1048280-mRNA-1 |
| chr7_2 | exon | 9904240 | 9904374 | 9904240 | ID=Msa1048280-mRNA-1:exon:2613;Parent=Msa1048280-mRNA-1 |
| chr7_2 | exon | 9904510 | 9904909 | 9904510 | ID=Msa1048280-mRNA-1:exon:2614;Parent=Msa1048280-mRNA-1 |
| chr7_2 | five_prime_UTR | 9899199 | 9899334 | 9899199 | ID=Msa1048280-mRNA-1:five_prime_utr;Parent=Msa1048280-mRNA-1 |
| chr7_2 | CDS | 9899335 | 9899515 | 9899335 | ID=Msa1048280-mRNA-1:cds;Parent=Msa1048280-mRNA-1 |
| chr7_2 | CDS | 9902117 | 9902237 | 9902117 | ID=Msa1048280-mRNA-1:cds;Parent=Msa1048280-mRNA-1 |
| chr7_2 | CDS | 9902441 | 9902548 | 9902441 | ID=Msa1048280-mRNA-1:cds;Parent=Msa1048280-mRNA-1 |
| chr7_2 | CDS | 9902642 | 9902744 | 9902642 | ID=Msa1048280-mRNA-1:cds;Parent=Msa1048280-mRNA-1 |
| chr7_2 | CDS | 9902935 | 9903015 | 9902935 | ID=Msa1048280-mRNA-1:cds;Parent=Msa1048280-mRNA-1 |
| chr7_2 | CDS | 9903123 | 9903208 | 9903123 | ID=Msa1048280-mRNA-1:cds;Parent=Msa1048280-mRNA-1 |
| chr7_2 | CDS | 9903294 | 9903353 | 9903294 | ID=Msa1048280-mRNA-1:cds;Parent=Msa1048280-mRNA-1 |
| chr7_2 | CDS | 9903459 | 9903507 | 9903459 | ID=Msa1048280-mRNA-1:cds;Parent=Msa1048280-mRNA-1 |
| chr7_2 | CDS | 9904240 | 9904374 | 9904240 | ID=Msa1048280-mRNA-1:cds;Parent=Msa1048280-mRNA-1 |
| chr7_2 | CDS | 9904510 | 9904641 | 9904510 | ID=Msa1048280-mRNA-1:cds;Parent=Msa1048280-mRNA-1 |
| chr7_2 | three_prime_UTR | 9904642 | 9904909 | 9904642 | ID=Msa1048280-mRNA-1:three_prime_utr;Parent=Msa1048280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
