AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0341050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341050 MtrunA17_Chr2g0332921 100.000 180 0 0 1 180 1 180 4.04e-130 362
Msa0341050 MtrunA17_Chr2g0307071 77.778 180 40 0 1 180 1 180 7.63e-94 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341050 AT1G52600.1 91.667 180 15 0 1 180 1 180 4.70e-121 339
Msa0341050 AT3G15710.1 85.556 180 26 0 1 180 1 180 2.16e-110 312

Find 57 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGTTGTCGTTGTTCTTTC+TGG -0.006320 2_4:-62474528 Msa0341050:CDS
AATTAATATTATGCTGTTAA+TGG 0.174068 2_4:+62472378 None:intergenic
TATATTCTCATCGGTGCTTT+GGG 0.249893 2_4:-62472520 Msa0341050:CDS
GCTGCAAAGGCACCACATTA+TGG 0.262708 2_4:-62473165 Msa0341050:CDS
CGTTGTTCTTTCTGGAAGTA+TGG 0.268459 2_4:-62474520 Msa0341050:CDS
GGTTCTTACCTTATGTTGGC+TGG 0.291373 2_4:-62472830 Msa0341050:CDS
TTACGTCTGCACTGATAATA+TGG 0.295460 2_4:-62474584 Msa0341050:CDS
CACTCACTCACTCAAGAAAT+TGG 0.305413 2_4:-62475495 Msa0341050:five_prime_UTR
GATCGTGCATCGTGTAATTA+AGG 0.306443 2_4:-62474084 Msa0341050:intron
ATTAATTAATACAAAGTAGT+TGG 0.319152 2_4:-62472362 Msa0341050:three_prime_UTR
GTATATTCTCATCGGTGCTT+TGG 0.339154 2_4:-62472521 Msa0341050:CDS
GTTTCTCTATTTGTATTTGT+TGG 0.349188 2_4:-62475539 Msa0341050:five_prime_UTR
GTACATGAAAGAGGAGATAC+TGG 0.367204 2_4:-62473437 Msa0341050:CDS
ACAATCTCTCCTGCGCGAAT+TGG 0.370765 2_4:+62474284 None:intergenic
CTGCAAAGGCACCACATTAT+GGG 0.401647 2_4:-62473164 Msa0341050:CDS
ACGGATCTGAAGAGATTTGA+TGG 0.414274 2_4:+62475399 None:intergenic
ATGGCCAGCTTTGGCTGCAA+AGG 0.415700 2_4:-62473178 Msa0341050:CDS
TTGGTAGGAGATAACAACTA+TGG 0.420648 2_4:-62473224 Msa0341050:intron
TGTATGCTCATGGCCAGCTT+TGG 0.429153 2_4:-62473187 Msa0341050:CDS
GGCAGGTTCTTACCTTATGT+TGG 0.435021 2_4:-62472834 Msa0341050:intron
GAAGAATCTCAATCAAATTA+CGG 0.442574 2_4:-62472467 Msa0341050:three_prime_UTR
CCAGAAAGAACAACGACAAC+AGG 0.443989 2_4:+62474528 None:intergenic
TCTTTCTGGAAGTATGGAAC+CGG 0.447654 2_4:-62474514 Msa0341050:CDS
CTTGTTCTTACACATGAGTA+AGG 0.448520 2_4:-62474309 Msa0341050:CDS
CTCACTCAGGCTGTTAGCCT+TGG 0.449557 2_4:-62475370 Msa0341050:intron
AGCAAACAAACCTTGATGAT+AGG 0.465854 2_4:+62472783 None:intergenic
GGTGCCTTTGCAGCCAAAGC+TGG 0.467005 2_4:+62473174 None:intergenic
CACATTATGGGTAGAGCTGT+TGG 0.467483 2_4:-62473152 Msa0341050:CDS
GTTCTTACCTTATGTTGGCT+GGG 0.476337 2_4:-62472829 Msa0341050:CDS
ATTGTCACCCAGCCAACATA+AGG 0.486894 2_4:+62472822 None:intergenic
TTGCTTACACGTTTGAATCC+CGG 0.492003 2_4:+62474495 None:intergenic
TGGTAGGAGATAACAACTAT+GGG 0.500018 2_4:-62473223 Msa0341050:intron
AGAAACGCAATGGGTTTCGT+TGG 0.517115 2_4:-62475436 Msa0341050:exon
TTTGCTCATAGTACTATTCG+AGG 0.518018 2_4:+62472439 None:intergenic
ATTCAAGAAAGAAACGCAAT+GGG 0.520667 2_4:-62475445 Msa0341050:exon
ACATTATGGGTAGAGCTGTT+GGG 0.526062 2_4:-62473151 Msa0341050:intron
CTTTCTGGAAGTATGGAACC+GGG 0.531861 2_4:-62474513 Msa0341050:CDS
TTAATTACACGATGCACGAT+CGG 0.532530 2_4:+62474086 None:intergenic
AAGGCATTGATGTGCATCAC+TGG 0.537420 2_4:-62474561 Msa0341050:CDS
GAGGTTGATGTTCTCACAAA+AGG 0.541893 2_4:-62473413 Msa0341050:intron
CATTCAAGAAAGAAACGCAA+TGG 0.543308 2_4:-62475446 Msa0341050:exon
TGATAACTTCAAAAGAGTAA+AGG 0.546067 2_4:-62472489 Msa0341050:exon
CAAATCTCTTCAGATCCGTC+AGG 0.547809 2_4:-62475395 Msa0341050:CDS
ATAACAACTATGGGGATGAC+AGG 0.548283 2_4:-62473214 Msa0341050:CDS
GATCCGTCAGGTCCTCACTC+AGG 0.557343 2_4:-62475383 Msa0341050:CDS
ATATTCTCATCGGTGCTTTG+GGG 0.574182 2_4:-62472519 Msa0341050:CDS
TACATGAAAGAGGAGATACT+GGG 0.588815 2_4:-62473436 Msa0341050:CDS
GACAGGCTACTGTATGCTCA+TGG 0.602506 2_4:-62473197 Msa0341050:CDS
GTCTGCACTGATAATATGGA+AGG 0.605731 2_4:-62474580 Msa0341050:CDS
CAGCCTGAGTGAGGACCTGA+CGG 0.616226 2_4:+62475380 None:intergenic
AGTAAGGATCCAATTCGCGC+AGG 0.635833 2_4:-62474293 Msa0341050:CDS
CAACAGCTCTACCCATAATG+TGG 0.657840 2_4:+62473153 None:intergenic
CAAGGCTAACAGCCTGAGTG+AGG 0.659133 2_4:+62475371 None:intergenic
AATACAAATAGAGAAACCCA+AGG 0.681579 2_4:+62475545 None:intergenic
GGTAGGAGATAACAACTATG+GGG 0.698337 2_4:-62473222 Msa0341050:intron
TGAAAGAGGAGATACTGGGG+AGG 0.732394 2_4:-62473432 Msa0341050:CDS
ACATGAAAGAGGAGATACTG+GGG 0.746258 2_4:-62473435 Msa0341050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAAAAAATATATA+AGG - chr2_4:62474207-62474226 Msa0341050:intron 0.0%
!!! TTTTAATCAATTATTATATG+GGG - chr2_4:62472764-62472783 Msa0341050:intron 10.0%
!!! TTAACTTTATTTTATCTTTT+TGG - chr2_4:62473128-62473147 Msa0341050:intron 10.0%
!!! TTGGATTTTATAATTTATTT+TGG - chr2_4:62475571-62475590 Msa0341050:five_prime_UTR 10.0%
!! TACGTTATACAATTTATATT+TGG - chr2_4:62472631-62472650 Msa0341050:intron 15.0%
!!! TCAATTTAGTTTATAATTCA+AGG - chr2_4:62472829-62472848 Msa0341050:CDS 15.0%
!! TTTACATTTATGTATGTTTA+TGG - chr2_4:62475195-62475214 Msa0341050:intron 15.0%
!! AATTAATATTATGCTGTTAA+TGG + chr2_4:62475539-62475558 None:intergenic 15.0%
!! ATTAATTAATACAAAGTAGT+TGG - chr2_4:62475552-62475571 Msa0341050:five_prime_UTR 15.0%
!! TTTATGGGTTTATTGATAAA+TGG - chr2_4:62472867-62472886 Msa0341050:intron 20.0%
!! TAAATGGTTGTTTATCTTTA+AGG - chr2_4:62472883-62472902 Msa0341050:intron 20.0%
!! TATTAGATACAGAATTACTA+AGG + chr2_4:62473461-62473480 None:intergenic 20.0%
!! TTAGTTGTCAATTTATATAG+TGG - chr2_4:62474625-62474644 Msa0341050:intron 20.0%
!!! ATTGGTTTAAAAATCATGAT+AGG + chr2_4:62475255-62475274 None:intergenic 20.0%
!!! TATCATGATTTTTAAACCAA+TGG - chr2_4:62475254-62475273 Msa0341050:intron 20.0%
!!! ATCATGATTTTTAAACCAAT+GGG - chr2_4:62475255-62475274 Msa0341050:intron 20.0%
!!! AATTTATTTTGGTTGTTTGT+TGG - chr2_4:62475582-62475601 Msa0341050:five_prime_UTR 20.0%
! GTTTCTCTATTTGTATTTGT+TGG - chr2_4:62472375-62472394 Msa0341050:three_prime_UTR 25.0%
!!! TGATTGAGTTGAATTGAATT+GGG + chr2_4:62472586-62472605 None:intergenic 25.0%
!!! TTGATTGAGTTGAATTGAAT+TGG + chr2_4:62472587-62472606 None:intergenic 25.0%
! TCAAAAACATCAAAATTCGA+CGG + chr2_4:62472687-62472706 None:intergenic 25.0%
!! TTTCCTTTCAATTTTAGATG+TGG - chr2_4:62472798-62472817 Msa0341050:CDS 25.0%
!! TTCCTTTCAATTTTAGATGT+GGG - chr2_4:62472799-62472818 Msa0341050:CDS 25.0%
!!! TATCTTTAAGGATTTTGATG+AGG - chr2_4:62472895-62472914 Msa0341050:intron 25.0%
!!! ATCTTTAAGGATTTTGATGA+GGG - chr2_4:62472896-62472915 Msa0341050:intron 25.0%
! AATAAACTGTTAATCCAAAC+AGG - chr2_4:62473211-62473230 Msa0341050:CDS 25.0%
! ATAAACTGTTAATCCAAACA+GGG - chr2_4:62473212-62473231 Msa0341050:CDS 25.0%
! CTATGAATAAAACAATGATC+TGG + chr2_4:62473273-62473292 None:intergenic 25.0%
! TTTCTGATGCTAATGAATAT+TGG - chr2_4:62473565-62473584 Msa0341050:intron 25.0%
!!! TAATGAATATTGGTTTTTGC+AGG - chr2_4:62473575-62473594 Msa0341050:intron 25.0%
!!! AATGAATATTGGTTTTTGCA+GGG - chr2_4:62473576-62473595 Msa0341050:intron 25.0%
! TTGAAGTAAGTAAAACATAC+AGG + chr2_4:62473697-62473716 None:intergenic 25.0%
! ATTTCATTTCTTGAATGTGT+AGG - chr2_4:62474044-62474063 Msa0341050:intron 25.0%
! TTTCATTTCTTGAATGTGTA+GGG - chr2_4:62474045-62474064 Msa0341050:intron 25.0%
! TATGTAGTTACAGTTTGAAT+AGG + chr2_4:62474074-62474093 None:intergenic 25.0%
! GATAAATAAGAACTAAAAGC+AGG + chr2_4:62474180-62474199 None:intergenic 25.0%
! ATCACTAATCTGAGAAATAA+TGG - chr2_4:62474362-62474381 Msa0341050:intron 25.0%
!! TAAATGCTTGATCATTTTGT+AGG - chr2_4:62474455-62474474 Msa0341050:intron 25.0%
! TCAAATTCACTATTGAGATT+GGG + chr2_4:62474580-62474599 None:intergenic 25.0%
! ATCAAATTCACTATTGAGAT+TGG + chr2_4:62474581-62474600 None:intergenic 25.0%
! CGAGAAAAAGGAAATATAAT+TGG + chr2_4:62474604-62474623 None:intergenic 25.0%
! GACTTGTAACATAAAGATTA+AGG - chr2_4:62474806-62474825 Msa0341050:intron 25.0%
!! TGATATTAAGGTATTATGCA+TGG - chr2_4:62474879-62474898 Msa0341050:intron 25.0%
! TAAATGATAACACAATAGGT+TGG + chr2_4:62475160-62475179 None:intergenic 25.0%
! CTTGTTGCAATTCAAATTAT+AGG + chr2_4:62475337-62475356 None:intergenic 25.0%
! TGATAACTTCAAAAGAGTAA+AGG - chr2_4:62475425-62475444 Msa0341050:CDS 25.0%
! GAAGAATCTCAATCAAATTA+CGG - chr2_4:62475447-62475466 Msa0341050:exon 25.0%
AATACAAATAGAGAAACCCA+AGG + chr2_4:62472372-62472391 None:intergenic 30.0%
ATTCAAGAAAGAAACGCAAT+GGG - chr2_4:62472469-62472488 Msa0341050:three_prime_UTR 30.0%
!! ATTGAGTTGAATTGAATTGG+GGG + chr2_4:62472584-62472603 None:intergenic 30.0%
!! GATTGAGTTGAATTGAATTG+GGG + chr2_4:62472585-62472604 None:intergenic 30.0%
! AACCCACATCTAAAATTGAA+AGG + chr2_4:62472804-62472823 None:intergenic 30.0%
! TTTTTCGTGTTGTGGTTTAT+GGG - chr2_4:62472852-62472871 Msa0341050:intron 30.0%
!! TCTTTAAGGATTTTGATGAG+GGG - chr2_4:62472897-62472916 Msa0341050:intron 30.0%
TGTGAGGAATTCTAATGTTA+AGG - chr2_4:62472924-62472943 Msa0341050:intron 30.0%
GTGAGGAATTCTAATGTTAA+GGG - chr2_4:62472925-62472944 Msa0341050:intron 30.0%
GCCTATGTAGATTATATGAA+CGG - chr2_4:62473234-62473253 Msa0341050:intron 30.0%
!!! ATGAATATTGGTTTTTGCAG+GGG - chr2_4:62473577-62473596 Msa0341050:intron 30.0%
!!! TGTACCCTTTTTTTTCCTTT+AGG - chr2_4:62473794-62473813 Msa0341050:intron 30.0%
!!! GTACCCTTTTTTTTCCTTTA+GGG - chr2_4:62473795-62473814 Msa0341050:intron 30.0%
!!! TACCCTTTTTTTTCCTTTAG+GGG - chr2_4:62473796-62473815 Msa0341050:intron 30.0%
! TTAAGGTAAGCTCAGTATTT+TGG - chr2_4:62473847-62473866 Msa0341050:intron 30.0%
! AATATCTTGTCATTTGCAAG+TGG - chr2_4:62474310-62474329 Msa0341050:CDS 30.0%
TGGATAAGATTGATATTACC+TGG - chr2_4:62474382-62474401 Msa0341050:intron 30.0%
! ATTTTGTAGGTACATGAAAG+AGG - chr2_4:62474468-62474487 Msa0341050:intron 30.0%
TTGACAACTAAACGAGAAAA+AGG + chr2_4:62474616-62474635 None:intergenic 30.0%
AAACAGCAAAATACAAGAGA+CGG + chr2_4:62474670-62474689 None:intergenic 30.0%
!!! CTCTTGTATTTTGCTGTTTT+TGG - chr2_4:62474671-62474690 Msa0341050:intron 30.0%
!!! TGTATTTTGCTGTTTTTGGT+AGG - chr2_4:62474675-62474694 Msa0341050:intron 30.0%
GAATGAGATCTGTGATATTA+AGG - chr2_4:62474867-62474886 Msa0341050:intron 30.0%
GATAAATTAGGATAAACCCT+TGG + chr2_4:62474964-62474983 None:intergenic 30.0%
GAATTAGCGTAGGATAAATT+AGG + chr2_4:62474976-62474995 None:intergenic 30.0%
ACATTGCTTGTATTTGTCAA+TGG - chr2_4:62475059-62475078 Msa0341050:intron 30.0%
CAGCTAAATGATAACACAAT+AGG + chr2_4:62475164-62475183 None:intergenic 30.0%
TGTTATCATTTAGCTGAAGT+TGG - chr2_4:62475168-62475187 Msa0341050:intron 30.0%
! GTTTTGCAGTATATTCTCAT+CGG - chr2_4:62475385-62475404 Msa0341050:CDS 30.0%
!!! CATGCTTTTTTTTAACTCGA+AGG - chr2_4:62475501-62475520 Msa0341050:five_prime_UTR 30.0%
!!! TCTTGTTTTGTTTGGTCCTT+GGG - chr2_4:62472353-62472372 Msa0341050:three_prime_UTR 35.0%
CATTCAAGAAAGAAACGCAA+TGG - chr2_4:62472468-62472487 Msa0341050:three_prime_UTR 35.0%
! ATTTGGTAGCTACATTGATC+TGG - chr2_4:62472648-62472667 Msa0341050:intron 35.0%
! TTTGGTAGCTACATTGATCT+GGG - chr2_4:62472649-62472668 Msa0341050:intron 35.0%
AAAATTCGACGGTTTCAAAG+TGG + chr2_4:62472676-62472695 None:intergenic 35.0%
! ATTCAAGGTTTTTCGTGTTG+TGG - chr2_4:62472844-62472863 Msa0341050:intron 35.0%
! GTTTTTCGTGTTGTGGTTTA+TGG - chr2_4:62472851-62472870 Msa0341050:intron 35.0%
! TCTAATGTTAAGGGCATGTT+TGG - chr2_4:62472934-62472953 Msa0341050:intron 35.0%
GTCTCACAGACTTATATGAT+TGG + chr2_4:62472980-62472999 None:intergenic 35.0%
TATAAGTCTGTGAGACTGTT+TGG - chr2_4:62472984-62473003 Msa0341050:intron 35.0%
GCCGTTCATATAATCTACAT+AGG + chr2_4:62473238-62473257 None:intergenic 35.0%
! TTACGTCTGCACTGATAATA+TGG - chr2_4:62473330-62473349 Msa0341050:intron 35.0%
TGACACTGTACTGTTATTGT+AGG + chr2_4:62473488-62473507 None:intergenic 35.0%
!!! TGAATATTGGTTTTTGCAGG+GGG - chr2_4:62473578-62473597 Msa0341050:intron 35.0%
CTTGTTCTTACACATGAGTA+AGG - chr2_4:62473605-62473624 Msa0341050:intron 35.0%
ATACAGGATATACAACAGAG+AGG + chr2_4:62473681-62473700 None:intergenic 35.0%
TCCTTACTGACAAAATCTGT+TGG - chr2_4:62473769-62473788 Msa0341050:intron 35.0%
TTAATTACACGATGCACGAT+CGG + chr2_4:62473831-62473850 None:intergenic 35.0%
ATCCACACATAATTGTCTTC+TGG - chr2_4:62473974-62473993 Msa0341050:intron 35.0%
ATAGGACCCAGATACAAAAA+TGG + chr2_4:62474143-62474162 None:intergenic 35.0%
! AAGCATTTAGAGTCTCAAAC+AGG + chr2_4:62474444-62474463 None:intergenic 35.0%
TACATGAAAGAGGAGATACT+GGG - chr2_4:62474478-62474497 Msa0341050:intron 35.0%
AACAGCAAAATACAAGAGAC+GGG + chr2_4:62474669-62474688 None:intergenic 35.0%
TTGGTAGGAGATAACAACTA+TGG - chr2_4:62474690-62474709 Msa0341050:intron 35.0%
TGGTAGGAGATAACAACTAT+GGG - chr2_4:62474691-62474710 Msa0341050:intron 35.0%
GTGATAGATATTCCACAAGT+AGG + chr2_4:62474921-62474940 None:intergenic 35.0%
TTGAACCTTTGAACATACCA+AGG - chr2_4:62474944-62474963 Msa0341050:intron 35.0%
TGAACCTTTGAACATACCAA+GGG - chr2_4:62474945-62474964 Msa0341050:intron 35.0%
TAAACCCTTGGTATGTTCAA+AGG + chr2_4:62474952-62474971 None:intergenic 35.0%
TTATCCTACGCTAATTCCTA+CGG - chr2_4:62474979-62474998 Msa0341050:intron 35.0%
! CGAAACATGCTTTGTTCTAT+AGG + chr2_4:62475013-62475032 None:intergenic 35.0%
GACTGAAAAACCTATCATCA+AGG - chr2_4:62475121-62475140 Msa0341050:intron 35.0%
! AGCAAACAAACCTTGATGAT+AGG + chr2_4:62475134-62475153 None:intergenic 35.0%
! ATGATAACACAATAGGTTGG+CGG + chr2_4:62475157-62475176 None:intergenic 35.0%
TATGGTGAAACCTATCATCA+AGG - chr2_4:62475213-62475232 Msa0341050:intron 35.0%
! CATAAGCAAACCTTGATGAT+AGG + chr2_4:62475226-62475245 None:intergenic 35.0%
! CTATCATCAAGGTTTGCTTA+TGG - chr2_4:62475224-62475243 Msa0341050:intron 35.0%
GATCTACTTGCTCTAATGTA+AGG + chr2_4:62475315-62475334 None:intergenic 35.0%
! TATATTCTCATCGGTGCTTT+GGG - chr2_4:62475394-62475413 Msa0341050:CDS 35.0%
TTTGCTCATAGTACTATTCG+AGG + chr2_4:62475478-62475497 None:intergenic 35.0%
!!! GCGCTTTCTCTTGTTTTGTT+TGG - chr2_4:62472345-62472364 Msa0341050:three_prime_UTR 40.0%
!!! CTCTTGTTTTGTTTGGTCCT+TGG - chr2_4:62472352-62472371 Msa0341050:three_prime_UTR 40.0%
CACTCACTCACTCAAGAAAT+TGG - chr2_4:62472419-62472438 Msa0341050:three_prime_UTR 40.0%
ACGGATCTGAAGAGATTTGA+TGG + chr2_4:62472518-62472537 None:intergenic 40.0%
! TGTTAAGGGCATGTTTGGAT+TGG - chr2_4:62472939-62472958 Msa0341050:intron 40.0%
TAATCTACATAGGCCCTGTT+TGG + chr2_4:62473228-62473247 None:intergenic 40.0%
! TTTTCCTTGTGTTCTGCTTC+AGG - chr2_4:62473299-62473318 Msa0341050:intron 40.0%
! GTCTGCACTGATAATATGGA+AGG - chr2_4:62473334-62473353 Msa0341050:intron 40.0%
! CGTTGTTCTTTCTGGAAGTA+TGG - chr2_4:62473394-62473413 Msa0341050:intron 40.0%
! TCTTTCTGGAAGTATGGAAC+CGG - chr2_4:62473400-62473419 Msa0341050:intron 40.0%
TTGCTTACACGTTTGAATCC+CGG + chr2_4:62473422-62473441 None:intergenic 40.0%
! GCCAACAGATTTTGTCAGTA+AGG + chr2_4:62473773-62473792 None:intergenic 40.0%
CGCCCCTAAAGGAAAAAAAA+GGG + chr2_4:62473801-62473820 None:intergenic 40.0%
TCGCCCCTAAAGGAAAAAAA+AGG + chr2_4:62473802-62473821 None:intergenic 40.0%
GATCGTGCATCGTGTAATTA+AGG - chr2_4:62473830-62473849 Msa0341050:intron 40.0%
! TGCTGAATGTGACTTTGAGA+CGG - chr2_4:62473905-62473924 Msa0341050:intron 40.0%
AGCCAGAAGACAATTATGTG+TGG + chr2_4:62473979-62473998 None:intergenic 40.0%
ACACATAATTGTCTTCTGGC+TGG - chr2_4:62473978-62473997 Msa0341050:intron 40.0%
! TGTCTTCTGGCTGGAATATT+AGG - chr2_4:62473987-62474006 Msa0341050:intron 40.0%
GAAAAAGTTGTTCACAGTGC+TGG - chr2_4:62474009-62474028 Msa0341050:intron 40.0%
TGAGCTTACCAAGCTTGATT+TGG - chr2_4:62474109-62474128 Msa0341050:intron 40.0%
GAGCTTACCAAGCTTGATTT+GGG - chr2_4:62474110-62474129 Msa0341050:intron 40.0%
!! TGTGGGTCCATTTTTGTATC+TGG - chr2_4:62474133-62474152 Msa0341050:intron 40.0%
!! GTGGGTCCATTTTTGTATCT+GGG - chr2_4:62474134-62474153 Msa0341050:intron 40.0%
CAGGTAGTGACTATGTTGAT+AGG + chr2_4:62474161-62474180 None:intergenic 40.0%
ACATTGTGAACTGATGCCAT+TGG - chr2_4:62474236-62474255 Msa0341050:intron 40.0%
AGAGGTTCAAAAAGTGAAGG+AGG + chr2_4:62474267-62474286 None:intergenic 40.0%
CACAGAGGTTCAAAAAGTGA+AGG + chr2_4:62474270-62474289 None:intergenic 40.0%
AAGTAGTTCAAACAGCACAG+AGG + chr2_4:62474285-62474304 None:intergenic 40.0%
AACTTGTGGAAACTGGAGAT+TGG - chr2_4:62474334-62474353 Msa0341050:intron 40.0%
GTACATGAAAGAGGAGATAC+TGG - chr2_4:62474477-62474496 Msa0341050:intron 40.0%
ACATGAAAGAGGAGATACTG+GGG - chr2_4:62474479-62474498 Msa0341050:intron 40.0%
!! GAGGTTGATGTTCTCACAAA+AGG - chr2_4:62474501-62474520 Msa0341050:intron 40.0%
GGTAGGAGATAACAACTATG+GGG - chr2_4:62474692-62474711 Msa0341050:intron 40.0%
ATAACAACTATGGGGATGAC+AGG - chr2_4:62474700-62474719 Msa0341050:intron 40.0%
ACATTATGGGTAGAGCTGTT+GGG - chr2_4:62474763-62474782 Msa0341050:intron 40.0%
TGCTTGAAGATACCTACTTG+TGG - chr2_4:62474906-62474925 Msa0341050:intron 40.0%
TCTATAGGAATGCAAACCGT+AGG + chr2_4:62474998-62475017 None:intergenic 40.0%
TGCTTGTATTTGTCAATGGC+AGG - chr2_4:62475063-62475082 Msa0341050:intron 40.0%
! GTTCTTACCTTATGTTGGCT+GGG - chr2_4:62475085-62475104 Msa0341050:intron 40.0%
AGTGGAAAATCATAGCCCAT+TGG + chr2_4:62475273-62475292 None:intergenic 40.0%
!! GTTGACTTGAGAGAGAAAAG+TGG + chr2_4:62475291-62475310 None:intergenic 40.0%
! GTATATTCTCATCGGTGCTT+TGG - chr2_4:62475393-62475412 Msa0341050:CDS 40.0%
! ATATTCTCATCGGTGCTTTG+GGG - chr2_4:62475395-62475414 Msa0341050:CDS 40.0%
! AGAAACGCAATGGGTTTCGT+TGG - chr2_4:62472478-62472497 Msa0341050:exon 45.0%
CAAATCTCTTCAGATCCGTC+AGG - chr2_4:62472519-62472538 Msa0341050:CDS 45.0%
TTTGATGAGGGGAGATTGTG+AGG - chr2_4:62472908-62472927 Msa0341050:intron 45.0%
!! AAGGCATTGATGTGCATCAC+TGG - chr2_4:62473353-62473372 Msa0341050:intron 45.0%
CCAGAAAGAACAACGACAAC+AGG + chr2_4:62473389-62473408 None:intergenic 45.0%
CCTGTTGTCGTTGTTCTTTC+TGG - chr2_4:62473386-62473405 Msa0341050:intron 45.0%
! CTTTCTGGAAGTATGGAACC+GGG - chr2_4:62473401-62473420 Msa0341050:intron 45.0%
ACCTTCTCATGTTAGAGCCT+TGG - chr2_4:62473940-62473959 Msa0341050:intron 45.0%
! TCCAAGGCTCTAACATGAGA+AGG + chr2_4:62473944-62473963 None:intergenic 45.0%
GTGGATCATCTCATGATCCA+AGG + chr2_4:62473960-62473979 None:intergenic 45.0%
! AAGTTGTTCACAGTGCTGGA+TGG - chr2_4:62474013-62474032 Msa0341050:intron 45.0%
!! TACCAAGCTTGATTTGGGTG+TGG - chr2_4:62474115-62474134 Msa0341050:intron 45.0%
!! ACCAAGCTTGATTTGGGTGT+GGG - chr2_4:62474116-62474135 Msa0341050:intron 45.0%
AGTGAAGGAGGAACTTCCAA+TGG + chr2_4:62474255-62474274 None:intergenic 45.0%
CATTTGCAAGTGGCAACTTG+TGG - chr2_4:62474320-62474339 Msa0341050:CDS 45.0%
AAGTGGCAACTTGTGGAAAC+TGG - chr2_4:62474327-62474346 Msa0341050:intron 45.0%
CAACGCATGAAGATCAATCC+AGG + chr2_4:62474403-62474422 None:intergenic 45.0%
!! CTGCAAAGGCACCACATTAT+GGG - chr2_4:62474750-62474769 Msa0341050:intron 45.0%
CAACAGCTCTACCCATAATG+TGG + chr2_4:62474764-62474783 None:intergenic 45.0%
CACATTATGGGTAGAGCTGT+TGG - chr2_4:62474762-62474781 Msa0341050:intron 45.0%
CAAACCGTAGGAATTAGCGT+AGG + chr2_4:62474986-62475005 None:intergenic 45.0%
GGCAGGTTCTTACCTTATGT+TGG - chr2_4:62475080-62475099 Msa0341050:intron 45.0%
GGTTCTTACCTTATGTTGGC+TGG - chr2_4:62475084-62475103 Msa0341050:intron 45.0%
ATTGTCACCCAGCCAACATA+AGG + chr2_4:62475095-62475114 None:intergenic 45.0%
!!! TTTTTTATTTTTGTATTTTT+AGG - chr2_4:62472721-62472740 Msa0341050:intron 5.0%
!!! TTTTTATTTTTGTATTTTTA+GGG - chr2_4:62472722-62472741 Msa0341050:intron 5.0%
!! ATATAATAATTGATTAAAAT+TGG + chr2_4:62472763-62472782 None:intergenic 5.0%
!!! AATTTTAATCAATTATTATA+TGG - chr2_4:62472762-62472781 Msa0341050:intron 5.0%
!!! ATTTTAATCAATTATTATAT+GGG - chr2_4:62472763-62472782 Msa0341050:intron 5.0%
GGGAAAGAGAGAACTGACCA+AGG + chr2_4:62472564-62472583 None:intergenic 50.0%
CATGCCTGAAGCAGAACACA+AGG + chr2_4:62473306-62473325 None:intergenic 50.0%
AGTAAGGATCCAATTCGCGC+AGG - chr2_4:62473621-62473640 Msa0341050:intron 50.0%
ACAATCTCTCCTGCGCGAAT+TGG + chr2_4:62473633-62473652 None:intergenic 50.0%
! TTGTTCACAGTGCTGGATGG+AGG - chr2_4:62474016-62474035 Msa0341050:intron 50.0%
! TGTTCACAGTGCTGGATGGA+GGG - chr2_4:62474017-62474036 Msa0341050:intron 50.0%
ACCCACACCCAAATCAAGCT+TGG + chr2_4:62474120-62474139 None:intergenic 50.0%
TGAAAGAGGAGATACTGGGG+AGG - chr2_4:62474482-62474501 Msa0341050:intron 50.0%
GACAGGCTACTGTATGCTCA+TGG - chr2_4:62474717-62474736 Msa0341050:intron 50.0%
TGTATGCTCATGGCCAGCTT+TGG - chr2_4:62474727-62474746 Msa0341050:intron 50.0%
!! GCTGCAAAGGCACCACATTA+TGG - chr2_4:62474749-62474768 Msa0341050:intron 50.0%
CAAGGCTAACAGCCTGAGTG+AGG + chr2_4:62472546-62472565 None:intergenic 55.0%
! CTCACTCAGGCTGTTAGCCT+TGG - chr2_4:62472544-62472563 Msa0341050:intron 55.0%
TCGGAATCTCTCGCCCCTAA+AGG + chr2_4:62473812-62473831 None:intergenic 55.0%
! ATGGCCAGCTTTGGCTGCAA+AGG - chr2_4:62474736-62474755 Msa0341050:intron 55.0%
GATCCGTCAGGTCCTCACTC+AGG - chr2_4:62472531-62472550 Msa0341050:intron 60.0%
CAGCCTGAGTGAGGACCTGA+CGG + chr2_4:62472537-62472556 None:intergenic 60.0%
GGTGCCTTTGCAGCCAAAGC+TGG + chr2_4:62474743-62474762 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 62472316 62475620 62472316 ID=Msa0341050;Name=Msa0341050
chr2_4 mRNA 62472316 62475620 62472316 ID=Msa0341050-mRNA-1;Parent=Msa0341050;Name=Msa0341050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=171|1|1|1|1|1|8|176|180
chr2_4 exon 62472316 62472542 62472316 ID=Msa0341050-mRNA-1:exon:19886;Parent=Msa0341050-mRNA-1
chr2_4 exon 62472794 62472851 62472794 ID=Msa0341050-mRNA-1:exon:19885;Parent=Msa0341050-mRNA-1
chr2_4 exon 62473152 62473239 62473152 ID=Msa0341050-mRNA-1:exon:19884;Parent=Msa0341050-mRNA-1
chr2_4 exon 62473414 62473459 62473414 ID=Msa0341050-mRNA-1:exon:19883;Parent=Msa0341050-mRNA-1
chr2_4 exon 62474085 62474120 62474085 ID=Msa0341050-mRNA-1:exon:19882;Parent=Msa0341050-mRNA-1
chr2_4 exon 62474268 62474339 62474268 ID=Msa0341050-mRNA-1:exon:19881;Parent=Msa0341050-mRNA-1
chr2_4 exon 62474503 62474615 62474503 ID=Msa0341050-mRNA-1:exon:19880;Parent=Msa0341050-mRNA-1
chr2_4 exon 62475371 62475620 62475371 ID=Msa0341050-mRNA-1:exon:19879;Parent=Msa0341050-mRNA-1
chr2_4 five_prime_UTR 62475450 62475620 62475450 ID=Msa0341050-mRNA-1:five_prime_utr;Parent=Msa0341050-mRNA-1
chr2_4 CDS 62475371 62475449 62475371 ID=Msa0341050-mRNA-1:cds;Parent=Msa0341050-mRNA-1
chr2_4 CDS 62474503 62474615 62474503 ID=Msa0341050-mRNA-1:cds;Parent=Msa0341050-mRNA-1
chr2_4 CDS 62474268 62474339 62474268 ID=Msa0341050-mRNA-1:cds;Parent=Msa0341050-mRNA-1
chr2_4 CDS 62474085 62474120 62474085 ID=Msa0341050-mRNA-1:cds;Parent=Msa0341050-mRNA-1
chr2_4 CDS 62473414 62473459 62473414 ID=Msa0341050-mRNA-1:cds;Parent=Msa0341050-mRNA-1
chr2_4 CDS 62473152 62473239 62473152 ID=Msa0341050-mRNA-1:cds;Parent=Msa0341050-mRNA-1
chr2_4 CDS 62472794 62472851 62472794 ID=Msa0341050-mRNA-1:cds;Parent=Msa0341050-mRNA-1
chr2_4 CDS 62472492 62472542 62472492 ID=Msa0341050-mRNA-1:cds;Parent=Msa0341050-mRNA-1
chr2_4 three_prime_UTR 62472316 62472491 62472316 ID=Msa0341050-mRNA-1:three_prime_utr;Parent=Msa0341050-mRNA-1
Gene Sequence

>Msa0341050

ATGGGTTTCGTTGGTGACACTGTCGATTCCATCAAATCTCTTCAGATCCGTCAGGTCCTCACTCAGGCTGTTAGCCTTGGCATGATTGTTACGTCTGCACTGATAATATGGAAGGCATTGATGTGCATCACTGGCAGTGAATCTCCTGTTGTCGTTGTTCTTTCTGGAAGTATGGAACCGGGATTCAAACGTGGGGACATCTTGTTCTTACACATGAGTAAGGATCCAATTCGCGCAGGAGAGATTGTTGTATTTAATATAGATGGGCGAGAGATTCCGATCGTGCATCGTGTAATTAAGGTACATGAAAGAGGAGATACTGGGGAGGTTGATGTTCTCACAAAAGGAGATAACAACTATGGGGATGACAGGCTACTGTATGCTCATGGCCAGCTTTGGCTGCAAAGGCACCACATTATGGGTAGAGCTGTTGGGTTCTTACCTTATGTTGGCTGGGTGACAATTATCATGACTGAAAAACCTATCATCAAGTATATTCTCATCGGTGCTTTGGGGTTGCTCGTGATAACTTCAAAAGAGTAA

Protein sequence

>Msa0341050

MGFVGDTVDSIKSLQIRQVLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNIDGREIPIVHRVIKVHERGDTGEVDVLTKGDNNYGDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKE*