Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100240 | GAU26000.1 | 91.746 | 315 | 3 | 2 | 1 | 292 | 1 | 315 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100240 | sp|Q9LHA4|VA0D2_ARATH | 78.063 | 351 | 18 | 2 | 1 | 292 | 1 | 351 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100240 | A0A2Z6MQZ3 | 91.746 | 315 | 3 | 2 | 1 | 292 | 1 | 315 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024210 | Msa1100240 | 0.829623 | 4.640725e-55 | -8.615850e-47 |
| Msa0033110 | Msa1100240 | -0.802900 | 4.504455e-49 | -8.615850e-47 |
| Msa0090360 | Msa1100240 | -0.806627 | 7.505044e-50 | -8.615850e-47 |
| Msa0091410 | Msa1100240 | -0.802681 | 4.999068e-49 | -8.615850e-47 |
| Msa0100740 | Msa1100240 | -0.802550 | 5.319930e-49 | -8.615850e-47 |
| Msa0120040 | Msa1100240 | 0.809445 | 1.885237e-50 | -8.615850e-47 |
| Msa0639310 | Msa1100240 | -0.827386 | 1.609667e-54 | -8.615850e-47 |
| Msa0661190 | Msa1100240 | 0.810825 | 9.509349e-51 | -8.615850e-47 |
| Msa0661300 | Msa1100240 | -0.805774 | 1.134977e-49 | -8.615850e-47 |
| Msa0709500 | Msa1100240 | -0.801838 | 7.452901e-49 | -8.615850e-47 |
| Msa0750170 | Msa1100240 | -0.807128 | 5.880000e-50 | -8.615850e-47 |
| Msa0808270 | Msa1100240 | -0.808404 | 3.148783e-50 | -8.615850e-47 |
| Msa0833190 | Msa1100240 | 0.805234 | 1.473084e-49 | -8.615850e-47 |
| Msa0137840 | Msa1100240 | -0.818064 | 2.382127e-52 | -8.615850e-47 |
| Msa0184040 | Msa1100240 | -0.812830 | 3.480627e-51 | -8.615850e-47 |
| Msa0184780 | Msa1100240 | -0.810514 | 1.109810e-50 | -8.615850e-47 |
| Msa0207670 | Msa1100240 | -0.807139 | 5.847595e-50 | -8.615850e-47 |
| Msa0209350 | Msa1100240 | -0.811860 | 5.667985e-51 | -8.615850e-47 |
| Msa0209500 | Msa1100240 | -0.832967 | 6.986399e-56 | -8.615850e-47 |
| Msa0229490 | Msa1100240 | 0.822846 | 1.903757e-53 | -8.615850e-47 |
| Msa0231980 | Msa1100240 | -0.814352 | 1.609824e-51 | -8.615850e-47 |
| Msa0232050 | Msa1100240 | -0.831403 | 1.702639e-55 | -8.615850e-47 |
| Msa0376300 | Msa1100240 | -0.815865 | 7.426595e-52 | -8.615850e-47 |
| Msa0376310 | Msa1100240 | -0.817080 | 3.968977e-52 | -8.615850e-47 |
| Msa0471440 | Msa1100240 | -0.823401 | 1.412710e-53 | -8.615850e-47 |
| Msa1006120 | Msa1100240 | 0.813428 | 2.572785e-51 | -8.615850e-47 |
| Msa1081150 | Msa1100240 | -0.805310 | 1.419671e-49 | -8.615850e-47 |
| Msa1081930 | Msa1100240 | -0.800591 | 1.341080e-48 | -8.615850e-47 |
| Msa1100240 | Msa1104140 | -0.800274 | 1.556351e-48 | -8.615850e-47 |
| Msa1100240 | Msa1126830 | -0.813495 | 2.487305e-51 | -8.615850e-47 |
| Msa1100240 | Msa1163650 | 0.823075 | 1.683389e-53 | -8.615850e-47 |
| Msa1100240 | Msa1165940 | -0.815796 | 7.695520e-52 | -8.615850e-47 |
| Msa1100240 | Msa1171360 | -0.801657 | 8.119850e-49 | -8.615850e-47 |
| Msa1100240 | Msa1191890 | 0.820835 | 5.560802e-53 | -8.615850e-47 |
| Msa1100240 | Msa1237940 | -0.811800 | 5.840198e-51 | -8.615850e-47 |
| Msa1100240 | Msa1242580 | 0.808709 | 2.711194e-50 | -8.615850e-47 |
| Msa1100240 | Msa1255040 | 0.823532 | 1.316416e-53 | -8.615850e-47 |
| Msa1100240 | Msa1294610 | 0.802020 | 6.840146e-49 | -8.615850e-47 |
| Msa1100240 | Msa1295490 | 0.800350 | 1.502189e-48 | -8.615850e-47 |
| Msa1100240 | Msa1296830 | -0.833701 | 4.583946e-56 | -8.615850e-47 |
| Msa1100240 | Msa1310770 | 0.819925 | 8.988534e-53 | -8.615850e-47 |
| Msa1100240 | Msa1367590 | -0.812115 | 4.985600e-51 | -8.615850e-47 |
| Msa1100240 | Msa1368120 | -0.818045 | 2.405668e-52 | -8.615850e-47 |
| Msa1100240 | Msa1375560 | -0.800219 | 1.597103e-48 | -8.615850e-47 |
| Msa1100240 | Msa1376090 | 0.813833 | 2.094874e-51 | -8.615850e-47 |
| Msa1100240 | Msa1377540 | 0.814743 | 1.319023e-51 | -8.615850e-47 |
| Msa1100240 | Msa1391410 | -0.813503 | 2.476227e-51 | -8.615850e-47 |
| Msa1100240 | Msa1428880 | -0.808587 | 2.878183e-50 | -8.615850e-47 |
| Msa1100240 | Msa1433390 | -0.819658 | 1.034432e-52 | -8.615850e-47 |
| Msa1100240 | Msa1453780 | 0.805415 | 1.349677e-49 | -8.615850e-47 |
| Msa1100240 | Msa1457920 | -0.813417 | 2.586732e-51 | -8.615850e-47 |
| Msa1100240 | Msa1461280 | -0.806051 | 9.924500e-50 | -8.615850e-47 |
| Msa0242410 | Msa1100240 | -0.802666 | 5.034253e-49 | -8.615850e-47 |
| Msa0300120 | Msa1100240 | -0.811117 | 8.219890e-51 | -8.615850e-47 |
| Msa0306210 | Msa1100240 | 0.802282 | 6.041925e-49 | -8.615850e-47 |
| Msa0547160 | Msa1100240 | -0.807843 | 4.145679e-50 | -8.615850e-47 |
| Msa0581110 | Msa1100240 | -0.814113 | 1.817612e-51 | -8.615850e-47 |
| Msa0586520 | Msa1100240 | 0.814403 | 1.568601e-51 | -8.615850e-47 |
| Msa0842830 | Msa1100240 | -0.806259 | 8.971342e-50 | -8.615850e-47 |
| Msa0867520 | Msa1100240 | 0.835997 | 1.211018e-56 | -8.615850e-47 |
| Msa0942560 | Msa1100240 | 0.822366 | 2.461540e-53 | -8.615850e-47 |
| Msa0968590 | Msa1100240 | -0.820480 | 6.710181e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100240 | MtrunA17_Chr7g0216811 | 82.906 | 351 | 1 | 2 | 1 | 292 | 1 | 351 | 0.0 | 578 |
| Msa1100240 | MtrunA17_Chr7g0216691 | 66.019 | 206 | 9 | 3 | 61 | 205 | 9 | 214 | 1.15e-81 | 245 |
| Msa1100240 | MtrunA17_Chr7g0216711 | 97.115 | 104 | 2 | 1 | 189 | 292 | 28 | 130 | 7.91e-69 | 209 |
| Msa1100240 | MtrunA17_Chr7g0216741 | 61.749 | 183 | 31 | 4 | 129 | 292 | 8 | 170 | 3.86e-68 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100240 | AT3G28715.1 | 78.063 | 351 | 18 | 2 | 1 | 292 | 1 | 351 | 0.0 | 555 |
| Msa1100240 | AT3G28710.1 | 77.778 | 351 | 19 | 2 | 1 | 292 | 1 | 351 | 0.0 | 554 |
| Msa1100240 | AT3G28715.2 | 75.499 | 351 | 19 | 3 | 1 | 292 | 1 | 343 | 0.0 | 530 |
Find 92 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATATGCGGGAGCTTTAC+AGG | 0.265424 | 7_3:-29725673 | Msa1100240:CDS |
| ATCCGTACATGGTGGGAAAT+TGG | 0.289005 | 7_3:+29728702 | None:intergenic |
| CTTAGTACTTTACCTATTGA+TGG | 0.301406 | 7_3:+29725139 | None:intergenic |
| AAAATCTTCTGTAATATAGA+TGG | 0.306956 | 7_3:-29723582 | Msa1100240:three_prime_UTR |
| AATGAATTCGGGTCGGGTTA+TGG | 0.330646 | 7_3:+29728730 | None:intergenic |
| AAACTTTGATAGATTTGTTC+AGG | 0.335017 | 7_3:-29723459 | Msa1100240:three_prime_UTR |
| TGTAATCATCAACCAGCTTA+AGG | 0.351304 | 7_3:+29726178 | None:intergenic |
| AAATTGGATCTGAATGAATT+CGG | 0.351578 | 7_3:+29728718 | None:intergenic |
| CGCGTAGGTTCGTGCTGTTA+TGG | 0.355937 | 7_3:-29724105 | Msa1100240:intron |
| TTATAGCTTGTATGTTCGTT+TGG | 0.364191 | 7_3:-29723681 | Msa1100240:three_prime_UTR |
| CATCTCTCTGCTACTGAGTA+TGG | 0.378117 | 7_3:-29728548 | Msa1100240:CDS |
| TTGCTTAGCATTTGAGCAAC+AGG | 0.380262 | 7_3:-29723985 | Msa1100240:intron |
| TCTTCGCATATATGAGGTTA+AGG | 0.390572 | 7_3:-29723812 | Msa1100240:CDS |
| AAAATCTGTAAAAGTCTTCA+AGG | 0.413711 | 7_3:+29725350 | None:intergenic |
| GCAAGCTCCTCATGACCATA+TGG | 0.415911 | 7_3:+29724875 | None:intergenic |
| TTCGGGTCGGGTTATGGAAA+TGG | 0.420726 | 7_3:+29728736 | None:intergenic |
| CTGTGTTCTTCGCATATATG+AGG | 0.433817 | 7_3:-29723818 | Msa1100240:CDS |
| GACCTCTGACGATTGCTTCA+AGG | 0.445385 | 7_3:+29728645 | None:intergenic |
| GTAATCATCAACCAGCTTAA+GGG | 0.451926 | 7_3:+29726179 | None:intergenic |
| AATTGGATCTGAATGAATTC+GGG | 0.454149 | 7_3:+29728719 | None:intergenic |
| ATACGATAACTTAGCAAAGA+TGG | 0.456824 | 7_3:+29724061 | None:intergenic |
| CTTCGCATATATGAGGTTAA+GGG | 0.463671 | 7_3:-29723811 | Msa1100240:CDS |
| ATTTCTAACAGCTACCCATA+TGG | 0.467809 | 7_3:-29724890 | Msa1100240:intron |
| TTGACAAAGGTTCTGTAGCT+TGG | 0.470359 | 7_3:+29726142 | None:intergenic |
| ATCAGCGGTGGTTAACAAAC+CGG | 0.470394 | 7_3:+29728616 | None:intergenic |
| ATCTTTGCTAAGTTATCGTA+TGG | 0.475190 | 7_3:-29724059 | Msa1100240:CDS |
| AGAATGCCTTGTCAAGCATC+TGG | 0.476278 | 7_3:+29724030 | None:intergenic |
| GGTTCTTGTTGACACTCCTC+TGG | 0.476594 | 7_3:-29725648 | Msa1100240:CDS |
| TCTCCTCAGTATTGCCACTC+TGG | 0.481860 | 7_3:-29725705 | Msa1100240:intron |
| GTTATTCGCAAACAGAAACT+TGG | 0.488915 | 7_3:-29725230 | Msa1100240:intron |
| ATCCAATTTCCCACCATGTA+CGG | 0.494876 | 7_3:-29728704 | Msa1100240:exon |
| CTGTTAATATTACCATCAAT+AGG | 0.504459 | 7_3:-29725151 | Msa1100240:intron |
| GTAATGCACTCAGAGAAGTA+TGG | 0.507766 | 7_3:+29725623 | None:intergenic |
| GATCTGAATGAATTCGGGTC+GGG | 0.511096 | 7_3:+29728724 | None:intergenic |
| ATATATGAGGTTAAGGGAGC+AGG | 0.511670 | 7_3:-29723805 | Msa1100240:CDS |
| TATCAGCCTCAAAAGCTAGA+AGG | 0.516324 | 7_3:+29725180 | None:intergenic |
| TCGGGTTATGGAAATGGATC+GGG | 0.529232 | 7_3:+29728742 | None:intergenic |
| GTCTCTAATGATCGGCAACT+CGG | 0.530246 | 7_3:+29723631 | None:intergenic |
| ACATGAACATTGAAATAATG+AGG | 0.537251 | 7_3:-29725393 | Msa1100240:CDS |
| GGCAGTTGCTCAGAATATGC+GGG | 0.539064 | 7_3:-29725684 | Msa1100240:CDS |
| CTCCTCTCATTCTCTGAAGG+AGG | 0.542497 | 7_3:-29728783 | Msa1100240:five_prime_UTR |
| ACATTTCTCCACAATTGTTG+TGG | 0.543805 | 7_3:+29726203 | None:intergenic |
| TTAGCAAAGATGGATTGATA+AGG | 0.544322 | 7_3:+29724071 | None:intergenic |
| GTCGGGTTATGGAAATGGAT+CGG | 0.548455 | 7_3:+29728741 | None:intergenic |
| CATAGCTTCGAATCCGTACA+TGG | 0.553153 | 7_3:+29728691 | None:intergenic |
| AAATCTTCTGTAATATAGAT+GGG | 0.553782 | 7_3:-29723581 | Msa1100240:three_prime_UTR |
| CACCTCCTTCAGAGAATGAG+AGG | 0.554227 | 7_3:+29728781 | None:intergenic |
| ATCGTCAGAGGTCATCGCTC+CGG | 0.555078 | 7_3:-29728635 | Msa1100240:CDS |
| ATACGTGATATACTCTAAGA+AGG | 0.558003 | 7_3:+29726119 | None:intergenic |
| GCAAAGATGGATTGATAAGG+AGG | 0.559317 | 7_3:+29724074 | None:intergenic |
| TATGCGGGAGCTTTACAGGC+TGG | 0.560140 | 7_3:-29725669 | Msa1100240:CDS |
| CTTCTCTAGTCTCTAATGAT+CGG | 0.562844 | 7_3:+29723623 | None:intergenic |
| GCTTGACAAGGCATTCTATG+AGG | 0.564403 | 7_3:-29724024 | Msa1100240:CDS |
| GATGCATCTTGATATCATCA+AGG | 0.565033 | 7_3:+29728567 | None:intergenic |
| CAAGGCATTCTATGAGGAGG+AGG | 0.565752 | 7_3:-29724018 | Msa1100240:CDS |
| TATGGTCCTTATCTCCAAAA+CGG | 0.566062 | 7_3:-29728530 | Msa1100240:intron |
| GAGATGATGTTGAAAGTGCC+TGG | 0.566064 | 7_3:+29728803 | None:intergenic |
| TCAGAGAAGTATGGCGCCAG+AGG | 0.569493 | 7_3:+29725632 | None:intergenic |
| AATGAGGAACACTCTTTACA+AGG | 0.571212 | 7_3:-29725377 | Msa1100240:CDS |
| GTAACCGCCATGGATGTTGA+AGG | 0.571667 | 7_3:+29728667 | None:intergenic |
| CATCTCCTCTCATTCTCTGA+AGG | 0.571794 | 7_3:-29728786 | Msa1100240:five_prime_UTR |
| CAAGCTCCTCATGACCATAT+GGG | 0.572988 | 7_3:+29724876 | None:intergenic |
| TGTCTGTGAGGACATTGATC+AGG | 0.574655 | 7_3:-29724852 | Msa1100240:intron |
| ATTGCATACCACAACAATTG+TGG | 0.577120 | 7_3:-29726211 | Msa1100240:CDS |
| ATTCGCAAACAGAAACTTGG+AGG | 0.580049 | 7_3:-29725227 | Msa1100240:intron |
| TGGCAGTTGCTCAGAATATG+CGG | 0.580523 | 7_3:-29725685 | Msa1100240:CDS |
| ATGCATCTTGATATCATCAA+GGG | 0.582404 | 7_3:+29728568 | None:intergenic |
| GGATCTGAATGAATTCGGGT+CGG | 0.589165 | 7_3:+29728723 | None:intergenic |
| CTCTGAGTGCATTACATCTG+AGG | 0.589763 | 7_3:-29725615 | Msa1100240:intron |
| GCTATGACCTTCAACATCCA+TGG | 0.599491 | 7_3:-29728674 | Msa1100240:CDS |
| GTGTAGAAGCACTACAAACC+AGG | 0.601578 | 7_3:-29728821 | Msa1100240:five_prime_UTR |
| GGAGAAATGTACCCTTAAGC+TGG | 0.602131 | 7_3:-29726190 | Msa1100240:CDS |
| CAAAGATGGATTGATAAGGA+GGG | 0.604520 | 7_3:+29724075 | None:intergenic |
| GAGATTGTTGTAATCAGCGG+TGG | 0.612888 | 7_3:+29728604 | None:intergenic |
| TTGCTTCAAGGTAACCGCCA+TGG | 0.615790 | 7_3:+29728657 | None:intergenic |
| ACAGAGATTGTTGTAATCAG+CGG | 0.619922 | 7_3:+29728601 | None:intergenic |
| AGGAGATCAGAAATCTTATG+TGG | 0.620146 | 7_3:-29723785 | Msa1100240:CDS |
| ACAATTGTTGTGGTATGCAA+TGG | 0.621263 | 7_3:+29726213 | None:intergenic |
| GCTTCGAATCCGTACATGGT+GGG | 0.624265 | 7_3:+29728695 | None:intergenic |
| CAGCTACCCATATGGTCATG+AGG | 0.630485 | 7_3:-29724882 | Msa1100240:CDS |
| AGCCTCAAAAGCTAGAAGGT+CGG | 0.630556 | 7_3:+29725184 | None:intergenic |
| TACCTTGAAGCAATCGTCAG+AGG | 0.632906 | 7_3:-29728647 | Msa1100240:CDS |
| TACTCTAAGAAGGTTGACAA+AGG | 0.647745 | 7_3:+29726129 | None:intergenic |
| TCTATGAGGAGGAGGTCAAG+AGG | 0.648159 | 7_3:-29724010 | Msa1100240:CDS |
| GTTGTGGTATGCAATGGAGA+TGG | 0.649223 | 7_3:+29726219 | None:intergenic |
| TATGTGGATTTCAGAATGTG+TGG | 0.651939 | 7_3:-29723769 | Msa1100240:CDS |
| TGACAAGGCATTCTATGAGG+AGG | 0.653753 | 7_3:-29724021 | Msa1100240:CDS |
| AGAGAGCCAGATGCTTGACA+AGG | 0.663160 | 7_3:-29724036 | Msa1100240:CDS |
| AGCTTCGAATCCGTACATGG+TGG | 0.665678 | 7_3:+29728694 | None:intergenic |
| TGAGGAGCTTGCTGTCTGTG+AGG | 0.672675 | 7_3:-29724864 | Msa1100240:CDS |
| ATTCTGAGCAACTGCCAGAG+TGG | 0.673304 | 7_3:+29725691 | None:intergenic |
| ATGACCTTCAACATCCATGG+CGG | 0.765368 | 7_3:-29728671 | Msa1100240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATAAAATTTTTCAGA+GGG | - | chr7_3:29725215-29725234 | Msa1100240:CDS | 10.0% |
| !! | ATACATTCTTAATTAAATTT+GGG | + | chr7_3:29725606-29725625 | None:intergenic | 10.0% |
| !! | CAATAAGAATAATAATAATA+AGG | + | chr7_3:29725978-29725997 | None:intergenic | 10.0% |
| !!! | TTTTAAAAATATTTAACTGA+AGG | + | chr7_3:29727315-29727334 | None:intergenic | 10.0% |
| !!! | TTTTGATAAAATTCATTGTT+TGG | - | chr7_3:29725066-29725085 | Msa1100240:intron | 15.0% |
| !!! | CTATTTATAAAATTTTTCAG+AGG | - | chr7_3:29725214-29725233 | Msa1100240:CDS | 15.0% |
| !! | GATACATTCTTAATTAAATT+TGG | + | chr7_3:29725607-29725626 | None:intergenic | 15.0% |
| !!! | AAATTATTGATTTATACTGA+TGG | - | chr7_3:29726026-29726045 | Msa1100240:intron | 15.0% |
| !!! | ATTTTACAATATATTGATGT+TGG | - | chr7_3:29726513-29726532 | Msa1100240:intron | 15.0% |
| !! | AACTAATCAAATATAAACAT+GGG | + | chr7_3:29726818-29726837 | None:intergenic | 15.0% |
| !! | AAACTAATCAAATATAAACA+TGG | + | chr7_3:29726819-29726838 | None:intergenic | 15.0% |
| !!! | GTTTTAATTGTTTGTAGATT+TGG | - | chr7_3:29723924-29723943 | Msa1100240:intron | 20.0% |
| !! | AATTTAAGTGCTTAGTTAAT+CGG | - | chr7_3:29724026-29724045 | Msa1100240:CDS | 20.0% |
| !!! | TTATTTATGCAAATTTTCAG+AGG | - | chr7_3:29724665-29724684 | Msa1100240:intron | 20.0% |
| !!! | TATTTATGCAAATTTTCAGA+GGG | - | chr7_3:29724666-29724685 | Msa1100240:intron | 20.0% |
| !!! | AAATTAAGTGCTTTTAATCT+TGG | - | chr7_3:29725295-29725314 | Msa1100240:intron | 20.0% |
| !!! | TTGAATCTTGAATTATTTTG+AGG | - | chr7_3:29725519-29725538 | Msa1100240:intron | 20.0% |
| !! | TTTAGATATTTGATCTACTT+TGG | - | chr7_3:29725775-29725794 | Msa1100240:intron | 20.0% |
| !! | TTGATGTTGAACAAAATAAA+GGG | + | chr7_3:29726724-29726743 | None:intergenic | 20.0% |
| !! | ATTGATGTTGAACAAAATAA+AGG | + | chr7_3:29726725-29726744 | None:intergenic | 20.0% |
| !! | ACTAATCAAATATAAACATG+GGG | + | chr7_3:29726817-29726836 | None:intergenic | 20.0% |
| !!! | GTATAATCTTTTTGTTTATC+TGG | - | chr7_3:29727176-29727195 | Msa1100240:intron | 20.0% |
| !!! | TTTGTAATTTTAGTTGCTTT+CGG | - | chr7_3:29727778-29727797 | Msa1100240:intron | 20.0% |
| !!! | TTTGTAATTTTAGTTGCTTT+CGG | - | chr7_3:29727778-29727797 | Msa1100240:intron | 20.0% |
| !! | AGAATATCATAATATTAAGC+TGG | - | chr7_3:29728341-29728360 | Msa1100240:intron | 20.0% |
| !! | AAAATCTTCTGTAATATAGA+TGG | - | chr7_3:29728702-29728721 | Msa1100240:exon | 20.0% |
| !! | AAATCTTCTGTAATATAGAT+GGG | - | chr7_3:29728703-29728722 | Msa1100240:exon | 20.0% |
| ! | AAATTGGATCTGAATGAATT+CGG | + | chr7_3:29723569-29723588 | None:intergenic | 25.0% |
| ! | AAAACATTTCTGATTAAGTG+AGG | + | chr7_3:29724469-29724488 | None:intergenic | 25.0% |
| !!! | AGAATTATTTCTGGAAACAT+TGG | - | chr7_3:29724556-29724575 | Msa1100240:intron | 25.0% |
| !!! | GAATTATTTCTGGAAACATT+GGG | - | chr7_3:29724557-29724576 | Msa1100240:intron | 25.0% |
| ! | TGTAACAAAATTAACTGCTA+AGG | - | chr7_3:29724750-29724769 | Msa1100240:intron | 25.0% |
| ! | CATTTCAAATCTACAAACAA+TGG | + | chr7_3:29724528-29724547 | None:intergenic | 25.0% |
| !! | TACATAAGTTTTTCATGACA+AGG | + | chr7_3:29725716-29725735 | None:intergenic | 25.0% |
| ! | TTACTGAAGTTCACAATAAA+GGG | + | chr7_3:29725831-29725850 | None:intergenic | 25.0% |
| ! | AAGTAATTAACTACACATGA+GGG | + | chr7_3:29726256-29726275 | None:intergenic | 25.0% |
| ! | CCATTAATGATTTGAGAAAA+TGG | + | chr7_3:29726279-29726298 | None:intergenic | 25.0% |
| !! | CCATTTTCTCAAATCATTAA+TGG | - | chr7_3:29726276-29726295 | Msa1100240:intron | 25.0% |
| ! | TTCAGTATATGTGTCATATT+TGG | - | chr7_3:29726308-29726327 | Msa1100240:intron | 25.0% |
| !!! | AATTTTTTACTCTGCAGATA+TGG | - | chr7_3:29726370-29726389 | Msa1100240:intron | 25.0% |
| !!! | AATGTTGTTTTGATTGTTAC+TGG | - | chr7_3:29726406-29726425 | Msa1100240:intron | 25.0% |
| !! | AAAGGGAAACAAATATTTTC+TGG | + | chr7_3:29726707-29726726 | None:intergenic | 25.0% |
| ! | ACATGAACATTGAAATAATG+AGG | - | chr7_3:29726891-29726910 | Msa1100240:intron | 25.0% |
| ! | AAAATCTGTAAAAGTCTTCA+AGG | + | chr7_3:29726937-29726956 | None:intergenic | 25.0% |
| ! | CTGTTAATATTACCATCAAT+AGG | - | chr7_3:29727133-29727152 | Msa1100240:intron | 25.0% |
| !!! | TTGTAGATGATTCTTGTTTT+AGG | - | chr7_3:29727702-29727721 | Msa1100240:intron | 25.0% |
| !!! | TGTAGATGATTCTTGTTTTA+GGG | - | chr7_3:29727703-29727722 | Msa1100240:intron | 25.0% |
| !!! | TTGTAGATGATTCTTGTTTT+AGG | - | chr7_3:29727702-29727721 | Msa1100240:intron | 25.0% |
| !!! | TGTAGATGATTCTTGTTTTA+GGG | - | chr7_3:29727703-29727722 | Msa1100240:intron | 25.0% |
| ! | GATGAATCTCAAATATTTCA+GGG | + | chr7_3:29728076-29728095 | None:intergenic | 25.0% |
| ! | TGATGAATCTCAAATATTTC+AGG | + | chr7_3:29728077-29728096 | None:intergenic | 25.0% |
| !!! | TTAGCCTTAATTCTTTTACA+TGG | - | chr7_3:29728151-29728170 | Msa1100240:intron | 25.0% |
| ! | TATCATAATATTAAGCTGGA+AGG | - | chr7_3:29728345-29728364 | Msa1100240:intron | 25.0% |
| ! | GCATTATAGTCAAATTAGTA+TGG | + | chr7_3:29728434-29728453 | None:intergenic | 25.0% |
| !! | AAACTTTGATAGATTTGTTC+AGG | - | chr7_3:29728825-29728844 | Msa1100240:five_prime_UTR | 25.0% |
| AATTGGATCTGAATGAATTC+GGG | + | chr7_3:29723568-29723587 | None:intergenic | 30.0% | |
| ATGCATCTTGATATCATCAA+GGG | + | chr7_3:29723719-29723738 | None:intergenic | 30.0% | |
| TTTATGATTATGCGAAATCG+CGG | - | chr7_3:29723895-29723914 | Msa1100240:intron | 30.0% | |
| !! | AGACATACACTTTTGATTGA+AGG | - | chr7_3:29724780-29724799 | Msa1100240:intron | 30.0% |
| !! | GACATACACTTTTGATTGAA+GGG | - | chr7_3:29724781-29724800 | Msa1100240:intron | 30.0% |
| !! | ACATACACTTTTGATTGAAG+GGG | - | chr7_3:29724782-29724801 | Msa1100240:intron | 30.0% |
| AAAATTGGCAAACCAAAAAG+TGG | + | chr7_3:29725459-29725478 | None:intergenic | 30.0% | |
| !!! | TTGGTTTGCCAATTTTGTAT+AGG | - | chr7_3:29725463-29725482 | Msa1100240:intron | 30.0% |
| TTCACAAATTGAATCTCGAT+TGG | - | chr7_3:29725679-29725698 | Msa1100240:CDS | 30.0% | |
| TACTGAAGTTCACAATAAAG+GGG | + | chr7_3:29725830-29725849 | None:intergenic | 30.0% | |
| CTTACTGAAGTTCACAATAA+AGG | + | chr7_3:29725832-29725851 | None:intergenic | 30.0% | |
| !! | AAAGTTTGCTGTTATTTCTG+CGG | - | chr7_3:29725884-29725903 | Msa1100240:intron | 30.0% |
| ! | ATACGTGATATACTCTAAGA+AGG | + | chr7_3:29726168-29726187 | None:intergenic | 30.0% |
| TATTTCCTTGAATATGTGTC+TGG | - | chr7_3:29726221-29726240 | Msa1100240:CDS | 30.0% | |
| GAAGTAATTAACTACACATG+AGG | + | chr7_3:29726257-29726276 | None:intergenic | 30.0% | |
| TGTAAAATGCACAGAAATCA+GGG | + | chr7_3:29726501-29726520 | None:intergenic | 30.0% | |
| TTGTAAAATGCACAGAAATC+AGG | + | chr7_3:29726502-29726521 | None:intergenic | 30.0% | |
| !!! | TTACTTTTTTTCTTGCCTGT+TGG | - | chr7_3:29726553-29726572 | Msa1100240:intron | 30.0% |
| !!! | TACTTTTTTTCTTGCCTGTT+GGG | - | chr7_3:29726554-29726573 | Msa1100240:intron | 30.0% |
| !! | TCTTGTTTATTTCTAGGACT+TGG | - | chr7_3:29726865-29726884 | Msa1100240:intron | 30.0% |
| ! | AGACTTTTACAGATTTTGTC+AGG | - | chr7_3:29726940-29726959 | Msa1100240:intron | 30.0% |
| TAGCTGACAAAAAAGAAACT+TGG | + | chr7_3:29726985-29727004 | None:intergenic | 30.0% | |
| !! | CATTAAAGTTGATGAAAGTC+AGG | + | chr7_3:29727035-29727054 | None:intergenic | 30.0% |
| CTTAGTACTTTACCTATTGA+TGG | + | chr7_3:29727148-29727167 | None:intergenic | 30.0% | |
| TCTCAATTGTGTTAAACGTT+TGG | - | chr7_3:29727466-29727485 | Msa1100240:intron | 30.0% | |
| GAAGCATACAAATTGAAAGA+CGG | + | chr7_3:29727520-29727539 | None:intergenic | 30.0% | |
| CTTTCAATTTGTATGCTTCT+TGG | - | chr7_3:29727521-29727540 | Msa1100240:intron | 30.0% | |
| CTAAGAAACACAATCTAGAA+GGG | + | chr7_3:29727548-29727567 | None:intergenic | 30.0% | |
| CTTCTAGATTGTGTTTCTTA+GGG | - | chr7_3:29727547-29727566 | Msa1100240:intron | 30.0% | |
| TATATTATTCCTCTTATCCC+TGG | - | chr7_3:29727628-29727647 | Msa1100240:intron | 30.0% | |
| ACAAGAATCATCTACAAGTA+GGG | + | chr7_3:29727699-29727718 | None:intergenic | 30.0% | |
| AACAAGAATCATCTACAAGT+AGG | + | chr7_3:29727700-29727719 | None:intergenic | 30.0% | |
| TATATTATTCCTCTTATCCC+TGG | - | chr7_3:29727628-29727647 | Msa1100240:intron | 30.0% | |
| ACAAGAATCATCTACAAGTA+GGG | + | chr7_3:29727699-29727718 | None:intergenic | 30.0% | |
| AACAAGAATCATCTACAAGT+AGG | + | chr7_3:29727700-29727719 | None:intergenic | 30.0% | |
| TACCAATTTCTTGTTGGTAT+CGG | - | chr7_3:29728050-29728069 | Msa1100240:intron | 30.0% | |
| AGAAATCAACTAGAAATCAG+TGG | + | chr7_3:29728116-29728135 | None:intergenic | 30.0% | |
| GCAACCATGTAAAAGAATTA+AGG | + | chr7_3:29728158-29728177 | None:intergenic | 30.0% | |
| !! | TTAGCAAAGATGGATTGATA+AGG | + | chr7_3:29728216-29728235 | None:intergenic | 30.0% |
| ATACGATAACTTAGCAAAGA+TGG | + | chr7_3:29728226-29728245 | None:intergenic | 30.0% | |
| ATCTTTGCTAAGTTATCGTA+TGG | - | chr7_3:29728225-29728244 | Msa1100240:intron | 30.0% | |
| ! | TTATAGCTTGTATGTTCGTT+TGG | - | chr7_3:29728603-29728622 | Msa1100240:CDS | 30.0% |
| ACAGAGATTGTTGTAATCAG+CGG | + | chr7_3:29723686-29723705 | None:intergenic | 35.0% | |
| GATGCATCTTGATATCATCA+AGG | + | chr7_3:29723720-29723739 | None:intergenic | 35.0% | |
| TATGGTCCTTATCTCCAAAA+CGG | - | chr7_3:29723754-29723773 | Msa1100240:CDS | 35.0% | |
| TCTATAGAGGTAACGATGTT+TGG | - | chr7_3:29724147-29724166 | Msa1100240:intron | 35.0% | |
| ! | GTAACGATGTTTGGTTTAGT+TGG | - | chr7_3:29724156-29724175 | Msa1100240:intron | 35.0% |
| AATGCTAATGACTGAACTGA+AGG | - | chr7_3:29724358-29724377 | Msa1100240:intron | 35.0% | |
| GTGATTTCGCATAATCATGA+AGG | + | chr7_3:29724498-29724517 | None:intergenic | 35.0% | |
| GCTAGCTGAAGAATTATTTC+TGG | - | chr7_3:29724547-29724566 | Msa1100240:intron | 35.0% | |
| GGACACATCAATTACATGTT+TGG | + | chr7_3:29724894-29724913 | None:intergenic | 35.0% | |
| AGTGTCTGCCTATACAAAAT+TGG | + | chr7_3:29725474-29725493 | None:intergenic | 35.0% | |
| !! | AAGTTTGCTGTTATTTCTGC+GGG | - | chr7_3:29725885-29725904 | Msa1100240:intron | 35.0% |
| ACAATTGTTGTGGTATGCAA+TGG | + | chr7_3:29726074-29726093 | None:intergenic | 35.0% | |
| ATTGCATACCACAACAATTG+TGG | - | chr7_3:29726073-29726092 | Msa1100240:intron | 35.0% | |
| ACATTTCTCCACAATTGTTG+TGG | + | chr7_3:29726084-29726103 | None:intergenic | 35.0% | |
| GTAATCATCAACCAGCTTAA+GGG | + | chr7_3:29726108-29726127 | None:intergenic | 35.0% | |
| TGTAATCATCAACCAGCTTA+AGG | + | chr7_3:29726109-29726128 | None:intergenic | 35.0% | |
| ! | TACTCTAAGAAGGTTGACAA+AGG | + | chr7_3:29726158-29726177 | None:intergenic | 35.0% |
| !! | GGCATTTTTCTAGAAGTTCT+TGG | + | chr7_3:29726453-29726472 | None:intergenic | 35.0% |
| TTCTTTGATGTATCTGCTCA+TGG | - | chr7_3:29726841-29726860 | Msa1100240:intron | 35.0% | |
| ! | CATGGCTCTTGTTTATTTCT+AGG | - | chr7_3:29726859-29726878 | Msa1100240:intron | 35.0% |
| AATGAGGAACACTCTTTACA+AGG | - | chr7_3:29726907-29726926 | Msa1100240:intron | 35.0% | |
| GAAACTTGGAAATCACAAAG+AGG | + | chr7_3:29726971-29726990 | None:intergenic | 35.0% | |
| !! | TAAAGTTGATGAAAGTCAGG+AGG | + | chr7_3:29727032-29727051 | None:intergenic | 35.0% |
| GTTATTCGCAAACAGAAACT+TGG | - | chr7_3:29727054-29727073 | Msa1100240:intron | 35.0% | |
| AGTTAGAGTACAACTTCCTA+CGG | + | chr7_3:29727270-29727289 | None:intergenic | 35.0% | |
| AGGAAGTTGTACTCTAACTT+CGG | - | chr7_3:29727271-29727290 | Msa1100240:intron | 35.0% | |
| GGTAGCTGTTAGAAATAAGT+TGG | + | chr7_3:29727390-29727409 | None:intergenic | 35.0% | |
| ATTTCTAACAGCTACCCATA+TGG | - | chr7_3:29727394-29727413 | Msa1100240:intron | 35.0% | |
| CCTAAGAAACACAATCTAGA+AGG | + | chr7_3:29727549-29727568 | None:intergenic | 35.0% | |
| CCTTCTAGATTGTGTTTCTT+AGG | - | chr7_3:29727546-29727565 | Msa1100240:intron | 35.0% | |
| TTTCGGCTACCAATTTCTTA+GGG | - | chr7_3:29727795-29727814 | Msa1100240:intron | 35.0% | |
| AATCTACTGCCCTAAGAAAT+TGG | + | chr7_3:29727807-29727826 | None:intergenic | 35.0% | |
| !! | CAAAGATGGATTGATAAGGA+GGG | + | chr7_3:29728212-29728231 | None:intergenic | 35.0% |
| TAAGCTGGAAGGATATTGAT+TGG | - | chr7_3:29728356-29728375 | Msa1100240:intron | 35.0% | |
| TCTTCGCATATATGAGGTTA+AGG | - | chr7_3:29728472-29728491 | Msa1100240:intron | 35.0% | |
| CTTCGCATATATGAGGTTAA+GGG | - | chr7_3:29728473-29728492 | Msa1100240:intron | 35.0% | |
| AGGAGATCAGAAATCTTATG+TGG | - | chr7_3:29728499-29728518 | Msa1100240:intron | 35.0% | |
| TATGTGGATTTCAGAATGTG+TGG | - | chr7_3:29728515-29728534 | Msa1100240:intron | 35.0% | |
| CTTCTCTAGTCTCTAATGAT+CGG | + | chr7_3:29728664-29728683 | None:intergenic | 35.0% | |
| ATCCAATTTCCCACCATGTA+CGG | - | chr7_3:29723580-29723599 | Msa1100240:three_prime_UTR | 40.0% | |
| ! | AAACGAAAAACGCACCGTTT+TGG | + | chr7_3:29723771-29723790 | None:intergenic | 40.0% |
| TGACGTGAGATCTTCTATAG+AGG | - | chr7_3:29724134-29724153 | Msa1100240:intron | 40.0% | |
| !!! | CTTTTGATTGAAGGGGTGTT+CGG | - | chr7_3:29724789-29724808 | Msa1100240:intron | 40.0% |
| ! | TTCTCATCGAAGGTGTATCA+TGG | + | chr7_3:29724938-29724957 | None:intergenic | 40.0% |
| TTGACAAAGGTTCTGTAGCT+TGG | + | chr7_3:29726145-29726164 | None:intergenic | 40.0% | |
| AGACACCAGACACATATTCA+AGG | + | chr7_3:29726229-29726248 | None:intergenic | 40.0% | |
| CTAGAAAAATGCCATCCACT+CGG | - | chr7_3:29726460-29726479 | Msa1100240:intron | 40.0% | |
| GTAATGCACTCAGAGAAGTA+TGG | + | chr7_3:29726664-29726683 | None:intergenic | 40.0% | |
| AAGTCAGGAGGAAATCACAA+GGG | + | chr7_3:29727020-29727039 | None:intergenic | 40.0% | |
| AAAGTCAGGAGGAAATCACA+AGG | + | chr7_3:29727021-29727040 | None:intergenic | 40.0% | |
| ATTCGCAAACAGAAACTTGG+AGG | - | chr7_3:29727057-29727076 | Msa1100240:intron | 40.0% | |
| TATCAGCCTCAAAAGCTAGA+AGG | + | chr7_3:29727107-29727126 | None:intergenic | 40.0% | |
| !!! | TAGCTTTTGAGGCTGATAGA+AGG | - | chr7_3:29727109-29727128 | Msa1100240:intron | 40.0% |
| !!! | AGCTTTTGAGGCTGATAGAA+GGG | - | chr7_3:29727110-29727129 | Msa1100240:intron | 40.0% |
| TATCTGGATATCCGCATAAC+TGG | - | chr7_3:29727192-29727211 | Msa1100240:intron | 40.0% | |
| ! | ACAGGTTTAAGGTCATGCAA+CGG | + | chr7_3:29727662-29727681 | None:intergenic | 40.0% |
| CTTTCGGCTACCAATTTCTT+AGG | - | chr7_3:29727794-29727813 | Msa1100240:intron | 40.0% | |
| ! | ACAGGTTTAAGGTCATGCAA+CGG | + | chr7_3:29727662-29727681 | None:intergenic | 40.0% |
| TTCGGCTACCAATTTCTTGT+TGG | - | chr7_3:29728044-29728063 | Msa1100240:intron | 40.0% | |
| !! | GCAAAGATGGATTGATAAGG+AGG | + | chr7_3:29728213-29728232 | None:intergenic | 40.0% |
| TTGCTTAGCATTTGAGCAAC+AGG | - | chr7_3:29728299-29728318 | Msa1100240:intron | 40.0% | |
| CTGTGTTCTTCGCATATATG+AGG | - | chr7_3:29728466-29728485 | Msa1100240:intron | 40.0% | |
| ATATATGAGGTTAAGGGAGC+AGG | - | chr7_3:29728479-29728498 | Msa1100240:intron | 40.0% | |
| !! | GTGTAGAAGCACTACAAACC+AGG | - | chr7_3:29723463-29723482 | Msa1100240:three_prime_UTR | 45.0% |
| !! | GAGATGATGTTGAAAGTGCC+TGG | + | chr7_3:29723484-29723503 | None:intergenic | 45.0% |
| CATCTCCTCTCATTCTCTGA+AGG | - | chr7_3:29723498-29723517 | Msa1100240:three_prime_UTR | 45.0% | |
| TCGGGTTATGGAAATGGATC+GGG | + | chr7_3:29723545-29723564 | None:intergenic | 45.0% | |
| GTCGGGTTATGGAAATGGAT+CGG | + | chr7_3:29723546-29723565 | None:intergenic | 45.0% | |
| AATGAATTCGGGTCGGGTTA+TGG | + | chr7_3:29723557-29723576 | None:intergenic | 45.0% | |
| GATCTGAATGAATTCGGGTC+GGG | + | chr7_3:29723563-29723582 | None:intergenic | 45.0% | |
| GGATCTGAATGAATTCGGGT+CGG | + | chr7_3:29723564-29723583 | None:intergenic | 45.0% | |
| ! | ATCCGTACATGGTGGGAAAT+TGG | + | chr7_3:29723585-29723604 | None:intergenic | 45.0% |
| CATAGCTTCGAATCCGTACA+TGG | + | chr7_3:29723596-29723615 | None:intergenic | 45.0% | |
| GCTATGACCTTCAACATCCA+TGG | - | chr7_3:29723610-29723629 | Msa1100240:three_prime_UTR | 45.0% | |
| ATGACCTTCAACATCCATGG+CGG | - | chr7_3:29723613-29723632 | Msa1100240:three_prime_UTR | 45.0% | |
| TACCTTGAAGCAATCGTCAG+AGG | - | chr7_3:29723637-29723656 | Msa1100240:three_prime_UTR | 45.0% | |
| ATCAGCGGTGGTTAACAAAC+CGG | + | chr7_3:29723671-29723690 | None:intergenic | 45.0% | |
| GAGATTGTTGTAATCAGCGG+TGG | + | chr7_3:29723683-29723702 | None:intergenic | 45.0% | |
| CATCTCTCTGCTACTGAGTA+TGG | - | chr7_3:29723736-29723755 | Msa1100240:CDS | 45.0% | |
| !!! | AACGCACCGTTTTGGAGATA+AGG | + | chr7_3:29723763-29723782 | None:intergenic | 45.0% |
| TATCCGACACATGTCAGTGT+CGG | + | chr7_3:29724915-29724934 | None:intergenic | 45.0% | |
| GCAATGACACTTCTCATCGA+AGG | + | chr7_3:29724948-29724967 | None:intergenic | 45.0% | |
| TTGGCAAACCAAAAAGTGGC+TGG | + | chr7_3:29725455-29725474 | None:intergenic | 45.0% | |
| ! | AATGGAGATGGTTCTGCAAG+AGG | + | chr7_3:29726056-29726075 | None:intergenic | 45.0% |
| GTTGTGGTATGCAATGGAGA+TGG | + | chr7_3:29726068-29726087 | None:intergenic | 45.0% | |
| GGAGAAATGTACCCTTAAGC+TGG | - | chr7_3:29726094-29726113 | Msa1100240:intron | 45.0% | |
| TTGGACATCTCTCTCATGCA+AGG | + | chr7_3:29726434-29726453 | None:intergenic | 45.0% | |
| ATACTGAGGAGAATCCCAAC+AGG | + | chr7_3:29726571-29726590 | None:intergenic | 45.0% | |
| TGGCAGTTGCTCAGAATATG+CGG | - | chr7_3:29726599-29726618 | Msa1100240:intron | 45.0% | |
| AGAATATGCGGGAGCTTTAC+AGG | - | chr7_3:29726611-29726630 | Msa1100240:intron | 45.0% | |
| CTCTGAGTGCATTACATCTG+AGG | - | chr7_3:29726669-29726688 | Msa1100240:intron | 45.0% | |
| AGCCTCAAAAGCTAGAAGGT+CGG | + | chr7_3:29727103-29727122 | None:intergenic | 45.0% | |
| AACCATGGATGCCAGTTATG+CGG | + | chr7_3:29727206-29727225 | None:intergenic | 45.0% | |
| GTTTCCATGTTGTGCAGCAT+TGG | - | chr7_3:29727223-29727242 | Msa1100240:intron | 45.0% | |
| AGTTCCAATGCTGCACAACA+TGG | + | chr7_3:29727230-29727249 | None:intergenic | 45.0% | |
| CAAGCTCCTCATGACCATAT+GGG | + | chr7_3:29727411-29727430 | None:intergenic | 45.0% | |
| TGTCTGTGAGGACATTGATC+AGG | - | chr7_3:29727432-29727451 | Msa1100240:intron | 45.0% | |
| GCAGTTAAACCAGGGATAAG+AGG | + | chr7_3:29727640-29727659 | None:intergenic | 45.0% | |
| ATGCAACGGCAGTTAAACCA+GGG | + | chr7_3:29727648-29727667 | None:intergenic | 45.0% | |
| GCAGTTAAACCAGGGATAAG+AGG | + | chr7_3:29727640-29727659 | None:intergenic | 45.0% | |
| ATGCAACGGCAGTTAAACCA+GGG | + | chr7_3:29727648-29727667 | None:intergenic | 45.0% | |
| GGCCGATACCAACAAGAAAT+TGG | + | chr7_3:29728055-29728074 | None:intergenic | 45.0% | |
| ! | TTTTACATGGTTGCTCGCGT+AGG | - | chr7_3:29728164-29728183 | Msa1100240:intron | 45.0% |
| AGAATGCCTTGTCAAGCATC+TGG | + | chr7_3:29728257-29728276 | None:intergenic | 45.0% | |
| ! | GCTTGACAAGGCATTCTATG+AGG | - | chr7_3:29728260-29728279 | Msa1100240:intron | 45.0% |
| ! | TGACAAGGCATTCTATGAGG+AGG | - | chr7_3:29728263-29728282 | Msa1100240:intron | 45.0% |
| TCTCTAATGATCGGCAACTC+GGG | + | chr7_3:29728655-29728674 | None:intergenic | 45.0% | |
| GTCTCTAATGATCGGCAACT+CGG | + | chr7_3:29728656-29728675 | None:intergenic | 45.0% | |
| ! | CTCCTCTCATTCTCTGAAGG+AGG | - | chr7_3:29723501-29723520 | Msa1100240:three_prime_UTR | 50.0% |
| CACCTCCTTCAGAGAATGAG+AGG | + | chr7_3:29723506-29723525 | None:intergenic | 50.0% | |
| TTCGGGTCGGGTTATGGAAA+TGG | + | chr7_3:29723551-29723570 | None:intergenic | 50.0% | |
| GCTTCGAATCCGTACATGGT+GGG | + | chr7_3:29723592-29723611 | None:intergenic | 50.0% | |
| AGCTTCGAATCCGTACATGG+TGG | + | chr7_3:29723593-29723612 | None:intergenic | 50.0% | |
| GTAACCGCCATGGATGTTGA+AGG | + | chr7_3:29723620-29723639 | None:intergenic | 50.0% | |
| TTGCTTCAAGGTAACCGCCA+TGG | + | chr7_3:29723630-29723649 | None:intergenic | 50.0% | |
| GACCTCTGACGATTGCTTCA+AGG | + | chr7_3:29723642-29723661 | None:intergenic | 50.0% | |
| CGAGCACTTACACTGACATG+TGG | - | chr7_3:29724088-29724107 | Msa1100240:CDS | 50.0% | |
| TGTCCGACACTGACATGTGT+CGG | - | chr7_3:29724909-29724928 | Msa1100240:intron | 50.0% | |
| !!! | TAGTGCAGCCAGCCACTTTT+TGG | - | chr7_3:29725444-29725463 | Msa1100240:intron | 50.0% |
| TGTCAAACATGCCGAGTGGA+TGG | + | chr7_3:29726474-29726493 | None:intergenic | 50.0% | |
| ATCCACTCGGCATGTTTGAC+AGG | - | chr7_3:29726473-29726492 | Msa1100240:intron | 50.0% | |
| TACCTGTCAAACATGCCGAG+TGG | + | chr7_3:29726478-29726497 | None:intergenic | 50.0% | |
| TCTCCTCAGTATTGCCACTC+TGG | - | chr7_3:29726579-29726598 | Msa1100240:intron | 50.0% | |
| ATTCTGAGCAACTGCCAGAG+TGG | + | chr7_3:29726596-29726615 | None:intergenic | 50.0% | |
| GGCAGTTGCTCAGAATATGC+GGG | - | chr7_3:29726600-29726619 | Msa1100240:intron | 50.0% | |
| GGTTCTTGTTGACACTCCTC+TGG | - | chr7_3:29726636-29726655 | Msa1100240:intron | 50.0% | |
| !!! | GTCCGACCTTCTAGCTTTTG+AGG | - | chr7_3:29727098-29727117 | Msa1100240:intron | 50.0% |
| ATCCGCATAACTGGCATCCA+TGG | - | chr7_3:29727201-29727220 | Msa1100240:intron | 50.0% | |
| GCTGCACAACATGGAAACCA+TGG | + | chr7_3:29727221-29727240 | None:intergenic | 50.0% | |
| AGCTTACCAGAGATGACCGT+AGG | - | chr7_3:29727251-29727270 | Msa1100240:intron | 50.0% | |
| CAACTTCCTACGGTCATCTC+TGG | + | chr7_3:29727260-29727279 | None:intergenic | 50.0% | |
| CAGCTACCCATATGGTCATG+AGG | - | chr7_3:29727402-29727421 | Msa1100240:intron | 50.0% | |
| GCAAGCTCCTCATGACCATA+TGG | + | chr7_3:29727412-29727431 | None:intergenic | 50.0% | |
| CATGCAACGGCAGTTAAACC+AGG | + | chr7_3:29727649-29727668 | None:intergenic | 50.0% | |
| CATGCAACGGCAGTTAAACC+AGG | + | chr7_3:29727649-29727668 | None:intergenic | 50.0% | |
| GACCTTAAACCTGTACCTCC+AGG | - | chr7_3:29727916-29727935 | Msa1100240:intron | 50.0% | |
| ! | CTCCTGGAGGTACAGGTTTA+AGG | + | chr7_3:29727921-29727940 | None:intergenic | 50.0% |
| AGAGAGCCAGATGCTTGACA+AGG | - | chr7_3:29728248-29728267 | Msa1100240:intron | 50.0% | |
| ! | CAAGGCATTCTATGAGGAGG+AGG | - | chr7_3:29728266-29728285 | Msa1100240:intron | 50.0% |
| TCTATGAGGAGGAGGTCAAG+AGG | - | chr7_3:29728274-29728293 | Msa1100240:intron | 50.0% | |
| ATCGTCAGAGGTCATCGCTC+CGG | - | chr7_3:29723649-29723668 | Msa1100240:three_prime_UTR | 55.0% | |
| CTGCCAGAGTGGCAATACTG+AGG | + | chr7_3:29726585-29726604 | None:intergenic | 55.0% | |
| TATGCGGGAGCTTTACAGGC+TGG | - | chr7_3:29726615-29726634 | Msa1100240:intron | 55.0% | |
| ! | TCAGAGAAGTATGGCGCCAG+AGG | + | chr7_3:29726655-29726674 | None:intergenic | 55.0% |
| !! | TGAGGAGCTTGCTGTCTGTG+AGG | - | chr7_3:29727420-29727439 | Msa1100240:intron | 55.0% |
| GACCTTAAACCTGTACCGCC+AGG | - | chr7_3:29727668-29727687 | Msa1100240:intron | 55.0% | |
| CTCCTGGCGGTACAGGTTTA+AGG | + | chr7_3:29727673-29727692 | None:intergenic | 55.0% | |
| TCTACAAGTAGGGCAGCTCC+TGG | + | chr7_3:29727689-29727708 | None:intergenic | 55.0% | |
| TCTACAAGTAGGGCAGCTCC+TGG | + | chr7_3:29727689-29727708 | None:intergenic | 55.0% | |
| ! | CGCGTAGGTTCGTGCTGTTA+TGG | - | chr7_3:29728179-29728198 | Msa1100240:intron | 55.0% |
| ACAAGTAGGGCAGCTCCTGG+CGG | + | chr7_3:29727686-29727705 | None:intergenic | 60.0% | |
| ACAAGTAGGGCAGCTCCTGG+AGG | + | chr7_3:29727686-29727705 | None:intergenic | 60.0% | |
| ! | AGGGCAGCTCCTGGAGGTAC+AGG | + | chr7_3:29727928-29727947 | None:intergenic | 65.0% |
| AGGGCAGCTCCTGGCGGTAC+AGG | + | chr7_3:29727680-29727699 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 29723451 | 29728855 | 29723451 | ID=Msa1100240;Name=Msa1100240 |
| chr7_3 | mRNA | 29723451 | 29728855 | 29723451 | ID=Msa1100240-mRNA-1;Parent=Msa1100240;Name=Msa1100240-mRNA-1;_AED=0.36;_eAED=0.36;_QI=144|0.71|0.87|1|0.85|1|8|268|292 |
| chr7_3 | exon | 29723451 | 29723850 | 29723451 | ID=Msa1100240-mRNA-1:exon:6363;Parent=Msa1100240-mRNA-1 |
| chr7_3 | exon | 29723986 | 29724120 | 29723986 | ID=Msa1100240-mRNA-1:exon:6362;Parent=Msa1100240-mRNA-1 |
| chr7_3 | exon | 29724853 | 29724901 | 29724853 | ID=Msa1100240-mRNA-1:exon:6361;Parent=Msa1100240-mRNA-1 |
| chr7_3 | exon | 29725152 | 29725237 | 29725152 | ID=Msa1100240-mRNA-1:exon:6360;Parent=Msa1100240-mRNA-1 |
| chr7_3 | exon | 29725345 | 29725425 | 29725345 | ID=Msa1100240-mRNA-1:exon:6359;Parent=Msa1100240-mRNA-1 |
| chr7_3 | exon | 29725616 | 29725718 | 29725616 | ID=Msa1100240-mRNA-1:exon:6358;Parent=Msa1100240-mRNA-1 |
| chr7_3 | exon | 29726132 | 29726243 | 29726132 | ID=Msa1100240-mRNA-1:exon:6357;Parent=Msa1100240-mRNA-1 |
| chr7_3 | exon | 29728531 | 29728855 | 29728531 | ID=Msa1100240-mRNA-1:exon:6356;Parent=Msa1100240-mRNA-1 |
| chr7_3 | five_prime_UTR | 29728712 | 29728855 | 29728712 | ID=Msa1100240-mRNA-1:five_prime_utr;Parent=Msa1100240-mRNA-1 |
| chr7_3 | CDS | 29728531 | 29728711 | 29728531 | ID=Msa1100240-mRNA-1:cds;Parent=Msa1100240-mRNA-1 |
| chr7_3 | CDS | 29726132 | 29726243 | 29726132 | ID=Msa1100240-mRNA-1:cds;Parent=Msa1100240-mRNA-1 |
| chr7_3 | CDS | 29725616 | 29725718 | 29725616 | ID=Msa1100240-mRNA-1:cds;Parent=Msa1100240-mRNA-1 |
| chr7_3 | CDS | 29725345 | 29725425 | 29725345 | ID=Msa1100240-mRNA-1:cds;Parent=Msa1100240-mRNA-1 |
| chr7_3 | CDS | 29725152 | 29725237 | 29725152 | ID=Msa1100240-mRNA-1:cds;Parent=Msa1100240-mRNA-1 |
| chr7_3 | CDS | 29724853 | 29724901 | 29724853 | ID=Msa1100240-mRNA-1:cds;Parent=Msa1100240-mRNA-1 |
| chr7_3 | CDS | 29723986 | 29724120 | 29723986 | ID=Msa1100240-mRNA-1:cds;Parent=Msa1100240-mRNA-1 |
| chr7_3 | CDS | 29723719 | 29723850 | 29723719 | ID=Msa1100240-mRNA-1:cds;Parent=Msa1100240-mRNA-1 |
| chr7_3 | three_prime_UTR | 29723451 | 29723718 | 29723451 | ID=Msa1100240-mRNA-1:three_prime_utr;Parent=Msa1100240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
