AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1310770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1310770 MtrunA17_Chr8g0337971 94.444 234 1 1 1 234 1 222 3.70e-162 447
Msa1310770 MtrunA17_Chr4g0016231 32.787 122 64 3 92 212 38 142 2.38e-12 63.2
Msa1310770 MtrunA17_Chr6g0466771 32.787 122 64 3 92 212 38 142 2.38e-12 63.2
Msa1310770 MtrunA17_Chr7g0221871 32.787 122 64 3 92 212 38 142 2.38e-12 63.2
Msa1310770 MtrunA17_Chr2g0324621 32.787 122 64 3 92 212 38 142 2.38e-12 63.2
Msa1310770 MtrunA17_CPg0492271 32.787 122 64 3 92 212 38 142 2.38e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1310770 AT1G16700.1 79.487 234 36 1 1 234 1 222 6.66e-135 378
Msa1310770 AT1G79010.1 77.778 234 40 1 1 234 1 222 1.19e-131 370
Msa1310770 ATCG01090.1 33.088 136 73 3 78 212 24 142 1.20e-14 69.7

Find 81 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGGCCATTGTTGTATTTA+TGG 0.165568 8_4:-7379034 Msa1310770:three_prime_UTR
TGAAAATTTGTATGGATTAA+TGG 0.224498 8_4:-7379081 Msa1310770:three_prime_UTR
TAGCCTTGAACTTTGGATAA+TGG 0.286265 8_4:-7378901 Msa1310770:three_prime_UTR
GAGAAACGACAGACCTAATT+TGG 0.303708 8_4:+7383803 None:intergenic
TCTGTAGAAAATTCAAAGTT+TGG 0.316476 8_4:+7379426 None:intergenic
CGAAGGAAATTTCAAAGGAT+TGG 0.317932 8_4:-7383211 Msa1310770:CDS
CTGCACAACCCTCAAAATTA+TGG 0.327667 8_4:-7383855 Msa1310770:CDS
TCCTCAGATCAACCTTCTTC+AGG 0.331392 8_4:-7384703 Msa1310770:intron
AACGATATTATCAGCGATAA+AGG 0.338868 8_4:+7379164 None:intergenic
AAAGAGAAGCTGCTTGAAAA+TGG 0.343625 8_4:-7379232 Msa1310770:CDS
AAACTTGTAGCCTTGAACTT+TGG 0.347146 8_4:-7378908 Msa1310770:three_prime_UTR
AATGGTCTTGAAAATTTGTA+TGG 0.358097 8_4:-7379089 Msa1310770:three_prime_UTR
CACCTCTACTCTACCAAATT+AGG 0.367504 8_4:-7383816 Msa1310770:intron
CTTCCACTCTTATAGGGAAA+TGG 0.373295 8_4:-7382188 Msa1310770:intron
CCTTCAACAATGGCATCAAC+TGG 0.381113 8_4:+7379450 None:intergenic
TCTTATAGGGAAATGGTTGC+AGG 0.386478 8_4:-7382181 Msa1310770:intron
CTCAATGGGCCTTTCTCAAA+TGG 0.395763 8_4:+7382916 None:intergenic
GTTTAGGCTGTGGCAGGTCA+AGG 0.399468 8_4:-7383879 Msa1310770:intron
TGCTTGAAAATGGTGATAGA+TGG 0.410918 8_4:-7379222 Msa1310770:CDS
TCGTTGGATCTCTGCTTATT+CGG 0.413670 8_4:-7379146 Msa1310770:three_prime_UTR
AGGGAAATGGTTGCAGGGTA+GGG 0.427984 8_4:-7382175 Msa1310770:CDS
ATCAATTATCCATTTGAGAA+AGG 0.435457 8_4:-7382925 Msa1310770:CDS
CCAGTTGATGCCATTGTTGA+AGG 0.439001 8_4:-7379450 Msa1310770:CDS
ATTTCAAAGGATTGGAGTAC+AGG 0.442999 8_4:-7383203 Msa1310770:intron
TTTCTCACCGAGCTTGTTCG+AGG 0.455559 8_4:-7383067 Msa1310770:CDS
TCAATTGTTATTGCTTGAGC+AGG 0.457553 8_4:+7379646 None:intergenic
GATAAAGGCTTTCAGATCTC+AGG 0.462781 8_4:+7379179 None:intergenic
TAGGGAAATGGTTGCAGGGT+AGG 0.474308 8_4:-7382176 Msa1310770:CDS
ATGCTTGTTTAGGCTGTGGC+AGG 0.482178 8_4:-7383885 Msa1310770:intron
CCACGGAAACGAGGACTCAA+TGG 0.482939 8_4:+7382901 None:intergenic
AAACCGCAGAGGACGAAGAA+AGG 0.486005 8_4:-7383244 Msa1310770:intron
CATTGAGTCCTCGTTTCCGT+GGG 0.492044 8_4:-7382900 Msa1310770:CDS
TTTATCGCTGATAATATCGT+TGG 0.495660 8_4:-7379162 Msa1310770:exon
CCATTGAGTCCTCGTTTCCG+TGG 0.498621 8_4:-7382901 Msa1310770:CDS
TTTAGGCTGTGGCAGGTCAA+GGG 0.501802 8_4:-7383878 Msa1310770:intron
AACCGCAGAGGACGAAGAAA+GGG 0.505696 8_4:-7383243 Msa1310770:intron
AGCAATAACAATTGAGGCTG+AGG 0.506884 8_4:-7379638 Msa1310770:CDS
CACGGAAACGAGGACTCAAT+GGG 0.507055 8_4:+7382902 None:intergenic
GGGAAATGGTTGCAGGGTAG+GGG 0.517751 8_4:-7382174 Msa1310770:CDS
GAGGCTGAGGAGCGTGAAGA+TGG 0.517969 8_4:-7379625 Msa1310770:CDS
TAAATAAAATGATCGGTGAA+TGG 0.519570 8_4:-7379107 Msa1310770:three_prime_UTR
GTTCCATTATCCAAAGTTCA+AGG 0.519995 8_4:+7378898 None:intergenic
AAAGTTTGGCCCTTCAACAA+TGG 0.520084 8_4:+7379440 None:intergenic
TGCTTGCAAACTTTGTGAAG+CGG 0.536589 8_4:-7382833 Msa1310770:intron
GAGAGAGAGATACCTGAAGA+AGG 0.539105 8_4:+7384691 None:intergenic
GCACTCAGAAGATATCCAAC+AGG 0.542096 8_4:-7382871 Msa1310770:CDS
TCTGAGATGAAGAGAAGAGA+GGG 0.542963 8_4:+7384756 None:intergenic
ATGCAACGTTCCTCTCCTGT+TGG 0.543622 8_4:+7382856 None:intergenic
ACTTGCGAAGGAAATTTCAA+AGG 0.546416 8_4:-7383216 Msa1310770:CDS
TCGTTTCGTGTTCCTCTCTG+TGG 0.558223 8_4:-7384730 Msa1310770:five_prime_UTR
AAATGGCCGCATTCTTAGCT+CGG 0.559379 8_4:-7384520 Msa1310770:CDS
GGGCTGGACTCCTCAAAGCC+CGG 0.562825 8_4:-7384821 None:intergenic
TGCTCAAGCAATAACAATTG+AGG 0.563934 8_4:-7379644 Msa1310770:CDS
ATGACCAAGTGCATCTATTG+TGG 0.582682 8_4:-7379492 Msa1310770:CDS
TTCTGAGTGCATGTTCCCCA+CGG 0.584009 8_4:+7382884 None:intergenic
CTTCAACAATGGCATCAACT+GGG 0.587038 8_4:+7379451 None:intergenic
CATTAGACCTCGAACAAGCT+CGG 0.587841 8_4:+7383060 None:intergenic
GCACTGATAAATAAAATGAT+CGG 0.591056 8_4:-7379114 Msa1310770:three_prime_UTR
GCTTGAAAATGGTGATAGAT+GGG 0.594111 8_4:-7379221 Msa1310770:CDS
CAGTTGATGCCATTGTTGAA+GGG 0.594171 8_4:-7379449 Msa1310770:CDS
GAGGAATCTTACAAGCTGGC+GGG 0.598298 8_4:+7384475 None:intergenic
TTACTGACCGAGTTGTCCTA+CGG 0.600425 8_4:+7379599 None:intergenic
ATGGCAGCCGTAGGACAACT+CGG 0.602662 8_4:-7379606 Msa1310770:intron
CTTATAGGGAAATGGTTGCA+GGG 0.614348 8_4:-7382180 Msa1310770:intron
ACCTGAAGAAGGTTGATCTG+AGG 0.617921 8_4:+7384702 None:intergenic
CTGAGATGAAGAGAAGAGAG+GGG 0.618759 8_4:+7384757 None:intergenic
CTCTGAGATGAAGAGAAGAG+AGG 0.620202 8_4:+7384755 None:intergenic
AGAGGAATCTTACAAGCTGG+CGG 0.622954 8_4:+7384474 None:intergenic
GACCTAATTTGGTAGAGTAG+AGG 0.629006 8_4:+7383814 None:intergenic
GGTAGGGGAAAGTAACGGTA+AGG 0.634293 8_4:-7382159 Msa1310770:intron
AAATCCACAATAGATGCACT+TGG 0.636535 8_4:+7379488 None:intergenic
ACATGCCATAAATACAACAA+TGG 0.637198 8_4:+7379029 None:intergenic
CAAGCGCACAATGTGTTACG+TGG 0.650745 8_4:+7384787 None:intergenic
GCATGTTCCCCACGGAAACG+AGG 0.652968 8_4:+7382892 None:intergenic
TGCAGGGTAGGGGAAAGTAA+CGG 0.680558 8_4:-7382164 Msa1310770:CDS
CAGAAGATATCCAACAGGAG+AGG 0.683452 8_4:-7382866 Msa1310770:CDS
ATTGAGTCCTCGTTTCCGTG+GGG 0.686086 8_4:-7382899 Msa1310770:CDS
AGCGTGAAGATGGCAGCCGT+AGG 0.695064 8_4:-7379615 Msa1310770:CDS
AGAAAGGGAGAAACTTGCGA+AGG 0.699091 8_4:-7383228 Msa1310770:CDS
AGATTTCCGAGCTAAGAATG+CGG 0.745512 8_4:+7384514 None:intergenic
TCTGAGGAGAATCCACAGAG+AGG 0.759220 8_4:+7384718 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATACCAATAAAAATATTA+AGG + chr8_4:7379692-7379711 None:intergenic 10.0%
!!! AAATTAGATTTTCTTATTAT+AGG + chr8_4:7381628-7381647 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTTGAG+AGG + chr8_4:7382335-7382354 None:intergenic 10.0%
!! AAAAAAGATATAAACAATTA+TGG + chr8_4:7384344-7384363 None:intergenic 10.0%
!! ATAGAGTAAAAAATAATAAG+AGG + chr8_4:7379230-7379249 None:intergenic 15.0%
!!! ATTAGATGTTTTTTATTGAT+GGG + chr8_4:7380263-7380282 None:intergenic 15.0%
!!! AATTAGATGTTTTTTATTGA+TGG + chr8_4:7380264-7380283 None:intergenic 15.0%
!! AAAAAATAGATATTCATCAA+GGG + chr8_4:7380407-7380426 None:intergenic 15.0%
!! AAAAAAATAGATATTCATCA+AGG + chr8_4:7380408-7380427 None:intergenic 15.0%
!! AAAATCAAATTGAAAATGAA+AGG + chr8_4:7380520-7380539 None:intergenic 15.0%
!! TAATTTAGATATTCCAAATA+AGG - chr8_4:7381135-7381154 Msa1310770:intron 15.0%
!!! ATTTTCTTATTATAGGAAAT+TGG + chr8_4:7381621-7381640 None:intergenic 15.0%
!! AAGAAAATCTAATTTCTTAA+TGG - chr8_4:7381633-7381652 Msa1310770:intron 15.0%
!! AGAAAATCTAATTTCTTAAT+GGG - chr8_4:7381634-7381653 Msa1310770:intron 15.0%
!! TAATTTAGATATTCCAAATA+AGG - chr8_4:7381135-7381154 Msa1310770:intron 15.0%
!! TAATTTAAATATCCCAAATA+AGG - chr8_4:7383484-7383503 Msa1310770:intron 15.0%
!! ATGGATATGTATAATATATT+TGG + chr8_4:7383884-7383903 None:intergenic 15.0%
!! TCAATATAAAGGAAATAAAA+AGG + chr8_4:7384296-7384315 None:intergenic 15.0%
!!! TCGTTCTTAATAGTTTTTTT+AGG + chr8_4:7379461-7379480 None:intergenic 20.0%
!!! GATGTCCTTAATATTTTTAT+TGG - chr8_4:7379684-7379703 Msa1310770:intron 20.0%
!! TTTATTGGTATAAGATTAAG+AGG - chr8_4:7379699-7379718 Msa1310770:intron 20.0%
!! AAAAATAGATATTCATCAAG+GGG + chr8_4:7380406-7380425 None:intergenic 20.0%
!! CATTGTTAAACTGAAAATAT+TGG + chr8_4:7380895-7380914 None:intergenic 20.0%
!! AGACAAATTTCTAATTCTTA+GGG + chr8_4:7381116-7381135 None:intergenic 20.0%
!! TAGACAAATTTCTAATTCTT+AGG + chr8_4:7381117-7381136 None:intergenic 20.0%
!!! ATCTAGATTTTATGCATAAT+CGG - chr8_4:7381234-7381253 Msa1310770:intron 20.0%
!! AGAGAGTTTGAATATAAAAT+TGG + chr8_4:7382231-7382250 None:intergenic 20.0%
!! TAATGTAGAATCAAATGTAT+AGG - chr8_4:7382385-7382404 Msa1310770:intron 20.0%
!!! ATAAACCTTTATTAGGTTTT+TGG - chr8_4:7382428-7382447 Msa1310770:intron 20.0%
!!! TTTGGAATATCTAAATTAGA+CGG + chr8_4:7381133-7381152 None:intergenic 20.0%
!!! AATAGCAGTTTGTTTTAATA+TGG - chr8_4:7382595-7382614 Msa1310770:intron 20.0%
!!! TGAAATGTTTTCTTTATAAG+TGG - chr8_4:7382622-7382641 Msa1310770:intron 20.0%
!!! TTTCAATATTTCAGGTTATT+AGG + chr8_4:7382806-7382825 None:intergenic 20.0%
!! TAACTAGATTTCAATATTTC+AGG + chr8_4:7382814-7382833 None:intergenic 20.0%
!! AAACTACATTTCAATATTTC+AGG + chr8_4:7383768-7383787 None:intergenic 20.0%
!! TTGAAATGTAGTTTATATAC+AGG - chr8_4:7383774-7383793 Msa1310770:intron 20.0%
!! TTTATTAATGGCTCAATTTA+TGG + chr8_4:7383833-7383852 None:intergenic 20.0%
!!! TTAGTAAGGGTATTTATTAA+TGG + chr8_4:7383845-7383864 None:intergenic 20.0%
!! GAAATGAAATATTGGAATAA+TGG + chr8_4:7383903-7383922 None:intergenic 20.0%
!! AAAACATGGAAATGAAATAT+TGG + chr8_4:7383911-7383930 None:intergenic 20.0%
!! ACTCATATAGTTCAATATAA+AGG + chr8_4:7384307-7384326 None:intergenic 20.0%
!!! TTATATGTTTTAACCGTTAA+AGG - chr8_4:7384414-7384433 Msa1310770:intron 20.0%
!!! TGAAAATTTGTATGGATTAA+TGG - chr8_4:7384602-7384621 Msa1310770:intron 20.0%
!!! GTTCCTCAAATTTTATTTTT+TGG - chr8_4:7384627-7384646 Msa1310770:intron 20.0%
!!! CTCAAATTTTATTTTTTGGT+GGG - chr8_4:7384631-7384650 Msa1310770:intron 20.0%
!! AATCGATTTATGAGTTTCTT+CGG + chr8_4:7379023-7379042 None:intergenic 25.0%
! TACCAAGCATTTCAAAAATT+AGG - chr8_4:7379053-7379072 Msa1310770:three_prime_UTR 25.0%
! ACCAAGCATTTCAAAAATTA+GGG - chr8_4:7379054-7379073 Msa1310770:three_prime_UTR 25.0%
! TGAATCGATAATTAGAAGAA+AGG + chr8_4:7379105-7379124 None:intergenic 25.0%
! TTTGATATAACATTCCATAG+TGG - chr8_4:7379515-7379534 Msa1310770:intron 25.0%
! TTGATATAACATTCCATAGT+GGG - chr8_4:7379516-7379535 Msa1310770:intron 25.0%
! AAACAAGCATAACAACAATA+AGG + chr8_4:7379788-7379807 None:intergenic 25.0%
!! TATTGTTGTTATGCTTGTTT+AGG - chr8_4:7379788-7379807 Msa1310770:intron 25.0%
!!! TGAGAATGATGTTTCTTTTT+TGG - chr8_4:7379997-7380016 Msa1310770:intron 25.0%
!! TTTTTATTGATGGGATTTTG+AGG + chr8_4:7380254-7380273 None:intergenic 25.0%
! TACATAATAAATTGCAAGCA+CGG + chr8_4:7380380-7380399 None:intergenic 25.0%
! AAAATAGATATTCATCAAGG+GGG + chr8_4:7380405-7380424 None:intergenic 25.0%
! TTAATCACGTTATGTAAAAG+AGG + chr8_4:7380544-7380563 None:intergenic 25.0%
! ACAGTTATAAAAGACACTTA+CGG + chr8_4:7380683-7380702 None:intergenic 25.0%
!! TAAGTGTCTTTTATAACTGT+TGG - chr8_4:7380683-7380702 Msa1310770:intron 25.0%
! ATAATTGATCTGCATAAATG+AGG + chr8_4:7380747-7380766 None:intergenic 25.0%
! ATCAATTATCCATTTGAGAA+AGG - chr8_4:7380758-7380777 Msa1310770:intron 25.0%
! TTCTATAGTTGAACTAGATT+TGG - chr8_4:7381073-7381092 Msa1310770:intron 25.0%
! TCTATAGTTGAACTAGATTT+GGG - chr8_4:7381074-7381093 Msa1310770:intron 25.0%
!! ATTTTATGCATAATCGGTAA+GGG - chr8_4:7381240-7381259 Msa1310770:intron 25.0%
! GCATATAAAATAGCATAAGT+AGG - chr8_4:7381330-7381349 Msa1310770:intron 25.0%
! AATGCCAAAATAGATGAAAA+TGG - chr8_4:7381361-7381380 Msa1310770:intron 25.0%
!! ACTTCCATTTTCATCTATTT+TGG + chr8_4:7381368-7381387 None:intergenic 25.0%
! AAATAGATGAAAATGGAAGT+AGG - chr8_4:7381368-7381387 Msa1310770:intron 25.0%
!! ATTACACAGAAATACGATTT+TGG - chr8_4:7381875-7381894 Msa1310770:intron 25.0%
!! TTACACAGAAATACGATTTT+GGG - chr8_4:7381876-7381895 Msa1310770:intron 25.0%
!!! CATAGCAGTTTGTTTTAATA+TGG - chr8_4:7381985-7382004 Msa1310770:intron 25.0%
! TATGGATAAACAATGCTATT+AGG - chr8_4:7382098-7382117 Msa1310770:intron 25.0%
! ACAATTCAGTCTCAAAATAT+AGG - chr8_4:7382137-7382156 Msa1310770:intron 25.0%
! TAACTAGATTTCAATGATTC+AGG + chr8_4:7382195-7382214 None:intergenic 25.0%
!!! TTTTTTTTTTGAGAGGATAC+AGG + chr8_4:7382328-7382347 None:intergenic 25.0%
! ACAAGACATAAACCTTTATT+AGG - chr8_4:7382421-7382440 Msa1310770:intron 25.0%
! ACATTCCAAAAACCTAATAA+AGG + chr8_4:7382436-7382455 None:intergenic 25.0%
! AACTGCTATTATAACTGTAT+AGG + chr8_4:7382585-7382604 None:intergenic 25.0%
! ACAATTCAGTCTCAAAATAT+AGG - chr8_4:7382137-7382156 Msa1310770:intron 25.0%
! AGAGAGTTTGAATATAAAGT+TGG + chr8_4:7382850-7382869 None:intergenic 25.0%
! AAGTACAAGATATAAACCTT+TGG - chr8_4:7382984-7383003 Msa1310770:intron 25.0%
! AGTACAAGATATAAACCTTT+GGG - chr8_4:7382985-7383004 Msa1310770:intron 25.0%
! GAACTAAAAAATTGTATTGG+AGG - chr8_4:7383151-7383170 Msa1310770:intron 25.0%
! TAAAAAATTGTATTGGAGGA+GGG - chr8_4:7383155-7383174 Msa1310770:intron 25.0%
! AGACAAATTTCTAATTCGTA+GGG + chr8_4:7383465-7383484 None:intergenic 25.0%
! TAGACAAATTTCTAATTCGT+AGG + chr8_4:7383466-7383485 None:intergenic 25.0%
!!! AATAGCAGTTGGTTTTAATA+TGG - chr8_4:7383562-7383581 Msa1310770:intron 25.0%
! ACAATTCAGTCTCAAAATAT+AGG - chr8_4:7382137-7382156 Msa1310770:intron 25.0%
! TGAGAGTTGGAATATAAAAT+TGG + chr8_4:7383805-7383824 None:intergenic 25.0%
! ATTTATGGTAAATTGAGAGT+TGG + chr8_4:7383818-7383837 None:intergenic 25.0%
! ATAAAGCAATTATGAAGAAG+TGG + chr8_4:7383938-7383957 None:intergenic 25.0%
! CTGATCACGAAAAAATTATT+TGG + chr8_4:7384011-7384030 None:intergenic 25.0%
! TCTGTAGAAAATTCAAAGTT+TGG + chr8_4:7384260-7384279 None:intergenic 25.0%
!! GCACTGATAAATAAAATGAT+CGG - chr8_4:7384569-7384588 Msa1310770:intron 25.0%
! TAAATAAAATGATCGGTGAA+TGG - chr8_4:7384576-7384595 Msa1310770:intron 25.0%
!! AATGGTCTTGAAAATTTGTA+TGG - chr8_4:7384594-7384613 Msa1310770:intron 25.0%
! CCACCAAAAAATAAAATTTG+AGG + chr8_4:7384633-7384652 None:intergenic 25.0%
!!! CCTCAAATTTTATTTTTTGG+TGG - chr8_4:7384630-7384649 Msa1310770:intron 25.0%
! ATCGATTTATGAGTTTCTTC+GGG + chr8_4:7379022-7379041 None:intergenic 30.0%
!!! ACCCTAATTTTTGAAATGCT+TGG + chr8_4:7379058-7379077 None:intergenic 30.0%
!! TTTCTCCATTTTTGCAGAAA+TGG - chr8_4:7379146-7379165 Msa1310770:three_prime_UTR 30.0%
CATAGATGATGATATTGCTT+TGG - chr8_4:7379263-7379282 Msa1310770:intron 30.0%
TAGAAATGATGGTAGAAACT+CGG - chr8_4:7379369-7379388 Msa1310770:intron 30.0%
CGATCTAGAGATTAATGATT+TGG - chr8_4:7379478-7379497 Msa1310770:CDS 30.0%
AGGTTCTTGTAAATACATAG+AGG - chr8_4:7379719-7379738 Msa1310770:intron 30.0%
!! TACATAGAGGTTTTGTGTAT+AGG - chr8_4:7379732-7379751 Msa1310770:intron 30.0%
TGTAAATGCTGTGAATGATT+TGG + chr8_4:7379976-7379995 None:intergenic 30.0%
AGCTACCAAGAATATGATAA+TGG - chr8_4:7380044-7380063 Msa1310770:intron 30.0%
GCTACCAAGAATATGATAAT+GGG - chr8_4:7380045-7380064 Msa1310770:intron 30.0%
! CTACCAAGAATATGATAATG+GGG - chr8_4:7380046-7380065 Msa1310770:intron 30.0%
!! TACCAAGAATATGATAATGG+GGG - chr8_4:7380047-7380066 Msa1310770:intron 30.0%
CTAAACTAACTGAAATGTCT+AGG + chr8_4:7380110-7380129 None:intergenic 30.0%
ACATCTAATTAATTGAGTCG+AGG - chr8_4:7380274-7380293 Msa1310770:intron 30.0%
CATCTAATTAATTGAGTCGA+GGG - chr8_4:7380275-7380294 Msa1310770:intron 30.0%
ACATAATAAATTGCAAGCAC+GGG + chr8_4:7380379-7380398 None:intergenic 30.0%
TTTATATATTCAAACCGCAG+AGG - chr8_4:7380428-7380447 Msa1310770:intron 30.0%
TGGAGTACAGGTATTTATTT+AGG - chr8_4:7380492-7380511 Msa1310770:intron 30.0%
ATAACGTGATTAAATCACTG+TGG - chr8_4:7380551-7380570 Msa1310770:intron 30.0%
TAGAACAAGACATAAAGCTT+TGG - chr8_4:7381028-7381047 Msa1310770:intron 30.0%
TCAAACTCTCTAATTCTTAG+AGG - chr8_4:7381161-7381180 Msa1310770:intron 30.0%
TTCCTATACAGTTGTAATCA+TGG - chr8_4:7381203-7381222 Msa1310770:intron 30.0%
! GATTTTATGCATAATCGGTA+AGG - chr8_4:7381239-7381258 Msa1310770:intron 30.0%
! TTTTATGCATAATCGGTAAG+GGG - chr8_4:7381241-7381260 Msa1310770:intron 30.0%
!!! ACGGTAAGGTAAGAATTTTT+TGG - chr8_4:7381538-7381557 Msa1310770:intron 30.0%
!!! GGTAAGAATTTTTTGGAAAG+AGG - chr8_4:7381545-7381564 Msa1310770:intron 30.0%
!!! AGGAAATTGGATTTTTTGAG+TGG + chr8_4:7381608-7381627 None:intergenic 30.0%
! TTTCAATGATTCAGGTTATC+AGG + chr8_4:7382187-7382206 None:intergenic 30.0%
ATACAAAACAATGAAGCAAC+AGG + chr8_4:7382888-7382907 None:intergenic 30.0%
! TAACAGATGTAGCTTTTAGT+TGG - chr8_4:7382929-7382948 Msa1310770:intron 30.0%
TAATGTAGAAACAAATACGC+AGG - chr8_4:7382953-7382972 Msa1310770:intron 30.0%
TGGAAGAAATAGAGGAAAAT+GGG - chr8_4:7383069-7383088 Msa1310770:CDS 30.0%
GGGGAACTAAAAAATTGTAT+TGG - chr8_4:7383148-7383167 Msa1310770:intron 30.0%
CTAAAAAATTGTATTGGAGG+AGG - chr8_4:7383154-7383173 Msa1310770:intron 30.0%
ATCTGTGACATATCTTTAGT+TGG - chr8_4:7383411-7383430 Msa1310770:intron 30.0%
TATACGACTATAATAGCAGT+TGG - chr8_4:7383551-7383570 Msa1310770:intron 30.0%
TAGGGATAAACAAAGCTATT+AGG - chr8_4:7383683-7383702 Msa1310770:intron 30.0%
GAAGAAGTGGAAATAAAACA+TGG + chr8_4:7383925-7383944 None:intergenic 30.0%
! TCTAATTTGTCAAATCTTGC+AGG - chr8_4:7384156-7384175 Msa1310770:intron 30.0%
AACGATATTATCAGCGATAA+AGG + chr8_4:7384522-7384541 None:intergenic 30.0%
TTTATCGCTGATAATATCGT+TGG - chr8_4:7384521-7384540 Msa1310770:CDS 30.0%
ACATGCCATAAATACAACAA+TGG + chr8_4:7384657-7384676 None:intergenic 30.0%
TTACGTGGCAAAAAATTGAC+CGG + chr8_4:7378884-7378903 None:intergenic 35.0%
TCGATTTATGAGTTTCTTCG+GGG + chr8_4:7379021-7379040 None:intergenic 35.0%
ATAAGAGGAATCTTACAAGC+TGG + chr8_4:7379215-7379234 None:intergenic 35.0%
TCTACCATCATTTCTACGAT+AGG + chr8_4:7379365-7379384 None:intergenic 35.0%
! TAACATTCCATAGTGGGATA+AGG - chr8_4:7379522-7379541 Msa1310770:intron 35.0%
! ATCGCATGCCATAATTTTGA+GGG + chr8_4:7379839-7379858 None:intergenic 35.0%
! AATCGCATGCCATAATTTTG+AGG + chr8_4:7379840-7379859 None:intergenic 35.0%
!! AAGAATATGATAATGGGGGT+GGG - chr8_4:7380051-7380070 Msa1310770:intron 35.0%
GTTTAGCTGTAGAAAATGTC+AGG - chr8_4:7380124-7380143 Msa1310770:intron 35.0%
ACTGTCAATTGACATATCAC+CGG - chr8_4:7380337-7380356 Msa1310770:intron 35.0%
GGGAAAAGTAAATGAAGATC+CGG + chr8_4:7380359-7380378 None:intergenic 35.0%
ACTTGCGAAGGAAATTTCAA+AGG - chr8_4:7380467-7380486 Msa1310770:intron 35.0%
CGAAGGAAATTTCAAAGGAT+TGG - chr8_4:7380472-7380491 Msa1310770:intron 35.0%
ATTTCAAAGGATTGGAGTAC+AGG - chr8_4:7380480-7380499 Msa1310770:intron 35.0%
TTAAATCACTGTGGATGCTT+TGG - chr8_4:7380560-7380579 Msa1310770:intron 35.0%
TTGATGCTACGTTCAAAAAC+TGG + chr8_4:7380589-7380608 None:intergenic 35.0%
! TGTCTTTTATAACTGTTGGC+TGG - chr8_4:7380687-7380706 Msa1310770:intron 35.0%
GTACAAAACATTGAAGCAAC+AGG + chr8_4:7380959-7380978 None:intergenic 35.0%
ATGCTACGAATCAAATATGC+AGG - chr8_4:7380996-7381015 Msa1310770:intron 35.0%
! ACAAGACATAAAGCTTTGGT+AGG - chr8_4:7381032-7381051 Msa1310770:intron 35.0%
GAGAGTTTGACAACCTTATT+TGG + chr8_4:7381151-7381170 None:intergenic 35.0%
TGCCATGATTACAACTGTAT+AGG + chr8_4:7381208-7381227 None:intergenic 35.0%
AGGAATGCCAGAAGAAAATA+TGG - chr8_4:7381388-7381407 Msa1310770:intron 35.0%
AAAATATGGAAGCAGGAGAA+AGG - chr8_4:7381402-7381421 Msa1310770:intron 35.0%
GAAAGGATCTCAGGAAATTA+TGG - chr8_4:7381419-7381438 Msa1310770:intron 35.0%
TCTCAGGAAATTATGGAAGT+AGG - chr8_4:7381426-7381445 Msa1310770:intron 35.0%
CTCAGGAAATTATGGAAGTA+GGG - chr8_4:7381427-7381446 Msa1310770:intron 35.0%
AAAACGAGTTTCAGGGAATT+GGG + chr8_4:7381700-7381719 None:intergenic 35.0%
GGATTAGAAAACGAGTTTCA+GGG + chr8_4:7381707-7381726 None:intergenic 35.0%
! TGGATTAGAAAACGAGTTTC+AGG + chr8_4:7381708-7381727 None:intergenic 35.0%
! TATGTTCATCCAATCGATTC+TGG + chr8_4:7381816-7381835 None:intergenic 35.0%
ACAAACTGCTATGATAACCA+TGG + chr8_4:7381978-7381997 None:intergenic 35.0%
AGCAGATCTAGTTAAGAGTA+TGG - chr8_4:7382080-7382099 Msa1310770:intron 35.0%
GGTTATCAGGACAAATACAT+AGG + chr8_4:7382174-7382193 None:intergenic 35.0%
ATTCTACATTACCCAACTAC+AGG + chr8_4:7382376-7382395 None:intergenic 35.0%
AGACGGATGTCTAATTCTTA+GGG + chr8_4:7382493-7382512 None:intergenic 35.0%
TAGACGGATGTCTAATTCTT+AGG + chr8_4:7382494-7382513 None:intergenic 35.0%
GAGAGTTTGACAACCTTATT+TGG + chr8_4:7381151-7381170 None:intergenic 35.0%
TCACTCTTAGAGGTTGTAAT+TGG - chr8_4:7382548-7382567 Msa1310770:intron 35.0%
AGCAGATCTAGTAAAGAGTA+AGG - chr8_4:7382691-7382710 Msa1310770:intron 35.0%
GCAGATCTAGTAAAGAGTAA+GGG - chr8_4:7382692-7382711 Msa1310770:intron 35.0%
GTGGAAGAAATAGAGGAAAA+TGG - chr8_4:7383068-7383087 Msa1310770:CDS 35.0%
AAGAAATAGAGGAAAATGGG+AGG - chr8_4:7383072-7383091 Msa1310770:CDS 35.0%
AGAAATAGAGGAAAATGGGA+GGG - chr8_4:7383073-7383092 Msa1310770:CDS 35.0%
ATGAGGAGGGTTTAGTATTA+TGG + chr8_4:7383125-7383144 None:intergenic 35.0%
AATACTAAACCCTCCTCATT+TGG - chr8_4:7383126-7383145 Msa1310770:intron 35.0%
ATACTAAACCCTCCTCATTT+GGG - chr8_4:7383127-7383146 Msa1310770:intron 35.0%
!!! TTTTTTAGTTCCCCCAAATG+AGG + chr8_4:7383142-7383161 None:intergenic 35.0%
GTGGAAAATATGAGGGAAAA+TGG + chr8_4:7383328-7383347 None:intergenic 35.0%
ACAGATTCATAAACCTACCA+AGG + chr8_4:7383397-7383416 None:intergenic 35.0%
TATACCAAATACAACCTCCA+AGG + chr8_4:7383525-7383544 None:intergenic 35.0%
AAGCAGATCTTGTAAACAGT+AGG - chr8_4:7383664-7383683 Msa1310770:intron 35.0%
AGCAGATCTTGTAAACAGTA+GGG - chr8_4:7383665-7383684 Msa1310770:intron 35.0%
! TCAATTGTTATTGCTTGAGC+AGG + chr8_4:7384040-7384059 None:intergenic 35.0%
TGCTCAAGCAATAACAATTG+AGG - chr8_4:7384039-7384058 Msa1310770:intron 35.0%
GACAAATTAGAGCACAATTG+AGG + chr8_4:7384147-7384166 None:intergenic 35.0%
AAATCCACAATAGATGCACT+TGG + chr8_4:7384198-7384217 None:intergenic 35.0%
! CTATTGTGGATTTTGTCAAG+AGG - chr8_4:7384205-7384224 Msa1310770:intron 35.0%
! ATTTTCTACAGAGACTCATG+AGG - chr8_4:7384268-7384287 Msa1310770:intron 35.0%
TCGTACAAAAGCTCCTTTAA+CGG + chr8_4:7384430-7384449 None:intergenic 35.0%
AAAGAGAAGCTGCTTGAAAA+TGG - chr8_4:7384451-7384470 Msa1310770:intron 35.0%
TGCTTGAAAATGGTGATAGA+TGG - chr8_4:7384461-7384480 Msa1310770:intron 35.0%
GCTTGAAAATGGTGATAGAT+GGG - chr8_4:7384462-7384481 Msa1310770:intron 35.0%
! AAACTTGTAGCCTTGAACTT+TGG - chr8_4:7384775-7384794 Msa1310770:five_prime_UTR 35.0%
! TAGCCTTGAACTTTGGATAA+TGG - chr8_4:7384782-7384801 Msa1310770:five_prime_UTR 35.0%
GTTCCATTATCCAAAGTTCA+AGG + chr8_4:7384788-7384807 None:intergenic 35.0%
TACGTGGCAAAAAATTGACC+GGG + chr8_4:7378883-7378902 None:intergenic 40.0%
! TCTGAGATGAAGAGAAGAGA+GGG + chr8_4:7378930-7378949 None:intergenic 40.0%
AGATTTCCGAGCTAAGAATG+CGG + chr8_4:7379172-7379191 None:intergenic 40.0%
CGCAAAACTCGTGACATAAT+AGG - chr8_4:7379292-7379311 Msa1310770:intron 40.0%
AGCACCTATCGTAGAAATGA+TGG - chr8_4:7379358-7379377 Msa1310770:intron 40.0%
! CTCGGTTGTTGTTGTTGTAA+TGG - chr8_4:7379545-7379564 Msa1310770:intron 40.0%
TGTTATGCTTGTTTAGGCTG+TGG - chr8_4:7379794-7379813 Msa1310770:intron 40.0%
CTGCACAACCCTCAAAATTA+TGG - chr8_4:7379828-7379847 Msa1310770:intron 40.0%
CACCTCTACTCTACCAAATT+AGG - chr8_4:7379867-7379886 Msa1310770:intron 40.0%
GACCTAATTTGGTAGAGTAG+AGG + chr8_4:7379872-7379891 None:intergenic 40.0%
GAGAAACGACAGACCTAATT+TGG + chr8_4:7379883-7379902 None:intergenic 40.0%
CACCCCCATTATCATATTCT+TGG + chr8_4:7380052-7380071 None:intergenic 40.0%
!! CAAGAATATGATAATGGGGG+TGG - chr8_4:7380050-7380069 Msa1310770:intron 40.0%
! AAAATGTCAGGAAAGTGCAC+AGG - chr8_4:7380136-7380155 Msa1310770:intron 40.0%
TTTCCCCATTACCATGTGAA+TGG - chr8_4:7380187-7380206 Msa1310770:intron 40.0%
! TGACCATTCACATGGTAATG+GGG + chr8_4:7380193-7380212 None:intergenic 40.0%
CTGACCATTCACATGGTAAT+GGG + chr8_4:7380194-7380213 None:intergenic 40.0%
GCAACTTATACTTACGTGCA+TGG - chr8_4:7380721-7380740 Msa1310770:intron 40.0%
TGCTTGCAAACTTTGTGAAG+CGG - chr8_4:7380850-7380869 Msa1310770:intron 40.0%
! CCTGCTTCCATATTTTCTTC+TGG + chr8_4:7381398-7381417 None:intergenic 40.0%
CCAGAAGAAAATATGGAAGC+AGG - chr8_4:7381395-7381414 Msa1310770:intron 40.0%
GAAAGAGAAACGATCAAGAG+AGG - chr8_4:7381449-7381468 Msa1310770:intron 40.0%
CTGTCTCTTCCACTCTTATA+GGG - chr8_4:7381489-7381508 Msa1310770:intron 40.0%
CTTCCACTCTTATAGGGAAA+TGG - chr8_4:7381495-7381514 Msa1310770:intron 40.0%
CAACCATTTCCCTATAAGAG+TGG + chr8_4:7381501-7381520 None:intergenic 40.0%
TCTTATAGGGAAATGGTTGC+AGG - chr8_4:7381502-7381521 Msa1310770:intron 40.0%
CTTATAGGGAAATGGTTGCA+GGG - chr8_4:7381503-7381522 Msa1310770:intron 40.0%
TGCAGTGCACATTAACTATG+CGG + chr8_4:7381580-7381599 None:intergenic 40.0%
GAAAACGAGTTTCAGGGAAT+TGG + chr8_4:7381701-7381720 None:intergenic 40.0%
! TCTAATCCACTCCTCTGAAA+CGG - chr8_4:7381719-7381738 Msa1310770:intron 40.0%
!! TGGGGATTGGTTTCAATTGT+GGG + chr8_4:7381756-7381775 None:intergenic 40.0%
!! TTGGGGATTGGTTTCAATTG+TGG + chr8_4:7381757-7381776 None:intergenic 40.0%
GGTCTACTCATAGTTGTTGA+GGG - chr8_4:7381897-7381916 Msa1310770:intron 40.0%
GTCTACTCATAGTTGTTGAG+GGG - chr8_4:7381898-7381917 Msa1310770:intron 40.0%
ATACACGATTCTGACTACCA+TGG - chr8_4:7381958-7381977 Msa1310770:intron 40.0%
CAACAAAACAATGACGCAAC+AGG + chr8_4:7382269-7382288 None:intergenic 40.0%
AACAAACCTTAGCCTGTAGT+TGG - chr8_4:7382361-7382380 Msa1310770:intron 40.0%
ACAAACCTTAGCCTGTAGTT+GGG - chr8_4:7382362-7382381 Msa1310770:intron 40.0%
TCAAACTCTCTCACTCTTAG+AGG - chr8_4:7382538-7382557 Msa1310770:intron 40.0%
ATCTGCTTGTTTGTCCTATG+TGG + chr8_4:7382678-7382697 None:intergenic 40.0%
CAGTCTCAAAATATAGGCTG+TGG - chr8_4:7382143-7382162 Msa1310770:intron 40.0%
ATGAAGCAACAGGAAAATGC+TGG + chr8_4:7382878-7382897 None:intergenic 40.0%
GGAAAAAAGGAATGAGCAAG+TGG - chr8_4:7383049-7383068 Msa1310770:CDS 40.0%
TGAGCAAGTGGAAGAAATAG+AGG - chr8_4:7383061-7383080 Msa1310770:CDS 40.0%
GAAATAGAGGAAAATGGGAG+GGG - chr8_4:7383074-7383093 Msa1310770:CDS 40.0%
TACTAAACCCTCCTCATTTG+GGG - chr8_4:7383128-7383147 Msa1310770:intron 40.0%
TTGAGGGGTGGAAAATATGA+GGG + chr8_4:7383335-7383354 None:intergenic 40.0%
TTTGAGGGGTGGAAAATATG+AGG + chr8_4:7383336-7383355 None:intergenic 40.0%
TCTTTAGTTGGACCAGACAT+AGG - chr8_4:7383423-7383442 Msa1310770:intron 40.0%
!! AGAGTCTGACAGCCTTATTT+GGG + chr8_4:7383499-7383518 None:intergenic 40.0%
TCATCCTTGGAGGTTGTATT+TGG - chr8_4:7383518-7383537 Msa1310770:intron 40.0%
ATCTGCTTGTTTGTCCTATG+TGG + chr8_4:7382678-7382697 None:intergenic 40.0%
CAGCAGATGATTCTACTGAA+AGG + chr8_4:7383971-7383990 None:intergenic 40.0%
AGCAATAACAATTGAGGCTG+AGG - chr8_4:7384045-7384064 Msa1310770:intron 40.0%
ATGACCAAGTGCATCTATTG+TGG - chr8_4:7384191-7384210 Msa1310770:intron 40.0%
CTTCAACAATGGCATCAACT+GGG + chr8_4:7384235-7384254 None:intergenic 40.0%
! CAGTTGATGCCATTGTTGAA+GGG - chr8_4:7384234-7384253 Msa1310770:intron 40.0%
AAAGTTTGGCCCTTCAACAA+TGG + chr8_4:7384246-7384265 None:intergenic 40.0%
GATAAAGGCTTTCAGATCTC+AGG + chr8_4:7384507-7384526 None:intergenic 40.0%
TCGTTGGATCTCTGCTTATT+CGG - chr8_4:7384537-7384556 Msa1310770:intron 40.0%
GTGGGCCATTGTTGTATTTA+TGG - chr8_4:7384649-7384668 Msa1310770:intron 40.0%
CTGAGATGAAGAGAAGAGAG+GGG + chr8_4:7378929-7378948 None:intergenic 45.0%
!! CTCTGAGATGAAGAGAAGAG+AGG + chr8_4:7378931-7378950 None:intergenic 45.0%
TCCTCAGATCAACCTTCTTC+AGG - chr8_4:7378980-7378999 Msa1310770:three_prime_UTR 45.0%
! ACCTGAAGAAGGTTGATCTG+AGG + chr8_4:7378984-7379003 None:intergenic 45.0%
GAGAGAGAGATACCTGAAGA+AGG + chr8_4:7378995-7379014 None:intergenic 45.0%
TGCGGCCATTTCTGCAAAAA+TGG + chr8_4:7379154-7379173 None:intergenic 45.0%
AAATGGCCGCATTCTTAGCT+CGG - chr8_4:7379163-7379182 Msa1310770:exon 45.0%
AGAGGAATCTTACAAGCTGG+CGG + chr8_4:7379212-7379231 None:intergenic 45.0%
TGATGGTAGAAACTCGGCTT+AGG - chr8_4:7379375-7379394 Msa1310770:intron 45.0%
AAACTCGGCTTAGGTGGTTT+GGG - chr8_4:7379384-7379403 Msa1310770:intron 45.0%
! ACCGGTGGATTCTGTAGTAA+GGG - chr8_4:7379421-7379440 Msa1310770:CDS 45.0%
! TTCCATAGTGGGATAAGGCT+CGG - chr8_4:7379527-7379546 Msa1310770:intron 45.0%
!! TATGATAATGGGGGTGGGTT+TGG - chr8_4:7380056-7380075 Msa1310770:intron 45.0%
AAAGTGAGTGGAGCACATTG+TGG + chr8_4:7380170-7380189 None:intergenic 45.0%
!! ATGGTAATGGGGAAAGTGAG+TGG + chr8_4:7380182-7380201 None:intergenic 45.0%
GCTGACCATTCACATGGTAA+TGG + chr8_4:7380195-7380214 None:intergenic 45.0%
TTACCATGTGAATGGTCAGC+CGG - chr8_4:7380195-7380214 Msa1310770:intron 45.0%
AGAAAGGGAGAAACTTGCGA+AGG - chr8_4:7380455-7380474 Msa1310770:intron 45.0%
CATTAGACCTCGAACAAGCT+CGG + chr8_4:7380626-7380645 None:intergenic 45.0%
CTCAATGGGCCTTTCTCAAA+TGG + chr8_4:7380770-7380789 None:intergenic 45.0%
GCACTCAGAAGATATCCAAC+AGG - chr8_4:7380812-7380831 Msa1310770:intron 45.0%
CAGAAGATATCCAACAGGAG+AGG - chr8_4:7380817-7380836 Msa1310770:intron 45.0%
AGAGCACAGATGCTACCAAA+TGG - chr8_4:7380922-7380941 Msa1310770:intron 45.0%
! CAGGAAAATGCTGTGCCATT+TGG + chr8_4:7380940-7380959 None:intergenic 45.0%
! AACGATCAAGAGAGGTGTAG+TGG - chr8_4:7381457-7381476 Msa1310770:intron 45.0%
CCTATAAGAGTGGAAGAGAC+AGG + chr8_4:7381491-7381510 None:intergenic 45.0%
CCTGTCTCTTCCACTCTTAT+AGG - chr8_4:7381488-7381507 Msa1310770:intron 45.0%
TAGTTAATGTGCACTGCACG+TGG - chr8_4:7381582-7381601 Msa1310770:intron 45.0%
GATGACCTGTTTCACGTTGT+GGG + chr8_4:7381671-7381690 None:intergenic 45.0%
AGATGACCTGTTTCACGTTG+TGG + chr8_4:7381672-7381691 None:intergenic 45.0%
!! CTAATCCACTCCTCTGAAAC+GGG - chr8_4:7381720-7381739 Msa1310770:intron 45.0%
TCAAAGAAGACCCGTTTCAG+AGG + chr8_4:7381733-7381752 None:intergenic 45.0%
AAACCAATCCCCAACCTTAG+AGG - chr8_4:7381763-7381782 Msa1310770:intron 45.0%
AACCAATCCCCAACCTTAGA+GGG - chr8_4:7381764-7381783 Msa1310770:intron 45.0%
GGGTCTACTCATAGTTGTTG+AGG - chr8_4:7381896-7381915 Msa1310770:intron 45.0%
CTAGAGGGATAACATTGCAG+CGG + chr8_4:7382039-7382058 None:intergenic 45.0%
TCCTACGTTGCTACACTAGA+GGG + chr8_4:7382054-7382073 None:intergenic 45.0%
TGCTATTAGGTGTGTCTCTC+TGG - chr8_4:7382111-7382130 Msa1310770:intron 45.0%
CATTACCCAACTACAGGCTA+AGG + chr8_4:7382370-7382389 None:intergenic 45.0%
AACTCGCAAACAAAGCCCAA+AGG + chr8_4:7383003-7383022 None:intergenic 45.0%
!! TTGGGCTTTGTTTGCGAGTT+TGG - chr8_4:7383003-7383022 Msa1310770:intron 45.0%
ACTAAACCCTCCTCATTTGG+GGG - chr8_4:7383129-7383148 Msa1310770:intron 45.0%
TTAGTTCCCCCAAATGAGGA+GGG + chr8_4:7383138-7383157 None:intergenic 45.0%
! TTTAGTTCCCCCAAATGAGG+AGG + chr8_4:7383139-7383158 None:intergenic 45.0%
! TGTATTGGAGGAGGGTTTTG+AGG - chr8_4:7383163-7383182 Msa1310770:intron 45.0%
!! GTATTGGAGGAGGGTTTTGA+GGG - chr8_4:7383164-7383183 Msa1310770:intron 45.0%
!!! TATTGGAGGAGGGTTTTGAG+GGG - chr8_4:7383165-7383184 Msa1310770:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+CGG + chr8_4:7383008-7383027 None:intergenic 45.0%
!! CAAGGCTTTGTTTGCGAGTT+TGG + chr8_4:7383379-7383398 None:intergenic 45.0%
CAAACTCGCAAACAAAGCCT+TGG - chr8_4:7383377-7383396 Msa1310770:intron 45.0%
CTCGCAAAGTTTCCTATGTC+TGG + chr8_4:7383438-7383457 None:intergenic 45.0%
!! GAGAGTCTGACAGCCTTATT+TGG + chr8_4:7383500-7383519 None:intergenic 45.0%
ACGGATGGATAATGTTGCAG+TGG + chr8_4:7383617-7383636 None:intergenic 45.0%
! TATGTGGCTACTGGCTACAA+CGG + chr8_4:7383636-7383655 None:intergenic 45.0%
TGTTTGTCCTATGTGGCTAC+TGG + chr8_4:7382671-7382690 None:intergenic 45.0%
TTACTGACCGAGTTGTCCTA+CGG + chr8_4:7384087-7384106 None:intergenic 45.0%
GAAGGGAAGACACAAAAGGT+AGG + chr8_4:7384110-7384129 None:intergenic 45.0%
AGGAGAAGGGAAGACACAAA+AGG + chr8_4:7384114-7384133 None:intergenic 45.0%
ACAATTGAGGAATGCAGGGA+AGG + chr8_4:7384134-7384153 None:intergenic 45.0%
GAGCACAATTGAGGAATGCA+GGG + chr8_4:7384138-7384157 None:intergenic 45.0%
AGAGCACAATTGAGGAATGC+AGG + chr8_4:7384139-7384158 None:intergenic 45.0%
CCTTCAACAATGGCATCAAC+TGG + chr8_4:7384236-7384255 None:intergenic 45.0%
! CCAGTTGATGCCATTGTTGA+AGG - chr8_4:7384233-7384252 Msa1310770:intron 45.0%
CAAGCGCACAATGTGTTACG+TGG + chr8_4:7378899-7378918 None:intergenic 50.0%
TCGTTTCGTGTTCCTCTCTG+TGG - chr8_4:7378953-7378972 Msa1310770:three_prime_UTR 50.0%
TCTGAGGAGAATCCACAGAG+AGG + chr8_4:7378968-7378987 None:intergenic 50.0%
GAGGAATCTTACAAGCTGGC+GGG + chr8_4:7379211-7379230 None:intergenic 50.0%
AGAGAGAGACAGAGAGAGTC+AGG - chr8_4:7379333-7379352 Msa1310770:intron 50.0%
GAGAGAGACAGAGAGAGTCA+GGG - chr8_4:7379334-7379353 Msa1310770:intron 50.0%
TGGTAGAAACTCGGCTTAGG+TGG - chr8_4:7379378-7379397 Msa1310770:intron 50.0%
GAAACTCGGCTTAGGTGGTT+TGG - chr8_4:7379383-7379402 Msa1310770:intron 50.0%
TGGGCATGTAGAGAGAAGAC+CGG - chr8_4:7379403-7379422 Msa1310770:intron 50.0%
! GACCGGTGGATTCTGTAGTA+AGG - chr8_4:7379420-7379439 Msa1310770:CDS 50.0%
CCCCTTACTACAGAATCCAC+CGG + chr8_4:7379425-7379444 None:intergenic 50.0%
! CCGGTGGATTCTGTAGTAAG+GGG - chr8_4:7379422-7379441 Msa1310770:CDS 50.0%
GTGGATTCTGTAGTAAGGGG+AGG - chr8_4:7379425-7379444 Msa1310770:CDS 50.0%
! AACCGAGCCTTATCCCACTA+TGG + chr8_4:7379532-7379551 None:intergenic 50.0%
ATGCTTGTTTAGGCTGTGGC+AGG - chr8_4:7379798-7379817 Msa1310770:intron 50.0%
TTTAGGCTGTGGCAGGTCAA+GGG - chr8_4:7379805-7379824 Msa1310770:intron 50.0%
AAGCGGGATACACACAAGTC+CGG + chr8_4:7380217-7380236 None:intergenic 50.0%
!! GATGGGATTTTGAGGAGCTG+TGG + chr8_4:7380246-7380265 None:intergenic 50.0%
AAACCGCAGAGGACGAAGAA+AGG - chr8_4:7380439-7380458 Msa1310770:intron 50.0%
AACCGCAGAGGACGAAGAAA+GGG - chr8_4:7380440-7380459 Msa1310770:intron 50.0%
! TTTCTCACCGAGCTTGTTCG+AGG - chr8_4:7380616-7380635 Msa1310770:intron 50.0%
CACGGAAACGAGGACTCAAT+GGG + chr8_4:7380784-7380803 None:intergenic 50.0%
CATTGAGTCCTCGTTTCCGT+GGG - chr8_4:7380783-7380802 Msa1310770:intron 50.0%
ATTGAGTCCTCGTTTCCGTG+GGG - chr8_4:7380784-7380803 Msa1310770:intron 50.0%
TTCTGAGTGCATGTTCCCCA+CGG + chr8_4:7380802-7380821 None:intergenic 50.0%
ATGCAACGTTCCTCTCCTGT+TGG + chr8_4:7380830-7380849 None:intergenic 50.0%
GAAGCAGGAGAAAGGATCTC+AGG - chr8_4:7381410-7381429 Msa1310770:intron 50.0%
TAGGGAAATGGTTGCAGGGT+AGG - chr8_4:7381507-7381526 Msa1310770:intron 50.0%
AGGGAAATGGTTGCAGGGTA+GGG - chr8_4:7381508-7381527 Msa1310770:intron 50.0%
TGCAGGGTAGGGGAAAGTAA+CGG - chr8_4:7381519-7381538 Msa1310770:intron 50.0%
GGTAGGGGAAAGTAACGGTA+AGG - chr8_4:7381524-7381543 Msa1310770:intron 50.0%
TCTGACCCACAACGTGAAAC+AGG - chr8_4:7381663-7381682 Msa1310770:intron 50.0%
CAACAATGGAACTCGCCACA+GGG + chr8_4:7381790-7381809 None:intergenic 50.0%
TGTGGCGAGTTCCATTGTTG+CGG - chr8_4:7381790-7381809 Msa1310770:intron 50.0%
! ATCGATTCTGGCCGCAACAA+TGG + chr8_4:7381804-7381823 None:intergenic 50.0%
TTGTTGCGGCCAGAATCGAT+TGG - chr8_4:7381804-7381823 Msa1310770:intron 50.0%
TCCCTCTAGTGTAGCAACGT+AGG - chr8_4:7382050-7382069 Msa1310770:intron 50.0%
GTCCTACGTTGCTACACTAG+AGG + chr8_4:7382055-7382074 None:intergenic 50.0%
GCACTGCAACATTATCCCTC+TGG - chr8_4:7382647-7382666 Msa1310770:intron 50.0%
TCCTATGTGGCTACACCAGA+GGG + chr8_4:7382665-7382684 None:intergenic 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG - chr8_4:7383006-7383025 Msa1310770:intron 50.0%
AGGGGAAGGCTTGGGAAAAA+AGG - chr8_4:7383036-7383055 Msa1310770:CDS 50.0%
ATAGAGGAAAATGGGAGGGG+AGG - chr8_4:7383077-7383096 Msa1310770:CDS 50.0%
TAGAGGAAAATGGGAGGGGA+GGG - chr8_4:7383078-7383097 Msa1310770:CDS 50.0%
!!! AGGAGGGTTTTGAGGGGTTT+TGG - chr8_4:7383171-7383190 Msa1310770:intron 50.0%
!!! AGGGTTTTGAGGGGTTTTGG+AGG - chr8_4:7383174-7383193 Msa1310770:intron 50.0%
!!! GGGTTTTGAGGGGTTTTGGA+GGG - chr8_4:7383175-7383194 Msa1310770:intron 50.0%
AGGGGAAGGGAAGACTTTGA+GGG + chr8_4:7383351-7383370 None:intergenic 50.0%
CTCGCAAACAAAGCCTTGGT+AGG - chr8_4:7383381-7383400 Msa1310770:intron 50.0%
TGTCAGACTCTCATCCTTGG+AGG - chr8_4:7383508-7383527 Msa1310770:intron 50.0%
GTTGTAGCCAGTAGCCACAT+AGG - chr8_4:7383635-7383654 Msa1310770:intron 50.0%
AGCTATTAGGCGTGTGTCAC+TGG - chr8_4:7383696-7383715 Msa1310770:intron 50.0%
AGGAATGCAGGGAAGGAGAA+GGG + chr8_4:7384127-7384146 None:intergenic 50.0%
GCATGTAGAGAGAAGACCGG+TGG - chr8_4:7379406-7379425 Msa1310770:intron 55.0%
GTTTAGGCTGTGGCAGGTCA+AGG - chr8_4:7379804-7379823 Msa1310770:intron 55.0%
AGTCCGGCTGACCATTCACA+TGG + chr8_4:7380201-7380220 None:intergenic 55.0%
GGACTTGTGTGTATCCCGCT+TGG - chr8_4:7380216-7380235 Msa1310770:intron 55.0%
AGGAGCTGTGGTGAACCAAG+CGG + chr8_4:7380234-7380253 None:intergenic 55.0%
CTCCCTTTCTTCGTCCTCTG+CGG + chr8_4:7380445-7380464 None:intergenic 55.0%
CCACGGAAACGAGGACTCAA+TGG + chr8_4:7380785-7380804 None:intergenic 55.0%
CCATTGAGTCCTCGTTTCCG+TGG - chr8_4:7380782-7380801 Msa1310770:intron 55.0%
GGGAAATGGTTGCAGGGTAG+GGG - chr8_4:7381509-7381528 Msa1310770:intron 55.0%
GAAGACCCGTTTCAGAGGAG+TGG + chr8_4:7381728-7381747 None:intergenic 55.0%
GCAACAATGGAACTCGCCAC+AGG + chr8_4:7381791-7381810 None:intergenic 55.0%
TCCCTCTGGTGTAGCCACAT+AGG - chr8_4:7382661-7382680 Msa1310770:intron 55.0%
GTCCTATGTGGCTACACCAG+AGG + chr8_4:7382666-7382685 None:intergenic 55.0%
CGAGTTTGGAGGCGAAGAGA+GGG - chr8_4:7383017-7383036 Msa1310770:intron 55.0%
GAGTTTGGAGGCGAAGAGAG+GGG - chr8_4:7383018-7383037 Msa1310770:intron 55.0%
AAAATGGGAGGGGAGGGCTT+TGG - chr8_4:7383084-7383103 Msa1310770:CDS 55.0%
AAATGGGAGGGGAGGGCTTT+GGG - chr8_4:7383085-7383104 Msa1310770:CDS 55.0%
! GAAGGGAAGACTTTGAGGGG+TGG + chr8_4:7383347-7383366 None:intergenic 55.0%
GGGGAAGGGAAGACTTTGAG+GGG + chr8_4:7383350-7383369 None:intergenic 55.0%
GAGGGGAAGGGAAGACTTTG+AGG + chr8_4:7383352-7383371 None:intergenic 55.0%
! TTTGCGAGTTTGGAGCGGAG+GGG + chr8_4:7383369-7383388 None:intergenic 55.0%
! GTTTGCGAGTTTGGAGCGGA+GGG + chr8_4:7383370-7383389 None:intergenic 55.0%
! TGTTTGCGAGTTTGGAGCGG+AGG + chr8_4:7383371-7383390 None:intergenic 55.0%
GGCTGTCAGACTCTCATCCT+TGG - chr8_4:7383505-7383524 Msa1310770:intron 55.0%
! TGGCTACTGGCTACAACGGA+TGG + chr8_4:7383632-7383651 None:intergenic 55.0%
ATGGCAGCCGTAGGACAACT+CGG - chr8_4:7384077-7384096 Msa1310770:intron 55.0%
GAGGAATGCAGGGAAGGAGA+AGG + chr8_4:7384128-7384147 None:intergenic 55.0%
GGAGCTGTGGTGAACCAAGC+GGG + chr8_4:7380233-7380252 None:intergenic 60.0%
GCATGTTCCCCACGGAAACG+AGG + chr8_4:7380794-7380813 None:intergenic 60.0%
!! GGCCCTCTAAGGTTGGGGAT+TGG + chr8_4:7381769-7381788 None:intergenic 60.0%
!! CACAGGGCCCTCTAAGGTTG+GGG + chr8_4:7381774-7381793 None:intergenic 60.0%
!! CCACAGGGCCCTCTAAGGTT+GGG + chr8_4:7381775-7381794 None:intergenic 60.0%
GCGAGTTTGGAGGCGAAGAG+AGG - chr8_4:7383016-7383035 Msa1310770:intron 60.0%
TTGGAGGCGAAGAGAGGGGA+AGG - chr8_4:7383022-7383041 Msa1310770:intron 60.0%
GCGAAGAGAGGGGAAGGCTT+GGG - chr8_4:7383028-7383047 Msa1310770:CDS 60.0%
AATGGGAGGGGAGGGCTTTG+GGG - chr8_4:7383086-7383105 Msa1310770:CDS 60.0%
! GAGTTTGGAGCGGAGGGGAA+GGG + chr8_4:7383364-7383383 None:intergenic 60.0%
! GAGGCTGAGGAGCGTGAAGA+TGG - chr8_4:7384058-7384077 Msa1310770:intron 60.0%
AGCGTGAAGATGGCAGCCGT+AGG - chr8_4:7384068-7384087 Msa1310770:intron 60.0%
CCCAACCTTAGAGGGCCCTG+TGG - chr8_4:7381772-7381791 Msa1310770:intron 65.0%
!! GCCACAGGGCCCTCTAAGGT+TGG + chr8_4:7381776-7381795 None:intergenic 65.0%
ACTCGCCACAGGGCCCTCTA+AGG + chr8_4:7381780-7381799 None:intergenic 65.0%
GGCGAAGAGAGGGGAAGGCT+TGG - chr8_4:7383027-7383046 Msa1310770:CDS 65.0%
! ATGGGAGGGGAGGGCTTTGG+GGG - chr8_4:7383087-7383106 Msa1310770:CDS 65.0%
! CGAGTTTGGAGCGGAGGGGA+AGG + chr8_4:7383365-7383384 None:intergenic 65.0%
!! TGGGAGGGGAGGGCTTTGGG+GGG - chr8_4:7383088-7383107 Msa1310770:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 7378873 7384832 7378873 ID=Msa1310770;Name=Msa1310770
chr8_4 mRNA 7378873 7384832 7378873 ID=Msa1310770-mRNA-1;Parent=Msa1310770;Name=Msa1310770-mRNA-1;_AED=0.10;_eAED=0.10;_QI=131|0.77|0.9|0.9|0.88|0.8|10|301|234
chr8_4 exon 7378873 7379269 7378873 ID=Msa1310770-mRNA-1:exon:2651;Parent=Msa1310770-mRNA-1
chr8_4 exon 7379416 7379527 7379416 ID=Msa1310770-mRNA-1:exon:2650;Parent=Msa1310770-mRNA-1
chr8_4 exon 7379607 7379674 7379607 ID=Msa1310770-mRNA-1:exon:2649;Parent=Msa1310770-mRNA-1
chr8_4 exon 7382160 7382195 7382160 ID=Msa1310770-mRNA-1:exon:2648;Parent=Msa1310770-mRNA-1
chr8_4 exon 7382834 7382947 7382834 ID=Msa1310770-mRNA-1:exon:2647;Parent=Msa1310770-mRNA-1
chr8_4 exon 7383024 7383115 7383024 ID=Msa1310770-mRNA-1:exon:2646;Parent=Msa1310770-mRNA-1
chr8_4 exon 7383204 7383257 7383204 ID=Msa1310770-mRNA-1:exon:2645;Parent=Msa1310770-mRNA-1
chr8_4 exon 7383817 7383895 7383817 ID=Msa1310770-mRNA-1:exon:2644;Parent=Msa1310770-mRNA-1
chr8_4 exon 7384487 7384542 7384487 ID=Msa1310770-mRNA-1:exon:2643;Parent=Msa1310770-mRNA-1
chr8_4 exon 7384704 7384832 7384704 ID=Msa1310770-mRNA-1:exon:2642;Parent=Msa1310770-mRNA-1
chr8_4 five_prime_UTR 7384704 7384832 7384704 ID=Msa1310770-mRNA-1:five_prime_utr;Parent=Msa1310770-mRNA-1
chr8_4 five_prime_UTR 7384541 7384542 7384541 ID=Msa1310770-mRNA-1:five_prime_utr;Parent=Msa1310770-mRNA-1
chr8_4 CDS 7384487 7384540 7384487 ID=Msa1310770-mRNA-1:cds;Parent=Msa1310770-mRNA-1
chr8_4 CDS 7383817 7383895 7383817 ID=Msa1310770-mRNA-1:cds;Parent=Msa1310770-mRNA-1
chr8_4 CDS 7383204 7383257 7383204 ID=Msa1310770-mRNA-1:cds;Parent=Msa1310770-mRNA-1
chr8_4 CDS 7383024 7383115 7383024 ID=Msa1310770-mRNA-1:cds;Parent=Msa1310770-mRNA-1
chr8_4 CDS 7382834 7382947 7382834 ID=Msa1310770-mRNA-1:cds;Parent=Msa1310770-mRNA-1
chr8_4 CDS 7382160 7382195 7382160 ID=Msa1310770-mRNA-1:cds;Parent=Msa1310770-mRNA-1
chr8_4 CDS 7379607 7379674 7379607 ID=Msa1310770-mRNA-1:cds;Parent=Msa1310770-mRNA-1
chr8_4 CDS 7379416 7379527 7379416 ID=Msa1310770-mRNA-1:cds;Parent=Msa1310770-mRNA-1
chr8_4 CDS 7379174 7379269 7379174 ID=Msa1310770-mRNA-1:cds;Parent=Msa1310770-mRNA-1
chr8_4 three_prime_UTR 7378873 7379173 7378873 ID=Msa1310770-mRNA-1:three_prime_utr;Parent=Msa1310770-mRNA-1
Gene Sequence

>Msa1310770

ATGGCCGCATTCTTAGCTCGGAAATCTCTTCTTGCACTTCGTACCCGCCAGCTTGCTGTGGCAGGTCAAGGGCTGCACAACCCTCAAAATTATGGCATGCGATTGAGTTCACACCTCTACTCTACCAAATTAGAGGACGAAGAAAGGGAGAAACTTGCGAAGGAAATTTCAAAGGATTGGAGTACAGTTTTTGAACGTAGCATCAACACACTTTTTCTCACCGAGCTTGTTCGAGGTCTAATGCTGACGCTGAAATATTTCTTCGATAAAAATGTTACCATCAATTATCCATTTGAGAAAGGCCCATTGAGTCCTCGTTTCCGTGGGGAACATGCACTCAGAAGATATCCAACAGGAGAGGAACGTTGCATTGCTTGCAAACTTTGTGAAGCGGGAAATGGTTGCAGGGTAGGGGAAAGTAACGGTAAGATATGTCCTGCTCAAGCAATAACAATTGAGGCTGAGGAGCGTGAAGATGGCAGCCGTAGGACAACTCGGTATGATATTGACATGACCAAGTGCATCTATTGTGGATTTTGTCAAGAGGCATGCCCAGTTGATGCCATTGTTGAAGGGCCAAACTTTGAATTTTCTACAGAGACTCATGAGGAGCTTTTGTACGACAAAGAGAAGCTGCTTGAAAATGGTGATAGATGGGAAACTGAAATTGCAGAGAACCTGAGATCTGAAAGCCTTTATCGCTGA

Protein sequence

>Msa1310770

MAAFLARKSLLALRTRQLAVAGQGLHNPQNYGMRLSSHLYSTKLEDEEREKLAKEISKDWSTVFERSINTLFLTELVRGLMLTLKYFFDKNVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAGNGCRVGESNGKICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR*