AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120040 MtrunA17_Chr1g0177971 100.000 146 0 0 1 146 1 146 8.78e-110 308
Msa0120040 MtrunA17_Chr8g0391521 80.142 141 28 0 3 143 1 141 4.02e-84 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120040 AT3G52560.1 92.466 146 11 0 1 146 1 146 2.13e-102 289
Msa0120040 AT2G36060.1 93.151 146 9 1 1 146 1 145 6.45e-102 288
Msa0120040 AT3G52560.2 91.837 147 11 1 1 146 1 147 1.09e-100 285
Msa0120040 AT2G36060.2 92.517 147 9 2 1 146 1 146 3.39e-100 284
Msa0120040 AT2G36060.3 92.466 146 9 2 1 146 1 144 1.88e-99 282
Msa0120040 AT3G52560.4 82.317 164 11 1 1 146 1 164 3.77e-98 279
Msa0120040 AT1G23260.1 75.177 141 35 0 3 143 1 141 6.83e-80 233
Msa0120040 AT1G70660.2 73.239 142 38 0 3 144 1 142 2.83e-78 228
Msa0120040 AT1G70660.1 73.239 142 38 0 3 144 1 142 5.19e-78 228
Msa0120040 AT3G52560.3 90.000 110 10 1 38 146 1 110 2.25e-73 215
Msa0120040 AT1G70650.2 73.529 136 36 0 8 143 442 577 4.04e-71 224
Msa0120040 AT1G23260.2 72.642 106 29 0 38 143 1 106 1.24e-57 176

Find 88 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACAGCTTTAAGTGATTTA+AGG 0.114327 1_3:+44676511 Msa0120040:three_prime_UTR
CACCAGTGAGATTGCCATTA+TGG 0.188244 1_3:+44676656 Msa0120040:three_prime_UTR
CTGCCATTTCTTTCTTCAGC+TGG 0.199609 1_3:-44676025 None:intergenic
CGCCTTTATGTTTGCACAAT+TGG 0.226938 1_3:+44676449 Msa0120040:three_prime_UTR
CAGGTTGAACCAAAGAAATT+TGG 0.239713 1_3:+44675954 Msa0120040:intron
CTTCTGAATTCAAGAACATT+TGG 0.253222 1_3:+44676174 Msa0120040:three_prime_UTR
GCGGTTGTTTATTGCGGATT+TGG 0.256038 1_3:+44676477 Msa0120040:three_prime_UTR
AATTTGGGCTTCTTGCAAAT+TGG 0.294147 1_3:+44675970 Msa0120040:CDS
GCAAGAAGCCCAAATTTCTT+TGG 0.297912 1_3:-44675963 None:intergenic
TTCTGAATTCAAGAACATTT+GGG 0.301548 1_3:+44676175 Msa0120040:three_prime_UTR
TGCTGGAGCTAAATGAAAAT+TGG 0.305332 1_3:+44676408 Msa0120040:three_prime_UTR
TGCTAAAAGTAAGTTCCTTC+TGG 0.317643 1_3:-44676077 None:intergenic
TGCTCCTATTTCCATCTCTA+TGG 0.319447 1_3:+44676201 Msa0120040:three_prime_UTR
TCCAAGGAACTTCAGATTGC+TGG 0.330124 1_3:+44674883 Msa0120040:CDS
TCTTGGACTGGCACCATCAT+TGG 0.337902 1_3:+44674989 Msa0120040:CDS
CTGATACCACGCCAGTTTCA+TGG 0.343773 1_3:-44675771 None:intergenic
TATGTTTGCACAATTGGTTT+TGG 0.349919 1_3:+44676455 Msa0120040:three_prime_UTR
TACAGCTTTAAGTGATTTAA+GGG 0.351126 1_3:+44676512 Msa0120040:three_prime_UTR
CTGGAGGCTGGACAAGCTTC+CGG 0.358439 1_3:-44676058 None:intergenic
AGGTTGAACCAAAGAAATTT+GGG 0.360917 1_3:+44675955 Msa0120040:intron
GAGCTTGAACGAGGTGAAAA+AGG 0.363928 1_3:+44674908 Msa0120040:CDS
CAGAGAAATACTTACATTAT+GGG 0.376890 1_3:-44675014 None:intergenic
GTGCTGATTTGCTTGATTGC+AGG 0.389228 1_3:+44676603 Msa0120040:three_prime_UTR
GAAGCCATAGAGATGGAAAT+AGG 0.389417 1_3:-44676205 None:intergenic
TGCCATTTCTTTCTTCAGCT+GGG 0.392353 1_3:-44676024 None:intergenic
AACCAATTGTGCAAACATAA+AGG 0.393339 1_3:-44676451 None:intergenic
CTTCTGCCTTGTAAGTATGC+TGG 0.397725 1_3:+44676391 Msa0120040:three_prime_UTR
AAGAAAATGGAGTGCTGATC+GGG 0.415800 1_3:-44673566 None:intergenic
ATGACATTTACATGCGCTCT+TGG 0.418963 1_3:+44674972 Msa0120040:CDS
AAATGGCAGCCCCTCATAAC+CGG 0.419954 1_3:+44676039 Msa0120040:CDS
TCCATGACGCTTGGCTCAGC+CGG 0.429765 1_3:+44673698 Msa0120040:exon
ATTTACATGCGCTCTTGGAC+TGG 0.438813 1_3:+44674977 Msa0120040:CDS
TGGACAAGCTTCCGGTTATG+AGG 0.443651 1_3:-44676050 None:intergenic
AGTAAGTTCCTTCTGGAGGC+TGG 0.451073 1_3:-44676070 None:intergenic
TCCAGCAATCTGAAGTTCCT+TGG 0.453074 1_3:-44674884 None:intergenic
CAGAAAAGCCGCCAAGTGTT+CGG 0.455334 1_3:+44675716 Msa0120040:CDS
ATCCAACAACTATACGATCT+TGG 0.459484 1_3:-44676101 None:intergenic
ATATAATGTGTAATGCTTTG+TGG 0.467062 1_3:+44676148 Msa0120040:three_prime_UTR
ATCCAAGATCGTATAGTTGT+TGG 0.470173 1_3:+44676099 Msa0120040:three_prime_UTR
ACTTGTGTTAACCATGAAAC+TGG 0.470899 1_3:+44675760 Msa0120040:CDS
GCAGAAGAAAGTAAAGCAAA+AGG 0.474862 1_3:-44676375 None:intergenic
TCACTTAAAGCTGTAGGTGT+AGG 0.490702 1_3:-44676504 None:intergenic
TGCTGATTTGCTTGATTGCA+GGG 0.491262 1_3:+44676604 Msa0120040:three_prime_UTR
AGAGAAATACTTACATTATG+GGG 0.501433 1_3:-44675013 None:intergenic
CTAACCGACGACACTGGATC+CGG 0.502436 1_3:-44673717 None:intergenic
TGCCATAATGGCAATCTCAC+TGG 0.505221 1_3:-44676658 None:intergenic
CACTTAAAGCTGTAGGTGTA+GGG 0.509206 1_3:-44676503 None:intergenic
TACTTTGTCAACTGTGCTGA+AGG 0.510067 1_3:+44676247 Msa0120040:three_prime_UTR
CGTGAATGAAACCGAACACT+TGG 0.519764 1_3:-44675727 None:intergenic
GAAAAGAAGAACGCGAATTG+TGG 0.523498 1_3:-44673620 None:intergenic
GGACAAGCTTCCGGTTATGA+GGG 0.527492 1_3:-44676049 None:intergenic
CAAATGTTCTTGAATTCAGA+AGG 0.529249 1_3:-44676173 None:intergenic
AAAGAAAATGGAGTGCTGAT+CGG 0.531319 1_3:-44673567 None:intergenic
GAATGAAACCGAACACTTGG+CGG 0.532883 1_3:-44675724 None:intergenic
TCCGGCTGAGCCAAGCGTCA+TGG 0.534232 1_3:-44673699 None:intergenic
CAAAATCCATCCATGACGCT+TGG 0.537360 1_3:+44673689 Msa0120040:exon
GACCCAGCTGAAGAAAGAAA+TGG 0.541436 1_3:+44676022 Msa0120040:CDS
TACCATTGTATGTAATCTGA+AGG 0.543246 1_3:-44676331 None:intergenic
TAAGGGGTAGTCTTATTCGT+TGG 0.547578 1_3:+44676529 Msa0120040:three_prime_UTR
CAACTCTGAAGCCATAGAGA+TGG 0.564184 1_3:-44676212 None:intergenic
TTCCTTCAGATTACATACAA+TGG 0.566375 1_3:+44676329 Msa0120040:three_prime_UTR
TTAGCTCCAGCATACTTACA+AGG 0.568432 1_3:-44676397 None:intergenic
CTTAAATCACTTAAAGCTGT+AGG 0.572870 1_3:-44676510 None:intergenic
TGGTAACTAACCGACGACAC+TGG 0.573621 1_3:-44673723 None:intergenic
TACTTTCAGACTGTACATGA+AGG 0.578155 1_3:+44675652 Msa0120040:intron
GCTGAGCCAAGCGTCATGGA+TGG 0.584022 1_3:-44673695 None:intergenic
TCTGAATTCAAGAACATTTG+GGG 0.588666 1_3:+44676176 Msa0120040:three_prime_UTR
GTTAGCTATGGAATGGATGA+TGG 0.588764 1_3:+44674947 Msa0120040:CDS
ATTTGTTGAATATGAACATG+TGG 0.593431 1_3:+44676575 Msa0120040:three_prime_UTR
GGTGATGGCACTGTTAGCTA+TGG 0.599683 1_3:+44674935 Msa0120040:CDS
TGCGCTTCAATGCAGTTCCA+AGG 0.600751 1_3:+44674867 Msa0120040:intron
AAGCTTGTCCAGCCTCCAGA+AGG 0.603455 1_3:+44676062 Msa0120040:CDS
AAGGAACTTCAGATTGCTGG+AGG 0.606974 1_3:+44674886 Msa0120040:CDS
GACAAGCTTCCGGTTATGAG+GGG 0.622492 1_3:-44676048 None:intergenic
TCAGCCGGATCCAGTGTCGT+CGG 0.640126 1_3:+44673713 Msa0120040:CDS
TGGCACTGTTAGCTATGGAA+TGG 0.640972 1_3:+44674940 Msa0120040:CDS
ACTTTGTCAACTGTGCTGAA+GGG 0.643486 1_3:+44676248 Msa0120040:three_prime_UTR
GAGAAATACTTACATTATGG+GGG 0.651874 1_3:-44675012 None:intergenic
GTCCATAAAGAAAAGTACAA+AGG 0.651884 1_3:+44673515 Msa0120040:five_prime_UTR
TTAATTTCACTAATAGCACA+AGG 0.663869 1_3:-44676686 None:intergenic
TTGCTGGAGGAGCTTGAACG+AGG 0.667991 1_3:+44674899 Msa0120040:CDS
GTGAGTGTTGTGGATCTGAT+CGG 0.669660 1_3:-44673661 None:intergenic
TAAAAGTAAGTTCCTTCTGG+AGG 0.670760 1_3:-44676074 None:intergenic
ACAGCTTTAAGTGATTTAAG+GGG 0.684098 1_3:+44676513 Msa0120040:three_prime_UTR
TAATTTCACTAATAGCACAA+GGG 0.699558 1_3:-44676685 None:intergenic
TTGGCAAAGAGAGTACAGCA+TGG 0.708361 1_3:+44675989 Msa0120040:CDS
TGTTAACCATGAAACTGGCG+TGG 0.731270 1_3:+44675765 Msa0120040:CDS
GCAAAGAGAGTACAGCATGG+AGG 0.733074 1_3:+44675992 Msa0120040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAAATAGAAAAAGAAAA+TGG - chr1_3:44673582-44673601 None:intergenic 15.0%
!!! TATGTAATTGTTGTTAATTT+TGG + chr1_3:44673896-44673915 Msa0120040:intron 15.0%
!!! ATGTAATTGTTGTTAATTTT+GGG + chr1_3:44673897-44673916 Msa0120040:intron 15.0%
!!! TGATACTTTAAAAAGAAAAA+TGG + chr1_3:44674391-44674410 Msa0120040:intron 15.0%
!! TAAAAAGAAAAATGGTAAAA+TGG + chr1_3:44674399-44674418 Msa0120040:intron 15.0%
!!! GTTAAGATTTTCTTGAAATT+TGG - chr1_3:44673547-44673566 None:intergenic 20.0%
!! AAAGCATAATTGAGTAAAAA+TGG - chr1_3:44673777-44673796 None:intergenic 20.0%
!!! TTTGTTTTTTTTTTTACCGA+TGG + chr1_3:44673927-44673946 Msa0120040:intron 20.0%
!! CTGTAATTGAATTATAATTC+TGG + chr1_3:44674454-44674473 Msa0120040:intron 20.0%
!! ATATGAAATATTTGTGTATC+TGG + chr1_3:44675520-44675539 Msa0120040:intron 20.0%
!! AATCAAGATTTATATGAAAC+AGG + chr1_3:44675935-44675954 Msa0120040:intron 20.0%
!! GATTTTCTTGAAATTTGGAA+TGG - chr1_3:44673542-44673561 None:intergenic 25.0%
!! AAAACTACATCGATGATTTT+AGG - chr1_3:44673865-44673884 None:intergenic 25.0%
!!! TTTTTTTACCGATGGAATTT+TGG + chr1_3:44673935-44673954 Msa0120040:intron 25.0%
!! ATTGAAATGTTCGATCATTT+TGG + chr1_3:44674057-44674076 Msa0120040:intron 25.0%
! AAAGAAAAATGGTAAAATGG+TGG + chr1_3:44674402-44674421 Msa0120040:intron 25.0%
! GATATGTACAAAATATTAGC+CGG - chr1_3:44674492-44674511 None:intergenic 25.0%
! TATACTACAGATTTAAGCAT+GGG - chr1_3:44674785-44674804 None:intergenic 25.0%
! ATATACTACAGATTTAAGCA+TGG - chr1_3:44674786-44674805 None:intergenic 25.0%
! AGAGAAATACTTACATTATG+GGG - chr1_3:44675016-44675035 None:intergenic 25.0%
! CAGAGAAATACTTACATTAT+GGG - chr1_3:44675017-44675036 None:intergenic 25.0%
! ACAGAGAAATACTTACATTA+TGG - chr1_3:44675018-44675037 None:intergenic 25.0%
!!! AAAACTGGTTCTATCAAATT+AGG - chr1_3:44675132-44675151 None:intergenic 25.0%
! ATATAATGTGTAATGCTTTG+TGG + chr1_3:44676148-44676167 Msa0120040:three_prime_UTR 25.0%
! TTCTGAATTCAAGAACATTT+GGG + chr1_3:44676175-44676194 Msa0120040:three_prime_UTR 25.0%
!!! TACAGCTTTAAGTGATTTAA+GGG + chr1_3:44676512-44676531 Msa0120040:three_prime_UTR 25.0%
!! TCTTATTCGTTGGTAAAAAT+TGG + chr1_3:44676539-44676558 Msa0120040:three_prime_UTR 25.0%
!! ATTTGTTGAATATGAACATG+TGG + chr1_3:44676575-44676594 Msa0120040:three_prime_UTR 25.0%
! TAATTTCACTAATAGCACAA+GGG - chr1_3:44676688-44676707 None:intergenic 25.0%
! TTAATTTCACTAATAGCACA+AGG - chr1_3:44676689-44676708 None:intergenic 25.0%
! TTGTACTTTTCTTTATGGAC+CGG - chr1_3:44673515-44673534 None:intergenic 30.0%
! GTCCATAAAGAAAAGTACAA+AGG + chr1_3:44673515-44673534 Msa0120040:five_prime_UTR 30.0%
! GTCCTTTGTACTTTTCTTTA+TGG - chr1_3:44673520-44673539 None:intergenic 30.0%
AAAAATGGAAACGACGAAAA+CGG - chr1_3:44673762-44673781 None:intergenic 30.0%
!!! CTGTTTTTAGTAGTTTCTTG+TGG + chr1_3:44674136-44674155 Msa0120040:intron 30.0%
!! TTTTTAGTAGTTTCTTGTGG+AGG + chr1_3:44674139-44674158 Msa0120040:intron 30.0%
ATTACAGAAAACTTGCACAA+AGG - chr1_3:44674441-44674460 None:intergenic 30.0%
TTGATGTCTTGTGAATGTAA+AGG + chr1_3:44674554-44674573 Msa0120040:intron 30.0%
TGATGTCTTGTGAATGTAAA+GGG + chr1_3:44674555-44674574 Msa0120040:intron 30.0%
GAGAAATACTTACATTATGG+GGG - chr1_3:44675015-44675034 None:intergenic 30.0%
ATATTACGAACACCTAACAA+TGG - chr1_3:44675054-44675073 None:intergenic 30.0%
! ATTTGATAGAACCAGTTTTG+TGG + chr1_3:44675133-44675152 Msa0120040:intron 30.0%
! CGCATAAACTACAATTTTCA+AGG - chr1_3:44675224-44675243 None:intergenic 30.0%
CATGAACACTTCTTACTTAT+TGG + chr1_3:44675413-44675432 Msa0120040:intron 30.0%
TATCTGGAAATCTGAAAGTT+CGG + chr1_3:44675536-44675555 Msa0120040:intron 30.0%
GATTACATCTCTGATAACAA+TGG - chr1_3:44675919-44675938 None:intergenic 30.0%
AGGTTGAACCAAAGAAATTT+GGG + chr1_3:44675955-44675974 Msa0120040:intron 30.0%
CAAATGTTCTTGAATTCAGA+AGG - chr1_3:44676176-44676195 None:intergenic 30.0%
CTTCTGAATTCAAGAACATT+TGG + chr1_3:44676174-44676193 Msa0120040:three_prime_UTR 30.0%
TCTGAATTCAAGAACATTTG+GGG + chr1_3:44676176-44676195 Msa0120040:three_prime_UTR 30.0%
TTCCTTCAGATTACATACAA+TGG + chr1_3:44676329-44676348 Msa0120040:three_prime_UTR 30.0%
TACCATTGTATGTAATCTGA+AGG - chr1_3:44676334-44676353 None:intergenic 30.0%
AACCAATTGTGCAAACATAA+AGG - chr1_3:44676454-44676473 None:intergenic 30.0%
!! TATGTTTGCACAATTGGTTT+TGG + chr1_3:44676455-44676474 Msa0120040:three_prime_UTR 30.0%
CTTAAATCACTTAAAGCTGT+AGG - chr1_3:44676513-44676532 None:intergenic 30.0%
!! CTACAGCTTTAAGTGATTTA+AGG + chr1_3:44676511-44676530 Msa0120040:three_prime_UTR 30.0%
!! ACAGCTTTAAGTGATTTAAG+GGG + chr1_3:44676513-44676532 Msa0120040:three_prime_UTR 30.0%
! ATTCGTTGGTAAAAATTGGA+TGG + chr1_3:44676543-44676562 Msa0120040:three_prime_UTR 30.0%
!! AAAGAAAATGGAGTGCTGAT+CGG - chr1_3:44673570-44673589 None:intergenic 35.0%
!! TTTTGTTGAAGTGAGTGTTG+TGG - chr1_3:44673674-44673693 None:intergenic 35.0%
!! CATCGATGATTTTAGGTCAA+CGG - chr1_3:44673858-44673877 None:intergenic 35.0%
! TTACCGATGGAATTTTGGAT+CGG + chr1_3:44673940-44673959 Msa0120040:intron 35.0%
! TTCGAGCTGTGAATTTTGTT+CGG + chr1_3:44673973-44673992 Msa0120040:intron 35.0%
ATGAATGTTACTGCATGTGT+CGG + chr1_3:44674249-44674268 Msa0120040:intron 35.0%
! ATTCTGGTTGTTCTTGTTTC+CGG + chr1_3:44674470-44674489 Msa0120040:intron 35.0%
CATATCATGTGTTTATCCTG+AGG + chr1_3:44674506-44674525 Msa0120040:intron 35.0%
TTTCAAATATGTACTGCCTC+AGG - chr1_3:44674525-44674544 None:intergenic 35.0%
AAATCCTAAAACTCAAGGAC+CGG - chr1_3:44674675-44674694 None:intergenic 35.0%
ATGCGAAATCCTAAAACTCA+AGG - chr1_3:44674680-44674699 None:intergenic 35.0%
!!! TGAGTTTTAGGATTTCGCAT+TGG + chr1_3:44674680-44674699 Msa0120040:intron 35.0%
!!! GAGTTTTAGGATTTCGCATT+GGG + chr1_3:44674681-44674700 Msa0120040:intron 35.0%
ATATCCAACTTCCACAAAAC+TGG - chr1_3:44675147-44675166 None:intergenic 35.0%
! TTTATGCGAAGTGTTTACAC+CGG + chr1_3:44675236-44675255 Msa0120040:intron 35.0%
CAAGAACTCAAAAAACATGC+CGG - chr1_3:44675258-44675277 None:intergenic 35.0%
! TCATTTTGTGCGTACTTAAC+AGG + chr1_3:44675593-44675612 Msa0120040:intron 35.0%
TACTTTCAGACTGTACATGA+AGG + chr1_3:44675652-44675671 Msa0120040:intron 35.0%
ACTTGTGTTAACCATGAAAC+TGG + chr1_3:44675760-44675779 Msa0120040:CDS 35.0%
! GAAGATGATATGAAAGCATG+TGG - chr1_3:44675806-44675825 None:intergenic 35.0%
!! AACACAATCTCTCTGCTTTT+TGG + chr1_3:44675879-44675898 Msa0120040:intron 35.0%
! CTCTGATAACAATGGATTCA+AGG - chr1_3:44675911-44675930 None:intergenic 35.0%
! CAGGTTGAACCAAAGAAATT+TGG + chr1_3:44675954-44675973 Msa0120040:intron 35.0%
AATTTGGGCTTCTTGCAAAT+TGG + chr1_3:44675970-44675989 Msa0120040:CDS 35.0%
TAAAAGTAAGTTCCTTCTGG+AGG - chr1_3:44676077-44676096 None:intergenic 35.0%
TGCTAAAAGTAAGTTCCTTC+TGG - chr1_3:44676080-44676099 None:intergenic 35.0%
ATCCAAGATCGTATAGTTGT+TGG + chr1_3:44676099-44676118 Msa0120040:three_prime_UTR 35.0%
ATCCAACAACTATACGATCT+TGG - chr1_3:44676104-44676123 None:intergenic 35.0%
GCAGAAGAAAGTAAAGCAAA+AGG - chr1_3:44676378-44676397 None:intergenic 35.0%
TGCTGGAGCTAAATGAAAAT+TGG + chr1_3:44676408-44676427 Msa0120040:three_prime_UTR 35.0%
!! AAGAAAATGGAGTGCTGATC+GGG - chr1_3:44673569-44673588 None:intergenic 40.0%
GAAAAGAAGAACGCGAATTG+TGG - chr1_3:44673623-44673642 None:intergenic 40.0%
AAAACGGCGATGAGTTAGAT+TGG - chr1_3:44673746-44673765 None:intergenic 40.0%
TCACCGATCCAAAATTCCAT+CGG - chr1_3:44673946-44673965 None:intergenic 40.0%
!! GTGTAGTTGGTGTTAGGATT+CGG + chr1_3:44674271-44674290 Msa0120040:intron 40.0%
TATCCGTACTTCAGAGTTTC+CGG + chr1_3:44674338-44674357 Msa0120040:intron 40.0%
GCGTGGTAAAATATGGAGAA+AGG + chr1_3:44674703-44674722 Msa0120040:intron 40.0%
TAAGCATGGGAGTAGTAACT+AGG - chr1_3:44674772-44674791 None:intergenic 40.0%
! GAACGAGGTGAAAAAGGTAT+TGG + chr1_3:44674914-44674933 Msa0120040:CDS 40.0%
!! GGTGAAAAAGGTATTGGTGA+TGG + chr1_3:44674920-44674939 Msa0120040:CDS 40.0%
GTTAGCTATGGAATGGATGA+TGG + chr1_3:44674947-44674966 Msa0120040:CDS 40.0%
ATGACATTTACATGCGCTCT+TGG + chr1_3:44674972-44674991 Msa0120040:CDS 40.0%
ACTTCTCTGCATCCATTGTT+AGG + chr1_3:44675039-44675058 Msa0120040:intron 40.0%
!! AGAACCAGTTTTGTGGAAGT+TGG + chr1_3:44675140-44675159 Msa0120040:intron 40.0%
! TATGTTCTGTTGCTTCAAGC+TGG - chr1_3:44675186-44675205 None:intergenic 40.0%
CTGTATTTGCACATGAACAC+TGG + chr1_3:44675321-44675340 Msa0120040:intron 40.0%
! TTTTGTGCGTACTTAACAGG+TGG + chr1_3:44675596-44675615 Msa0120040:intron 40.0%
! GTACTTAACAGGTGGTTTTC+AGG + chr1_3:44675604-44675623 Msa0120040:intron 40.0%
GCAAGAAGCCCAAATTTCTT+TGG - chr1_3:44675966-44675985 None:intergenic 40.0%
! TGCCATTTCTTTCTTCAGCT+GGG - chr1_3:44676027-44676046 None:intergenic 40.0%
TGCTCCTATTTCCATCTCTA+TGG + chr1_3:44676201-44676220 Msa0120040:three_prime_UTR 40.0%
GAAGCCATAGAGATGGAAAT+AGG - chr1_3:44676208-44676227 None:intergenic 40.0%
TACTTTGTCAACTGTGCTGA+AGG + chr1_3:44676247-44676266 Msa0120040:three_prime_UTR 40.0%
ACTTTGTCAACTGTGCTGAA+GGG + chr1_3:44676248-44676267 Msa0120040:three_prime_UTR 40.0%
TTAGCTCCAGCATACTTACA+AGG - chr1_3:44676400-44676419 None:intergenic 40.0%
CGCCTTTATGTTTGCACAAT+TGG + chr1_3:44676449-44676468 Msa0120040:three_prime_UTR 40.0%
!!! GTTTGCACAATTGGTTTTGG+CGG + chr1_3:44676458-44676477 Msa0120040:three_prime_UTR 40.0%
!! GTTTTGGCGGTTGTTTATTG+CGG + chr1_3:44676471-44676490 Msa0120040:three_prime_UTR 40.0%
CACTTAAAGCTGTAGGTGTA+GGG - chr1_3:44676506-44676525 None:intergenic 40.0%
TCACTTAAAGCTGTAGGTGT+AGG - chr1_3:44676507-44676526 None:intergenic 40.0%
!! TAAGGGGTAGTCTTATTCGT+TGG + chr1_3:44676529-44676548 Msa0120040:three_prime_UTR 40.0%
!! TGCTGATTTGCTTGATTGCA+GGG + chr1_3:44676604-44676623 Msa0120040:three_prime_UTR 40.0%
! CACAAGGGATTTTGCCATAA+TGG - chr1_3:44676673-44676692 None:intergenic 40.0%
! GTGAGTGTTGTGGATCTGAT+CGG - chr1_3:44673664-44673683 None:intergenic 45.0%
CAAAATCCATCCATGACGCT+TGG + chr1_3:44673689-44673708 Msa0120040:exon 45.0%
ATGCGTGTCAGACACTTTGA+CGG + chr1_3:44674300-44674319 Msa0120040:intron 45.0%
!! TAGCCGGAAACTCTGAAGTA+CGG - chr1_3:44674344-44674363 None:intergenic 45.0%
CATCACACTTATCTCGTAGC+CGG - chr1_3:44674360-44674379 None:intergenic 45.0%
GCTACGAGATAAGTGTGATG+AGG + chr1_3:44674360-44674379 Msa0120040:intron 45.0%
AAGTACGAGTGCACTTGTTC+CGG + chr1_3:44674653-44674672 Msa0120040:intron 45.0%
! TGTTCCGGTCCTTGAGTTTT+AGG + chr1_3:44674668-44674687 Msa0120040:intron 45.0%
GCATTGGGCGTGGTAAAATA+TGG + chr1_3:44674696-44674715 Msa0120040:intron 45.0%
TCCAAGGAACTTCAGATTGC+TGG + chr1_3:44674883-44674902 Msa0120040:CDS 45.0%
! TCCAGCAATCTGAAGTTCCT+TGG - chr1_3:44674887-44674906 None:intergenic 45.0%
AAGGAACTTCAGATTGCTGG+AGG + chr1_3:44674886-44674905 Msa0120040:CDS 45.0%
GAGCTTGAACGAGGTGAAAA+AGG + chr1_3:44674908-44674927 Msa0120040:CDS 45.0%
TGGCACTGTTAGCTATGGAA+TGG + chr1_3:44674940-44674959 Msa0120040:CDS 45.0%
ATTTACATGCGCTCTTGGAC+TGG + chr1_3:44674977-44674996 Msa0120040:CDS 45.0%
TACATTATGGGGGCCAATGA+TGG - chr1_3:44675005-44675024 None:intergenic 45.0%
GCTCACAAGCAACTAAACAC+AGG - chr1_3:44675293-44675312 None:intergenic 45.0%
CATATGCCCTTCCTATGTTC+TGG + chr1_3:44675456-44675475 Msa0120040:intron 45.0%
GAATGAAACCGAACACTTGG+CGG - chr1_3:44675727-44675746 None:intergenic 45.0%
CGTGAATGAAACCGAACACT+TGG - chr1_3:44675730-44675749 None:intergenic 45.0%
TGTTAACCATGAAACTGGCG+TGG + chr1_3:44675765-44675784 Msa0120040:CDS 45.0%
! TTGGCAAAGAGAGTACAGCA+TGG + chr1_3:44675989-44676008 Msa0120040:CDS 45.0%
GACCCAGCTGAAGAAAGAAA+TGG + chr1_3:44676022-44676041 Msa0120040:CDS 45.0%
! CTGCCATTTCTTTCTTCAGC+TGG - chr1_3:44676028-44676047 None:intergenic 45.0%
!! CAACTCTGAAGCCATAGAGA+TGG - chr1_3:44676215-44676234 None:intergenic 45.0%
CTTCTGCCTTGTAAGTATGC+TGG + chr1_3:44676391-44676410 Msa0120040:three_prime_UTR 45.0%
GCGGTTGTTTATTGCGGATT+TGG + chr1_3:44676477-44676496 Msa0120040:three_prime_UTR 45.0%
!! GTGCTGATTTGCTTGATTGC+AGG + chr1_3:44676603-44676622 Msa0120040:three_prime_UTR 45.0%
CACCAGTGAGATTGCCATTA+TGG + chr1_3:44676656-44676675 Msa0120040:three_prime_UTR 45.0%
TGCCATAATGGCAATCTCAC+TGG - chr1_3:44676661-44676680 None:intergenic 45.0%
TGGTAACTAACCGACGACAC+TGG - chr1_3:44673726-44673745 None:intergenic 50.0%
! ACTGCATGTGTCGGTGTAGT+TGG + chr1_3:44674258-44674277 Msa0120040:intron 50.0%
! GTGTCGGTGTAGTTGGTGTT+AGG + chr1_3:44674265-44674284 Msa0120040:intron 50.0%
TTAGGATTTCGCATTGGGCG+TGG + chr1_3:44674686-44674705 Msa0120040:intron 50.0%
TGCGCTTCAATGCAGTTCCA+AGG + chr1_3:44674867-44674886 Msa0120040:intron 50.0%
! GGTGATGGCACTGTTAGCTA+TGG + chr1_3:44674935-44674954 Msa0120040:CDS 50.0%
!! TCTTGGACTGGCACCATCAT+TGG + chr1_3:44674989-44675008 Msa0120040:CDS 50.0%
ATGCCCTTCCTATGTTCTGG+CGG + chr1_3:44675459-44675478 Msa0120040:intron 50.0%
GAAAAGACCCGCCAGAACAT+AGG - chr1_3:44675470-44675489 None:intergenic 50.0%
! GAACACTTGGCGGCTTTTCT+GGG - chr1_3:44675717-44675736 None:intergenic 50.0%
CAGAAAAGCCGCCAAGTGTT+CGG + chr1_3:44675716-44675735 Msa0120040:CDS 50.0%
CTGATACCACGCCAGTTTCA+TGG - chr1_3:44675774-44675793 None:intergenic 50.0%
! GCAAAGAGAGTACAGCATGG+AGG + chr1_3:44675992-44676011 Msa0120040:CDS 50.0%
AAATGGCAGCCCCTCATAAC+CGG + chr1_3:44676039-44676058 Msa0120040:CDS 50.0%
GACAAGCTTCCGGTTATGAG+GGG - chr1_3:44676051-44676070 None:intergenic 50.0%
GGACAAGCTTCCGGTTATGA+GGG - chr1_3:44676052-44676071 None:intergenic 50.0%
TGGACAAGCTTCCGGTTATG+AGG - chr1_3:44676053-44676072 None:intergenic 50.0%
! AGTAAGTTCCTTCTGGAGGC+TGG - chr1_3:44676073-44676092 None:intergenic 50.0%
CTAACCGACGACACTGGATC+CGG - chr1_3:44673720-44673739 None:intergenic 55.0%
TTGCTGGAGGAGCTTGAACG+AGG + chr1_3:44674899-44674918 Msa0120040:CDS 55.0%
TGCCCTTCCTATGTTCTGGC+GGG + chr1_3:44675460-44675479 Msa0120040:intron 55.0%
GACCCGCCAGAACATAGGAA+GGG - chr1_3:44675465-44675484 None:intergenic 55.0%
AGACCCGCCAGAACATAGGA+AGG - chr1_3:44675466-44675485 None:intergenic 55.0%
! CGAACACTTGGCGGCTTTTC+TGG - chr1_3:44675718-44675737 None:intergenic 55.0%
AAGCTTGTCCAGCCTCCAGA+AGG + chr1_3:44676062-44676081 Msa0120040:CDS 55.0%
GCTGAGCCAAGCGTCATGGA+TGG - chr1_3:44673698-44673717 None:intergenic 60.0%
TCCATGACGCTTGGCTCAGC+CGG + chr1_3:44673698-44673717 Msa0120040:exon 60.0%
TCAGCCGGATCCAGTGTCGT+CGG + chr1_3:44673713-44673732 Msa0120040:CDS 60.0%
CTGGAGGCTGGACAAGCTTC+CGG - chr1_3:44676061-44676080 None:intergenic 60.0%
TCCGGCTGAGCCAAGCGTCA+TGG - chr1_3:44673702-44673721 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 44673510 44676720 44673510 ID=Msa0120040;Name=Msa0120040
chr1_3 mRNA 44673510 44676720 44673510 ID=Msa0120040-mRNA-1;Parent=Msa0120040;Name=Msa0120040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=191|1|1|1|1|1|4|623|146
chr1_3 exon 44673510 44673734 44673510 ID=Msa0120040-mRNA-1:exon:13307;Parent=Msa0120040-mRNA-1
chr1_3 exon 44674882 44675021 44674882 ID=Msa0120040-mRNA-1:exon:13308;Parent=Msa0120040-mRNA-1
chr1_3 exon 44675661 44675786 44675661 ID=Msa0120040-mRNA-1:exon:13309;Parent=Msa0120040-mRNA-1
chr1_3 exon 44675957 44676720 44675957 ID=Msa0120040-mRNA-1:exon:13310;Parent=Msa0120040-mRNA-1
chr1_3 five_prime_UTR 44673510 44673700 44673510 ID=Msa0120040-mRNA-1:five_prime_utr;Parent=Msa0120040-mRNA-1
chr1_3 CDS 44673701 44673734 44673701 ID=Msa0120040-mRNA-1:cds;Parent=Msa0120040-mRNA-1
chr1_3 CDS 44674882 44675021 44674882 ID=Msa0120040-mRNA-1:cds;Parent=Msa0120040-mRNA-1
chr1_3 CDS 44675661 44675786 44675661 ID=Msa0120040-mRNA-1:cds;Parent=Msa0120040-mRNA-1
chr1_3 CDS 44675957 44676097 44675957 ID=Msa0120040-mRNA-1:cds;Parent=Msa0120040-mRNA-1
chr1_3 three_prime_UTR 44676098 44676720 44676098 ID=Msa0120040-mRNA-1:three_prime_utr;Parent=Msa0120040-mRNA-1
Gene Sequence

>Msa0120040

ATGACGCTTGGCTCAGCCGGATCCAGTGTCGTCGTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAACGAGGTGAAAAAGGTATTGGTGATGGCACTGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATCATTGGCCCCCATAATACTGTACATGAAGGCAGAATATATCAATTGAAGCTGTTTTGTGACAAAGATTACCCAGAAAAGCCGCCAAGTGTTCGGTTTCATTCACGAATCAATATGACTTGTGTTAACCATGAAACTGGCGTGGTTGAACCAAAGAAATTTGGGCTTCTTGCAAATTGGCAAAGAGAGTACAGCATGGAGGATATACTGACCCAGCTGAAGAAAGAAATGGCAGCCCCTCATAACCGGAAGCTTGTCCAGCCTCCAGAAGGAACTTACTTTTAG

Protein sequence

>Msa0120040

MTLGSAGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYSMEDILTQLKKEMAAPHNRKLVQPPEGTYF*