AlfalfaGEDB | Msa1007150

M. sativa cultivar zhongmu-4 / Msa1007150

KEGG: K22069
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016226 GO:0016604 GO:0019866 GO:0019898 GO:0022607 GO:0031090 GO:0031163 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044455 GO:0044464 GO:0044571 GO:0051186 GO:0070013 GO:0071840 GO:1990221
PFAM: PF05347.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1007150	XP_039684049.1	96.739	92	3	0	3	94	2	93	2.26e-56	179

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1007150	sp\|B5FZA8\|LYRM4_TAEGU	38.158	76	47	0	5	80	2	77	3.03e-12	60.1

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1007150	G7L496	96.739	92	3	0	3	94	2	93	1.08e-56	179

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0031830	Msa1007150	0.812597	3.914263e-51	-8.615850e-47
Msa0101810	Msa1007150	0.809853	1.540550e-50	-8.615850e-47
Msa0638930	Msa1007150	0.818809	1.614394e-52	-8.615850e-47
Msa0640510	Msa1007150	0.807422	5.094925e-50	-8.615850e-47
Msa0133980	Msa1007150	0.800324	1.520033e-48	-8.615850e-47
Msa0215320	Msa1007150	0.811731	6.044905e-51	-8.615850e-47
Msa1007150	Msa1035310	-0.803443	3.477674e-49	-8.615850e-47
Msa1007150	Msa1075220	0.822068	2.887055e-53	-8.615850e-47
Msa1007150	Msa1116440	-0.807028	6.173281e-50	-8.615850e-47
Msa1007150	Msa1139000	0.806146	9.479327e-50	-8.615850e-47
Msa1007150	Msa1162550	0.809337	1.988869e-50	-8.615850e-47
Msa0354800	Msa1007150	0.843345	1.483653e-58	-8.615850e-47
Msa0870530	Msa1007150	-0.808597	2.864779e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1007150	MtrunA17_Chr7g0218621	96.739	92	3	0	3	94	2	93	2.08e-60	179

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1007150	AT5G61220.3	47.561	82	43	8	89	3	84	2.69e-24	88.2
Msa1007150	AT5G61220.1	47.561	82	43	8	89	3	84	2.69e-24	88.2
Msa1007150	AT5G61220.2	47.561	82	43	8	89	3	84	2.69e-24	88.2

Find 21 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGATTAAAAGGGTTTATT+AGG	0.211621	7_1:+6539331	None:intergenic
GCGGAGAAGGGTTAGGGTTT+GGG	0.235231	7_1:+6539570	None:intergenic
AGCGGAGAAGGGTTAGGGTT+TGG	0.288293	7_1:+6539569	None:intergenic
TGAAGGAGCGGAGAAGGGTT+AGG	0.361491	7_1:+6539563	None:intergenic
ATTTCCGAAGCTTTCTCGTT+TGG	0.370472	7_1:-6539436	Msa1007150:CDS
TCCTTCTCTTCCAAGTGTTA+TGG	0.372181	7_1:-6539359	Msa1007150:CDS
GAAGGAGCGGAGAAGGGTTA+GGG	0.385642	7_1:+6539564	None:intergenic
TACTCGCGAATGTTGTAATC+TGG	0.389094	7_1:+6539520	None:intergenic
AAAACGAACCTTGATTAAAA+GGG	0.427832	7_1:+6539322	None:intergenic
CGCGGATGAAGGAGCGGAGA+AGG	0.441206	7_1:+6539557	None:intergenic
TTGTCGAGAAACGCGGATGA+AGG	0.469164	7_1:+6539546	None:intergenic
TCCATAACACTTGGAAGAGA+AGG	0.524453	7_1:+6539358	None:intergenic
GTCGACGACTATGGCGGCGG+CGG	0.544766	7_1:-6539608	None:intergenic
ACTCGCGAATGTTGTAATCT+GGG	0.547868	7_1:+6539521	None:intergenic
TTAGGAAGATCCATAACACT+TGG	0.559900	7_1:+6539349	None:intergenic
CCCGTCGACGACTATGGCGG+CGG	0.566090	7_1:-6539611	None:intergenic
CTGGGAATTGTCGAGAAACG+CGG	0.587534	7_1:+6539539	None:intergenic
GCGGATGAAGGAGCGGAGAA+GGG	0.605292	7_1:+6539558	None:intergenic
AAAGCTTCGGAAATCGAACA+AGG	0.638529	7_1:+6539445	None:intergenic
GAGAAACGCGGATGAAGGAG+CGG	0.654176	7_1:+6539551	None:intergenic
AGCATAAATAGAGTAAACAA+CGG	0.670929	7_1:+6539381	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AGCATAAATAGAGTAAACAA+CGG	+	chr7_1:6539556-6539575	None:intergenic	25.0%
!	TTTTCCAAACGAGAAAGCTT+CGG	+	chr7_1:6539505-6539524	None:intergenic	35.0%
	TTAGGAAGATCCATAACACT+TGG	+	chr7_1:6539588-6539607	None:intergenic	35.0%
!!	GTTAGGGTTTGGGATTTTGA+AGG	+	chr7_1:6539357-6539376	None:intergenic	40.0%
	ACTCGCGAATGTTGTAATCT+GGG	+	chr7_1:6539416-6539435	None:intergenic	40.0%
	TACTCGCGAATGTTGTAATC+TGG	+	chr7_1:6539417-6539436	None:intergenic	40.0%
	AAAGCTTCGGAAATCGAACA+AGG	+	chr7_1:6539492-6539511	None:intergenic	40.0%
	ATTTCCGAAGCTTTCTCGTT+TGG	-	chr7_1:6539498-6539517	Msa1007150:CDS	40.0%
	TCCTTCTCTTCCAAGTGTTA+TGG	-	chr7_1:6539575-6539594	Msa1007150:CDS	40.0%
	TCCATAACACTTGGAAGAGA+AGG	+	chr7_1:6539579-6539598	None:intergenic	40.0%
!	GTTTTGTCGAAACGCATCGA+TGG	+	chr7_1:6539454-6539473	None:intergenic	45.0%
	TTGTCGAGAAACGCGGATGA+AGG	+	chr7_1:6539391-6539410	None:intergenic	50.0%
	CTGGGAATTGTCGAGAAACG+CGG	+	chr7_1:6539398-6539417	None:intergenic	50.0%
	GCGGAGAAGGGTTAGGGTTT+GGG	+	chr7_1:6539367-6539386	None:intergenic	55.0%
	AGCGGAGAAGGGTTAGGGTT+TGG	+	chr7_1:6539368-6539387	None:intergenic	55.0%
	GAAGGAGCGGAGAAGGGTTA+GGG	+	chr7_1:6539373-6539392	None:intergenic	55.0%
	TGAAGGAGCGGAGAAGGGTT+AGG	+	chr7_1:6539374-6539393	None:intergenic	55.0%
	GAGAAACGCGGATGAAGGAG+CGG	+	chr7_1:6539386-6539405	None:intergenic	55.0%
	GCGGATGAAGGAGCGGAGAA+GGG	+	chr7_1:6539379-6539398	None:intergenic	60.0%
	CGCGGATGAAGGAGCGGAGA+AGG	+	chr7_1:6539380-6539399	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	6539336	6539620	6539336	ID=Msa1007150;Name=Msa1007150
chr7_1	mRNA	6539336	6539620	6539336	ID=Msa1007150-mRNA-1;Parent=Msa1007150;Name=Msa1007150-mRNA-1;_AED=0.32;_eAED=0.34;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|94
chr7_1	exon	6539336	6539620	6539336	ID=Msa1007150-mRNA-1:exon:1947;Parent=Msa1007150-mRNA-1
chr7_1	CDS	6539336	6539620	6539336	ID=Msa1007150-mRNA-1:cds;Parent=Msa1007150-mRNA-1

Gene Sequence	>Msa1007150 ATGGCGGCGGCGGCGACACCTTCAAAATCCCAAACCCTAACCCTTCTCCGCTCCTTCATCCGCGTTTCTCGACAATTCCCAGATTACAACATTCGCGAGTACACAAAACGACGCGCCATCGATGCGTTTCGACAAAACGCAACACTTTCTGAACCTTGTTCGATTTCCGAAGCTTTCTCGTTTGGAAAATCTCAGCTTGATGTTGCTAAACGACAAGCCGTTGTTTACTCTATTTATGCTCCTTCTCTTCCAAGTGTTATGGATCTTCCTAATAAACCCTTTTAA
Protein sequence	>Msa1007150 MAAAATPSKSQTLTLLRSFIRVSRQFPDYNIREYTKRRAIDAFRQNATLSEPCSISEAFSFGKSQLDVAKRQAVVYSIYAPSLPSVMDLPNKPF*