AlfalfaGEDB | Msa1010020

M. sativa cultivar zhongmu-4 / Msa1010020

KEGG: K10525
GO: GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068
PFAM: PF06351.14

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010020	XP_013447843.1	92.549	255	14	1	1	255	1	250	4.07e-171	482

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010020	sp\|Q75KD7\|AOC_ORYSJ	74.302	179	44	2	78	255	63	240	2.07e-94	280

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010020	A0A072TWG0	92.549	255	14	1	1	255	1	250	1.94e-171	482

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013270	Msa1010020	0.815613	8.452927e-52	-8.615850e-47
Msa0685060	Msa1010020	0.810044	1.401952e-50	-8.615850e-47
Msa1010020	Msa1029830	0.816656	4.942829e-52	-8.615850e-47
Msa1010020	Msa1029840	0.809183	2.145713e-50	-8.615850e-47
Msa1010020	Msa1051530	0.861687	8.612717e-64	-8.615850e-47
Msa1010020	Msa1068720	0.818947	1.502012e-52	-8.615850e-47
Msa1010020	Msa1068940	0.800109	1.681552e-48	-8.615850e-47
Msa1010020	Msa1068960	0.810579	1.074842e-50	-8.615850e-47
Msa1010020	Msa1156720	0.819254	1.278837e-52	-8.615850e-47
Msa1010020	Msa1156730	0.808674	2.757901e-50	-8.615850e-47
Msa1010020	Msa1223990	0.800336	1.511753e-48	-8.615850e-47
Msa1010020	Msa1321060	0.805635	1.213571e-49	-8.615850e-47
Msa1010020	Msa1407810	0.801282	9.692946e-49	-8.615850e-47
Msa1010020	Msa1433570	0.815468	9.105575e-52	-8.615850e-47
Msa1010020	Msa1437780	0.801928	7.142149e-49	-8.615850e-47
Msa0858250	Msa1010020	-0.802514	5.410574e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010020	MtrunA17_Chr7g0220911	92.549	255	14	1	1	255	1	250	3.74e-175	482
Msa1010020	MtrunA17_Chr4g0034431	77.606	259	52	4	1	255	1	257	4.45e-144	404
Msa1010020	MtrunA17_Chr5g0422541	74.595	185	46	1	71	255	69	252	3.11e-102	297
Msa1010020	MtrunA17_Chr6g0456981	63.404	235	80	4	1	235	1	229	2.44e-100	292
Msa1010020	MtrunA17_Chr6g0456971	56.934	274	94	3	1	255	1	269	2.06e-98	288
Msa1010020	MtrunA17_Chr8g0364271	81.967	122	12	1	1	122	1	112	7.05e-64	196

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010020	AT1G13280.1	64.894	188	63	3	70	255	68	254	2.66e-85	255
Msa1010020	AT3G25780.1	60.664	211	68	5	47	255	61	258	2.96e-83	249
Msa1010020	AT3G25760.1	50.763	262	114	7	1	255	1	254	3.52e-82	247
Msa1010020	AT3G25770.1	59.898	197	72	3	65	255	58	253	4.67e-82	246

Find 57 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAATCTACAGTTTCCATTT+TGG	0.160250	7_1:-12511121	Msa1010020:CDS
GAGGGTGTGCGGAACGATTT+TGG	0.197137	7_1:+12512195	None:intergenic
GAGCCTCATGCTGTCATTGC+TGG	0.269913	7_1:-12510848	Msa1010020:CDS
GGAATATTTGAAGGTGTTAA+AGG	0.277922	7_1:-12511019	Msa1010020:CDS
CTAGCTGTGACTGGTGGTTC+TGG	0.279570	7_1:-12511040	Msa1010020:CDS
CTAATGTCTAATGAGTTTAT+TGG	0.284997	7_1:-12510464	Msa1010020:three_prime_UTR
AGAATGCAGTGTTCATCTTT+AGG	0.295981	7_1:+12512124	None:intergenic
TTGCAAGTAAGAGATTTCTT+AGG	0.355701	7_1:+12512078	None:intergenic
AGTGACCATAGTCTCCAAAA+TGG	0.373031	7_1:+12511107	None:intergenic
TCCTCAGGATAGGTCAAATA+TGG	0.373814	7_1:+12511070	None:intergenic
AATGTGTAGAAAATCTTAAA+AGG	0.374409	7_1:+12510968	None:intergenic
AATTTACTTTGTTGCTGAAT+GGG	0.377067	7_1:+12511638	None:intergenic
GATTTGCCTCAAGAGCTTCT+TGG	0.394018	7_1:-12510926	Msa1010020:CDS
GTTTATTGGTAACTTTCTAA+TGG	0.396328	7_1:-12510450	Msa1010020:three_prime_UTR
AAATTTACTTTGTTGCTGAA+TGG	0.399940	7_1:+12511637	None:intergenic
ACAGCAGGAGAAGGCTCAAC+AGG	0.409306	7_1:+12510899	None:intergenic
TTTGTTGGTTCTTACTAGAT+TGG	0.415643	7_1:+12512326	None:intergenic
TGCTTGGTTATATTGTTTGT+TGG	0.425825	7_1:+12512311	None:intergenic
TTGCTTAATCTCAAGTAAGC+TGG	0.430132	7_1:+12511691	None:intergenic
ATAAACTCATTAGACATTAG+AGG	0.463244	7_1:+12510467	None:intergenic
TGTCAGCATACTCATTTGCT+TGG	0.464345	7_1:+12512052	None:intergenic
AATAAAAGTGTCAATTCTCT+TGG	0.471904	7_1:-12511670	Msa1010020:CDS
TGCTTAATCTCAAGTAAGCT+GGG	0.477724	7_1:+12511692	None:intergenic
GATGATAGAAGAAAATTGCT+TGG	0.477854	7_1:+12512295	None:intergenic
GCAGGAGAAGCTTCAACAGC+AGG	0.485103	7_1:+12510884	None:intergenic
GGTGGTTCTGGAATATTTGA+AGG	0.514948	7_1:-12511028	Msa1010020:CDS
GTTGGATTAACAAAGGAAGA+TGG	0.515342	7_1:+12512234	None:intergenic
TATGGTCACTTAGCAGTTCA+AGG	0.517659	7_1:-12511094	Msa1010020:CDS
CAACACATTGCAGAAAAGAA+AGG	0.527550	7_1:-12511157	Msa1010020:CDS
GGCTCAAGAGACTTAGCAGC+AGG	0.536989	7_1:+12510866	None:intergenic
AAACGTATTGGAATAACAGC+TGG	0.548271	7_1:-12511196	Msa1010020:CDS
TATTGGTAACTTTCTAATGG+TGG	0.555669	7_1:-12510447	Msa1010020:three_prime_UTR
GGGGTGGTGGCAAAAGCAGT+TGG	0.556218	7_1:+12512216	None:intergenic
TAGATAAGTGTCCTCAGGAT+AGG	0.557748	7_1:+12511060	None:intergenic
GAAGGGTGTGAAAGCAGATG+AGG	0.559125	7_1:+12512176	None:intergenic
ACAGCTAGATAAGTGTCCTC+AGG	0.560526	7_1:+12511055	None:intergenic
AGATGAATTTGATGAAGTGA+AGG	0.569673	7_1:+12512158	None:intergenic
TTTCTTCTATCATCAAACAA+TGG	0.571566	7_1:-12512286	Msa1010020:exon
GAAGCTTCAACAGCAGGAGA+AGG	0.572761	7_1:+12510890	None:intergenic
AAGGGTGTGAAAGCAGATGA+GGG	0.572938	7_1:+12512177	None:intergenic
GACACTTATCTAGCTGTGAC+TGG	0.577356	7_1:-12511049	Msa1010020:CDS
AACTCATTAGACATTAGAGG+TGG	0.585606	7_1:+12510470	None:intergenic
TCAAGTAAGCTGGGCTACCA+CGG	0.602620	7_1:+12511701	None:intergenic
TGAACTATGCAGTTGTACAC+AGG	0.609887	7_1:-12511229	Msa1010020:intron
TCTCAAAGCATAGCTTGAAG+AGG	0.618632	7_1:+12512263	None:intergenic
GCAAATGAGTATGCTGACAC+TGG	0.626985	7_1:-12512048	Msa1010020:intron
GGTTTACCAAGAAGCTCTTG+AGG	0.629043	7_1:+12510920	None:intergenic
GATGAATTTGATGAAGTGAA+GGG	0.631012	7_1:+12512159	None:intergenic
AAACCAGCAATGACAGCATG+AGG	0.634146	7_1:+12510845	None:intergenic
AAAAGCAGTTGGATTAACAA+AGG	0.635467	7_1:+12512227	None:intergenic
ACTTATCTAGCTGTGACTGG+TGG	0.640066	7_1:-12511046	Msa1010020:CDS
ACTCATTAGACATTAGAGGT+GGG	0.653603	7_1:+12510471	None:intergenic
GAGCTTAATGAGAGGGACCG+TGG	0.672691	7_1:-12511718	Msa1010020:CDS
TGAAAGCAGATGAGGGTGTG+CGG	0.673399	7_1:+12512184	None:intergenic
TGTGTATGAGCTTAATGAGA+GGG	0.682673	7_1:-12511725	Msa1010020:CDS
ACCATATTTGACCTATCCTG+AGG	0.683765	7_1:-12511071	Msa1010020:CDS
ATGTGTATGAGCTTAATGAG+AGG	0.762359	7_1:-12511726	Msa1010020:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAAAAAATACGTATATATT+TGG	+	chr7_1:12510769-12510788	None:intergenic	10.0%
!!	AAAATGTATCAATAAAAAAA+GGG	+	chr7_1:12510982-12511001	None:intergenic	10.0%
!!	TAAAATGTATCAATAAAAAA+AGG	+	chr7_1:12510983-12511002	None:intergenic	10.0%
!!!	ATTATTGATAGTTTTATTAT+CGG	-	chr7_1:12511181-12511200	Msa1010020:CDS	10.0%
!!	ACCTAATTATAAAAAATTAA+AGG	-	chr7_1:12511250-12511269	Msa1010020:intron	10.0%
!!!	ACCTTTAATTTTTTATAATT+AGG	+	chr7_1:12511254-12511273	None:intergenic	10.0%
!!	TAAACTGAAATATTAATTTA+TGG	+	chr7_1:12512149-12512168	None:intergenic	10.0%
!!	ATTACTGAAAAATTAATTTA+TGG	+	chr7_1:12512180-12512199	None:intergenic	10.0%
!!	TTAAAAAATACGTATATATT+TGG	+	chr7_1:12510769-12510788	None:intergenic	10.0%
!!	AAAATGTATCAATAAAAAAA+GGG	+	chr7_1:12510982-12511001	None:intergenic	10.0%
!!	TAAAATGTATCAATAAAAAA+AGG	+	chr7_1:12510983-12511002	None:intergenic	10.0%
!!!	ATTATTGATAGTTTTATTAT+CGG	-	chr7_1:12511181-12511200	Msa1010020:CDS	10.0%
!!	ACCTAATTATAAAAAATTAA+AGG	-	chr7_1:12511250-12511269	Msa1010020:intron	10.0%
!!!	ACCTTTAATTTTTTATAATT+AGG	+	chr7_1:12511254-12511273	None:intergenic	10.0%
!!	TAAACTGAAATATTAATTTA+TGG	+	chr7_1:12512149-12512168	None:intergenic	10.0%
!!	ATTACTGAAAAATTAATTTA+TGG	+	chr7_1:12512180-12512199	None:intergenic	10.0%
!!!	AAGTTTATTGTGTTTTTTTA+TGG	-	chr7_1:12510789-12510808	Msa1010020:three_prime_UTR	15.0%
!!!	TAAGTTAAAATTTCTTCTTT+TGG	+	chr7_1:12510854-12510873	None:intergenic	15.0%
!!!	ATCCATAAACAATTTTTTAA+TGG	+	chr7_1:12511286-12511305	None:intergenic	15.0%
!!!	TAATTGCAATTTTTTTTCTT+TGG	-	chr7_1:12511338-12511357	Msa1010020:intron	15.0%
!!!	ATTTTATTTAAGAGGTATTA+AGG	-	chr7_1:12511826-12511845	Msa1010020:intron	15.0%
!!!	TAACTAGTTAATTTTATTAG+TGG	-	chr7_1:12511955-12511974	Msa1010020:intron	15.0%
!!!	AAGTTTATTGTGTTTTTTTA+TGG	-	chr7_1:12510789-12510808	Msa1010020:three_prime_UTR	15.0%
!!!	TAAGTTAAAATTTCTTCTTT+TGG	+	chr7_1:12510854-12510873	None:intergenic	15.0%
!!!	ATCCATAAACAATTTTTTAA+TGG	+	chr7_1:12511286-12511305	None:intergenic	15.0%
!!!	TAATTGCAATTTTTTTTCTT+TGG	-	chr7_1:12511338-12511357	Msa1010020:intron	15.0%
!!!	ATTTTATTTAAGAGGTATTA+AGG	-	chr7_1:12511826-12511845	Msa1010020:intron	15.0%
!!!	TAACTAGTTAATTTTATTAG+TGG	-	chr7_1:12511955-12511974	Msa1010020:intron	15.0%
!!	AATAGTTAAGGAATCAAATA+GGG	+	chr7_1:12510936-12510955	None:intergenic	20.0%
!!	CTCCATTAAAAAATTGTTTA+TGG	-	chr7_1:12511281-12511300	Msa1010020:intron	20.0%
!!	TCATAAATCATAAACAAAGA+AGG	+	chr7_1:12511418-12511437	None:intergenic	20.0%
!!	GAATTTAAATGACACAAAAT+GGG	+	chr7_1:12511464-12511483	None:intergenic	20.0%
!!	TGAATTTAAATGACACAAAA+TGG	+	chr7_1:12511465-12511484	None:intergenic	20.0%
!!	AATGTGTAGAAAATCTTAAA+AGG	+	chr7_1:12511809-12511828	None:intergenic	20.0%
!!!	TTCTACACATTTTATTTAAG+AGG	-	chr7_1:12511818-12511837	Msa1010020:intron	20.0%
!!!	AATAATAAGTGTTGTAATGA+TGG	-	chr7_1:12512000-12512019	Msa1010020:intron	20.0%
!!	AATAGTTAAGGAATCAAATA+GGG	+	chr7_1:12510936-12510955	None:intergenic	20.0%
!!	CTCCATTAAAAAATTGTTTA+TGG	-	chr7_1:12511281-12511300	Msa1010020:intron	20.0%
!!	TCATAAATCATAAACAAAGA+AGG	+	chr7_1:12511418-12511437	None:intergenic	20.0%
!!	GAATTTAAATGACACAAAAT+GGG	+	chr7_1:12511464-12511483	None:intergenic	20.0%
!!	TGAATTTAAATGACACAAAA+TGG	+	chr7_1:12511465-12511484	None:intergenic	20.0%
!!	AATGTGTAGAAAATCTTAAA+AGG	+	chr7_1:12511809-12511828	None:intergenic	20.0%
!!!	TTCTACACATTTTATTTAAG+AGG	-	chr7_1:12511818-12511837	Msa1010020:intron	20.0%
!!!	AATAATAAGTGTTGTAATGA+TGG	-	chr7_1:12512000-12512019	Msa1010020:intron	20.0%
!	TTTCTTCTATCATCAAACAA+TGG	-	chr7_1:12510488-12510507	Msa1010020:three_prime_UTR	25.0%
!	CAATAGTTAAGGAATCAAAT+AGG	+	chr7_1:12510937-12510956	None:intergenic	25.0%
!	AAAAAAAGGGAAATGTTAAC+CGG	+	chr7_1:12510969-12510988	None:intergenic	25.0%
!!!	AATAAAAGTGTCAATTCTCT+TGG	-	chr7_1:12511104-12511123	Msa1010020:CDS	25.0%
!	AATTTACTTTGTTGCTGAAT+GGG	+	chr7_1:12511139-12511158	None:intergenic	25.0%
!	AAATTTACTTTGTTGCTGAA+TGG	+	chr7_1:12511140-12511159	None:intergenic	25.0%
!!!	TTCCATGAACTATTTTAGTA+GGG	-	chr7_1:12511227-12511246	Msa1010020:intron	25.0%
!!!	GTGGTTTTTGTTTTGTTTAA+TGG	-	chr7_1:12511974-12511993	Msa1010020:intron	25.0%
!	ATAAACTCATTAGACATTAG+AGG	+	chr7_1:12512310-12512329	None:intergenic	25.0%
!	CTAATGTCTAATGAGTTTAT+TGG	-	chr7_1:12512310-12512329	Msa1010020:five_prime_UTR	25.0%
!!	GTTTATTGGTAACTTTCTAA+TGG	-	chr7_1:12512324-12512343	Msa1010020:five_prime_UTR	25.0%
!	TTTCTTCTATCATCAAACAA+TGG	-	chr7_1:12510488-12510507	Msa1010020:three_prime_UTR	25.0%
!	CAATAGTTAAGGAATCAAAT+AGG	+	chr7_1:12510937-12510956	None:intergenic	25.0%
!	AAAAAAAGGGAAATGTTAAC+CGG	+	chr7_1:12510969-12510988	None:intergenic	25.0%
!!!	AATAAAAGTGTCAATTCTCT+TGG	-	chr7_1:12511104-12511123	Msa1010020:CDS	25.0%
!	AATTTACTTTGTTGCTGAAT+GGG	+	chr7_1:12511139-12511158	None:intergenic	25.0%
!	AAATTTACTTTGTTGCTGAA+TGG	+	chr7_1:12511140-12511159	None:intergenic	25.0%
!!!	TTCCATGAACTATTTTAGTA+GGG	-	chr7_1:12511227-12511246	Msa1010020:intron	25.0%
!!!	GTGGTTTTTGTTTTGTTTAA+TGG	-	chr7_1:12511974-12511993	Msa1010020:intron	25.0%
!	ATAAACTCATTAGACATTAG+AGG	+	chr7_1:12512310-12512329	None:intergenic	25.0%
!	CTAATGTCTAATGAGTTTAT+TGG	-	chr7_1:12512310-12512329	Msa1010020:five_prime_UTR	25.0%
!!	GTTTATTGGTAACTTTCTAA+TGG	-	chr7_1:12512324-12512343	Msa1010020:five_prime_UTR	25.0%
!!	TTTGTTGGTTCTTACTAGAT+TGG	+	chr7_1:12510451-12510470	None:intergenic	30.0%
	TGCTTGGTTATATTGTTTGT+TGG	+	chr7_1:12510466-12510485	None:intergenic	30.0%
	GATGATAGAAGAAAATTGCT+TGG	+	chr7_1:12510482-12510501	None:intergenic	30.0%
	AAAAGCAGTTGGATTAACAA+AGG	+	chr7_1:12510550-12510569	None:intergenic	30.0%
	GATGAATTTGATGAAGTGAA+GGG	+	chr7_1:12510618-12510637	None:intergenic	30.0%
	AGATGAATTTGATGAAGTGA+AGG	+	chr7_1:12510619-12510638	None:intergenic	30.0%
	TTGCAAGTAAGAGATTTCTT+AGG	+	chr7_1:12510699-12510718	None:intergenic	30.0%
	CTAAAATAGTTCATGGAAGT+TGG	+	chr7_1:12511225-12511244	None:intergenic	30.0%
!!!	CTTCCATGAACTATTTTAGT+AGG	-	chr7_1:12511226-12511245	Msa1010020:intron	30.0%
!!	GGAATATTTGAAGGTGTTAA+AGG	-	chr7_1:12511755-12511774	Msa1010020:intron	30.0%
!!!	TGTAATGATGGATTTTGTGA+TGG	-	chr7_1:12512012-12512031	Msa1010020:intron	30.0%
!!	GTGATGGAGATATTTGTTTT+TGG	-	chr7_1:12512028-12512047	Msa1010020:intron	30.0%
!!!	TGTTTTTGGATTGTAATGCT+TGG	-	chr7_1:12512042-12512061	Msa1010020:intron	30.0%
!	TATTGGTAACTTTCTAATGG+TGG	-	chr7_1:12512327-12512346	Msa1010020:five_prime_UTR	30.0%
!!	TTTGTTGGTTCTTACTAGAT+TGG	+	chr7_1:12510451-12510470	None:intergenic	30.0%
	TGCTTGGTTATATTGTTTGT+TGG	+	chr7_1:12510466-12510485	None:intergenic	30.0%
	GATGATAGAAGAAAATTGCT+TGG	+	chr7_1:12510482-12510501	None:intergenic	30.0%
	AAAAGCAGTTGGATTAACAA+AGG	+	chr7_1:12510550-12510569	None:intergenic	30.0%
	GATGAATTTGATGAAGTGAA+GGG	+	chr7_1:12510618-12510637	None:intergenic	30.0%
	AGATGAATTTGATGAAGTGA+AGG	+	chr7_1:12510619-12510638	None:intergenic	30.0%
	TTGCAAGTAAGAGATTTCTT+AGG	+	chr7_1:12510699-12510718	None:intergenic	30.0%
	CTAAAATAGTTCATGGAAGT+TGG	+	chr7_1:12511225-12511244	None:intergenic	30.0%
!!!	CTTCCATGAACTATTTTAGT+AGG	-	chr7_1:12511226-12511245	Msa1010020:intron	30.0%
!!	GGAATATTTGAAGGTGTTAA+AGG	-	chr7_1:12511755-12511774	Msa1010020:intron	30.0%
!!!	TGTAATGATGGATTTTGTGA+TGG	-	chr7_1:12512012-12512031	Msa1010020:intron	30.0%
!!	GTGATGGAGATATTTGTTTT+TGG	-	chr7_1:12512028-12512047	Msa1010020:intron	30.0%
!!!	TGTTTTTGGATTGTAATGCT+TGG	-	chr7_1:12512042-12512061	Msa1010020:intron	30.0%
!	TATTGGTAACTTTCTAATGG+TGG	-	chr7_1:12512327-12512346	Msa1010020:five_prime_UTR	30.0%
	GTTGGATTAACAAAGGAAGA+TGG	+	chr7_1:12510543-12510562	None:intergenic	35.0%
	AGAATGCAGTGTTCATCTTT+AGG	+	chr7_1:12510653-12510672	None:intergenic	35.0%
	ATGTGTATGAGCTTAATGAG+AGG	-	chr7_1:12511048-12511067	Msa1010020:CDS	35.0%
	TGTGTATGAGCTTAATGAGA+GGG	-	chr7_1:12511049-12511068	Msa1010020:CDS	35.0%
	TGCTTAATCTCAAGTAAGCT+GGG	+	chr7_1:12511085-12511104	None:intergenic	35.0%
	TTGCTTAATCTCAAGTAAGC+TGG	+	chr7_1:12511086-12511105	None:intergenic	35.0%
	GTCCCTACTAAAATAGTTCA+TGG	+	chr7_1:12511232-12511251	None:intergenic	35.0%
	GGTGATCTACAAAAACGTAT+TGG	-	chr7_1:12511566-12511585	Msa1010020:intron	35.0%
	AAACGTATTGGAATAACAGC+TGG	-	chr7_1:12511578-12511597	Msa1010020:intron	35.0%
!	CTTTCTTTTCTGCAATGTGT+TGG	+	chr7_1:12511619-12511638	None:intergenic	35.0%
	CAACACATTGCAGAAAAGAA+AGG	-	chr7_1:12511617-12511636	Msa1010020:intron	35.0%
!	GCAATCTACAGTTTCCATTT+TGG	-	chr7_1:12511653-12511672	Msa1010020:CDS	35.0%
!!	AGTTTCCATTTTGGAGACTA+TGG	-	chr7_1:12511662-12511681	Msa1010020:CDS	35.0%
	ACTCATTAGACATTAGAGGT+GGG	+	chr7_1:12512306-12512325	None:intergenic	35.0%
	AACTCATTAGACATTAGAGG+TGG	+	chr7_1:12512307-12512326	None:intergenic	35.0%
	GTTGGATTAACAAAGGAAGA+TGG	+	chr7_1:12510543-12510562	None:intergenic	35.0%
	AGAATGCAGTGTTCATCTTT+AGG	+	chr7_1:12510653-12510672	None:intergenic	35.0%
	ATGTGTATGAGCTTAATGAG+AGG	-	chr7_1:12511048-12511067	Msa1010020:CDS	35.0%
	TGTGTATGAGCTTAATGAGA+GGG	-	chr7_1:12511049-12511068	Msa1010020:CDS	35.0%
	TGCTTAATCTCAAGTAAGCT+GGG	+	chr7_1:12511085-12511104	None:intergenic	35.0%
	TTGCTTAATCTCAAGTAAGC+TGG	+	chr7_1:12511086-12511105	None:intergenic	35.0%
	GTCCCTACTAAAATAGTTCA+TGG	+	chr7_1:12511232-12511251	None:intergenic	35.0%
	GGTGATCTACAAAAACGTAT+TGG	-	chr7_1:12511566-12511585	Msa1010020:intron	35.0%
	AAACGTATTGGAATAACAGC+TGG	-	chr7_1:12511578-12511597	Msa1010020:intron	35.0%
!	CTTTCTTTTCTGCAATGTGT+TGG	+	chr7_1:12511619-12511638	None:intergenic	35.0%
	CAACACATTGCAGAAAAGAA+AGG	-	chr7_1:12511617-12511636	Msa1010020:intron	35.0%
!	GCAATCTACAGTTTCCATTT+TGG	-	chr7_1:12511653-12511672	Msa1010020:CDS	35.0%
!!	AGTTTCCATTTTGGAGACTA+TGG	-	chr7_1:12511662-12511681	Msa1010020:CDS	35.0%
	ACTCATTAGACATTAGAGGT+GGG	+	chr7_1:12512306-12512325	None:intergenic	35.0%
	AACTCATTAGACATTAGAGG+TGG	+	chr7_1:12512307-12512326	None:intergenic	35.0%
	TCTCAAAGCATAGCTTGAAG+AGG	+	chr7_1:12510514-12510533	None:intergenic	40.0%
	TGTCAGCATACTCATTTGCT+TGG	+	chr7_1:12510725-12510744	None:intergenic	40.0%
	GATCTTGTTAATTAGTGCCC+CGG	-	chr7_1:12510811-12510830	Msa1010020:three_prime_UTR	40.0%
	ATCTTGTTAATTAGTGCCCC+GGG	-	chr7_1:12510812-12510831	Msa1010020:three_prime_UTR	40.0%
	TGATTCCTTAACTATTGCCC+CGG	-	chr7_1:12510940-12510959	Msa1010020:CDS	40.0%
	ACACAAAATGGGACTACTAC+GGG	+	chr7_1:12511453-12511472	None:intergenic	40.0%
	GACACAAAATGGGACTACTA+CGG	+	chr7_1:12511454-12511473	None:intergenic	40.0%
	TGAACTATGCAGTTGTACAC+AGG	-	chr7_1:12511545-12511564	Msa1010020:intron	40.0%
	AGTGACCATAGTCTCCAAAA+TGG	+	chr7_1:12511670-12511689	None:intergenic	40.0%
	TATGGTCACTTAGCAGTTCA+AGG	-	chr7_1:12511680-12511699	Msa1010020:CDS	40.0%
	ACCATATTTGACCTATCCTG+AGG	-	chr7_1:12511703-12511722	Msa1010020:CDS	40.0%
	TCCTCAGGATAGGTCAAATA+TGG	+	chr7_1:12511707-12511726	None:intergenic	40.0%
	TAGATAAGTGTCCTCAGGAT+AGG	+	chr7_1:12511717-12511736	None:intergenic	40.0%
!!	GGTGGTTCTGGAATATTTGA+AGG	-	chr7_1:12511746-12511765	Msa1010020:CDS	40.0%
!!	ATGATGCAAAAGTATCCGTG+TGG	-	chr7_1:12512103-12512122	Msa1010020:CDS	40.0%
	ACTCAATGATGACAACCACA+CGG	+	chr7_1:12512121-12512140	None:intergenic	40.0%
	GTGGTTGTCATCATTGAGTT+TGG	-	chr7_1:12512122-12512141	Msa1010020:CDS	40.0%
	TCTCAAAGCATAGCTTGAAG+AGG	+	chr7_1:12510514-12510533	None:intergenic	40.0%
	TGTCAGCATACTCATTTGCT+TGG	+	chr7_1:12510725-12510744	None:intergenic	40.0%
	GATCTTGTTAATTAGTGCCC+CGG	-	chr7_1:12510811-12510830	Msa1010020:three_prime_UTR	40.0%
	ATCTTGTTAATTAGTGCCCC+GGG	-	chr7_1:12510812-12510831	Msa1010020:three_prime_UTR	40.0%
	TGATTCCTTAACTATTGCCC+CGG	-	chr7_1:12510940-12510959	Msa1010020:CDS	40.0%
	ACACAAAATGGGACTACTAC+GGG	+	chr7_1:12511453-12511472	None:intergenic	40.0%
	GACACAAAATGGGACTACTA+CGG	+	chr7_1:12511454-12511473	None:intergenic	40.0%
	TGAACTATGCAGTTGTACAC+AGG	-	chr7_1:12511545-12511564	Msa1010020:intron	40.0%
	AGTGACCATAGTCTCCAAAA+TGG	+	chr7_1:12511670-12511689	None:intergenic	40.0%
	TATGGTCACTTAGCAGTTCA+AGG	-	chr7_1:12511680-12511699	Msa1010020:CDS	40.0%
	ACCATATTTGACCTATCCTG+AGG	-	chr7_1:12511703-12511722	Msa1010020:CDS	40.0%
	TCCTCAGGATAGGTCAAATA+TGG	+	chr7_1:12511707-12511726	None:intergenic	40.0%
	TAGATAAGTGTCCTCAGGAT+AGG	+	chr7_1:12511717-12511736	None:intergenic	40.0%
!!	GGTGGTTCTGGAATATTTGA+AGG	-	chr7_1:12511746-12511765	Msa1010020:CDS	40.0%
!!	ATGATGCAAAAGTATCCGTG+TGG	-	chr7_1:12512103-12512122	Msa1010020:CDS	40.0%
	ACTCAATGATGACAACCACA+CGG	+	chr7_1:12512121-12512140	None:intergenic	40.0%
	GTGGTTGTCATCATTGAGTT+TGG	-	chr7_1:12512122-12512141	Msa1010020:CDS	40.0%
!	AAGGGTGTGAAAGCAGATGA+GGG	+	chr7_1:12510600-12510619	None:intergenic	45.0%
	GCAAATGAGTATGCTGACAC+TGG	-	chr7_1:12510726-12510745	Msa1010020:intron	45.0%
	TCTTGTTAATTAGTGCCCCG+GGG	-	chr7_1:12510813-12510832	Msa1010020:three_prime_UTR	45.0%
	GATTCCTTAACTATTGCCCC+GGG	-	chr7_1:12510941-12510960	Msa1010020:CDS	45.0%
	CACAAAATGGGACTACTACG+GGG	+	chr7_1:12511452-12511471	None:intergenic	45.0%
	ACAGCTAGATAAGTGTCCTC+AGG	+	chr7_1:12511722-12511741	None:intergenic	45.0%
	GACACTTATCTAGCTGTGAC+TGG	-	chr7_1:12511725-12511744	Msa1010020:CDS	45.0%
	ACTTATCTAGCTGTGACTGG+TGG	-	chr7_1:12511728-12511747	Msa1010020:CDS	45.0%
	GATTTGCCTCAAGAGCTTCT+TGG	-	chr7_1:12511848-12511867	Msa1010020:intron	45.0%
	GGTTTACCAAGAAGCTCTTG+AGG	+	chr7_1:12511857-12511876	None:intergenic	45.0%
	AAACCAGCAATGACAGCATG+AGG	+	chr7_1:12511932-12511951	None:intergenic	45.0%
!	AAGGGTGTGAAAGCAGATGA+GGG	+	chr7_1:12510600-12510619	None:intergenic	45.0%
	GCAAATGAGTATGCTGACAC+TGG	-	chr7_1:12510726-12510745	Msa1010020:intron	45.0%
	TCTTGTTAATTAGTGCCCCG+GGG	-	chr7_1:12510813-12510832	Msa1010020:three_prime_UTR	45.0%
	GATTCCTTAACTATTGCCCC+GGG	-	chr7_1:12510941-12510960	Msa1010020:CDS	45.0%
	CACAAAATGGGACTACTACG+GGG	+	chr7_1:12511452-12511471	None:intergenic	45.0%
	ACAGCTAGATAAGTGTCCTC+AGG	+	chr7_1:12511722-12511741	None:intergenic	45.0%
	GACACTTATCTAGCTGTGAC+TGG	-	chr7_1:12511725-12511744	Msa1010020:CDS	45.0%
	ACTTATCTAGCTGTGACTGG+TGG	-	chr7_1:12511728-12511747	Msa1010020:CDS	45.0%
	GATTTGCCTCAAGAGCTTCT+TGG	-	chr7_1:12511848-12511867	Msa1010020:intron	45.0%
	GGTTTACCAAGAAGCTCTTG+AGG	+	chr7_1:12511857-12511876	None:intergenic	45.0%
	AAACCAGCAATGACAGCATG+AGG	+	chr7_1:12511932-12511951	None:intergenic	45.0%
!!!	ATTTTTTTTTTTATCATATT+TGG	+	chr7_1:12512085-12512104	None:intergenic	5.0%
!!!	ATTTTTTTTTTTATCATATT+TGG	+	chr7_1:12512085-12512104	None:intergenic	5.0%
!	AGGGTGTGCGGAACGATTTT+GGG	+	chr7_1:12510581-12510600	None:intergenic	50.0%
!	TGAAAGCAGATGAGGGTGTG+CGG	+	chr7_1:12510593-12510612	None:intergenic	50.0%
!	GAAGGGTGTGAAAGCAGATG+AGG	+	chr7_1:12510601-12510620	None:intergenic	50.0%
	TCAAGTAAGCTGGGCTACCA+CGG	+	chr7_1:12511076-12511095	None:intergenic	50.0%
	GAAGCTTCAACAGCAGGAGA+AGG	+	chr7_1:12511887-12511906	None:intergenic	50.0%
!	AGGGTGTGCGGAACGATTTT+GGG	+	chr7_1:12510581-12510600	None:intergenic	50.0%
!	TGAAAGCAGATGAGGGTGTG+CGG	+	chr7_1:12510593-12510612	None:intergenic	50.0%
!	GAAGGGTGTGAAAGCAGATG+AGG	+	chr7_1:12510601-12510620	None:intergenic	50.0%
	TCAAGTAAGCTGGGCTACCA+CGG	+	chr7_1:12511076-12511095	None:intergenic	50.0%
	GAAGCTTCAACAGCAGGAGA+AGG	+	chr7_1:12511887-12511906	None:intergenic	50.0%
!!	TGTGCGGAACGATTTTGGGG+TGG	+	chr7_1:12510577-12510596	None:intergenic	55.0%
!	GGGTGTGCGGAACGATTTTG+GGG	+	chr7_1:12510580-12510599	None:intergenic	55.0%
!!	GAGGGTGTGCGGAACGATTT+TGG	+	chr7_1:12510582-12510601	None:intergenic	55.0%
	TTAACTATTGCCCCGGGCAC+CGG	-	chr7_1:12510947-12510966	Msa1010020:CDS	55.0%
	GAAATGTTAACCGGTGCCCG+GGG	+	chr7_1:12510960-12510979	None:intergenic	55.0%
	GGAAATGTTAACCGGTGCCC+GGG	+	chr7_1:12510961-12510980	None:intergenic	55.0%
	GGGAAATGTTAACCGGTGCC+CGG	+	chr7_1:12510962-12510981	None:intergenic	55.0%
	GAGCTTAATGAGAGGGACCG+TGG	-	chr7_1:12511056-12511075	Msa1010020:CDS	55.0%
	CTAGCTGTGACTGGTGGTTC+TGG	-	chr7_1:12511734-12511753	Msa1010020:CDS	55.0%
	ACAGCAGGAGAAGGCTCAAC+AGG	+	chr7_1:12511878-12511897	None:intergenic	55.0%
	GCAGGAGAAGCTTCAACAGC+AGG	+	chr7_1:12511893-12511912	None:intergenic	55.0%
	GGCTCAAGAGACTTAGCAGC+AGG	+	chr7_1:12511911-12511930	None:intergenic	55.0%
	GAGCCTCATGCTGTCATTGC+TGG	-	chr7_1:12511926-12511945	Msa1010020:intron	55.0%
!!	TGTGCGGAACGATTTTGGGG+TGG	+	chr7_1:12510577-12510596	None:intergenic	55.0%
!	GGGTGTGCGGAACGATTTTG+GGG	+	chr7_1:12510580-12510599	None:intergenic	55.0%
!!	GAGGGTGTGCGGAACGATTT+TGG	+	chr7_1:12510582-12510601	None:intergenic	55.0%
	TTAACTATTGCCCCGGGCAC+CGG	-	chr7_1:12510947-12510966	Msa1010020:CDS	55.0%
	GAAATGTTAACCGGTGCCCG+GGG	+	chr7_1:12510960-12510979	None:intergenic	55.0%
	GGAAATGTTAACCGGTGCCC+GGG	+	chr7_1:12510961-12510980	None:intergenic	55.0%
	GGGAAATGTTAACCGGTGCC+CGG	+	chr7_1:12510962-12510981	None:intergenic	55.0%
	GAGCTTAATGAGAGGGACCG+TGG	-	chr7_1:12511056-12511075	Msa1010020:CDS	55.0%
	CTAGCTGTGACTGGTGGTTC+TGG	-	chr7_1:12511734-12511753	Msa1010020:CDS	55.0%
	ACAGCAGGAGAAGGCTCAAC+AGG	+	chr7_1:12511878-12511897	None:intergenic	55.0%
	GCAGGAGAAGCTTCAACAGC+AGG	+	chr7_1:12511893-12511912	None:intergenic	55.0%
	GGCTCAAGAGACTTAGCAGC+AGG	+	chr7_1:12511911-12511930	None:intergenic	55.0%
	GAGCCTCATGCTGTCATTGC+TGG	-	chr7_1:12511926-12511945	Msa1010020:intron	55.0%
!	GGGGTGGTGGCAAAAGCAGT+TGG	+	chr7_1:12510561-12510580	None:intergenic	60.0%
!!!	GCGGAACGATTTTGGGGTGG+TGG	+	chr7_1:12510574-12510593	None:intergenic	60.0%
	TAATTAGTGCCCCGGGGCAC+TGG	-	chr7_1:12510819-12510838	Msa1010020:exon	60.0%
	CTTCCTTAACCAGTGCCCCG+GGG	+	chr7_1:12510831-12510850	None:intergenic	60.0%
	GCTTCCTTAACCAGTGCCCC+GGG	+	chr7_1:12510832-12510851	None:intergenic	60.0%
	GGCTTCCTTAACCAGTGCCC+CGG	+	chr7_1:12510833-12510852	None:intergenic	60.0%
	GGTGCCCGGGGCAATAGTTA+AGG	+	chr7_1:12510948-12510967	None:intergenic	60.0%
!	GGGGTGGTGGCAAAAGCAGT+TGG	+	chr7_1:12510561-12510580	None:intergenic	60.0%
!!!	GCGGAACGATTTTGGGGTGG+TGG	+	chr7_1:12510574-12510593	None:intergenic	60.0%
	TAATTAGTGCCCCGGGGCAC+TGG	-	chr7_1:12510819-12510838	Msa1010020:exon	60.0%
	CTTCCTTAACCAGTGCCCCG+GGG	+	chr7_1:12510831-12510850	None:intergenic	60.0%
	GCTTCCTTAACCAGTGCCCC+GGG	+	chr7_1:12510832-12510851	None:intergenic	60.0%
	GGCTTCCTTAACCAGTGCCC+CGG	+	chr7_1:12510833-12510852	None:intergenic	60.0%
	GGTGCCCGGGGCAATAGTTA+AGG	+	chr7_1:12510948-12510967	None:intergenic	60.0%
!!	GTGCCCCGGGGCACTGGTTA+AGG	-	chr7_1:12510825-12510844	Msa1010020:exon	70.0%
!!	GTGCCCCGGGGCACTGGTTA+AGG	-	chr7_1:12510825-12510844	Msa1010020:exon	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	12510444	12512352	12510444	ID=Msa1010020;Name=Msa1010020
chr7_1	mRNA	12510444	12512352	12510444	ID=Msa1010020-mRNA-1;Parent=Msa1010020;Name=Msa1010020-mRNA-1;_AED=0.11;_eAED=0.11;_QI=63\|1\|1\|1\|0.66\|0.5\|4\|180\|255
chr7_1	exon	12510444	12510572	12510444	ID=Msa1010020-mRNA-1:exon:3243;Parent=Msa1010020-mRNA-1
chr7_1	exon	12510784	12511239	12510784	ID=Msa1010020-mRNA-1:exon:3242;Parent=Msa1010020-mRNA-1
chr7_1	exon	12511645	12511766	12511645	ID=Msa1010020-mRNA-1:exon:3241;Parent=Msa1010020-mRNA-1
chr7_1	exon	12512049	12512352	12512049	ID=Msa1010020-mRNA-1:exon:3240;Parent=Msa1010020-mRNA-1
chr7_1	five_prime_UTR	12512290	12512352	12512290	ID=Msa1010020-mRNA-1:five_prime_utr;Parent=Msa1010020-mRNA-1
chr7_1	CDS	12512049	12512289	12512049	ID=Msa1010020-mRNA-1:cds;Parent=Msa1010020-mRNA-1
chr7_1	CDS	12511645	12511766	12511645	ID=Msa1010020-mRNA-1:cds;Parent=Msa1010020-mRNA-1
chr7_1	CDS	12510835	12511239	12510835	ID=Msa1010020-mRNA-1:cds;Parent=Msa1010020-mRNA-1
chr7_1	three_prime_UTR	12510784	12510834	12510784	ID=Msa1010020-mRNA-1:three_prime_utr;Parent=Msa1010020-mRNA-1
chr7_1	three_prime_UTR	12510444	12510572	12510444	ID=Msa1010020-mRNA-1:three_prime_utr;Parent=Msa1010020-mRNA-1

Gene Sequence

>Msa1010020

ATGGCCTCTTCAAGCTATGCTTTGAGAACTATTCCATCTTCCTTTGTTAATCCAACTGCTTTTGCCACCACCCCAAAATCGTTCCGCACACCCTCATCTGCTTTCACACCCTTCACTTCATCAAATTCATCTCTCACAAAGAACCTAAAGATGAACACTGCATTCTCACAATCTTGCTTTTCTTCTGTGCCTAAGAAATCTCTTACTTGCAAAAGCCAAGCAAATGAGTATGCTGACACTGAAAAAGTTCAAGAAATGCATGTGTATGAGCTTAATGAGAGGGACCGTGGTAGCCCAGCTTACTTGAGATTAAGCAATAAAAGTGTCAATTCTCTTGGTGATTTAGTCCCATTCAGCAACAAATTGTACACAGGTGATCTACAAAAACGTATTGGAATAACAGCTGGTATTTGCATATTAATCCAACACATTGCAGAAAAGAAAGGTGACAGATATGAAGCAATCTACAGTTTCCATTTTGGAGACTATGGTCACTTAGCAGTTCAAGGACCATATTTGACCTATCCTGAGGACACTTATCTAGCTGTGACTGGTGGTTCTGGAATATTTGAAGGTGTTAAAGGTCAAGTGAAGTTGCATCAAATTGTTTTTCCTTTTAAGATTTTCTACACATTTTATTTAAGAGGTATTAAGGATTTGCCTCAAGAGCTTCTTGGTAAACCTGTTGAGCCTTCTCCTGCTGTTGAAGCTTCTCCTGCTGCTAAGTCTCTTGAGCCTCATGCTGTCATTGCTGGTTTTACTAACTAG

Protein sequence

>Msa1010020

MASSSYALRTIPSSFVNPTAFATTPKSFRTPSSAFTPFTSSNSSLTKNLKMNTAFSQSCFSSVPKKSLTCKSQANEYADTEKVQEMHVYELNERDRGSPAYLRLSNKSVNSLGDLVPFSNKLYTGDLQKRIGITAGICILIQHIAEKKGDRYEAIYSFHFGDYGHLAVQGPYLTYPEDTYLAVTGGSGIFEGVKGQVKLHQIVFPFKIFYTFYLRGIKDLPQELLGKPVEPSPAVEASPAAKSLEPHAVIAGFTN*