AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1068960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068960 MtrunA17_Chr7g0250391 75.182 411 41 3 1 350 375 785 0.0 583
Msa1068960 MtrunA17_Chr7g0250371 72.771 415 45 5 1 350 376 787 0.0 583
Msa1068960 MtrunA17_Chr7g0250411 78.161 261 53 2 91 350 529 786 2.17e-141 420
Msa1068960 MtrunA17_Chr7g0250411 67.890 109 35 0 1 109 376 484 2.05e-42 157
Msa1068960 MtrunA17_Chr7g0250441 78.927 261 51 2 91 350 28 285 3.65e-141 402
Msa1068960 MtrunA17_Chr7g0250331 78.244 262 52 3 91 350 551 809 4.28e-139 414
Msa1068960 MtrunA17_Chr7g0250331 65.217 115 23 2 1 98 380 494 1.36e-37 143
Msa1068960 MtrunA17_Chr7g0250481 78.313 249 51 1 102 350 555 800 2.70e-135 404
Msa1068960 MtrunA17_Chr7g0250481 75.510 98 23 1 1 98 375 471 5.38e-40 150
Msa1068960 MtrunA17_Chr5g0439271 61.134 247 89 5 102 347 361 601 3.42e-94 292
Msa1068960 MtrunA17_Chr5g0439271 50.000 98 45 2 1 95 190 286 8.85e-19 87.4
Msa1068960 MtrunA17_Chr4g0057461 42.222 405 167 12 1 341 220 621 5.66e-88 277
Msa1068960 MtrunA17_Chr5g0447171 38.621 435 171 10 8 350 80 510 9.07e-86 268
Msa1068960 MtrunA17_Chr4g0057511 41.133 406 178 12 1 348 214 616 2.76e-83 264
Msa1068960 MtrunA17_Chr4g0076611 41.832 404 169 12 1 347 299 693 7.43e-83 265
Msa1068960 MtrunA17_Chr4g0057531 40.931 408 176 11 1 348 375 777 2.99e-82 265
Msa1068960 MtrunA17_Chr7g0261701 53.036 247 105 8 102 347 53 289 3.95e-74 231
Msa1068960 MtrunA17_Chr3g0120521 50.000 248 116 6 102 348 530 770 8.46e-74 243
Msa1068960 MtrunA17_Chr3g0120521 45.263 95 50 2 1 95 372 464 3.57e-16 79.7
Msa1068960 MtrunA17_Chr4g0057491 50.000 250 116 7 102 348 379 622 9.58e-71 232
Msa1068960 MtrunA17_Chr5g0423261 49.200 250 118 7 102 348 379 622 1.50e-68 226
Msa1068960 MtrunA17_Chr4g0057471 38.499 413 177 15 1 347 307 708 9.11e-68 226
Msa1068960 MtrunA17_Chr4g0057481 48.473 262 125 8 91 348 435 690 2.94e-67 224
Msa1068960 MtrunA17_Chr5g0401511 36.675 379 172 10 35 350 390 763 1.87e-64 218
Msa1068960 MtrunA17_Chr4g0053781 36.788 386 175 12 26 347 374 754 2.17e-63 214
Msa1068960 MtrunA17_Chr4g0020651 36.247 389 180 10 25 350 376 759 2.47e-63 214
Msa1068960 MtrunA17_Chr7g0246461 37.221 403 178 15 10 347 347 739 1.02e-60 207
Msa1068960 MtrunA17_Chr3g0134621 36.145 415 186 15 1 345 328 733 2.26e-60 206
Msa1068960 MtrunA17_Chr1g0204321 37.565 386 173 13 25 347 396 776 3.16e-59 204
Msa1068960 MtrunA17_Chr4g0070391 35.659 387 181 12 22 345 368 749 1.14e-58 202
Msa1068960 MtrunA17_Chr4g0037221 35.526 380 176 11 34 347 391 767 1.37e-58 202
Msa1068960 MtrunA17_Chr2g0300751 33.509 379 188 9 28 345 395 770 1.79e-57 199
Msa1068960 MtrunA17_Chr2g0285111 36.776 397 175 14 16 347 400 785 2.45e-57 198
Msa1068960 MtrunA17_Chr2g0303881 44.444 252 128 6 106 347 476 725 7.59e-57 196
Msa1068960 MtrunA17_Chr4g0057061 36.911 382 180 15 22 347 398 774 9.89e-57 197
Msa1068960 MtrunA17_Chr2g0285121 36.432 398 176 15 16 347 396 782 1.43e-55 194
Msa1068960 MtrunA17_Chr5g0407701 35.369 393 187 14 7 348 374 750 5.35e-55 192
Msa1068960 MtrunA17_Chr1g0189251 43.556 225 118 4 130 347 531 753 1.35e-54 191
Msa1068960 MtrunA17_Chr8g0345971 43.805 226 117 5 130 347 535 758 1.92e-54 190
Msa1068960 MtrunA17_Chr1g0152771 35.167 418 190 15 1 345 351 760 2.32e-54 190
Msa1068960 MtrunA17_Chr8g0344971 36.119 371 175 14 34 347 394 759 2.84e-54 190
Msa1068960 MtrunA17_Chr8g0345981 44.493 227 114 6 130 347 534 757 3.29e-53 187
Msa1068960 MtrunA17_Chr5g0398351 35.025 394 197 12 11 350 1119 1507 6.81e-53 188
Msa1068960 MtrunA17_Chr5g0398351 44.248 226 117 7 131 350 514 736 1.50e-46 169
Msa1068960 MtrunA17_Chr4g0026641 34.750 400 183 16 12 347 368 753 2.24e-52 184
Msa1068960 MtrunA17_Chr8g0369891 33.161 386 204 8 11 348 374 753 1.00e-51 182
Msa1068960 MtrunA17_Chr4g0026661 42.629 251 130 9 102 348 20 260 1.22e-51 172
Msa1068960 MtrunA17_Chr8g0345991 41.833 251 132 7 109 347 505 753 5.27e-51 181
Msa1068960 MtrunA17_Chr2g0312861 40.784 255 129 9 102 349 9 248 3.52e-50 170
Msa1068960 MtrunA17_Chr2g0301031 41.176 255 126 10 102 348 9 247 4.07e-50 167
Msa1068960 MtrunA17_Chr8g0344331 42.739 241 122 7 119 348 540 775 6.32e-50 178
Msa1068960 MtrunA17_Chr7g0276151 45.701 221 108 7 136 347 538 755 2.83e-49 176
Msa1068960 MtrunA17_Chr1g0146251 43.673 245 117 8 112 348 504 735 3.94e-49 175
Msa1068960 MtrunA17_Chr8g0351011 32.915 398 191 14 9 347 371 751 4.60e-49 175
Msa1068960 MtrunA17_Chr8g0346361 37.255 255 139 8 102 349 258 498 2.90e-47 167
Msa1068960 MtrunA17_Chr7g0262161 43.265 245 116 9 119 347 523 760 3.82e-47 170
Msa1068960 MtrunA17_Chr8g0345961 40.708 226 124 5 130 347 533 756 4.25e-47 170
Msa1068960 MtrunA17_Chr1g0146271 40.392 255 128 9 102 348 495 733 6.03e-47 169
Msa1068960 MtrunA17_Chr7g0227991 38.521 257 135 10 102 350 495 736 1.14e-46 168
Msa1068960 MtrunA17_Chr8g0377961 41.991 231 127 6 122 348 548 775 2.31e-46 168
Msa1068960 MtrunA17_Chr3g0136151 33.666 401 203 15 5 344 360 758 5.00e-46 167
Msa1068960 MtrunA17_Chr3g0105451 41.256 223 120 7 131 344 55 275 5.31e-46 158
Msa1068960 MtrunA17_Chr8g0334521 37.302 252 138 9 106 349 496 735 7.04e-46 166
Msa1068960 MtrunA17_Chr3g0143251 41.410 227 119 7 131 347 542 764 7.52e-46 166
Msa1068960 MtrunA17_Chr5g0398241 44.843 223 114 7 131 347 534 753 1.27e-45 166
Msa1068960 MtrunA17_Chr5g0398401 44.248 226 117 7 131 350 534 756 1.57e-45 165
Msa1068960 MtrunA17_Chr1g0170081 37.945 253 137 8 102 348 493 731 2.14e-45 165
Msa1068960 MtrunA17_Chr7g0248871 42.667 225 118 8 131 347 542 763 4.16e-45 164
Msa1068960 MtrunA17_Chr2g0301921 41.743 218 107 8 139 348 1 206 1.35e-44 152
Msa1068960 MtrunA17_Chr5g0398331 41.704 223 121 7 131 347 531 750 9.65e-44 160
Msa1068960 MtrunA17_Chr8g0354771 39.912 228 129 6 126 348 540 764 1.52e-43 160
Msa1068960 MtrunA17_Chr8g0354741 40.359 223 125 6 131 348 415 634 1.94e-43 158
Msa1068960 MtrunA17_Chr7g0250461 67.890 109 35 0 1 109 376 484 1.99e-43 156
Msa1068960 MtrunA17_Chr7g0246451 38.976 254 132 8 106 349 507 747 2.06e-43 159
Msa1068960 MtrunA17_Chr6g0470881 39.216 255 135 8 102 349 490 731 5.39e-43 158
Msa1068960 MtrunA17_Chr6g0470851 37.891 256 137 9 102 349 490 731 8.86e-43 157
Msa1068960 MtrunA17_Chr8g0334491 40.435 230 114 9 130 348 511 728 1.57e-42 157
Msa1068960 MtrunA17_Chr7g0266051 32.703 370 183 12 35 349 349 707 8.13e-42 154
Msa1068960 MtrunA17_Chr5g0398311 40.789 228 116 8 131 347 527 746 4.32e-41 153
Msa1068960 MtrunA17_Chr1g0189561 40.969 227 122 8 131 347 536 760 1.76e-40 151
Msa1068960 MtrunA17_Chr6g0480721 40.175 229 115 8 127 347 385 599 2.66e-40 150
Msa1068960 MtrunA17_Chr3g0103081 49.315 146 70 4 206 349 1 144 9.47e-40 137
Msa1068960 MtrunA17_Chr4g0071871 32.547 424 194 18 11 348 397 814 6.93e-39 147
Msa1068960 MtrunA17_Chr3g0079971 38.136 236 121 10 125 348 510 732 2.39e-38 145
Msa1068960 MtrunA17_Chr8g0380961 38.996 259 134 11 108 350 598 848 3.35e-35 136
Msa1068960 MtrunA17_Chr2g0298601 40.260 231 122 9 125 345 587 811 2.80e-34 133
Msa1068960 MtrunA17_Chr2g0302951 38.492 252 133 12 114 350 597 841 2.36e-31 125
Msa1068960 MtrunA17_Chr2g0301011 43.704 135 64 4 102 236 359 481 1.84e-28 115
Msa1068960 MtrunA17_Chr3g0097061 47.222 108 49 2 130 237 331 430 3.98e-26 108
Msa1068960 MtrunA17_Chr8g0376851 40.491 163 87 6 193 347 11 171 2.13e-24 98.2
Msa1068960 MtrunA17_Chr4g0075331 32.751 229 138 9 128 347 516 737 6.35e-23 100
Msa1068960 MtrunA17_Chr5g0436031 35.882 170 96 7 186 347 16 180 1.02e-22 94.7
Msa1068960 MtrunA17_Chr4g0071191 37.580 157 81 6 127 277 105 250 1.13e-22 95.5
Msa1068960 MtrunA17_Chr7g0248861 53.165 79 36 1 131 208 544 622 2.16e-19 89.7
Msa1068960 MtrunA17_Chr7g0248851 38.255 149 82 7 206 347 1 146 2.89e-19 83.6
Msa1068960 MtrunA17_Chr5g0398341 50.000 90 44 1 139 228 1 89 3.78e-18 78.6
Msa1068960 MtrunA17_Chr5g0418921 54.930 71 31 1 130 199 64 134 7.60e-18 80.5
Msa1068960 MtrunA17_Chr8g0376841 28.365 208 102 7 9 170 375 581 5.23e-16 79.3
Msa1068960 MtrunA17_Chr3g0142961 37.037 135 75 6 180 305 4 137 1.07e-15 73.2
Msa1068960 MtrunA17_Chr3g0103071 40.206 97 57 1 1 97 93 188 1.74e-14 72.8
Msa1068960 MtrunA17_Chr3g0077671 48.649 74 37 1 128 200 235 308 6.67e-14 71.6
Msa1068960 MtrunA17_Chr4g0035881 45.000 80 43 1 92 170 238 317 1.47e-13 70.9
Msa1068960 MtrunA17_Chr3g0143231 53.333 60 25 1 114 170 30 89 2.47e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068960 AT2G04160.1 41.278 407 175 10 1 348 370 771 2.25e-84 271
Msa1068960 AT5G59810.1 42.118 406 170 12 1 348 377 775 3.13e-84 271
Msa1068960 AT5G67360.1 39.005 382 169 10 25 347 378 754 1.68e-70 234
Msa1068960 AT2G05920.1 37.166 374 172 9 32 345 377 747 2.49e-63 215
Msa1068960 AT5G45650.2 36.272 397 177 13 16 347 403 788 2.45e-61 210
Msa1068960 AT5G45650.1 36.272 397 177 13 16 347 403 788 2.45e-61 210
Msa1068960 AT5G51750.1 35.749 414 190 15 1 347 370 774 3.38e-57 198
Msa1068960 AT4G34980.1 36.198 384 173 15 32 347 379 758 4.70e-54 189
Msa1068960 AT4G26330.2 44.589 231 118 6 125 347 493 721 1.31e-52 185
Msa1068960 AT4G26330.1 44.589 231 118 6 125 347 507 735 1.66e-52 185
Msa1068960 AT1G20160.2 42.739 241 126 7 119 350 488 725 2.05e-50 179
Msa1068960 AT4G00230.1 33.496 409 189 14 1 347 356 743 3.49e-50 179
Msa1068960 AT1G20160.1 42.739 241 126 7 119 350 527 764 4.74e-50 179
Msa1068960 AT1G32970.1 44.492 236 126 5 118 350 492 725 3.20e-49 176
Msa1068960 AT5G11940.1 41.887 265 135 8 92 350 504 755 5.31e-49 176
Msa1068960 AT3G14240.1 41.909 241 126 9 119 347 531 769 2.75e-48 174
Msa1068960 AT3G14067.1 32.775 418 200 16 1 348 362 768 7.87e-48 172
Msa1068960 AT4G10510.2 41.909 241 133 5 113 350 461 697 1.94e-47 171
Msa1068960 AT4G10510.4 41.909 241 133 5 113 350 476 712 2.23e-47 171
Msa1068960 AT4G10510.1 41.909 241 133 5 113 350 520 756 2.80e-47 171
Msa1068960 AT4G10510.3 41.909 241 133 5 113 350 532 768 2.99e-47 171
Msa1068960 AT5G45640.1 40.909 242 107 6 125 347 527 751 4.58e-47 170
Msa1068960 AT1G01900.1 37.306 386 164 17 32 347 394 771 6.15e-47 170
Msa1068960 AT4G21630.1 43.933 239 128 5 113 348 519 754 8.32e-47 169
Msa1068960 AT4G10550.4 44.196 224 118 6 131 350 493 713 9.74e-47 169
Msa1068960 AT4G10550.2 44.196 224 118 6 131 350 493 713 9.74e-47 169
Msa1068960 AT4G10550.1 43.304 224 120 5 131 350 549 769 1.22e-46 169
Msa1068960 AT4G10550.3 44.196 224 118 6 131 350 565 785 1.30e-46 169
Msa1068960 AT4G10530.1 34.758 351 191 9 35 350 391 738 1.51e-46 169
Msa1068960 AT4G10520.1 43.498 223 121 4 131 350 527 747 1.84e-46 168
Msa1068960 AT4G21640.1 43.515 239 129 5 113 348 493 728 8.82e-46 166
Msa1068960 AT5G59130.2 37.183 355 171 16 32 347 374 715 1.18e-45 166
Msa1068960 AT4G21650.1 42.259 239 132 5 113 348 526 761 1.39e-45 166
Msa1068960 AT5G59120.1 32.086 374 183 11 30 347 369 727 2.22e-45 165
Msa1068960 AT4G15040.2 43.983 241 117 7 113 347 457 685 2.99e-45 164
Msa1068960 AT4G15040.1 43.983 241 117 7 113 347 457 685 2.99e-45 164
Msa1068960 AT5G59130.1 35.440 364 175 14 32 347 370 721 5.35e-45 164
Msa1068960 AT5G59130.4 35.440 364 175 14 32 347 374 725 5.66e-45 164
Msa1068960 AT5G59130.3 35.440 364 175 14 32 347 335 686 5.78e-45 164
Msa1068960 AT5G58840.1 41.107 253 129 9 102 347 467 706 6.08e-45 164
Msa1068960 AT1G32950.2 39.068 279 151 9 86 350 440 713 8.29e-45 164
Msa1068960 AT5G59190.1 43.182 220 108 6 102 316 451 658 8.77e-45 163
Msa1068960 AT1G32950.1 40.928 237 133 5 118 350 531 764 8.94e-45 164
Msa1068960 AT1G32980.1 48.128 187 93 4 135 318 3 188 9.39e-45 152
Msa1068960 AT4G10540.1 40.664 241 136 5 113 350 530 766 9.48e-45 164
Msa1068960 AT1G66220.1 43.750 224 119 7 131 350 527 747 1.12e-44 163
Msa1068960 AT5G59100.1 34.409 372 175 13 32 347 379 737 1.14e-44 163
Msa1068960 AT1G04110.1 40.984 244 128 9 119 350 534 773 1.81e-44 163
Msa1068960 AT1G20150.1 32.266 406 204 14 12 350 372 773 4.30e-44 162
Msa1068960 AT5G58830.1 39.062 256 130 9 102 347 466 705 5.21e-44 161
Msa1068960 AT5G58820.1 42.063 252 126 10 102 347 463 700 5.81e-44 161
Msa1068960 AT1G32960.1 39.831 236 137 4 118 350 535 768 1.30e-43 160
Msa1068960 AT1G32940.4 41.525 236 133 4 118 350 481 714 1.37e-43 160
Msa1068960 AT1G32940.2 41.525 236 133 4 118 350 481 714 1.37e-43 160
Msa1068960 AT1G32940.1 41.525 236 133 4 118 350 532 765 2.10e-43 160
Msa1068960 AT1G66210.1 43.860 228 120 8 128 350 529 753 2.52e-43 159
Msa1068960 AT5G59090.3 38.197 233 126 6 124 347 503 726 8.06e-43 158
Msa1068960 AT5G59090.1 38.197 233 126 6 124 347 505 728 8.40e-43 158
Msa1068960 AT5G03620.1 40.234 256 126 10 110 349 516 760 9.73e-43 158
Msa1068960 AT3G46850.1 33.516 364 185 15 32 347 380 734 2.42e-42 157
Msa1068960 AT4G21323.1 42.553 235 127 7 121 350 565 796 4.16e-42 156
Msa1068960 AT5G59090.2 38.462 234 119 7 124 347 505 723 1.10e-41 155
Msa1068960 AT3G46840.1 34.239 368 173 14 34 347 382 734 1.20e-40 152
Msa1068960 AT4G21326.1 42.791 215 120 3 136 348 475 688 3.50e-40 150
Msa1068960 AT2G39850.1 38.340 253 115 11 118 347 531 765 1.03e-36 140
Msa1068960 AT2G19170.1 38.397 237 119 10 125 345 583 808 2.23e-35 137
Msa1068960 AT2G19170.2 38.397 237 119 10 125 345 583 808 2.23e-35 137
Msa1068960 AT4G30020.3 37.143 245 127 11 117 345 576 809 1.95e-34 134
Msa1068960 AT4G30020.1 37.143 245 127 11 117 345 576 809 1.95e-34 134
Msa1068960 AT4G30020.4 37.143 245 127 11 117 345 576 809 1.95e-34 134
Msa1068960 AT4G30020.2 37.143 245 127 11 117 345 576 809 1.95e-34 134
Msa1068960 AT5G67090.1 37.674 215 104 9 131 336 522 715 4.93e-31 124
Msa1068960 AT4G20430.3 36.015 261 141 12 105 350 602 851 3.01e-29 119
Msa1068960 AT4G20430.1 36.015 261 141 12 105 350 602 851 3.01e-29 119
Msa1068960 AT4G20430.2 36.015 261 141 12 105 350 578 827 3.11e-29 119
Msa1068960 AT5G44530.1 34.733 262 143 11 105 350 587 836 2.24e-27 114
Msa1068960 AT1G30600.1 33.333 243 140 10 123 350 594 829 1.30e-25 108
Msa1068960 AT1G62340.1 31.140 228 145 6 128 348 608 830 2.15e-25 107
Msa1068960 AT5G59110.1 40.123 162 86 8 195 347 7 166 1.83e-23 95.9
Msa1068960 AT5G44530.2 31.707 287 143 12 105 350 587 861 1.24e-22 99.8
Msa1068960 AT4G00230.2 27.753 227 99 7 1 173 356 571 7.23e-15 76.3
Msa1068960 AT5G03620.2 55.556 63 27 1 110 172 516 577 4.17e-14 73.9
Msa1068960 AT5G58840.3 51.429 70 30 2 102 171 467 532 2.13e-13 71.6

Find 77 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAACACTTCATCCTAAT+TGG 0.179111 7_2:-64378437 Msa1068960:CDS
TTTGAAGGATCAAGTGTTCT+TGG 0.260632 7_2:+64379423 None:intergenic
TCCATCGCAGTTCTCCAAAT+TGG 0.263907 7_2:+64377474 None:intergenic
CCAGCAGATCCATTTGCTTA+TGG 0.280964 7_2:-64377890 Msa1068960:CDS
TGTTTATGATCTAAGCATTA+AGG 0.283802 7_2:-64377825 Msa1068960:CDS
GGAAATCAACCAAAAGTTAA+TGG 0.289464 7_2:-64379300 Msa1068960:CDS
ATAGCTGCTGGACTCCAATT+AGG 0.295517 7_2:+64378423 None:intergenic
CATTTGCGCCGAACAGTAAC+AGG 0.295750 7_2:+64377425 None:intergenic
CCTCATGTTGCTGGCACTGC+TGG 0.296064 7_2:-64378465 Msa1068960:CDS
TCCTTGAATTTCAAGAAAAT+AGG 0.302304 7_2:-64377557 Msa1068960:CDS
GATCCATTTGCTTATGGTTC+AGG 0.307657 7_2:-64377884 Msa1068960:CDS
ATGTCTTGCCCTCATGTTGC+TGG 0.319115 7_2:-64378474 Msa1068960:CDS
TCAATCACATTACCAAATCT+TGG 0.323046 7_2:-64377686 Msa1068960:CDS
CCAAATTGGTATTTCCTCCT+TGG 0.339017 7_2:+64377488 None:intergenic
AACATGACATTTACTTGTTC+AGG 0.339929 7_2:-64377740 Msa1068960:CDS
ATAGCATTCAATCCAAGATT+TGG 0.344871 7_2:+64377674 None:intergenic
AAGCCGATACGCGATGCTTT+CGG 0.359804 7_2:-64377920 Msa1068960:CDS
AGGTGCAAAGGGAATGATAT+TGG 0.384445 7_2:-64379322 Msa1068960:CDS
AGTGTTCTCCCATTAACTTT+TGG 0.389948 7_2:+64379291 None:intergenic
CCAAGGAGGAAATACCAATT+TGG 0.404190 7_2:-64377488 Msa1068960:CDS
TTAAACTTCTTATGTGCCTC+TGG 0.407958 7_2:-64377797 Msa1068960:CDS
CCATAAGCAAATGGATCTGC+TGG 0.426262 7_2:+64377890 None:intergenic
AAAATCAGTTGCAGAGGGTC+AGG 0.427586 7_2:-64379358 Msa1068960:CDS
GAAATCAACCAAAAGTTAAT+GGG 0.436950 7_2:-64379299 Msa1068960:CDS
TTTGCTAAAGCTCAATTGCC+TGG 0.440503 7_2:-64377605 Msa1068960:CDS
CCAGGATCCATTGCACTGTT+GGG 0.442368 7_2:+64377851 None:intergenic
TTCTTGAAATTCAAGGAACT+TGG 0.447012 7_2:+64377563 None:intergenic
CCCAACAGTGCAATGGATCC+TGG 0.452923 7_2:-64377851 Msa1068960:CDS
CAAATGGAAAACACATTGTA+AGG 0.453162 7_2:-64377451 Msa1068960:CDS
TCCAGGATCCATTGCACTGT+TGG 0.456255 7_2:+64377850 None:intergenic
GGTGCAAAGGGAATGATATT+GGG 0.466205 7_2:-64379321 Msa1068960:CDS
GCTTTAGCAAAATATGTACT+TGG 0.472138 7_2:+64377617 None:intergenic
GAAAATAAAATCAGTTGCAG+AGG 0.475707 7_2:-64379364 Msa1068960:CDS
GCTTTATCTGCAGGTGCAAA+GGG 0.480217 7_2:-64379333 Msa1068960:CDS
GGAGAACTGCGATGGACAAA+TGG 0.485717 7_2:-64377467 Msa1068960:CDS
GAGTCCAGCAGCTATTAAAT+CGG 0.488824 7_2:-64378415 Msa1068960:CDS
AGATTTGGTAATGTGATTGA+AGG 0.490106 7_2:+64377689 None:intergenic
TGTCTACTGTTGGCAAGCGT+GGG 0.491073 7_2:-64379248 Msa1068960:CDS
TAAGGAGTCCTGTTACTGTT+CGG 0.491957 7_2:-64377433 Msa1068960:CDS
TGTCCTGAACCATAAGCAAA+TGG 0.492197 7_2:+64377881 None:intergenic
CTCGTACAGTTACCAATGTT+GGG 0.496861 7_2:-64377643 Msa1068960:CDS
AAAAGTGAAGGGTAAAATAG+TGG 0.497193 7_2:-64379403 Msa1068960:CDS
TTGTCTACTGTTGGCAAGCG+TGG 0.497571 7_2:-64379249 Msa1068960:CDS
AGCTTTATCTGCAGGTGCAA+AGG 0.502569 7_2:-64379334 Msa1068960:CDS
TAACCAGTCTTTCACTCTAG+TGG 0.508663 7_2:-64379612 Msa1068960:CDS
CTTAGATCATAAACAAGTCC+AGG 0.516996 7_2:+64377833 None:intergenic
TTTCCGAAAGCATCGCGTAT+CGG 0.518862 7_2:+64377917 None:intergenic
ACTCGTACAGTTACCAATGT+TGG 0.525420 7_2:-64377644 Msa1068960:CDS
CGCATCTCGATTTGTCACAT+TGG 0.526272 7_2:+64379568 None:intergenic
AGCATCGCGTATCGGCTTGT+TGG 0.529974 7_2:+64377925 None:intergenic
ATAGCCGATTTAATAGCTGC+TGG 0.534311 7_2:+64378411 None:intergenic
GGTCAGGAAGCTTTATCTGC+AGG 0.537188 7_2:-64379342 Msa1068960:CDS
ACTAGAGTGAAAGACTGGTT+AGG 0.537957 7_2:+64379614 None:intergenic
TTAGCAAAATATGTACTTGG+TGG 0.539645 7_2:+64377620 None:intergenic
ACTTGATCCTTCAAAAGTGA+AGG 0.543314 7_2:-64379415 Msa1068960:CDS
AATCCACTAGAGTGAAAGAC+TGG 0.563936 7_2:+64379609 None:intergenic
TTTCGGTTCAATGTAATGCA+AGG 0.571225 7_2:-64378504 Msa1068960:CDS
TAGTGGCATGTGCTCGAGAA+GGG 0.575325 7_2:-64379386 Msa1068960:CDS
ACCAATTTGGAGAACTGCGA+TGG 0.575446 7_2:-64377475 Msa1068960:CDS
TGTACTTGGTGGCCCAACAT+TGG 0.575865 7_2:+64377631 None:intergenic
GATTTGGTAATGTGATTGAA+GGG 0.580904 7_2:+64377690 None:intergenic
ATAGTGGCATGTGCTCGAGA+AGG 0.586294 7_2:-64379387 Msa1068960:CDS
AAATCGGCTATCATGACCAC+TGG 0.587876 7_2:-64378399 Msa1068960:intron
GAAAGACTGGTTAGGTGGCA+AGG 0.597620 7_2:+64379622 None:intergenic
TATTCAACCCAACAGTGCAA+TGG 0.598990 7_2:-64377858 Msa1068960:CDS
CCAGCAGTGCCAGCAACATG+AGG 0.600961 7_2:+64378465 None:intergenic
AACATGAGGGCAAGACATAG+AGG 0.602418 7_2:+64378479 None:intergenic
CTTGATCCTTCAAAAGTGAA+GGG 0.607343 7_2:-64379414 Msa1068960:CDS
CAGCAGTGCCAGCAACATGA+GGG 0.612431 7_2:+64378466 None:intergenic
AAAATAAAATCAGTTGCAGA+GGG 0.623854 7_2:-64379363 Msa1068960:CDS
AAACCTCGACGATTGTCTGT+TGG 0.635715 7_2:+64378525 None:intergenic
AGAGTGAAAGACTGGTTAGG+TGG 0.647696 7_2:+64379617 None:intergenic
GAGTTGCTTATTGTATCCAG+AGG 0.674394 7_2:+64377781 None:intergenic
AAGCAACAAGTGTGACACCA+AGG 0.681649 7_2:-64377505 Msa1068960:CDS
TTACCAACAGACAATCGTCG+AGG 0.726503 7_2:-64378528 Msa1068960:CDS
CAACAAGTGTGACACCAAGG+AGG 0.736484 7_2:-64377502 Msa1068960:CDS
CCAACAGTAGACAAAACATG+AGG 0.736506 7_2:+64379258 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAATTAATTATTACG+TGG + chr7_2:64377883-64377902 None:intergenic 10.0%
!! TTATATAATTAATTATTACG+TGG + chr7_2:64377883-64377902 None:intergenic 10.0%
!! ATATTAAAAGATTGTTACAA+GGG + chr7_2:64377933-64377952 None:intergenic 15.0%
!! AATATTAAAAGATTGTTACA+AGG + chr7_2:64377934-64377953 None:intergenic 15.0%
!!! AACCAAAACTTTTTTTTTTA+CGG + chr7_2:64378028-64378047 None:intergenic 15.0%
!!! TCTATATATGTTCAAATTTT+CGG + chr7_2:64378391-64378410 None:intergenic 15.0%
!! ATCAAGATTATATATGATTA+AGG - chr7_2:64378834-64378853 Msa1068960:intron 15.0%
!! TCAAGATTATATATGATTAA+GGG - chr7_2:64378835-64378854 Msa1068960:intron 15.0%
!! ATATTAAAAGATTGTTACAA+GGG + chr7_2:64377933-64377952 None:intergenic 15.0%
!! AATATTAAAAGATTGTTACA+AGG + chr7_2:64377934-64377953 None:intergenic 15.0%
!!! AACCAAAACTTTTTTTTTTA+CGG + chr7_2:64378028-64378047 None:intergenic 15.0%
!!! TCTATATATGTTCAAATTTT+CGG + chr7_2:64378391-64378410 None:intergenic 15.0%
!! ATCAAGATTATATATGATTA+AGG - chr7_2:64378834-64378853 Msa1068960:intron 15.0%
!! TCAAGATTATATATGATTAA+GGG - chr7_2:64378835-64378854 Msa1068960:intron 15.0%
!! AATATATGACTACGTATAAA+TGG + chr7_2:64377994-64378013 None:intergenic 20.0%
!! AATAATACCTTGAGTATATA+AGG + chr7_2:64378153-64378172 None:intergenic 20.0%
!!! TATATATGTTCAAATTTTCG+GGG + chr7_2:64378389-64378408 None:intergenic 20.0%
!!! CTATATATGTTCAAATTTTC+GGG + chr7_2:64378390-64378409 None:intergenic 20.0%
!!! TTTATGTTGATTGTTCAATA+TGG - chr7_2:64378423-64378442 Msa1068960:CDS 20.0%
!! CATAGATCATATATATTCAT+TGG + chr7_2:64378894-64378913 None:intergenic 20.0%
!! CAATGAATATATATGATCTA+TGG - chr7_2:64378892-64378911 Msa1068960:intron 20.0%
!! AATATATGACTACGTATAAA+TGG + chr7_2:64377994-64378013 None:intergenic 20.0%
!! AATAATACCTTGAGTATATA+AGG + chr7_2:64378153-64378172 None:intergenic 20.0%
!!! TATATATGTTCAAATTTTCG+GGG + chr7_2:64378389-64378408 None:intergenic 20.0%
!!! CTATATATGTTCAAATTTTC+GGG + chr7_2:64378390-64378409 None:intergenic 20.0%
!!! TTTATGTTGATTGTTCAATA+TGG - chr7_2:64378423-64378442 Msa1068960:CDS 20.0%
!! CATAGATCATATATATTCAT+TGG + chr7_2:64378894-64378913 None:intergenic 20.0%
!! CAATGAATATATATGATCTA+TGG - chr7_2:64378892-64378911 Msa1068960:intron 20.0%
! AAAATAAAATCAGTTGCAGA+GGG - chr7_2:64377702-64377721 Msa1068960:CDS 25.0%
! GAAATCAACCAAAAGTTAAT+GGG - chr7_2:64377766-64377785 Msa1068960:CDS 25.0%
!! CTCCGTAAAAAAAAAAGTTT+TGG - chr7_2:64378023-64378042 Msa1068960:intron 25.0%
!!! AAAAAAAAGTTTTGGTTTGC+AGG - chr7_2:64378031-64378050 Msa1068960:intron 25.0%
!!! AAAAAAAGTTTTGGTTTGCA+GGG - chr7_2:64378032-64378051 Msa1068960:intron 25.0%
! TCACAAGCAAAAACTTTATA+TGG - chr7_2:64378069-64378088 Msa1068960:intron 25.0%
! ATATAAGGTTGAACTTGATT+AGG + chr7_2:64378138-64378157 None:intergenic 25.0%
!! TCAAGGTATTATTATACACT+TGG - chr7_2:64378160-64378179 Msa1068960:intron 25.0%
!! TAAGATTTTGAATGAGAATG+TGG - chr7_2:64378301-64378320 Msa1068960:intron 25.0%
!! ATATATGTTCAAATTTTCGG+GGG + chr7_2:64378388-64378407 None:intergenic 25.0%
! TACCATCGTAATTATAATAG+TGG - chr7_2:64378751-64378770 Msa1068960:intron 25.0%
! ATCCACTATTATAATTACGA+TGG + chr7_2:64378756-64378775 None:intergenic 25.0%
! TGTTTATGATCTAAGCATTA+AGG - chr7_2:64379240-64379259 Msa1068960:CDS 25.0%
!! ACAACAACAATTTTATATCC+AGG + chr7_2:64379481-64379500 None:intergenic 25.0%
! TCCTTGAATTTCAAGAAAAT+AGG - chr7_2:64379508-64379527 Msa1068960:intron 25.0%
!! ACCTATTTTCTTGAAATTCA+AGG + chr7_2:64379512-64379531 None:intergenic 25.0%
! AAAATAAAATCAGTTGCAGA+GGG - chr7_2:64377702-64377721 Msa1068960:CDS 25.0%
! GAAATCAACCAAAAGTTAAT+GGG - chr7_2:64377766-64377785 Msa1068960:CDS 25.0%
!! CTCCGTAAAAAAAAAAGTTT+TGG - chr7_2:64378023-64378042 Msa1068960:intron 25.0%
!!! AAAAAAAAGTTTTGGTTTGC+AGG - chr7_2:64378031-64378050 Msa1068960:intron 25.0%
!!! AAAAAAAGTTTTGGTTTGCA+GGG - chr7_2:64378032-64378051 Msa1068960:intron 25.0%
! TCACAAGCAAAAACTTTATA+TGG - chr7_2:64378069-64378088 Msa1068960:intron 25.0%
! ATATAAGGTTGAACTTGATT+AGG + chr7_2:64378138-64378157 None:intergenic 25.0%
!! TCAAGGTATTATTATACACT+TGG - chr7_2:64378160-64378179 Msa1068960:intron 25.0%
!! TAAGATTTTGAATGAGAATG+TGG - chr7_2:64378301-64378320 Msa1068960:intron 25.0%
!! ATATATGTTCAAATTTTCGG+GGG + chr7_2:64378388-64378407 None:intergenic 25.0%
! TACCATCGTAATTATAATAG+TGG - chr7_2:64378751-64378770 Msa1068960:intron 25.0%
! ATCCACTATTATAATTACGA+TGG + chr7_2:64378756-64378775 None:intergenic 25.0%
! TGTTTATGATCTAAGCATTA+AGG - chr7_2:64379240-64379259 Msa1068960:CDS 25.0%
!! ACAACAACAATTTTATATCC+AGG + chr7_2:64379481-64379500 None:intergenic 25.0%
! TCCTTGAATTTCAAGAAAAT+AGG - chr7_2:64379508-64379527 Msa1068960:intron 25.0%
!! ACCTATTTTCTTGAAATTCA+AGG + chr7_2:64379512-64379531 None:intergenic 25.0%
! TACTACTGATGTAAAGCTTT+TGG + chr7_2:64377535-64377554 None:intergenic 30.0%
AAAAGCTTTACATCAGTAGT+AGG - chr7_2:64377534-64377553 Msa1068960:CDS 30.0%
!! ATTTTACCCTTCACTTTTGA+AGG + chr7_2:64377660-64377679 None:intergenic 30.0%
AAAAGTGAAGGGTAAAATAG+TGG - chr7_2:64377662-64377681 Msa1068960:CDS 30.0%
GAAAATAAAATCAGTTGCAG+AGG - chr7_2:64377701-64377720 Msa1068960:CDS 30.0%
GGAAATCAACCAAAAGTTAA+TGG - chr7_2:64377765-64377784 Msa1068960:CDS 30.0%
AGTTCAACCTTATATACTCA+AGG - chr7_2:64378143-64378162 Msa1068960:intron 30.0%
AACAACAACACAAGTGAAAT+TGG + chr7_2:64378330-64378349 None:intergenic 30.0%
TCAAAACACTTCATCCTAAT+TGG - chr7_2:64378628-64378647 Msa1068960:intron 30.0%
! AATTTTGTCATCTTCCGATT+GGG + chr7_2:64378866-64378885 None:intergenic 30.0%
! CTGAGAAATGTGATTTTACT+GGG + chr7_2:64379005-64379024 None:intergenic 30.0%
! ACTGAGAAATGTGATTTTAC+TGG + chr7_2:64379006-64379025 None:intergenic 30.0%
!! ATCTTGTCATTTGGACTTTT+TGG - chr7_2:64379028-64379047 Msa1068960:intron 30.0%
AACATGACATTTACTTGTTC+AGG - chr7_2:64379325-64379344 Msa1068960:CDS 30.0%
!! GATTTGGTAATGTGATTGAA+GGG + chr7_2:64379378-64379397 None:intergenic 30.0%
!! AGATTTGGTAATGTGATTGA+AGG + chr7_2:64379379-64379398 None:intergenic 30.0%
TCAATCACATTACCAAATCT+TGG - chr7_2:64379379-64379398 Msa1068960:CDS 30.0%
ATAGCATTCAATCCAAGATT+TGG + chr7_2:64379394-64379413 None:intergenic 30.0%
TTAGCAAAATATGTACTTGG+TGG + chr7_2:64379448-64379467 None:intergenic 30.0%
GCTTTAGCAAAATATGTACT+TGG + chr7_2:64379451-64379470 None:intergenic 30.0%
TTCTTGAAATTCAAGGAACT+TGG + chr7_2:64379505-64379524 None:intergenic 30.0%
CAAATGGAAAACACATTGTA+AGG - chr7_2:64379614-64379633 Msa1068960:CDS 30.0%
! TACTACTGATGTAAAGCTTT+TGG + chr7_2:64377535-64377554 None:intergenic 30.0%
AAAAGCTTTACATCAGTAGT+AGG - chr7_2:64377534-64377553 Msa1068960:CDS 30.0%
!! ATTTTACCCTTCACTTTTGA+AGG + chr7_2:64377660-64377679 None:intergenic 30.0%
AAAAGTGAAGGGTAAAATAG+TGG - chr7_2:64377662-64377681 Msa1068960:CDS 30.0%
GAAAATAAAATCAGTTGCAG+AGG - chr7_2:64377701-64377720 Msa1068960:CDS 30.0%
GGAAATCAACCAAAAGTTAA+TGG - chr7_2:64377765-64377784 Msa1068960:CDS 30.0%
AGTTCAACCTTATATACTCA+AGG - chr7_2:64378143-64378162 Msa1068960:intron 30.0%
AACAACAACACAAGTGAAAT+TGG + chr7_2:64378330-64378349 None:intergenic 30.0%
TCAAAACACTTCATCCTAAT+TGG - chr7_2:64378628-64378647 Msa1068960:intron 30.0%
! AATTTTGTCATCTTCCGATT+GGG + chr7_2:64378866-64378885 None:intergenic 30.0%
! CTGAGAAATGTGATTTTACT+GGG + chr7_2:64379005-64379024 None:intergenic 30.0%
! ACTGAGAAATGTGATTTTAC+TGG + chr7_2:64379006-64379025 None:intergenic 30.0%
!! ATCTTGTCATTTGGACTTTT+TGG - chr7_2:64379028-64379047 Msa1068960:intron 30.0%
AACATGACATTTACTTGTTC+AGG - chr7_2:64379325-64379344 Msa1068960:CDS 30.0%
!! GATTTGGTAATGTGATTGAA+GGG + chr7_2:64379378-64379397 None:intergenic 30.0%
!! AGATTTGGTAATGTGATTGA+AGG + chr7_2:64379379-64379398 None:intergenic 30.0%
TCAATCACATTACCAAATCT+TGG - chr7_2:64379379-64379398 Msa1068960:CDS 30.0%
ATAGCATTCAATCCAAGATT+TGG + chr7_2:64379394-64379413 None:intergenic 30.0%
TTAGCAAAATATGTACTTGG+TGG + chr7_2:64379448-64379467 None:intergenic 30.0%
GCTTTAGCAAAATATGTACT+TGG + chr7_2:64379451-64379470 None:intergenic 30.0%
TTCTTGAAATTCAAGGAACT+TGG + chr7_2:64379505-64379524 None:intergenic 30.0%
CAAATGGAAAACACATTGTA+AGG - chr7_2:64379614-64379633 Msa1068960:CDS 30.0%
TTTGAAGGATCAAGTGTTCT+TGG + chr7_2:64377645-64377664 None:intergenic 35.0%
ACTTGATCCTTCAAAAGTGA+AGG - chr7_2:64377650-64377669 Msa1068960:CDS 35.0%
CTTGATCCTTCAAAAGTGAA+GGG - chr7_2:64377651-64377670 Msa1068960:CDS 35.0%
! AGTGTTCTCCCATTAACTTT+TGG + chr7_2:64377777-64377796 None:intergenic 35.0%
!!! GCAGTTGTTTTTATACGAGA+AGG + chr7_2:64377861-64377880 None:intergenic 35.0%
TTTCGGTTCAATGTAATGCA+AGG - chr7_2:64378561-64378580 Msa1068960:intron 35.0%
! CTATATATAGTTTGTGCGTG+TGG + chr7_2:64378711-64378730 None:intergenic 35.0%
CACACGCACAAACTATATAT+AGG - chr7_2:64378709-64378728 Msa1068960:intron 35.0%
GATTAAGGGAAAATCCCAAT+CGG - chr7_2:64378849-64378868 Msa1068960:intron 35.0%
! CAATTTTGTCATCTTCCGAT+TGG + chr7_2:64378867-64378886 None:intergenic 35.0%
CAATCGGAAGATGACAAAAT+TGG - chr7_2:64378865-64378884 Msa1068960:intron 35.0%
TCTCAGTAGATCTTGTCATT+TGG - chr7_2:64379019-64379038 Msa1068960:intron 35.0%
! CAATCTCACATTTTCTTGAC+AGG + chr7_2:64379099-64379118 None:intergenic 35.0%
CTTAGATCATAAACAAGTCC+AGG + chr7_2:64379235-64379254 None:intergenic 35.0%
TTAAACTTCTTATGTGCCTC+TGG - chr7_2:64379268-64379287 Msa1068960:CDS 35.0%
TTTGAAGGATCAAGTGTTCT+TGG + chr7_2:64377645-64377664 None:intergenic 35.0%
ACTTGATCCTTCAAAAGTGA+AGG - chr7_2:64377650-64377669 Msa1068960:CDS 35.0%
CTTGATCCTTCAAAAGTGAA+GGG - chr7_2:64377651-64377670 Msa1068960:CDS 35.0%
! AGTGTTCTCCCATTAACTTT+TGG + chr7_2:64377777-64377796 None:intergenic 35.0%
!!! GCAGTTGTTTTTATACGAGA+AGG + chr7_2:64377861-64377880 None:intergenic 35.0%
TTTCGGTTCAATGTAATGCA+AGG - chr7_2:64378561-64378580 Msa1068960:intron 35.0%
! CTATATATAGTTTGTGCGTG+TGG + chr7_2:64378711-64378730 None:intergenic 35.0%
CACACGCACAAACTATATAT+AGG - chr7_2:64378709-64378728 Msa1068960:intron 35.0%
GATTAAGGGAAAATCCCAAT+CGG - chr7_2:64378849-64378868 Msa1068960:intron 35.0%
! CAATTTTGTCATCTTCCGAT+TGG + chr7_2:64378867-64378886 None:intergenic 35.0%
CAATCGGAAGATGACAAAAT+TGG - chr7_2:64378865-64378884 Msa1068960:intron 35.0%
TCTCAGTAGATCTTGTCATT+TGG - chr7_2:64379019-64379038 Msa1068960:intron 35.0%
! CAATCTCACATTTTCTTGAC+AGG + chr7_2:64379099-64379118 None:intergenic 35.0%
CTTAGATCATAAACAAGTCC+AGG + chr7_2:64379235-64379254 None:intergenic 35.0%
TTAAACTTCTTATGTGCCTC+TGG - chr7_2:64379268-64379287 Msa1068960:CDS 35.0%
TGGCAAGGTTACAAAAAGAC+TGG + chr7_2:64377431-64377450 None:intergenic 40.0%
! ACTAGAGTGAAAGACTGGTT+AGG + chr7_2:64377454-64377473 None:intergenic 40.0%
TAACCAGTCTTTCACTCTAG+TGG - chr7_2:64377453-64377472 Msa1068960:CDS 40.0%
AATCCACTAGAGTGAAAGAC+TGG + chr7_2:64377459-64377478 None:intergenic 40.0%
AGGTGCAAAGGGAATGATAT+TGG - chr7_2:64377743-64377762 Msa1068960:CDS 40.0%
GGTGCAAAGGGAATGATATT+GGG - chr7_2:64377744-64377763 Msa1068960:CDS 40.0%
CCAACAGTAGACAAAACATG+AGG + chr7_2:64377810-64377829 None:intergenic 40.0%
! CCTCATGTTTTGTCTACTGT+TGG - chr7_2:64377807-64377826 Msa1068960:CDS 40.0%
! GTTTTTATACGAGAAGGCAG+TGG + chr7_2:64377855-64377874 None:intergenic 40.0%
GATGAGAATGAAGCCATAAC+TGG + chr7_2:64378108-64378127 None:intergenic 40.0%
ATGGCTTCATTCTCATCTAG+AGG - chr7_2:64378111-64378130 Msa1068960:intron 40.0%
TGGCTTCATTCTCATCTAGA+GGG - chr7_2:64378112-64378131 Msa1068960:intron 40.0%
CAATGTGGGACTTTCTAACT+CGG + chr7_2:64378223-64378242 None:intergenic 40.0%
GAGTCCAGCAGCTATTAAAT+CGG - chr7_2:64378650-64378669 Msa1068960:intron 40.0%
! ATAGCCGATTTAATAGCTGC+TGG + chr7_2:64378657-64378676 None:intergenic 40.0%
! ATATAGTTTGTGCGTGTGGT+GGG + chr7_2:64378707-64378726 None:intergenic 40.0%
! TATATAGTTTGTGCGTGTGG+TGG + chr7_2:64378708-64378727 None:intergenic 40.0%
TCGGAAGATGACAAAATTGG+TGG - chr7_2:64378868-64378887 Msa1068960:intron 40.0%
GATCCATTTGCTTATGGTTC+AGG - chr7_2:64379181-64379200 Msa1068960:intron 40.0%
TGTCCTGAACCATAAGCAAA+TGG + chr7_2:64379187-64379206 None:intergenic 40.0%
TATTCAACCCAACAGTGCAA+TGG - chr7_2:64379207-64379226 Msa1068960:intron 40.0%
GAGTTGCTTATTGTATCCAG+AGG + chr7_2:64379287-64379306 None:intergenic 40.0%
ACTCGTACAGTTACCAATGT+TGG - chr7_2:64379421-64379440 Msa1068960:CDS 40.0%
CTCGTACAGTTACCAATGTT+GGG - chr7_2:64379422-64379441 Msa1068960:CDS 40.0%
TTTGCTAAAGCTCAATTGCC+TGG - chr7_2:64379460-64379479 Msa1068960:intron 40.0%
CCAAATTGGTATTTCCTCCT+TGG + chr7_2:64379580-64379599 None:intergenic 40.0%
CCAAGGAGGAAATACCAATT+TGG - chr7_2:64379577-64379596 Msa1068960:CDS 40.0%
TAAGGAGTCCTGTTACTGTT+CGG - chr7_2:64379632-64379651 Msa1068960:CDS 40.0%
TGGCAAGGTTACAAAAAGAC+TGG + chr7_2:64377431-64377450 None:intergenic 40.0%
! ACTAGAGTGAAAGACTGGTT+AGG + chr7_2:64377454-64377473 None:intergenic 40.0%
TAACCAGTCTTTCACTCTAG+TGG - chr7_2:64377453-64377472 Msa1068960:CDS 40.0%
AATCCACTAGAGTGAAAGAC+TGG + chr7_2:64377459-64377478 None:intergenic 40.0%
AGGTGCAAAGGGAATGATAT+TGG - chr7_2:64377743-64377762 Msa1068960:CDS 40.0%
GGTGCAAAGGGAATGATATT+GGG - chr7_2:64377744-64377763 Msa1068960:CDS 40.0%
CCAACAGTAGACAAAACATG+AGG + chr7_2:64377810-64377829 None:intergenic 40.0%
! CCTCATGTTTTGTCTACTGT+TGG - chr7_2:64377807-64377826 Msa1068960:CDS 40.0%
! GTTTTTATACGAGAAGGCAG+TGG + chr7_2:64377855-64377874 None:intergenic 40.0%
GATGAGAATGAAGCCATAAC+TGG + chr7_2:64378108-64378127 None:intergenic 40.0%
ATGGCTTCATTCTCATCTAG+AGG - chr7_2:64378111-64378130 Msa1068960:intron 40.0%
TGGCTTCATTCTCATCTAGA+GGG - chr7_2:64378112-64378131 Msa1068960:intron 40.0%
CAATGTGGGACTTTCTAACT+CGG + chr7_2:64378223-64378242 None:intergenic 40.0%
GAGTCCAGCAGCTATTAAAT+CGG - chr7_2:64378650-64378669 Msa1068960:intron 40.0%
! ATAGCCGATTTAATAGCTGC+TGG + chr7_2:64378657-64378676 None:intergenic 40.0%
! ATATAGTTTGTGCGTGTGGT+GGG + chr7_2:64378707-64378726 None:intergenic 40.0%
! TATATAGTTTGTGCGTGTGG+TGG + chr7_2:64378708-64378727 None:intergenic 40.0%
TCGGAAGATGACAAAATTGG+TGG - chr7_2:64378868-64378887 Msa1068960:intron 40.0%
GATCCATTTGCTTATGGTTC+AGG - chr7_2:64379181-64379200 Msa1068960:intron 40.0%
TGTCCTGAACCATAAGCAAA+TGG + chr7_2:64379187-64379206 None:intergenic 40.0%
TATTCAACCCAACAGTGCAA+TGG - chr7_2:64379207-64379226 Msa1068960:intron 40.0%
GAGTTGCTTATTGTATCCAG+AGG + chr7_2:64379287-64379306 None:intergenic 40.0%
ACTCGTACAGTTACCAATGT+TGG - chr7_2:64379421-64379440 Msa1068960:CDS 40.0%
CTCGTACAGTTACCAATGTT+GGG - chr7_2:64379422-64379441 Msa1068960:CDS 40.0%
TTTGCTAAAGCTCAATTGCC+TGG - chr7_2:64379460-64379479 Msa1068960:intron 40.0%
CCAAATTGGTATTTCCTCCT+TGG + chr7_2:64379580-64379599 None:intergenic 40.0%
CCAAGGAGGAAATACCAATT+TGG - chr7_2:64379577-64379596 Msa1068960:CDS 40.0%
TAAGGAGTCCTGTTACTGTT+CGG - chr7_2:64379632-64379651 Msa1068960:CDS 40.0%
! AGAGTGAAAGACTGGTTAGG+TGG + chr7_2:64377451-64377470 None:intergenic 45.0%
! CGCATCTCGATTTGTCACAT+TGG + chr7_2:64377500-64377519 None:intergenic 45.0%
AAAATCAGTTGCAGAGGGTC+AGG - chr7_2:64377707-64377726 Msa1068960:CDS 45.0%
! AGCTTTATCTGCAGGTGCAA+AGG - chr7_2:64377731-64377750 Msa1068960:CDS 45.0%
GCTTTATCTGCAGGTGCAAA+GGG - chr7_2:64377732-64377751 Msa1068960:CDS 45.0%
AAGAAAGCCTGCTCCAGTTA+TGG - chr7_2:64378092-64378111 Msa1068960:intron 45.0%
AATGAAGCCATAACTGGAGC+AGG + chr7_2:64378102-64378121 None:intergenic 45.0%
CGAGTTAGAAAGTCCCACAT+TGG - chr7_2:64378221-64378240 Msa1068960:intron 45.0%
GAAAGTCCCACATTGGATGA+AGG - chr7_2:64378228-64378247 Msa1068960:intron 45.0%
TCCACTCCTTCATCCAATGT+GGG + chr7_2:64378237-64378256 None:intergenic 45.0%
ATCCACTCCTTCATCCAATG+TGG + chr7_2:64378238-64378257 None:intergenic 45.0%
TTACCAACAGACAATCGTCG+AGG - chr7_2:64378537-64378556 Msa1068960:CDS 45.0%
AAACCTCGACGATTGTCTGT+TGG + chr7_2:64378543-64378562 None:intergenic 45.0%
! CAGACAATCGTCGAGGTTTT+CGG - chr7_2:64378544-64378563 Msa1068960:CDS 45.0%
AACATGAGGGCAAGACATAG+AGG + chr7_2:64378589-64378608 None:intergenic 45.0%
ATAGCTGCTGGACTCCAATT+AGG + chr7_2:64378645-64378664 None:intergenic 45.0%
AAATCGGCTATCATGACCAC+TGG - chr7_2:64378666-64378685 Msa1068960:intron 45.0%
GGGTTGAGAGAATATACCAG+TGG + chr7_2:64378685-64378704 None:intergenic 45.0%
! TATAGTTTGTGCGTGTGGTG+GGG + chr7_2:64378706-64378725 None:intergenic 45.0%
!! TTTCCGAAAGCATCGCGTAT+CGG + chr7_2:64379151-64379170 None:intergenic 45.0%
CCATAAGCAAATGGATCTGC+TGG + chr7_2:64379178-64379197 None:intergenic 45.0%
CCAGCAGATCCATTTGCTTA+TGG - chr7_2:64379175-64379194 Msa1068960:intron 45.0%
AAGCAACAAGTGTGACACCA+AGG - chr7_2:64379560-64379579 Msa1068960:intron 45.0%
ACCAATTTGGAGAACTGCGA+TGG - chr7_2:64379590-64379609 Msa1068960:CDS 45.0%
TCCATCGCAGTTCTCCAAAT+TGG + chr7_2:64379594-64379613 None:intergenic 45.0%
! AGAGTGAAAGACTGGTTAGG+TGG + chr7_2:64377451-64377470 None:intergenic 45.0%
! CGCATCTCGATTTGTCACAT+TGG + chr7_2:64377500-64377519 None:intergenic 45.0%
AAAATCAGTTGCAGAGGGTC+AGG - chr7_2:64377707-64377726 Msa1068960:CDS 45.0%
! AGCTTTATCTGCAGGTGCAA+AGG - chr7_2:64377731-64377750 Msa1068960:CDS 45.0%
GCTTTATCTGCAGGTGCAAA+GGG - chr7_2:64377732-64377751 Msa1068960:CDS 45.0%
AAGAAAGCCTGCTCCAGTTA+TGG - chr7_2:64378092-64378111 Msa1068960:intron 45.0%
AATGAAGCCATAACTGGAGC+AGG + chr7_2:64378102-64378121 None:intergenic 45.0%
CGAGTTAGAAAGTCCCACAT+TGG - chr7_2:64378221-64378240 Msa1068960:intron 45.0%
GAAAGTCCCACATTGGATGA+AGG - chr7_2:64378228-64378247 Msa1068960:intron 45.0%
TCCACTCCTTCATCCAATGT+GGG + chr7_2:64378237-64378256 None:intergenic 45.0%
ATCCACTCCTTCATCCAATG+TGG + chr7_2:64378238-64378257 None:intergenic 45.0%
TTACCAACAGACAATCGTCG+AGG - chr7_2:64378537-64378556 Msa1068960:CDS 45.0%
AAACCTCGACGATTGTCTGT+TGG + chr7_2:64378543-64378562 None:intergenic 45.0%
! CAGACAATCGTCGAGGTTTT+CGG - chr7_2:64378544-64378563 Msa1068960:CDS 45.0%
AACATGAGGGCAAGACATAG+AGG + chr7_2:64378589-64378608 None:intergenic 45.0%
ATAGCTGCTGGACTCCAATT+AGG + chr7_2:64378645-64378664 None:intergenic 45.0%
AAATCGGCTATCATGACCAC+TGG - chr7_2:64378666-64378685 Msa1068960:intron 45.0%
GGGTTGAGAGAATATACCAG+TGG + chr7_2:64378685-64378704 None:intergenic 45.0%
! TATAGTTTGTGCGTGTGGTG+GGG + chr7_2:64378706-64378725 None:intergenic 45.0%
!! TTTCCGAAAGCATCGCGTAT+CGG + chr7_2:64379151-64379170 None:intergenic 45.0%
CCATAAGCAAATGGATCTGC+TGG + chr7_2:64379178-64379197 None:intergenic 45.0%
CCAGCAGATCCATTTGCTTA+TGG - chr7_2:64379175-64379194 Msa1068960:intron 45.0%
AAGCAACAAGTGTGACACCA+AGG - chr7_2:64379560-64379579 Msa1068960:intron 45.0%
ACCAATTTGGAGAACTGCGA+TGG - chr7_2:64379590-64379609 Msa1068960:CDS 45.0%
TCCATCGCAGTTCTCCAAAT+TGG + chr7_2:64379594-64379613 None:intergenic 45.0%
! GAAAGACTGGTTAGGTGGCA+AGG + chr7_2:64377446-64377465 None:intergenic 50.0%
ATAGTGGCATGTGCTCGAGA+AGG - chr7_2:64377678-64377697 Msa1068960:CDS 50.0%
TAGTGGCATGTGCTCGAGAA+GGG - chr7_2:64377679-64377698 Msa1068960:CDS 50.0%
! GGTCAGGAAGCTTTATCTGC+AGG - chr7_2:64377723-64377742 Msa1068960:CDS 50.0%
TTGTCTACTGTTGGCAAGCG+TGG - chr7_2:64377816-64377835 Msa1068960:CDS 50.0%
TGTCTACTGTTGGCAAGCGT+GGG - chr7_2:64377817-64377836 Msa1068960:CDS 50.0%
TCCCACATTGGATGAAGGAG+TGG - chr7_2:64378233-64378252 Msa1068960:intron 50.0%
GCTGCAAGTATGTTCACACC+AGG + chr7_2:64378489-64378508 None:intergenic 50.0%
ATGTCTTGCCCTCATGTTGC+TGG - chr7_2:64378591-64378610 Msa1068960:intron 50.0%
! ATAGTTTGTGCGTGTGGTGG+GGG + chr7_2:64378705-64378724 None:intergenic 50.0%
AAGCCGATACGCGATGCTTT+CGG - chr7_2:64379145-64379164 Msa1068960:intron 50.0%
CCAGGATCCATTGCACTGTT+GGG + chr7_2:64379217-64379236 None:intergenic 50.0%
TCCAGGATCCATTGCACTGT+TGG + chr7_2:64379218-64379237 None:intergenic 50.0%
! TGTACTTGGTGGCCCAACAT+TGG + chr7_2:64379437-64379456 None:intergenic 50.0%
CAACAAGTGTGACACCAAGG+AGG - chr7_2:64379563-64379582 Msa1068960:intron 50.0%
GGAGAACTGCGATGGACAAA+TGG - chr7_2:64379598-64379617 Msa1068960:CDS 50.0%
CATTTGCGCCGAACAGTAAC+AGG + chr7_2:64379643-64379662 None:intergenic 50.0%
GTTACTGTTCGGCGCAAATG+AGG - chr7_2:64379643-64379662 Msa1068960:CDS 50.0%
! GAAAGACTGGTTAGGTGGCA+AGG + chr7_2:64377446-64377465 None:intergenic 50.0%
ATAGTGGCATGTGCTCGAGA+AGG - chr7_2:64377678-64377697 Msa1068960:CDS 50.0%
TAGTGGCATGTGCTCGAGAA+GGG - chr7_2:64377679-64377698 Msa1068960:CDS 50.0%
! GGTCAGGAAGCTTTATCTGC+AGG - chr7_2:64377723-64377742 Msa1068960:CDS 50.0%
TTGTCTACTGTTGGCAAGCG+TGG - chr7_2:64377816-64377835 Msa1068960:CDS 50.0%
TGTCTACTGTTGGCAAGCGT+GGG - chr7_2:64377817-64377836 Msa1068960:CDS 50.0%
TCCCACATTGGATGAAGGAG+TGG - chr7_2:64378233-64378252 Msa1068960:intron 50.0%
GCTGCAAGTATGTTCACACC+AGG + chr7_2:64378489-64378508 None:intergenic 50.0%
ATGTCTTGCCCTCATGTTGC+TGG - chr7_2:64378591-64378610 Msa1068960:intron 50.0%
! ATAGTTTGTGCGTGTGGTGG+GGG + chr7_2:64378705-64378724 None:intergenic 50.0%
AAGCCGATACGCGATGCTTT+CGG - chr7_2:64379145-64379164 Msa1068960:intron 50.0%
CCAGGATCCATTGCACTGTT+GGG + chr7_2:64379217-64379236 None:intergenic 50.0%
TCCAGGATCCATTGCACTGT+TGG + chr7_2:64379218-64379237 None:intergenic 50.0%
! TGTACTTGGTGGCCCAACAT+TGG + chr7_2:64379437-64379456 None:intergenic 50.0%
CAACAAGTGTGACACCAAGG+AGG - chr7_2:64379563-64379582 Msa1068960:intron 50.0%
GGAGAACTGCGATGGACAAA+TGG - chr7_2:64379598-64379617 Msa1068960:CDS 50.0%
CATTTGCGCCGAACAGTAAC+AGG + chr7_2:64379643-64379662 None:intergenic 50.0%
ACACCAGGCGCAGTTACATC+AGG + chr7_2:64378474-64378493 None:intergenic 55.0%
CAGCAGTGCCAGCAACATGA+GGG + chr7_2:64378602-64378621 None:intergenic 55.0%
!! AGCATCGCGTATCGGCTTGT+TGG + chr7_2:64379143-64379162 None:intergenic 55.0%
CCCAACAGTGCAATGGATCC+TGG - chr7_2:64379214-64379233 Msa1068960:intron 55.0%
ACACCAGGCGCAGTTACATC+AGG + chr7_2:64378474-64378493 None:intergenic 55.0%
CAGCAGTGCCAGCAACATGA+GGG + chr7_2:64378602-64378621 None:intergenic 55.0%
!! AGCATCGCGTATCGGCTTGT+TGG + chr7_2:64379143-64379162 None:intergenic 55.0%
CCCAACAGTGCAATGGATCC+TGG - chr7_2:64379214-64379233 Msa1068960:intron 55.0%
CAGCCTGATGTAACTGCGCC+TGG - chr7_2:64378468-64378487 Msa1068960:CDS 60.0%
CCAGCAGTGCCAGCAACATG+AGG + chr7_2:64378603-64378622 None:intergenic 60.0%
CCTCATGTTGCTGGCACTGC+TGG - chr7_2:64378600-64378619 Msa1068960:intron 60.0%
CAGCCTGATGTAACTGCGCC+TGG - chr7_2:64378468-64378487 Msa1068960:CDS 60.0%
CCAGCAGTGCCAGCAACATG+AGG + chr7_2:64378603-64378622 None:intergenic 60.0%
CCTCATGTTGCTGGCACTGC+TGG - chr7_2:64378600-64378619 Msa1068960:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 64377424 64379663 64377424 ID=Msa1068960;Name=Msa1068960
chr7_2 mRNA 64377424 64379663 64377424 ID=Msa1068960-mRNA-1;Parent=Msa1068960;Name=Msa1068960-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.66|0|1|1|1|4|0|350
chr7_2 exon 64377424 64377965 64377424 ID=Msa1068960-mRNA-1:exon:13433;Parent=Msa1068960-mRNA-1
chr7_2 exon 64378400 64378579 64378400 ID=Msa1068960-mRNA-1:exon:13432;Parent=Msa1068960-mRNA-1
chr7_2 exon 64379223 64379458 64379223 ID=Msa1068960-mRNA-1:exon:13431;Parent=Msa1068960-mRNA-1
chr7_2 exon 64379569 64379663 64379569 ID=Msa1068960-mRNA-1:exon:13430;Parent=Msa1068960-mRNA-1
chr7_2 CDS 64379569 64379663 64379569 ID=Msa1068960-mRNA-1:cds;Parent=Msa1068960-mRNA-1
chr7_2 CDS 64379223 64379458 64379223 ID=Msa1068960-mRNA-1:cds;Parent=Msa1068960-mRNA-1
chr7_2 CDS 64378400 64378579 64378400 ID=Msa1068960-mRNA-1:cds;Parent=Msa1068960-mRNA-1
chr7_2 CDS 64377424 64377965 64377424 ID=Msa1068960-mRNA-1:cds;Parent=Msa1068960-mRNA-1
Gene Sequence

>Msa1068960

GGAGCCAGTCTTTTTGTAACCTTGCCACCTAACCAGTCTTTCACTCTAGTGGATTCTACTGATGTTAAATTTGCCAATGTGACAAATCGAGATGCTCGATTTTGTAGACCAAGAACACTTGATCCTTCAAAAGTGAAGGGTAAAATAGTGGCATGTGCTCGAGAAGGGAAAATAAAATCAGTTGCAGAGGGTCAGGAAGCTTTATCTGCAGGTGCAAAGGGAATGATATTGGGAAATCAACCAAAAGTTAATGGGAGAACACTTCTTTCTGAGCCTCATGTTTTGTCTACTGTTGGCAAGCGTGGGATAAAAATAATTCCACTGCCTTCTCCGTATTCATTATTTGCAAGTGCATCTAACTTACCAACAGACAATCGTCGAGGTTTTCGGTTCAATGTAATGCAAGGAACCTCTATGTCTTGCCCTCATGTTGCTGGCACTGCTGGACTTATCAAAACACTTCATCCTAATTGGAGTCCAGCAGCTATTAAATCGGCTATCATGACCACTGCAAGCACAACAGATAACACCAACAAGCCGATACGCGATGCTTTCGGAAAAACTCCAGCAGATCCATTTGCTTATGGTTCAGGACATATTCAACCCAACAGTGCAATGGATCCTGGACTTGTTTATGATCTAAGCATTAAGGATTACTTAAACTTCTTATGTGCCTCTGGATACAATAAGCAACTCATTTCAGCACTTAATTTCAACATGACATTTACTTGTTCAGGAACTCATAGCATAGATGACTTGAATTACCCTTCAATCACATTACCAAATCTTGGATTGAATGCTATTACTGTCACTCGTACAGTTACCAATGTTGGGCCACCAAGTACATATTTTGCTAAAGCTCAATTGCCTGGATATAAAATTGTTGTTGTACCAAGTTCCTTGAATTTCAAGAAAATAGGTGAAAAGAAGACATTTAAAGTTATTGTGCAAGCAACAAGTGTGACACCAAGGAGGAAATACCAATTTGGAGAACTGCGATGGACAAATGGAAAACACATTGTAAGGAGTCCTGTTACTGTTCGGCGCAAATGA
Protein sequence

>Msa1068960

GASLFVTLPPNQSFTLVDSTDVKFANVTNRDARFCRPRTLDPSKVKGKIVACAREGKIKSVAEGQEALSAGAKGMILGNQPKVNGRTLLSEPHVLSTVGKRGIKIIPLPSPYSLFASASNLPTDNRRGFRFNVMQGTSMSCPHVAGTAGLIKTLHPNWSPAAIKSAIMTTASTTDNTNKPIRDAFGKTPADPFAYGSGHIQPNSAMDPGLVYDLSIKDYLNFLCASGYNKQLISALNFNMTFTCSGTHSIDDLNYPSITLPNLGLNAITVTRTVTNVGPPSTYFAKAQLPGYKIVVVPSSLNFKKIGEKKTFKVIVQATSVTPRRKYQFGELRWTNGKHIVRSPVTVRRK*