AlfalfaGEDB | Msa1068960

M. sativa cultivar zhongmu-4 / Msa1068960

KEGG: -
GO: -
PFAM: PF02225.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1068960	GAU44644.1	72.727	407	54	2	1	350	186	592	0.0	585

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1068960	sp\|I1N462\|SBT1_SOYBN	59.135	416	104	6	1	350	374	789	1.01e-158	467

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1068960	A0A2Z6NJR6	72.727	407	54	2	1	350	186	592	0.0	585

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001800	Msa1068960	0.821383	4.157534e-53	-8.615850e-47
Msa0013270	Msa1068960	0.838365	3.003198e-57	-8.615850e-47
Msa0024650	Msa1068960	0.800854	1.185676e-48	-8.615850e-47
Msa0025570	Msa1068960	0.842029	3.317827e-58	-8.615850e-47
Msa0044310	Msa1068960	0.809802	1.580116e-50	-8.615850e-47
Msa0045810	Msa1068960	0.812566	3.974176e-51	-8.615850e-47
Msa0048380	Msa1068960	0.802806	4.710551e-49	-8.615850e-47
Msa0060410	Msa1068960	0.808869	2.505530e-50	-8.615850e-47
Msa0062190	Msa1068960	0.814041	1.885316e-51	-8.615850e-47
Msa0072180	Msa1068960	0.803021	4.252739e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1068960	MtrunA17_Chr7g0250391	75.182	411	41	3	1	350	375	785	0.0	583
Msa1068960	MtrunA17_Chr7g0250371	72.771	415	45	5	1	350	376	787	0.0	583
Msa1068960	MtrunA17_Chr7g0250411	78.161	261	53	2	91	350	529	786	2.17e-141	420
Msa1068960	MtrunA17_Chr7g0250411	67.890	109	35	0	1	109	376	484	2.05e-42	157
Msa1068960	MtrunA17_Chr7g0250441	78.927	261	51	2	91	350	28	285	3.65e-141	402
Msa1068960	MtrunA17_Chr7g0250331	78.244	262	52	3	91	350	551	809	4.28e-139	414
Msa1068960	MtrunA17_Chr7g0250331	65.217	115	23	2	1	98	380	494	1.36e-37	143
Msa1068960	MtrunA17_Chr7g0250481	78.313	249	51	1	102	350	555	800	2.70e-135	404
Msa1068960	MtrunA17_Chr7g0250481	75.510	98	23	1	1	98	375	471	5.38e-40	150
Msa1068960	MtrunA17_Chr5g0439271	61.134	247	89	5	102	347	361	601	3.42e-94	292

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1068960	AT2G04160.1	41.278	407	175	10	1	348	370	771	2.25e-84	271
Msa1068960	AT5G59810.1	42.118	406	170	12	1	348	377	775	3.13e-84	271
Msa1068960	AT5G67360.1	39.005	382	169	10	25	347	378	754	1.68e-70	234
Msa1068960	AT2G05920.1	37.166	374	172	9	32	345	377	747	2.49e-63	215
Msa1068960	AT5G45650.2	36.272	397	177	13	16	347	403	788	2.45e-61	210
Msa1068960	AT5G45650.1	36.272	397	177	13	16	347	403	788	2.45e-61	210
Msa1068960	AT5G51750.1	35.749	414	190	15	1	347	370	774	3.38e-57	198
Msa1068960	AT4G34980.1	36.198	384	173	15	32	347	379	758	4.70e-54	189
Msa1068960	AT4G26330.2	44.589	231	118	6	125	347	493	721	1.31e-52	185
Msa1068960	AT4G26330.1	44.589	231	118	6	125	347	507	735	1.66e-52	185

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Find 77 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAAGGGTAAAATAG+TGG	0.497193	7_2:-64379403	Msa1068960:CDS
AAAATAAAATCAGTTGCAGA+GGG	0.623854	7_2:-64379363	Msa1068960:CDS
AAAATCAGTTGCAGAGGGTC+AGG	0.427586	7_2:-64379358	Msa1068960:CDS
AAACCTCGACGATTGTCTGT+TGG	0.635715	7_2:+64378525	None:intergenic
AAATCGGCTATCATGACCAC+TGG	0.587876	7_2:-64378399	Msa1068960:intron
AACATGACATTTACTTGTTC+AGG	0.339929	7_2:-64377740	Msa1068960:CDS
AACATGAGGGCAAGACATAG+AGG	0.602418	7_2:+64378479	None:intergenic
AAGCAACAAGTGTGACACCA+AGG	0.681649	7_2:-64377505	Msa1068960:CDS
AAGCCGATACGCGATGCTTT+CGG	0.359804	7_2:-64377920	Msa1068960:CDS
AATCCACTAGAGTGAAAGAC+TGG	0.563936	7_2:+64379609	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCTTTACATCAGTAGT+AGG	-	chr7_2:64377534-64377553	Msa1068960:CDS	30.0%
AAAAGTGAAGGGTAAAATAG+TGG	-	chr7_2:64377662-64377681	Msa1068960:CDS	30.0%
GAAAATAAAATCAGTTGCAG+AGG	-	chr7_2:64377701-64377720	Msa1068960:CDS	30.0%
GGAAATCAACCAAAAGTTAA+TGG	-	chr7_2:64377765-64377784	Msa1068960:CDS	30.0%
AGTTCAACCTTATATACTCA+AGG	-	chr7_2:64378143-64378162	Msa1068960:intron	30.0%
AACAACAACACAAGTGAAAT+TGG	+	chr7_2:64378330-64378349	None:intergenic	30.0%
TCAAAACACTTCATCCTAAT+TGG	-	chr7_2:64378628-64378647	Msa1068960:intron	30.0%
AACATGACATTTACTTGTTC+AGG	-	chr7_2:64379325-64379344	Msa1068960:CDS	30.0%
TCAATCACATTACCAAATCT+TGG	-	chr7_2:64379379-64379398	Msa1068960:CDS	30.0%
ATAGCATTCAATCCAAGATT+TGG	+	chr7_2:64379394-64379413	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	64377424	64379663	64377424	ID=Msa1068960;Name=Msa1068960
chr7_2	mRNA	64377424	64379663	64377424	ID=Msa1068960-mRNA-1;Parent=Msa1068960;Name=Msa1068960-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0.66\|0\|1\|1\|1\|4\|0\|350
chr7_2	exon	64377424	64377965	64377424	ID=Msa1068960-mRNA-1:exon:13433;Parent=Msa1068960-mRNA-1
chr7_2	exon	64378400	64378579	64378400	ID=Msa1068960-mRNA-1:exon:13432;Parent=Msa1068960-mRNA-1
chr7_2	exon	64379223	64379458	64379223	ID=Msa1068960-mRNA-1:exon:13431;Parent=Msa1068960-mRNA-1
chr7_2	exon	64379569	64379663	64379569	ID=Msa1068960-mRNA-1:exon:13430;Parent=Msa1068960-mRNA-1
chr7_2	CDS	64379569	64379663	64379569	ID=Msa1068960-mRNA-1:cds;Parent=Msa1068960-mRNA-1
chr7_2	CDS	64379223	64379458	64379223	ID=Msa1068960-mRNA-1:cds;Parent=Msa1068960-mRNA-1
chr7_2	CDS	64378400	64378579	64378400	ID=Msa1068960-mRNA-1:cds;Parent=Msa1068960-mRNA-1
chr7_2	CDS	64377424	64377965	64377424	ID=Msa1068960-mRNA-1:cds;Parent=Msa1068960-mRNA-1

Gene Sequence

>Msa1068960

GGAGCCAGTCTTTTTGTAACCTTGCCACCTAACCAGTCTTTCACTCTAGTGGATTCTACTGATGTTAAATTTGCCAATGTGACAAATCGAGATGCTCGATTTTGTAGACCAAGAACACTTGATCCTTCAAAAGTGAAGGGTAAAATAGTGGCATGTGCTCGAGAAGGGAAAATAAAATCAGTTGCAGAGGGTCAGGAAGCTTTATCTGCAGGTGCAAAGGGAATGATATTGGGAAATCAACCAAAAGTTAATGGGAGAACACTTCTTTCTGAGCCTCATGTTTTGTCTACTGTTGGCAAGCGTGGGATAAAAATAATTCCACTGCCTTCTCCGTATTCATTATTTGCAAGTGCATCTAACTTACCAACAGACAATCGTCGAGGTTTTCGGTTCAATGTAATGCAAGGAACCTCTATGTCTTGCCCTCATGTTGCTGGCACTGCTGGACTTATCAAAACACTTCATCCTAATTGGAGTCCAGCAGCTATTAAATCGGCTATCATGACCACTGCAAGCACAACAGATAACACCAACAAGCCGATACGCGATGCTTTCGGAAAAACTCCAGCAGATCCATTTGCTTATGGTTCAGGACATATTCAACCCAACAGTGCAATGGATCCTGGACTTGTTTATGATCTAAGCATTAAGGATTACTTAAACTTCTTATGTGCCTCTGGATACAATAAGCAACTCATTTCAGCACTTAATTTCAACATGACATTTACTTGTTCAGGAACTCATAGCATAGATGACTTGAATTACCCTTCAATCACATTACCAAATCTTGGATTGAATGCTATTACTGTCACTCGTACAGTTACCAATGTTGGGCCACCAAGTACATATTTTGCTAAAGCTCAATTGCCTGGATATAAAATTGTTGTTGTACCAAGTTCCTTGAATTTCAAGAAAATAGGTGAAAAGAAGACATTTAAAGTTATTGTGCAAGCAACAAGTGTGACACCAAGGAGGAAATACCAATTTGGAGAACTGCGATGGACAAATGGAAAACACATTGTAAGGAGTCCTGTTACTGTTCGGCGCAAATGA

Protein sequence

>Msa1068960

GASLFVTLPPNQSFTLVDSTDVKFANVTNRDARFCRPRTLDPSKVKGKIVACAREGKIKSVAEGQEALSAGAKGMILGNQPKVNGRTLLSEPHVLSTVGKRGIKIIPLPSPYSLFASASNLPTDNRRGFRFNVMQGTSMSCPHVAGTAGLIKTLHPNWSPAAIKSAIMTTASTTDNTNKPIRDAFGKTPADPFAYGSGHIQPNSAMDPGLVYDLSIKDYLNFLCASGYNKQLISALNFNMTFTCSGTHSIDDLNYPSITLPNLGLNAITVTRTVTNVGPPSTYFAKAQLPGYKIVVVPSSLNFKKIGEKKTFKVIVQATSVTPRRKYQFGELRWTNGKHIVRSPVTVRRK*