AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1437780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437780 MtrunA17_Chr8g0382281 97.460 315 8 0 1 315 1 315 0.0 625
Msa1437780 MtrunA17_Chr5g0425971 66.349 315 106 0 1 315 1 315 2.87e-155 437
Msa1437780 MtrunA17_Chr8g0352611 51.429 315 151 2 1 315 1 313 5.11e-105 309
Msa1437780 MtrunA17_Chr3g0083921 50.476 315 155 1 1 315 1 314 1.15e-103 306
Msa1437780 MtrunA17_Chr3g0083901 49.524 315 157 2 1 314 1 314 9.98e-103 303
Msa1437780 MtrunA17_Chr8g0352621 51.118 313 149 2 1 312 1 310 1.43e-102 303
Msa1437780 MtrunA17_Chr8g0352591 48.397 312 149 2 1 312 1 300 7.79e-93 278
Msa1437780 MtrunA17_Chr2g0293441 43.234 303 172 0 12 314 11 313 1.69e-89 270
Msa1437780 MtrunA17_Chr8g0352571 42.857 315 177 1 1 312 1 315 4.25e-82 251
Msa1437780 MtrunA17_Chr8g0393281 37.855 317 193 3 1 315 1 315 1.46e-72 226
Msa1437780 MtrunA17_Chr1g0162071 36.076 316 198 3 1 314 1 314 1.27e-66 211
Msa1437780 MtrunA17_Chr6g0479411 35.783 313 199 2 1 312 28 339 5.00e-65 208
Msa1437780 MtrunA17_Chr6g0479421 37.580 314 192 3 1 312 1 312 1.11e-64 206
Msa1437780 MtrunA17_Chr1g0210981 36.624 314 195 3 1 312 1 312 1.81e-62 201
Msa1437780 MtrunA17_Chr6g0479391 36.943 314 194 3 1 312 1 312 3.24e-56 184
Msa1437780 MtrunA17_Chr8g0352581 36.792 318 172 8 14 312 4 311 3.59e-50 169
Msa1437780 MtrunA17_Chr6g0461141 26.277 274 194 5 45 310 34 307 4.93e-23 97.1
Msa1437780 MtrunA17_Chr3g0084011 51.351 74 35 1 1 74 1 73 1.47e-17 77.0
Msa1437780 MtrunA17_Chr3g0084021 56.061 66 29 0 145 210 5 70 1.72e-17 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437780 AT5G65020.1 71.656 314 88 1 1 313 1 314 4.40e-170 474
Msa1437780 AT5G10230.1 71.019 314 91 0 1 314 1 314 1.87e-167 468
Msa1437780 AT5G10220.1 69.304 316 95 1 1 314 1 316 3.07e-162 455
Msa1437780 AT5G65020.2 72.664 289 78 1 26 313 11 299 2.59e-157 442
Msa1437780 AT1G35720.1 66.772 316 104 1 1 315 1 316 8.54e-155 436
Msa1437780 AT5G12380.1 51.118 313 152 1 1 313 1 312 1.44e-110 323
Msa1437780 AT2G38760.1 42.138 318 178 2 1 312 1 318 1.63e-82 252
Msa1437780 AT1G68090.1 37.380 313 195 1 1 312 1 313 8.44e-64 204
Msa1437780 AT1G68090.2 37.349 249 151 3 1 244 1 249 2.08e-43 149
Msa1437780 AT2G38750.2 35.526 304 171 6 26 311 2 298 2.87e-43 150
Msa1437780 AT2G38750.1 35.505 307 173 6 23 311 16 315 4.08e-43 151

Find 88 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTGAGGGCAGCAATTA+AGG 0.189714 tig0028361:+30342 Msa1437780:CDS
AATCACTATAACAATGAGTT+TGG 0.243154 tig0028361:+29983 Msa1437780:CDS
ACCCCATAATTCATGGAAAA+AGG 0.279086 tig0028361:+30972 Msa1437780:three_prime_UTR
AATATAATCGATCCGTAATA+AGG 0.286006 tig0028361:-30842 None:intergenic
TCATATTTCTCTCCTTATTA+CGG 0.324655 tig0028361:+30830 Msa1437780:three_prime_UTR
TCGCCATTGTGTTTGTGTTC+AGG 0.345562 tig0028361:-28291 None:intergenic
ATCTCCACTTGAACTTCTTA+AGG 0.350377 tig0028361:+29356 Msa1437780:CDS
TCATGAGAAGATTGCGGATA+AGG 0.357945 tig0028361:+29892 Msa1437780:CDS
GATGTTGCCTATCATACTTC+TGG 0.369007 tig0028361:+29423 Msa1437780:CDS
GTAGTCATGGAGTGGCTGTT+TGG 0.374106 tig0028361:+30618 Msa1437780:three_prime_UTR
GCAATTGACAAAGACACTTC+TGG 0.392622 tig0028361:+30532 Msa1437780:CDS
TACGCATACCCCATAATTCA+TGG 0.395314 tig0028361:+30965 Msa1437780:three_prime_UTR
AGTTCCTCAAAATATTTCTC+AGG 0.401647 tig0028361:-30376 None:intergenic
TTATTGAGGGCAGCAATTAA+GGG 0.414248 tig0028361:+30343 Msa1437780:CDS
ATCACTATAACAATGAGTTT+GGG 0.415323 tig0028361:+29984 Msa1437780:CDS
TCTTGATAGTATACAGAATT+CGG 0.419227 tig0028361:+30686 Msa1437780:three_prime_UTR
AGCTGTTTCATTATTTAAGA+AGG 0.431198 tig0028361:-30806 None:intergenic
GAGGAACACTGTTTCTTCTC+TGG 0.435446 tig0028361:-30501 None:intergenic
GCAGGATTTGGAAACTGATT+CGG 0.447953 tig0028361:+30303 Msa1437780:intron
AGTTTATTAAACTTATCTCC+TGG 0.453050 tig0028361:+31015 Msa1437780:three_prime_UTR
TGTGGGCATACACCGTTATG+AGG 0.458266 tig0028361:+29823 Msa1437780:CDS
TTGTTGTTACAATCCTGATC+AGG 0.458748 tig0028361:-29931 None:intergenic
ACAGGATGGGGAACGAATGA+AGG 0.469249 tig0028361:+28884 Msa1437780:intron
GATAGGCAACATCTTCTTCA+AGG 0.470858 tig0028361:-29413 None:intergenic
ACAATCATGATGACCTGATC+AGG 0.471756 tig0028361:+29918 Msa1437780:CDS
CAAAATCACGCTGATGATGA+AGG 0.476971 tig0028361:-30654 None:intergenic
AACAGCCACTCCATGACTAC+TGG 0.479223 tig0028361:-30615 None:intergenic
ATGAATATCTGAAATTATTG+AGG 0.486467 tig0028361:+30329 Msa1437780:CDS
AGCTGTGCTGCTGTGGACAT+TGG 0.493673 tig0028361:+29242 Msa1437780:CDS
GAAAATTCTCCTTGCACTGA+TGG 0.493991 tig0028361:+30564 Msa1437780:CDS
GAGAAGAAACAGTGTTCCTC+TGG 0.495918 tig0028361:+30504 Msa1437780:CDS
TGAATACTGAAAGCCAATGT+TGG 0.496726 tig0028361:-28242 None:intergenic
GAGCTGCATTTCTATGAGCC+AGG 0.520838 tig0028361:-28922 None:intergenic
CTTTAAGAAGATCTTCTCCA+TGG 0.522934 tig0028361:-28979 None:intergenic
GAATACTGAAAGCCAATGTT+GGG 0.523577 tig0028361:-28241 None:intergenic
TGAATATCTGAAATTATTGA+GGG 0.538168 tig0028361:+30330 Msa1437780:CDS
TAGGCTGGCTATAAACAAGA+TGG 0.541067 tig0028361:+30402 Msa1437780:CDS
AGCCAATGTTGGGAGGGAGC+AGG 0.542457 tig0028361:-28231 None:intergenic
AAAATTCTCCTTGCACTGAT+GGG 0.542533 tig0028361:+30565 Msa1437780:CDS
AACAGAAAGCTGTGCTGCTG+TGG 0.544066 tig0028361:+29235 Msa1437780:intron
AATTGTTCACTGTCTTCTGA+TGG 0.548405 tig0028361:-28343 None:intergenic
AAGTTCAAGTGGAGATCTTG+TGG 0.549416 tig0028361:-29349 None:intergenic
GATGGAGAAGGAACGTGAGA+GGG 0.549677 tig0028361:-28325 None:intergenic
ACTTGAAACAAACACTCCCT+TGG 0.550478 tig0028361:-30995 None:intergenic
CTTAATCTGTCCAGTAGTCA+TGG 0.553997 tig0028361:+30605 Msa1437780:three_prime_UTR
TCTTGTTTATAGCCAGCCTA+AGG 0.557307 tig0028361:-30399 None:intergenic
AGGCTTGATAATATCGATCC+TGG 0.557589 tig0028361:+28904 Msa1437780:CDS
ATGAATTATGGGGTATGCGT+AGG 0.559037 tig0028361:-30963 None:intergenic
AACCTGCTCCCTCCCAACAT+TGG 0.565034 tig0028361:+28229 Msa1437780:five_prime_UTR
GTTCCTCAAAATATTTCTCA+GGG 0.565806 tig0028361:-30375 None:intergenic
GCTGCTGTGGACATTGGATC+CGG 0.567043 tig0028361:+29248 Msa1437780:CDS
GGGTCTGCGTGTAAGTTTCG+CGG 0.567457 tig0028361:-28958 None:intergenic
GATGTCACCAGAAGTATGAT+AGG 0.569427 tig0028361:-29430 None:intergenic
CAGAATTCGGTGACTTGCTG+TGG 0.582038 tig0028361:+30699 Msa1437780:three_prime_UTR
GGTTGATTTGCAGCGAATTG+CGG 0.585356 tig0028361:+30471 Msa1437780:CDS
AAAATCACGCTGATGATGAA+GGG 0.586986 tig0028361:-30653 None:intergenic
AAGTGTCTTTGTCAATTGCA+CGG 0.589714 tig0028361:-30528 None:intergenic
TACTGAAAGCCAATGTTGGG+AGG 0.589846 tig0028361:-28238 None:intergenic
GTGATATGTATGAACTATTG+TGG 0.591619 tig0028361:+30733 Msa1437780:three_prime_UTR
TTTAAGAAGATCTTCTCCAT+GGG 0.594102 tig0028361:-28978 None:intergenic
TTGTCAATTGCACGGTCCAG+AGG 0.595483 tig0028361:-30520 None:intergenic
TCACCTCATCTCCCTCATAA+CGG 0.595788 tig0028361:-29835 None:intergenic
TGATGGAGAAGGAACGTGAG+AGG 0.596195 tig0028361:-28326 None:intergenic
ATAGGCAACATCTTCTTCAA+GGG 0.598603 tig0028361:-29412 None:intergenic
TGATTTGCAGCGAATTGCGG+AGG 0.598869 tig0028361:+30474 Msa1437780:CDS
TGAAAATGCTCTTACTAGAG+TGG 0.606160 tig0028361:+30432 Msa1437780:CDS
CATCATGTCCCATCAGTGCA+AGG 0.606991 tig0028361:-30573 None:intergenic
ATTGCTTCATGAGAAGATTG+CGG 0.611914 tig0028361:+29886 Msa1437780:CDS
GTGGGCATACACCGTTATGA+GGG 0.616438 tig0028361:+29824 Msa1437780:CDS
GAAACTTACACGCAGACCCA+TGG 0.623172 tig0028361:+28962 Msa1437780:CDS
AGGCTGGCTATAAACAAGAT+GGG 0.624496 tig0028361:+30403 Msa1437780:CDS
ACTGAAAGCCAATGTTGGGA+GGG 0.625318 tig0028361:-28237 None:intergenic
AGATGAGGTGAACATGACAT+TGG 0.629033 tig0028361:+29847 Msa1437780:CDS
TAACGGTGTATGCCCACAAG+AGG 0.631350 tig0028361:-29818 None:intergenic
CTCAAAATATTTCTCAGGGT+AGG 0.640542 tig0028361:-30371 None:intergenic
TCACTGTCTTCTGATGGAGA+AGG 0.641986 tig0028361:-28337 None:intergenic
ATGGAGAAGGAACGTGAGAG+GGG 0.642321 tig0028361:-28324 None:intergenic
TTTGCCTTAAGAAGTTCAAG+TGG 0.642700 tig0028361:-29360 None:intergenic
ACACCGTTATGAGGGAGATG+AGG 0.647772 tig0028361:+29832 Msa1437780:CDS
TCTGTCCAGTAGTCATGGAG+TGG 0.655004 tig0028361:+30610 Msa1437780:three_prime_UTR
TTCAAACAATTCGATCATCG+TGG 0.667000 tig0028361:+29317 Msa1437780:CDS
TACTTCTGGTGACATCCGCA+AGG 0.668178 tig0028361:+29437 Msa1437780:CDS
AGTGGTGACAACTAGAGCTG+AGG 0.671413 tig0028361:+30450 Msa1437780:CDS
GTTTGGGAATGTAATAGACA+AGG 0.682197 tig0028361:+30000 Msa1437780:CDS
ATCGATCTGTGTGTATAATG+TGG 0.684795 tig0028361:-28268 None:intergenic
TGATCAGGATTGTAACAACA+AGG 0.686508 tig0028361:+29933 Msa1437780:CDS
GAAGACAGTGAACAATTGCG+CGG 0.707759 tig0028361:+28349 Msa1437780:CDS
GATCCTGAACACAAACACAA+TGG 0.715353 tig0028361:+28288 Msa1437780:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTTAAAATTTTGATATA+TGG + tig0028361:29036-29055 Msa1437780:intron 10.0%
!!! TAAATAATATGTTTTGAATA+TGG + tig0028361:30759-30778 Msa1437780:three_prime_UTR 10.0%
!!! ATTAACTTCCTTTTAATTAA+AGG + tig0028361:30182-30201 Msa1437780:intron 15.0%
!!! TTAACTTCCTTTTAATTAAA+GGG + tig0028361:30183-30202 Msa1437780:intron 15.0%
!! TGAAATAAAAGTCAAAGAAA+TGG - tig0028361:28402-28421 None:intergenic 20.0%
!! CTAATATCTTAATTAGATCA+TGG + tig0028361:28500-28519 Msa1437780:intron 20.0%
!!! ATATTTCTAGTTAATGAATG+TGG + tig0028361:28612-28631 Msa1437780:intron 20.0%
!! CAAGAAATTAGTAAGTTTAA+GGG - tig0028361:29467-29486 None:intergenic 20.0%
!! TCAAGAAATTAGTAAGTTTA+AGG - tig0028361:29468-29487 None:intergenic 20.0%
!!! TGTAAATCTTTTCAACTTTA+AGG + tig0028361:29587-29606 Msa1437780:intron 20.0%
!! AAAGGTTAAATACATATAAC+TGG - tig0028361:29706-29725 None:intergenic 20.0%
!! ACAGAAATAAGAATCATAAA+TGG - tig0028361:30040-30059 None:intergenic 20.0%
!! ATATTTCTTGAAGAGAAAAA+TGG - tig0028361:30128-30147 None:intergenic 20.0%
!! CTTCATCAATAATATGATTA+TGG - tig0028361:30160-30179 None:intergenic 20.0%
!! CTATAATCCCTTTAATTAAA+AGG - tig0028361:30193-30212 None:intergenic 20.0%
!!! ATGAATATCTGAAATTATTG+AGG + tig0028361:30329-30348 Msa1437780:CDS 20.0%
!!! TGAATATCTGAAATTATTGA+GGG + tig0028361:30330-30349 Msa1437780:CDS 20.0%
!! TATTTCCAAAAAATTATTCC+AGG - tig0028361:31036-31055 None:intergenic 20.0%
! TAAAAGTCAAAGAAATGGAT+CGG - tig0028361:28397-28416 None:intergenic 25.0%
!! TTTTTCCTTTGTGTTTTTCA+TGG + tig0028361:28803-28822 Msa1437780:intron 25.0%
! TCAACAATTGTTAGTGAAAA+TGG - tig0028361:29110-29129 None:intergenic 25.0%
! TATATGAATAACCTTGACTA+AGG + tig0028361:29164-29183 Msa1437780:intron 25.0%
!!! CAAGGTATTTTCATGTAATA+AGG + tig0028361:29195-29214 Msa1437780:intron 25.0%
! AAAATCTTCCAAAATTTACG+TGG + tig0028361:29564-29583 Msa1437780:intron 25.0%
!! ATTCTTTTGACATAAATCTG+AGG - tig0028361:29638-29657 None:intergenic 25.0%
! GTTAAATACATATAACTGGT+TGG - tig0028361:29702-29721 None:intergenic 25.0%
! AACAAAATTTCATCAGACAA+CGG - tig0028361:29771-29790 None:intergenic 25.0%
! AATCACTATAACAATGAGTT+TGG + tig0028361:29983-30002 Msa1437780:CDS 25.0%
! ATCACTATAACAATGAGTTT+GGG + tig0028361:29984-30003 Msa1437780:CDS 25.0%
! TCAATAATATGATTATGGCT+GGG - tig0028361:30155-30174 None:intergenic 25.0%
! ATCAATAATATGATTATGGC+TGG - tig0028361:30156-30175 None:intergenic 25.0%
! TCAATTTCTTCTGTAGAAAA+AGG + tig0028361:30227-30246 Msa1437780:intron 25.0%
!!! AGGATAACCTTTTTTTTACT+AGG + tig0028361:30247-30266 Msa1437780:intron 25.0%
!!! GGATAACCTTTTTTTTACTA+GGG + tig0028361:30248-30267 Msa1437780:intron 25.0%
! TACAAACCCTAGTAAAAAAA+AGG - tig0028361:30257-30276 None:intergenic 25.0%
!! TCTTGATAGTATACAGAATT+CGG + tig0028361:30686-30705 Msa1437780:three_prime_UTR 25.0%
!! AGCTGTTTCATTATTTAAGA+AGG - tig0028361:30809-30828 None:intergenic 25.0%
! TCATATTTCTCTCCTTATTA+CGG + tig0028361:30830-30849 Msa1437780:three_prime_UTR 25.0%
! AATATAATCGATCCGTAATA+AGG - tig0028361:30845-30864 None:intergenic 25.0%
! TTTCATTATTTAAACTCCCT+TGG - tig0028361:30901-30920 None:intergenic 25.0%
! TCATATTTCTCTCCTTATTA+CGG + tig0028361:30830-30849 Msa1437780:three_prime_UTR 25.0%
! AATATAATCGATCCGTAATA+AGG - tig0028361:30845-30864 None:intergenic 25.0%
! AGTTTATTAAACTTATCTCC+TGG + tig0028361:31015-31034 Msa1437780:three_prime_UTR 25.0%
!!! TATCTCCTGGAATAATTTTT+TGG + tig0028361:31028-31047 Msa1437780:three_prime_UTR 25.0%
AATAAGCAGTGCTCAAATAA+GGG + tig0028361:28773-28792 Msa1437780:intron 30.0%
AAACAACAATATGAATGGAC+AGG - tig0028361:28849-28868 None:intergenic 30.0%
!! GTCCATTCATATTGTTGTTT+CGG + tig0028361:28849-28868 Msa1437780:intron 30.0%
!! TTTCGGTGACATATTTTTAC+AGG + tig0028361:28866-28885 Msa1437780:intron 30.0%
!! GTGACATATTTTTACAGGAT+GGG + tig0028361:28871-28890 Msa1437780:intron 30.0%
!! TGACATATTTTTACAGGATG+GGG + tig0028361:28872-28891 Msa1437780:intron 30.0%
TTTAAGAAGATCTTCTCCAT+GGG - tig0028361:28981-29000 None:intergenic 30.0%
!! AGAACTTTCAAGTGATTTTG+AGG + tig0028361:29012-29031 Msa1437780:CDS 30.0%
!!! CAACATTTTAGTTGCTTGAT+TGG - tig0028361:29295-29314 None:intergenic 30.0%
! GATTTACACCACGTAAATTT+TGG - tig0028361:29575-29594 None:intergenic 30.0%
GGCATTCTTCTACTAAATAA+AGG - tig0028361:29617-29636 None:intergenic 30.0%
GCATAAGCATAAACATGAAA+AGG - tig0028361:29724-29743 None:intergenic 30.0%
ACAAAATTTCATCAGACAAC+GGG - tig0028361:29770-29789 None:intergenic 30.0%
! TGATTCTTCTCAAAAGCTTT+TGG + tig0028361:29793-29812 Msa1437780:intron 30.0%
! TAGACAAGGTATGAATGTTT+TGG + tig0028361:30014-30033 Msa1437780:intron 30.0%
GTTCCTCAAAATATTTCTCA+GGG - tig0028361:30378-30397 None:intergenic 30.0%
AGTTCCTCAAAATATTTCTC+AGG - tig0028361:30379-30398 None:intergenic 30.0%
!! AATATTTTGAGGAACTCCTT+AGG + tig0028361:30383-30402 Msa1437780:CDS 30.0%
!!! TCTAGTAAGAGCATTTTCAT+CGG - tig0028361:30431-30450 None:intergenic 30.0%
GTGATATGTATGAACTATTG+TGG + tig0028361:30733-30752 Msa1437780:three_prime_UTR 30.0%
GAATACTGAAAGCCAATGTT+GGG - tig0028361:28244-28263 None:intergenic 35.0%
TGAATACTGAAAGCCAATGT+TGG - tig0028361:28245-28264 None:intergenic 35.0%
ATCGATCTGTGTGTATAATG+TGG - tig0028361:28271-28290 None:intergenic 35.0%
AATTGTTCACTGTCTTCTGA+TGG - tig0028361:28346-28365 None:intergenic 35.0%
TTTGGACTACATGAAGAGAT+CGG - tig0028361:28691-28710 None:intergenic 35.0%
GATTCATCGTGATCATGATT+TGG - tig0028361:28709-28728 None:intergenic 35.0%
GAATAAGCAGTGCTCAAATA+AGG + tig0028361:28772-28791 Msa1437780:intron 35.0%
TCATGCCATGAAAAACACAA+AGG - tig0028361:28811-28830 None:intergenic 35.0%
CACCGAAACAACAATATGAA+TGG - tig0028361:28854-28873 None:intergenic 35.0%
!! GGTGACATATTTTTACAGGA+TGG + tig0028361:28870-28889 Msa1437780:intron 35.0%
! CTTTAAGAAGATCTTCTCCA+TGG - tig0028361:28982-29001 None:intergenic 35.0%
TTGACATGAAACCTTAGTCA+AGG - tig0028361:29178-29197 None:intergenic 35.0%
TTGACTAAGGTTTCATGTCA+AGG + tig0028361:29177-29196 Msa1437780:intron 35.0%
TTCAAACAATTCGATCATCG+TGG + tig0028361:29317-29336 Msa1437780:CDS 35.0%
ATCTCCACTTGAACTTCTTA+AGG + tig0028361:29356-29375 Msa1437780:CDS 35.0%
TTTGCCTTAAGAAGTTCAAG+TGG - tig0028361:29363-29382 None:intergenic 35.0%
!! CTTCAAGGGACTTTTTGAAA+CGG - tig0028361:29401-29420 None:intergenic 35.0%
ATAGGCAACATCTTCTTCAA+GGG - tig0028361:29415-29434 None:intergenic 35.0%
AAGTTTAAGGGTTTACCTTG+CGG - tig0028361:29455-29474 None:intergenic 35.0%
TTCCAAAAATACACCCATCT+TGG + tig0028361:29665-29684 Msa1437780:intron 35.0%
AAAAATACACCCATCTTGGT+GGG + tig0028361:29669-29688 Msa1437780:intron 35.0%
AAAAACGTCAGATCAAGACA+TGG - tig0028361:29746-29765 None:intergenic 35.0%
CAAAATTTCATCAGACAACG+GGG - tig0028361:29769-29788 None:intergenic 35.0%
ATTGCTTCATGAGAAGATTG+CGG + tig0028361:29886-29905 Msa1437780:CDS 35.0%
! TTGTTGTTACAATCCTGATC+AGG - tig0028361:29934-29953 None:intergenic 35.0%
TGATCAGGATTGTAACAACA+AGG + tig0028361:29933-29952 Msa1437780:CDS 35.0%
GTTTGGGAATGTAATAGACA+AGG + tig0028361:30000-30019 Msa1437780:CDS 35.0%
ATTATTGAGGGCAGCAATTA+AGG + tig0028361:30342-30361 Msa1437780:CDS 35.0%
TTATTGAGGGCAGCAATTAA+GGG + tig0028361:30343-30362 Msa1437780:CDS 35.0%
CTCAAAATATTTCTCAGGGT+AGG - tig0028361:30374-30393 None:intergenic 35.0%
! CTACCCTGAGAAATATTTTG+AGG + tig0028361:30372-30391 Msa1437780:CDS 35.0%
TGAAAATGCTCTTACTAGAG+TGG + tig0028361:30432-30451 Msa1437780:CDS 35.0%
AAGTGTCTTTGTCAATTGCA+CGG - tig0028361:30531-30550 None:intergenic 35.0%
! AAAATTCTCCTTGCACTGAT+GGG + tig0028361:30565-30584 Msa1437780:CDS 35.0%
! AAAATCACGCTGATGATGAA+GGG - tig0028361:30656-30675 None:intergenic 35.0%
ACCCCATAATTCATGGAAAA+AGG + tig0028361:30875-30894 Msa1437780:intron 35.0%
! GCCTTTTTCCATGAATTATG+GGG - tig0028361:30879-30898 None:intergenic 35.0%
! GGCCTTTTTCCATGAATTAT+GGG - tig0028361:30880-30899 None:intergenic 35.0%
! TGGCCTTTTTCCATGAATTA+TGG - tig0028361:30881-30900 None:intergenic 35.0%
TAATTCATGGAAAAAGGCCA+AGG + tig0028361:30881-30900 Msa1437780:intron 35.0%
AATTCATGGAAAAAGGCCAA+GGG + tig0028361:30882-30901 Msa1437780:intron 35.0%
ACCCCATAATTCATGGAAAA+AGG + tig0028361:30875-30894 Msa1437780:intron 35.0%
! GCCTTTTTCCATGAATTATG+GGG - tig0028361:30879-30898 None:intergenic 35.0%
! GGCCTTTTTCCATGAATTAT+GGG - tig0028361:30880-30899 None:intergenic 35.0%
! TGGCCTTTTTCCATGAATTA+TGG - tig0028361:30881-30900 None:intergenic 35.0%
TAATTCATGGAAAAAGGCCA+AGG + tig0028361:30881-30900 Msa1437780:intron 35.0%
AATTCATGGAAAAAGGCCAA+GGG + tig0028361:30882-30901 Msa1437780:intron 35.0%
GATCCTGAACACAAACACAA+TGG + tig0028361:28288-28307 Msa1437780:exon 40.0%
AGTCAAAGAAATGGATCGGT+AGG - tig0028361:28393-28412 None:intergenic 40.0%
ACACTCCTATGTTACGTGTT+TGG + tig0028361:28546-28565 Msa1437780:intron 40.0%
TCCTATGTTACGTGTTTGGT+TGG + tig0028361:28550-28569 Msa1437780:intron 40.0%
ACCAACCAAACACGTAACAT+AGG - tig0028361:28554-28573 None:intergenic 40.0%
! AGGCTTGATAATATCGATCC+TGG + tig0028361:28904-28923 Msa1437780:CDS 40.0%
AAGTTCAAGTGGAGATCTTG+TGG - tig0028361:29352-29371 None:intergenic 40.0%
GATAGGCAACATCTTCTTCA+AGG - tig0028361:29416-29435 None:intergenic 40.0%
GATGTTGCCTATCATACTTC+TGG + tig0028361:29423-29442 Msa1437780:CDS 40.0%
! GATGTCACCAGAAGTATGAT+AGG - tig0028361:29433-29452 None:intergenic 40.0%
! CACCAAGATGGGTGTATTTT+TGG - tig0028361:29670-29689 None:intergenic 40.0%
CAAAAATACACCCATCTTGG+TGG + tig0028361:29668-29687 Msa1437780:intron 40.0%
!!! AAAGCTTTTGGTTCCTCTTG+TGG + tig0028361:29805-29824 Msa1437780:intron 40.0%
!!! AAGCTTTTGGTTCCTCTTGT+GGG + tig0028361:29806-29825 Msa1437780:intron 40.0%
AGATGAGGTGAACATGACAT+TGG + tig0028361:29847-29866 Msa1437780:CDS 40.0%
TCATGAGAAGATTGCGGATA+AGG + tig0028361:29892-29911 Msa1437780:CDS 40.0%
ACAATCATGATGACCTGATC+AGG + tig0028361:29918-29937 Msa1437780:CDS 40.0%
! ATTAGATCTGCCCTTTTGCT+GGG - tig0028361:30074-30093 None:intergenic 40.0%
! TATTAGATCTGCCCTTTTGC+TGG - tig0028361:30075-30094 None:intergenic 40.0%
GCAGGATTTGGAAACTGATT+CGG + tig0028361:30303-30322 Msa1437780:intron 40.0%
! TCTTGTTTATAGCCAGCCTA+AGG - tig0028361:30402-30421 None:intergenic 40.0%
! TAGGCTGGCTATAAACAAGA+TGG + tig0028361:30402-30421 Msa1437780:CDS 40.0%
! AGGCTGGCTATAAACAAGAT+GGG + tig0028361:30403-30422 Msa1437780:CDS 40.0%
GCAATTGACAAAGACACTTC+TGG + tig0028361:30532-30551 Msa1437780:CDS 40.0%
GAAAATTCTCCTTGCACTGA+TGG + tig0028361:30564-30583 Msa1437780:CDS 40.0%
CTTAATCTGTCCAGTAGTCA+TGG + tig0028361:30605-30624 Msa1437780:three_prime_UTR 40.0%
! CAAAATCACGCTGATGATGA+AGG - tig0028361:30657-30676 None:intergenic 40.0%
ATGAATTATGGGGTATGCGT+AGG - tig0028361:30869-30888 None:intergenic 40.0%
TACGCATACCCCATAATTCA+TGG + tig0028361:30868-30887 Msa1437780:intron 40.0%
ATGAATTATGGGGTATGCGT+AGG - tig0028361:30869-30888 None:intergenic 40.0%
TACGCATACCCCATAATTCA+TGG + tig0028361:30868-30887 Msa1437780:intron 40.0%
ACTTGAAACAAACACTCCCT+TGG - tig0028361:30998-31017 None:intergenic 40.0%
ACTGAAAGCCAATGTTGGGA+GGG - tig0028361:28240-28259 None:intergenic 45.0%
TACTGAAAGCCAATGTTGGG+AGG - tig0028361:28241-28260 None:intergenic 45.0%
TCGCCATTGTGTTTGTGTTC+AGG - tig0028361:28294-28313 None:intergenic 45.0%
TCACTGTCTTCTGATGGAGA+AGG - tig0028361:28340-28359 None:intergenic 45.0%
GAAGACAGTGAACAATTGCG+CGG + tig0028361:28349-28368 Msa1437780:CDS 45.0%
GGCTAAAAATGCATCACGCT+CGG - tig0028361:29274-29293 None:intergenic 45.0%
TCACCTCATCTCCCTCATAA+CGG - tig0028361:29838-29857 None:intergenic 45.0%
TTGCAACACTCCCAGCAAAA+GGG + tig0028361:30061-30080 Msa1437780:intron 45.0%
TCGAACTAACGTTGAGCTTC+TGG + tig0028361:30278-30297 Msa1437780:intron 45.0%
!! TTTTGAGGAACTCCTTAGGC+TGG + tig0028361:30387-30406 Msa1437780:CDS 45.0%
!! GGTTGATTTGCAGCGAATTG+CGG + tig0028361:30471-30490 Msa1437780:CDS 45.0%
! GAGGAACACTGTTTCTTCTC+TGG - tig0028361:30504-30523 None:intergenic 45.0%
GAGAAGAAACAGTGTTCCTC+TGG + tig0028361:30504-30523 Msa1437780:CDS 45.0%
! TCATCAGCGTGATTTTGCTG+CGG + tig0028361:30660-30679 Msa1437780:three_prime_UTR 45.0%
!!! ATTTTTATTATTATTACTTT+TGG + tig0028361:28464-28483 Msa1437780:intron 5.0%
ATGGAGAAGGAACGTGAGAG+GGG - tig0028361:28327-28346 None:intergenic 50.0%
GATGGAGAAGGAACGTGAGA+GGG - tig0028361:28328-28347 None:intergenic 50.0%
TGATGGAGAAGGAACGTGAG+AGG - tig0028361:28329-28348 None:intergenic 50.0%
! CAATTGCGCGGTGCTTTTCA+AGG + tig0028361:28361-28380 Msa1437780:CDS 50.0%
ACAGGATGGGGAACGAATGA+AGG + tig0028361:28884-28903 Msa1437780:intron 50.0%
GAGCTGCATTTCTATGAGCC+AGG - tig0028361:28925-28944 None:intergenic 50.0%
GAAACTTACACGCAGACCCA+TGG + tig0028361:28962-28981 Msa1437780:CDS 50.0%
! AACAGAAAGCTGTGCTGCTG+TGG + tig0028361:29235-29254 Msa1437780:intron 50.0%
AAAAATGCATCACGCTCGGC+CGG - tig0028361:29270-29289 None:intergenic 50.0%
TACTTCTGGTGACATCCGCA+AGG + tig0028361:29437-29456 Msa1437780:CDS 50.0%
AATACACCCATCTTGGTGGG+TGG + tig0028361:29672-29691 Msa1437780:intron 50.0%
TAACGGTGTATGCCCACAAG+AGG - tig0028361:29821-29840 None:intergenic 50.0%
TGTGGGCATACACCGTTATG+AGG + tig0028361:29823-29842 Msa1437780:CDS 50.0%
GTGGGCATACACCGTTATGA+GGG + tig0028361:29824-29843 Msa1437780:CDS 50.0%
ACACCGTTATGAGGGAGATG+AGG + tig0028361:29832-29851 Msa1437780:CDS 50.0%
GTTGCAACACTCCCAGCAAA+AGG + tig0028361:30060-30079 Msa1437780:intron 50.0%
AGTGGTGACAACTAGAGCTG+AGG + tig0028361:30450-30469 Msa1437780:CDS 50.0%
! TGATTTGCAGCGAATTGCGG+AGG + tig0028361:30474-30493 Msa1437780:CDS 50.0%
TTGTCAATTGCACGGTCCAG+AGG - tig0028361:30523-30542 None:intergenic 50.0%
CATCATGTCCCATCAGTGCA+AGG - tig0028361:30576-30595 None:intergenic 50.0%
TCTGTCCAGTAGTCATGGAG+TGG + tig0028361:30610-30629 Msa1437780:three_prime_UTR 50.0%
AACAGCCACTCCATGACTAC+TGG - tig0028361:30618-30637 None:intergenic 50.0%
GTAGTCATGGAGTGGCTGTT+TGG + tig0028361:30618-30637 Msa1437780:three_prime_UTR 50.0%
!! CAGAATTCGGTGACTTGCTG+TGG + tig0028361:30699-30718 Msa1437780:three_prime_UTR 50.0%
AACCTGCTCCCTCCCAACAT+TGG + tig0028361:28229-28248 Msa1437780:five_prime_UTR 55.0%
GGGTCTGCGTGTAAGTTTCG+CGG - tig0028361:28961-28980 None:intergenic 55.0%
! AGCTGTGCTGCTGTGGACAT+TGG + tig0028361:29242-29261 Msa1437780:CDS 55.0%
GCTGCTGTGGACATTGGATC+CGG + tig0028361:29248-29267 Msa1437780:CDS 55.0%
GGCTATCCACCCACCAAGAT+GGG - tig0028361:29681-29700 None:intergenic 55.0%
TGGCTATCCACCCACCAAGA+TGG - tig0028361:29682-29701 None:intergenic 55.0%
! AACGTTGAGCTTCTGGCTGC+AGG + tig0028361:30285-30304 Msa1437780:intron 55.0%
! GAGCTTCTGGCTGCAGGATT+TGG + tig0028361:30291-30310 Msa1437780:intron 55.0%
AGCCAATGTTGGGAGGGAGC+AGG - tig0028361:28234-28253 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0028361 gene 28220 31063 28220 ID=Msa1437780;Name=Msa1437780
tig0028361 mRNA 28220 31063 28220 ID=Msa1437780-mRNA-1;Parent=Msa1437780;Name=Msa1437780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=87|1|1|1|0.8|0.66|6|366|315
tig0028361 exon 28220 28382 28220 ID=Msa1437780-mRNA-1:exon:10862;Parent=Msa1437780-mRNA-1
tig0028361 exon 28888 29033 28888 ID=Msa1437780-mRNA-1:exon:10863;Parent=Msa1437780-mRNA-1
tig0028361 exon 29240 29458 29240 ID=Msa1437780-mRNA-1:exon:10864;Parent=Msa1437780-mRNA-1
tig0028361 exon 29809 30021 29809 ID=Msa1437780-mRNA-1:exon:10865;Parent=Msa1437780-mRNA-1
tig0028361 exon 30307 30852 30307 ID=Msa1437780-mRNA-1:exon:10866;Parent=Msa1437780-mRNA-1
tig0028361 exon 30950 31063 30950 ID=Msa1437780-mRNA-1:exon:10867;Parent=Msa1437780-mRNA-1
tig0028361 five_prime_UTR 28220 28306 28220 ID=Msa1437780-mRNA-1:five_prime_utr;Parent=Msa1437780-mRNA-1
tig0028361 CDS 28307 28382 28307 ID=Msa1437780-mRNA-1:cds;Parent=Msa1437780-mRNA-1
tig0028361 CDS 28888 29033 28888 ID=Msa1437780-mRNA-1:cds;Parent=Msa1437780-mRNA-1
tig0028361 CDS 29240 29458 29240 ID=Msa1437780-mRNA-1:cds;Parent=Msa1437780-mRNA-1
tig0028361 CDS 29809 30021 29809 ID=Msa1437780-mRNA-1:cds;Parent=Msa1437780-mRNA-1
tig0028361 CDS 30307 30600 30307 ID=Msa1437780-mRNA-1:cds;Parent=Msa1437780-mRNA-1
tig0028361 three_prime_UTR 30601 30852 30601 ID=Msa1437780-mRNA-1:three_prime_utr;Parent=Msa1437780-mRNA-1
tig0028361 three_prime_UTR 30950 31063 30950 ID=Msa1437780-mRNA-1:three_prime_utr;Parent=Msa1437780-mRNA-1
Gene Sequence

>Msa1437780

ATGGCGACATTGAAGATCCCCTCTCACGTTCCTTCTCCATCAGAAGACAGTGAACAATTGCGCGGTGCTTTTCAAGGATGGGGAACGAATGAAGGCTTGATAATATCGATCCTGGCTCATAGAAATGCAGCTCAGCGTAAGTCGATCCGCGAAACTTACACGCAGACCCATGGAGAAGATCTTCTTAAAGATCTTGACAAAGAACTTTCAAGTGATTTTGAGAAAGCTGTGCTGCTGTGGACATTGGATCCGGCCGAGCGTGATGCATTTTTAGCCAATCAAGCAACTAAAATGTTGACTTCAAACAATTCGATCATCGTGGAAATTGCTTCCACAAGATCTCCACTTGAACTTCTTAAGGCAAAGCAAGCATATCAAGTCCGTTTCAAAAAGTCCCTTGAAGAAGATGTTGCCTATCATACTTCTGGTGACATCCGCAAGCTTTTGGTTCCTCTTGTGGGCATACACCGTTATGAGGGAGATGAGGTGAACATGACATTGGCAAAATCTGAAGCTAAATTGCTTCATGAGAAGATTGCGGATAAGGCTTACAATCATGATGACCTGATCAGGATTGTAACAACAAGGAGTAAAGCGCAATTAAATGCAACTTTGAATCACTATAACAATGAGTTTGGGAATGTAATAGACAAGGATTTGGAAACTGATTCGGATGATGAATATCTGAAATTATTGAGGGCAGCAATTAAGGGCTTGACCTACCCTGAGAAATATTTTGAGGAACTCCTTAGGCTGGCTATAAACAAGATGGGAACCGATGAAAATGCTCTTACTAGAGTGGTGACAACTAGAGCTGAGGTTGATTTGCAGCGAATTGCGGAGGAATACCAGAGAAGAAACAGTGTTCCTCTGGACCGTGCAATTGACAAAGACACTTCTGGAGATTATCAGAAAATTCTCCTTGCACTGATGGGACATGATGAGTAG

Protein sequence

>Msa1437780

MATLKIPSHVPSPSEDSEQLRGAFQGWGTNEGLIISILAHRNAAQRKSIRETYTQTHGEDLLKDLDKELSSDFEKAVLLWTLDPAERDAFLANQATKMLTSNNSIIVEIASTRSPLELLKAKQAYQVRFKKSLEEDVAYHTSGDIRKLLVPLVGIHRYEGDEVNMTLAKSEAKLLHEKIADKAYNHDDLIRIVTTRSKAQLNATLNHYNNEFGNVIDKDLETDSDDEYLKLLRAAIKGLTYPEKYFEELLRLAINKMGTDENALTRVVTTRAEVDLQRIAEEYQRRNSVPLDRAIDKDTSGDYQKILLALMGHDE*