AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1407810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407810 MtrunA17_Chr8g0382281 97.460 315 8 0 1 315 1 315 0.0 625
Msa1407810 MtrunA17_Chr5g0425971 66.349 315 106 0 1 315 1 315 2.87e-155 437
Msa1407810 MtrunA17_Chr8g0352611 51.429 315 151 2 1 315 1 313 5.11e-105 309
Msa1407810 MtrunA17_Chr3g0083921 50.476 315 155 1 1 315 1 314 1.15e-103 306
Msa1407810 MtrunA17_Chr3g0083901 49.524 315 157 2 1 314 1 314 9.98e-103 303
Msa1407810 MtrunA17_Chr8g0352621 51.118 313 149 2 1 312 1 310 1.43e-102 303
Msa1407810 MtrunA17_Chr8g0352591 48.397 312 149 2 1 312 1 300 7.79e-93 278
Msa1407810 MtrunA17_Chr2g0293441 43.234 303 172 0 12 314 11 313 1.69e-89 270
Msa1407810 MtrunA17_Chr8g0352571 42.857 315 177 1 1 312 1 315 4.25e-82 251
Msa1407810 MtrunA17_Chr8g0393281 37.855 317 193 3 1 315 1 315 1.46e-72 226
Msa1407810 MtrunA17_Chr1g0162071 36.076 316 198 3 1 314 1 314 1.27e-66 211
Msa1407810 MtrunA17_Chr6g0479411 35.783 313 199 2 1 312 28 339 5.00e-65 208
Msa1407810 MtrunA17_Chr6g0479421 37.580 314 192 3 1 312 1 312 1.11e-64 206
Msa1407810 MtrunA17_Chr1g0210981 36.624 314 195 3 1 312 1 312 1.81e-62 201
Msa1407810 MtrunA17_Chr6g0479391 36.943 314 194 3 1 312 1 312 3.24e-56 184
Msa1407810 MtrunA17_Chr8g0352581 36.792 318 172 8 14 312 4 311 3.59e-50 169
Msa1407810 MtrunA17_Chr6g0461141 26.277 274 194 5 45 310 34 307 4.93e-23 97.1
Msa1407810 MtrunA17_Chr3g0084011 51.351 74 35 1 1 74 1 73 1.47e-17 77.0
Msa1407810 MtrunA17_Chr3g0084021 56.061 66 29 0 145 210 5 70 1.72e-17 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407810 AT5G65020.1 71.656 314 88 1 1 313 1 314 4.40e-170 474
Msa1407810 AT5G10230.1 71.019 314 91 0 1 314 1 314 1.87e-167 468
Msa1407810 AT5G10220.1 69.304 316 95 1 1 314 1 316 3.07e-162 455
Msa1407810 AT5G65020.2 72.664 289 78 1 26 313 11 299 2.59e-157 442
Msa1407810 AT1G35720.1 66.772 316 104 1 1 315 1 316 8.54e-155 436
Msa1407810 AT5G12380.1 51.118 313 152 1 1 313 1 312 1.44e-110 323
Msa1407810 AT2G38760.1 42.138 318 178 2 1 312 1 318 1.63e-82 252
Msa1407810 AT1G68090.1 37.380 313 195 1 1 312 1 313 8.44e-64 204
Msa1407810 AT1G68090.2 37.349 249 151 3 1 244 1 249 2.08e-43 149
Msa1407810 AT2G38750.2 35.526 304 171 6 26 311 2 298 2.87e-43 150
Msa1407810 AT2G38750.1 35.505 307 173 6 23 311 16 315 4.08e-43 151

Find 88 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTGAGGGCAGCAATTA+AGG 0.189714 tig0023324:+75290 Msa1407810:CDS
AATCACTATAACAATGAGTT+TGG 0.243154 tig0023324:+74931 Msa1407810:CDS
ACCCCATAATTCATGGAAAA+AGG 0.279086 tig0023324:+75920 Msa1407810:three_prime_UTR
AATATAATCGATCCGTAATA+AGG 0.286006 tig0023324:-75790 None:intergenic
TCATATTTCTCTCCTTATTA+CGG 0.324655 tig0023324:+75778 Msa1407810:three_prime_UTR
TCGCCATTGTGTTTGTGTTC+AGG 0.345562 tig0023324:-73239 None:intergenic
ATCTCCACTTGAACTTCTTA+AGG 0.350377 tig0023324:+74304 Msa1407810:CDS
TCATGAGAAGATTGCGGATA+AGG 0.357945 tig0023324:+74840 Msa1407810:CDS
GATGTTGCCTATCATACTTC+TGG 0.369007 tig0023324:+74371 Msa1407810:CDS
GTAGTCATGGAGTGGCTGTT+TGG 0.374106 tig0023324:+75566 Msa1407810:three_prime_UTR
GCAATTGACAAAGACACTTC+TGG 0.392622 tig0023324:+75480 Msa1407810:CDS
TACGCATACCCCATAATTCA+TGG 0.395314 tig0023324:+75913 Msa1407810:three_prime_UTR
AGTTCCTCAAAATATTTCTC+AGG 0.401647 tig0023324:-75324 None:intergenic
TTATTGAGGGCAGCAATTAA+GGG 0.414248 tig0023324:+75291 Msa1407810:CDS
ATCACTATAACAATGAGTTT+GGG 0.415323 tig0023324:+74932 Msa1407810:CDS
TCTTGATAGTATACAGAATT+CGG 0.419227 tig0023324:+75634 Msa1407810:three_prime_UTR
AGCTGTTTCATTATTTAAGA+AGG 0.431198 tig0023324:-75754 None:intergenic
GAGGAACACTGTTTCTTCTC+TGG 0.435446 tig0023324:-75449 None:intergenic
GCAGGATTTGGAAACTGATT+CGG 0.447953 tig0023324:+75251 Msa1407810:intron
AGTTTATTAAACTTATCTCC+TGG 0.453050 tig0023324:+75963 Msa1407810:three_prime_UTR
TGTGGGCATACACCGTTATG+AGG 0.458266 tig0023324:+74771 Msa1407810:CDS
TTGTTGTTACAATCCTGATC+AGG 0.458748 tig0023324:-74879 None:intergenic
ACAGGATGGGGAACGAATGA+AGG 0.469249 tig0023324:+73832 Msa1407810:intron
GATAGGCAACATCTTCTTCA+AGG 0.470858 tig0023324:-74361 None:intergenic
ACAATCATGATGACCTGATC+AGG 0.471756 tig0023324:+74866 Msa1407810:CDS
CAAAATCACGCTGATGATGA+AGG 0.476971 tig0023324:-75602 None:intergenic
AACAGCCACTCCATGACTAC+TGG 0.479223 tig0023324:-75563 None:intergenic
ATGAATATCTGAAATTATTG+AGG 0.486467 tig0023324:+75277 Msa1407810:CDS
AGCTGTGCTGCTGTGGACAT+TGG 0.493673 tig0023324:+74190 Msa1407810:CDS
GAAAATTCTCCTTGCACTGA+TGG 0.493991 tig0023324:+75512 Msa1407810:CDS
GAGAAGAAACAGTGTTCCTC+TGG 0.495918 tig0023324:+75452 Msa1407810:CDS
TGAATACTGAAAGCCAATGT+TGG 0.496726 tig0023324:-73190 None:intergenic
GAGCTGCATTTCTATGAGCC+AGG 0.520838 tig0023324:-73870 None:intergenic
CTTTAAGAAGATCTTCTCCA+TGG 0.522934 tig0023324:-73927 None:intergenic
GAATACTGAAAGCCAATGTT+GGG 0.523577 tig0023324:-73189 None:intergenic
TGAATATCTGAAATTATTGA+GGG 0.538168 tig0023324:+75278 Msa1407810:CDS
TAGGCTGGCTATAAACAAGA+TGG 0.541067 tig0023324:+75350 Msa1407810:CDS
AGCCAATGTTGGGAGGGAGC+AGG 0.542457 tig0023324:-73179 None:intergenic
AAAATTCTCCTTGCACTGAT+GGG 0.542533 tig0023324:+75513 Msa1407810:CDS
AACAGAAAGCTGTGCTGCTG+TGG 0.544066 tig0023324:+74183 Msa1407810:intron
AATTGTTCACTGTCTTCTGA+TGG 0.548405 tig0023324:-73291 None:intergenic
AAGTTCAAGTGGAGATCTTG+TGG 0.549416 tig0023324:-74297 None:intergenic
GATGGAGAAGGAACGTGAGA+GGG 0.549677 tig0023324:-73273 None:intergenic
ACTTGAAACAAACACTCCCT+TGG 0.550478 tig0023324:-75943 None:intergenic
CTTAATCTGTCCAGTAGTCA+TGG 0.553997 tig0023324:+75553 Msa1407810:three_prime_UTR
TCTTGTTTATAGCCAGCCTA+AGG 0.557307 tig0023324:-75347 None:intergenic
AGGCTTGATAATATCGATCC+TGG 0.557589 tig0023324:+73852 Msa1407810:CDS
ATGAATTATGGGGTATGCGT+AGG 0.559037 tig0023324:-75911 None:intergenic
AACCTGCTCCCTCCCAACAT+TGG 0.565034 tig0023324:+73177 Msa1407810:five_prime_UTR
GTTCCTCAAAATATTTCTCA+GGG 0.565806 tig0023324:-75323 None:intergenic
GCTGCTGTGGACATTGGATC+CGG 0.567043 tig0023324:+74196 Msa1407810:CDS
GGGTCTGCGTGTAAGTTTCG+CGG 0.567457 tig0023324:-73906 None:intergenic
GATGTCACCAGAAGTATGAT+AGG 0.569427 tig0023324:-74378 None:intergenic
CAGAATTCGGTGACTTGCTG+TGG 0.582038 tig0023324:+75647 Msa1407810:three_prime_UTR
GGTTGATTTGCAGCGAATTG+CGG 0.585356 tig0023324:+75419 Msa1407810:CDS
AAAATCACGCTGATGATGAA+GGG 0.586986 tig0023324:-75601 None:intergenic
AAGTGTCTTTGTCAATTGCA+CGG 0.589714 tig0023324:-75476 None:intergenic
TACTGAAAGCCAATGTTGGG+AGG 0.589846 tig0023324:-73186 None:intergenic
GTGATATGTATGAACTATTG+TGG 0.591619 tig0023324:+75681 Msa1407810:three_prime_UTR
TTTAAGAAGATCTTCTCCAT+GGG 0.594102 tig0023324:-73926 None:intergenic
TTGTCAATTGCACGGTCCAG+AGG 0.595483 tig0023324:-75468 None:intergenic
TCACCTCATCTCCCTCATAA+CGG 0.595788 tig0023324:-74783 None:intergenic
TGATGGAGAAGGAACGTGAG+AGG 0.596195 tig0023324:-73274 None:intergenic
ATAGGCAACATCTTCTTCAA+GGG 0.598603 tig0023324:-74360 None:intergenic
TGATTTGCAGCGAATTGCGG+AGG 0.598869 tig0023324:+75422 Msa1407810:CDS
TGAAAATGCTCTTACTAGAG+TGG 0.606160 tig0023324:+75380 Msa1407810:CDS
CATCATGTCCCATCAGTGCA+AGG 0.606991 tig0023324:-75521 None:intergenic
ATTGCTTCATGAGAAGATTG+CGG 0.611914 tig0023324:+74834 Msa1407810:CDS
GTGGGCATACACCGTTATGA+GGG 0.616438 tig0023324:+74772 Msa1407810:CDS
GAAACTTACACGCAGACCCA+TGG 0.623172 tig0023324:+73910 Msa1407810:CDS
AGGCTGGCTATAAACAAGAT+GGG 0.624496 tig0023324:+75351 Msa1407810:CDS
ACTGAAAGCCAATGTTGGGA+GGG 0.625318 tig0023324:-73185 None:intergenic
AGATGAGGTGAACATGACAT+TGG 0.629033 tig0023324:+74795 Msa1407810:CDS
TAACGGTGTATGCCCACAAG+AGG 0.631350 tig0023324:-74766 None:intergenic
CTCAAAATATTTCTCAGGGT+AGG 0.640542 tig0023324:-75319 None:intergenic
TCACTGTCTTCTGATGGAGA+AGG 0.641986 tig0023324:-73285 None:intergenic
ATGGAGAAGGAACGTGAGAG+GGG 0.642321 tig0023324:-73272 None:intergenic
TTTGCCTTAAGAAGTTCAAG+TGG 0.642700 tig0023324:-74308 None:intergenic
ACACCGTTATGAGGGAGATG+AGG 0.647772 tig0023324:+74780 Msa1407810:CDS
TCTGTCCAGTAGTCATGGAG+TGG 0.655004 tig0023324:+75558 Msa1407810:three_prime_UTR
TTCAAACAATTCGATCATCG+TGG 0.667000 tig0023324:+74265 Msa1407810:CDS
TACTTCTGGTGACATCCGCA+AGG 0.668178 tig0023324:+74385 Msa1407810:CDS
AGTGGTGACAACTAGAGCTG+AGG 0.671413 tig0023324:+75398 Msa1407810:CDS
GTTTGGGAATGTAATAGACA+AGG 0.682197 tig0023324:+74948 Msa1407810:CDS
ATCGATCTGTGTGTATAATG+TGG 0.684795 tig0023324:-73216 None:intergenic
TGATCAGGATTGTAACAACA+AGG 0.686508 tig0023324:+74881 Msa1407810:CDS
GAAGACAGTGAACAATTGCG+CGG 0.707759 tig0023324:+73297 Msa1407810:CDS
GATCCTGAACACAAACACAA+TGG 0.715353 tig0023324:+73236 Msa1407810:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTTAAAATTTTGATATA+TGG + tig0023324:73984-74003 Msa1407810:intron 10.0%
!!! TAAATAATATGTTTTGAATA+TGG + tig0023324:75707-75726 Msa1407810:three_prime_UTR 10.0%
!!! ATTAACTTCCTTTTAATTAA+AGG + tig0023324:75130-75149 Msa1407810:intron 15.0%
!!! TTAACTTCCTTTTAATTAAA+GGG + tig0023324:75131-75150 Msa1407810:intron 15.0%
!! TGAAATAAAAGTCAAAGAAA+TGG - tig0023324:73350-73369 None:intergenic 20.0%
!! CTAATATCTTAATTAGATCA+TGG + tig0023324:73448-73467 Msa1407810:intron 20.0%
!!! ATATTTCTAGTTAATGAATG+TGG + tig0023324:73560-73579 Msa1407810:intron 20.0%
!! CAAGAAATTAGTAAGTTTAA+GGG - tig0023324:74415-74434 None:intergenic 20.0%
!! TCAAGAAATTAGTAAGTTTA+AGG - tig0023324:74416-74435 None:intergenic 20.0%
!!! TGTAAATCTTTTCAACTTTA+AGG + tig0023324:74535-74554 Msa1407810:intron 20.0%
!! AAAGGTTAAATACATATAAC+TGG - tig0023324:74654-74673 None:intergenic 20.0%
!! ACAGAAATAAGAATCATAAA+TGG - tig0023324:74988-75007 None:intergenic 20.0%
!! ATATTTCTTGAAGAGAAAAA+TGG - tig0023324:75076-75095 None:intergenic 20.0%
!! CTTCATCAATAATATGATTA+TGG - tig0023324:75108-75127 None:intergenic 20.0%
!! CTATAATCCCTTTAATTAAA+AGG - tig0023324:75141-75160 None:intergenic 20.0%
!!! ATGAATATCTGAAATTATTG+AGG + tig0023324:75277-75296 Msa1407810:CDS 20.0%
!!! TGAATATCTGAAATTATTGA+GGG + tig0023324:75278-75297 Msa1407810:CDS 20.0%
!! TATTTCCAAAAAATTATTCC+AGG - tig0023324:75984-76003 None:intergenic 20.0%
! TAAAAGTCAAAGAAATGGAT+CGG - tig0023324:73345-73364 None:intergenic 25.0%
!! TTTTTCCTTTGTGTTTTTCA+TGG + tig0023324:73751-73770 Msa1407810:intron 25.0%
! TCAACAATTGTTAGTGAAAA+TGG - tig0023324:74058-74077 None:intergenic 25.0%
! TATATGAATAACCTTGACTA+AGG + tig0023324:74112-74131 Msa1407810:intron 25.0%
!!! CAAGGTATTTTCATGTAATA+AGG + tig0023324:74143-74162 Msa1407810:intron 25.0%
! AAAATCTTCCAAAATTTACG+TGG + tig0023324:74512-74531 Msa1407810:intron 25.0%
!! ATTCTTTTGACATAAATCTG+AGG - tig0023324:74586-74605 None:intergenic 25.0%
! GTTAAATACATATAACTGGT+TGG - tig0023324:74650-74669 None:intergenic 25.0%
! AACAAAATTTCATCAGACAA+CGG - tig0023324:74719-74738 None:intergenic 25.0%
! AATCACTATAACAATGAGTT+TGG + tig0023324:74931-74950 Msa1407810:CDS 25.0%
! ATCACTATAACAATGAGTTT+GGG + tig0023324:74932-74951 Msa1407810:CDS 25.0%
! TCAATAATATGATTATGGCT+GGG - tig0023324:75103-75122 None:intergenic 25.0%
! ATCAATAATATGATTATGGC+TGG - tig0023324:75104-75123 None:intergenic 25.0%
! TCAATTTCTTCTGTAGAAAA+AGG + tig0023324:75175-75194 Msa1407810:intron 25.0%
!!! AGGATAACCTTTTTTTTACT+AGG + tig0023324:75195-75214 Msa1407810:intron 25.0%
!!! GGATAACCTTTTTTTTACTA+GGG + tig0023324:75196-75215 Msa1407810:intron 25.0%
! TACAAACCCTAGTAAAAAAA+AGG - tig0023324:75205-75224 None:intergenic 25.0%
!! TCTTGATAGTATACAGAATT+CGG + tig0023324:75634-75653 Msa1407810:three_prime_UTR 25.0%
!! AGCTGTTTCATTATTTAAGA+AGG - tig0023324:75757-75776 None:intergenic 25.0%
! TCATATTTCTCTCCTTATTA+CGG + tig0023324:75778-75797 Msa1407810:three_prime_UTR 25.0%
! AATATAATCGATCCGTAATA+AGG - tig0023324:75793-75812 None:intergenic 25.0%
! TTTCATTATTTAAACTCCCT+TGG - tig0023324:75849-75868 None:intergenic 25.0%
! TCATATTTCTCTCCTTATTA+CGG + tig0023324:75778-75797 Msa1407810:three_prime_UTR 25.0%
! AATATAATCGATCCGTAATA+AGG - tig0023324:75793-75812 None:intergenic 25.0%
! AGTTTATTAAACTTATCTCC+TGG + tig0023324:75963-75982 Msa1407810:three_prime_UTR 25.0%
!!! TATCTCCTGGAATAATTTTT+TGG + tig0023324:75976-75995 Msa1407810:three_prime_UTR 25.0%
AATAAGCAGTGCTCAAATAA+GGG + tig0023324:73721-73740 Msa1407810:intron 30.0%
AAACAACAATATGAATGGAC+AGG - tig0023324:73797-73816 None:intergenic 30.0%
!! GTCCATTCATATTGTTGTTT+CGG + tig0023324:73797-73816 Msa1407810:intron 30.0%
!! TTTCGGTGACATATTTTTAC+AGG + tig0023324:73814-73833 Msa1407810:intron 30.0%
!! GTGACATATTTTTACAGGAT+GGG + tig0023324:73819-73838 Msa1407810:intron 30.0%
!! TGACATATTTTTACAGGATG+GGG + tig0023324:73820-73839 Msa1407810:intron 30.0%
TTTAAGAAGATCTTCTCCAT+GGG - tig0023324:73929-73948 None:intergenic 30.0%
!! AGAACTTTCAAGTGATTTTG+AGG + tig0023324:73960-73979 Msa1407810:CDS 30.0%
!!! CAACATTTTAGTTGCTTGAT+TGG - tig0023324:74243-74262 None:intergenic 30.0%
! GATTTACACCACGTAAATTT+TGG - tig0023324:74523-74542 None:intergenic 30.0%
GGCATTCTTCTACTAAATAA+AGG - tig0023324:74565-74584 None:intergenic 30.0%
GCATAAGCATAAACATGAAA+AGG - tig0023324:74672-74691 None:intergenic 30.0%
ACAAAATTTCATCAGACAAC+GGG - tig0023324:74718-74737 None:intergenic 30.0%
! TGATTCTTCTCAAAAGCTTT+TGG + tig0023324:74741-74760 Msa1407810:intron 30.0%
! TAGACAAGGTATGAATGTTT+TGG + tig0023324:74962-74981 Msa1407810:intron 30.0%
GTTCCTCAAAATATTTCTCA+GGG - tig0023324:75326-75345 None:intergenic 30.0%
AGTTCCTCAAAATATTTCTC+AGG - tig0023324:75327-75346 None:intergenic 30.0%
!! AATATTTTGAGGAACTCCTT+AGG + tig0023324:75331-75350 Msa1407810:CDS 30.0%
!!! TCTAGTAAGAGCATTTTCAT+CGG - tig0023324:75379-75398 None:intergenic 30.0%
GTGATATGTATGAACTATTG+TGG + tig0023324:75681-75700 Msa1407810:three_prime_UTR 30.0%
GAATACTGAAAGCCAATGTT+GGG - tig0023324:73192-73211 None:intergenic 35.0%
TGAATACTGAAAGCCAATGT+TGG - tig0023324:73193-73212 None:intergenic 35.0%
ATCGATCTGTGTGTATAATG+TGG - tig0023324:73219-73238 None:intergenic 35.0%
AATTGTTCACTGTCTTCTGA+TGG - tig0023324:73294-73313 None:intergenic 35.0%
TTTGGACTACATGAAGAGAT+CGG - tig0023324:73639-73658 None:intergenic 35.0%
GATTCATCGTGATCATGATT+TGG - tig0023324:73657-73676 None:intergenic 35.0%
GAATAAGCAGTGCTCAAATA+AGG + tig0023324:73720-73739 Msa1407810:intron 35.0%
TCATGCCATGAAAAACACAA+AGG - tig0023324:73759-73778 None:intergenic 35.0%
CACCGAAACAACAATATGAA+TGG - tig0023324:73802-73821 None:intergenic 35.0%
!! GGTGACATATTTTTACAGGA+TGG + tig0023324:73818-73837 Msa1407810:intron 35.0%
! CTTTAAGAAGATCTTCTCCA+TGG - tig0023324:73930-73949 None:intergenic 35.0%
TTGACATGAAACCTTAGTCA+AGG - tig0023324:74126-74145 None:intergenic 35.0%
TTGACTAAGGTTTCATGTCA+AGG + tig0023324:74125-74144 Msa1407810:intron 35.0%
TTCAAACAATTCGATCATCG+TGG + tig0023324:74265-74284 Msa1407810:CDS 35.0%
ATCTCCACTTGAACTTCTTA+AGG + tig0023324:74304-74323 Msa1407810:CDS 35.0%
TTTGCCTTAAGAAGTTCAAG+TGG - tig0023324:74311-74330 None:intergenic 35.0%
!! CTTCAAGGGACTTTTTGAAA+CGG - tig0023324:74349-74368 None:intergenic 35.0%
ATAGGCAACATCTTCTTCAA+GGG - tig0023324:74363-74382 None:intergenic 35.0%
AAGTTTAAGGGTTTACCTTG+CGG - tig0023324:74403-74422 None:intergenic 35.0%
TTCCAAAAATACACCCATCT+TGG + tig0023324:74613-74632 Msa1407810:intron 35.0%
AAAAATACACCCATCTTGGT+GGG + tig0023324:74617-74636 Msa1407810:intron 35.0%
AAAAACGTCAGATCAAGACA+TGG - tig0023324:74694-74713 None:intergenic 35.0%
CAAAATTTCATCAGACAACG+GGG - tig0023324:74717-74736 None:intergenic 35.0%
ATTGCTTCATGAGAAGATTG+CGG + tig0023324:74834-74853 Msa1407810:CDS 35.0%
! TTGTTGTTACAATCCTGATC+AGG - tig0023324:74882-74901 None:intergenic 35.0%
TGATCAGGATTGTAACAACA+AGG + tig0023324:74881-74900 Msa1407810:CDS 35.0%
GTTTGGGAATGTAATAGACA+AGG + tig0023324:74948-74967 Msa1407810:CDS 35.0%
ATTATTGAGGGCAGCAATTA+AGG + tig0023324:75290-75309 Msa1407810:CDS 35.0%
TTATTGAGGGCAGCAATTAA+GGG + tig0023324:75291-75310 Msa1407810:CDS 35.0%
CTCAAAATATTTCTCAGGGT+AGG - tig0023324:75322-75341 None:intergenic 35.0%
! CTACCCTGAGAAATATTTTG+AGG + tig0023324:75320-75339 Msa1407810:CDS 35.0%
TGAAAATGCTCTTACTAGAG+TGG + tig0023324:75380-75399 Msa1407810:CDS 35.0%
AAGTGTCTTTGTCAATTGCA+CGG - tig0023324:75479-75498 None:intergenic 35.0%
! AAAATTCTCCTTGCACTGAT+GGG + tig0023324:75513-75532 Msa1407810:CDS 35.0%
! AAAATCACGCTGATGATGAA+GGG - tig0023324:75604-75623 None:intergenic 35.0%
ACCCCATAATTCATGGAAAA+AGG + tig0023324:75823-75842 Msa1407810:intron 35.0%
! GCCTTTTTCCATGAATTATG+GGG - tig0023324:75827-75846 None:intergenic 35.0%
! GGCCTTTTTCCATGAATTAT+GGG - tig0023324:75828-75847 None:intergenic 35.0%
! TGGCCTTTTTCCATGAATTA+TGG - tig0023324:75829-75848 None:intergenic 35.0%
TAATTCATGGAAAAAGGCCA+AGG + tig0023324:75829-75848 Msa1407810:intron 35.0%
AATTCATGGAAAAAGGCCAA+GGG + tig0023324:75830-75849 Msa1407810:intron 35.0%
ACCCCATAATTCATGGAAAA+AGG + tig0023324:75823-75842 Msa1407810:intron 35.0%
! GCCTTTTTCCATGAATTATG+GGG - tig0023324:75827-75846 None:intergenic 35.0%
! GGCCTTTTTCCATGAATTAT+GGG - tig0023324:75828-75847 None:intergenic 35.0%
! TGGCCTTTTTCCATGAATTA+TGG - tig0023324:75829-75848 None:intergenic 35.0%
TAATTCATGGAAAAAGGCCA+AGG + tig0023324:75829-75848 Msa1407810:intron 35.0%
AATTCATGGAAAAAGGCCAA+GGG + tig0023324:75830-75849 Msa1407810:intron 35.0%
GATCCTGAACACAAACACAA+TGG + tig0023324:73236-73255 Msa1407810:exon 40.0%
AGTCAAAGAAATGGATCGGT+AGG - tig0023324:73341-73360 None:intergenic 40.0%
ACACTCCTATGTTACGTGTT+TGG + tig0023324:73494-73513 Msa1407810:intron 40.0%
TCCTATGTTACGTGTTTGGT+TGG + tig0023324:73498-73517 Msa1407810:intron 40.0%
ACCAACCAAACACGTAACAT+AGG - tig0023324:73502-73521 None:intergenic 40.0%
! AGGCTTGATAATATCGATCC+TGG + tig0023324:73852-73871 Msa1407810:CDS 40.0%
AAGTTCAAGTGGAGATCTTG+TGG - tig0023324:74300-74319 None:intergenic 40.0%
GATAGGCAACATCTTCTTCA+AGG - tig0023324:74364-74383 None:intergenic 40.0%
GATGTTGCCTATCATACTTC+TGG + tig0023324:74371-74390 Msa1407810:CDS 40.0%
! GATGTCACCAGAAGTATGAT+AGG - tig0023324:74381-74400 None:intergenic 40.0%
! CACCAAGATGGGTGTATTTT+TGG - tig0023324:74618-74637 None:intergenic 40.0%
CAAAAATACACCCATCTTGG+TGG + tig0023324:74616-74635 Msa1407810:intron 40.0%
!!! AAAGCTTTTGGTTCCTCTTG+TGG + tig0023324:74753-74772 Msa1407810:intron 40.0%
!!! AAGCTTTTGGTTCCTCTTGT+GGG + tig0023324:74754-74773 Msa1407810:intron 40.0%
AGATGAGGTGAACATGACAT+TGG + tig0023324:74795-74814 Msa1407810:CDS 40.0%
TCATGAGAAGATTGCGGATA+AGG + tig0023324:74840-74859 Msa1407810:CDS 40.0%
ACAATCATGATGACCTGATC+AGG + tig0023324:74866-74885 Msa1407810:CDS 40.0%
! ATTAGATCTGCCCTTTTGCT+GGG - tig0023324:75022-75041 None:intergenic 40.0%
! TATTAGATCTGCCCTTTTGC+TGG - tig0023324:75023-75042 None:intergenic 40.0%
GCAGGATTTGGAAACTGATT+CGG + tig0023324:75251-75270 Msa1407810:intron 40.0%
! TCTTGTTTATAGCCAGCCTA+AGG - tig0023324:75350-75369 None:intergenic 40.0%
! TAGGCTGGCTATAAACAAGA+TGG + tig0023324:75350-75369 Msa1407810:CDS 40.0%
! AGGCTGGCTATAAACAAGAT+GGG + tig0023324:75351-75370 Msa1407810:CDS 40.0%
GCAATTGACAAAGACACTTC+TGG + tig0023324:75480-75499 Msa1407810:CDS 40.0%
GAAAATTCTCCTTGCACTGA+TGG + tig0023324:75512-75531 Msa1407810:CDS 40.0%
CTTAATCTGTCCAGTAGTCA+TGG + tig0023324:75553-75572 Msa1407810:three_prime_UTR 40.0%
! CAAAATCACGCTGATGATGA+AGG - tig0023324:75605-75624 None:intergenic 40.0%
ATGAATTATGGGGTATGCGT+AGG - tig0023324:75817-75836 None:intergenic 40.0%
TACGCATACCCCATAATTCA+TGG + tig0023324:75816-75835 Msa1407810:intron 40.0%
ATGAATTATGGGGTATGCGT+AGG - tig0023324:75817-75836 None:intergenic 40.0%
TACGCATACCCCATAATTCA+TGG + tig0023324:75816-75835 Msa1407810:intron 40.0%
ACTTGAAACAAACACTCCCT+TGG - tig0023324:75946-75965 None:intergenic 40.0%
ACTGAAAGCCAATGTTGGGA+GGG - tig0023324:73188-73207 None:intergenic 45.0%
TACTGAAAGCCAATGTTGGG+AGG - tig0023324:73189-73208 None:intergenic 45.0%
TCGCCATTGTGTTTGTGTTC+AGG - tig0023324:73242-73261 None:intergenic 45.0%
TCACTGTCTTCTGATGGAGA+AGG - tig0023324:73288-73307 None:intergenic 45.0%
GAAGACAGTGAACAATTGCG+CGG + tig0023324:73297-73316 Msa1407810:CDS 45.0%
GGCTAAAAATGCATCACGCT+CGG - tig0023324:74222-74241 None:intergenic 45.0%
TCACCTCATCTCCCTCATAA+CGG - tig0023324:74786-74805 None:intergenic 45.0%
TTGCAACACTCCCAGCAAAA+GGG + tig0023324:75009-75028 Msa1407810:intron 45.0%
TCGAACTAACGTTGAGCTTC+TGG + tig0023324:75226-75245 Msa1407810:intron 45.0%
!! TTTTGAGGAACTCCTTAGGC+TGG + tig0023324:75335-75354 Msa1407810:CDS 45.0%
!! GGTTGATTTGCAGCGAATTG+CGG + tig0023324:75419-75438 Msa1407810:CDS 45.0%
! GAGGAACACTGTTTCTTCTC+TGG - tig0023324:75452-75471 None:intergenic 45.0%
GAGAAGAAACAGTGTTCCTC+TGG + tig0023324:75452-75471 Msa1407810:CDS 45.0%
! TCATCAGCGTGATTTTGCTG+CGG + tig0023324:75608-75627 Msa1407810:three_prime_UTR 45.0%
!!! ATTTTTATTATTATTACTTT+TGG + tig0023324:73412-73431 Msa1407810:intron 5.0%
ATGGAGAAGGAACGTGAGAG+GGG - tig0023324:73275-73294 None:intergenic 50.0%
GATGGAGAAGGAACGTGAGA+GGG - tig0023324:73276-73295 None:intergenic 50.0%
TGATGGAGAAGGAACGTGAG+AGG - tig0023324:73277-73296 None:intergenic 50.0%
! CAATTGCGCGGTGCTTTTCA+AGG + tig0023324:73309-73328 Msa1407810:CDS 50.0%
ACAGGATGGGGAACGAATGA+AGG + tig0023324:73832-73851 Msa1407810:intron 50.0%
GAGCTGCATTTCTATGAGCC+AGG - tig0023324:73873-73892 None:intergenic 50.0%
GAAACTTACACGCAGACCCA+TGG + tig0023324:73910-73929 Msa1407810:CDS 50.0%
! AACAGAAAGCTGTGCTGCTG+TGG + tig0023324:74183-74202 Msa1407810:intron 50.0%
AAAAATGCATCACGCTCGGC+CGG - tig0023324:74218-74237 None:intergenic 50.0%
TACTTCTGGTGACATCCGCA+AGG + tig0023324:74385-74404 Msa1407810:CDS 50.0%
AATACACCCATCTTGGTGGG+TGG + tig0023324:74620-74639 Msa1407810:intron 50.0%
TAACGGTGTATGCCCACAAG+AGG - tig0023324:74769-74788 None:intergenic 50.0%
TGTGGGCATACACCGTTATG+AGG + tig0023324:74771-74790 Msa1407810:CDS 50.0%
GTGGGCATACACCGTTATGA+GGG + tig0023324:74772-74791 Msa1407810:CDS 50.0%
ACACCGTTATGAGGGAGATG+AGG + tig0023324:74780-74799 Msa1407810:CDS 50.0%
GTTGCAACACTCCCAGCAAA+AGG + tig0023324:75008-75027 Msa1407810:intron 50.0%
AGTGGTGACAACTAGAGCTG+AGG + tig0023324:75398-75417 Msa1407810:CDS 50.0%
! TGATTTGCAGCGAATTGCGG+AGG + tig0023324:75422-75441 Msa1407810:CDS 50.0%
TTGTCAATTGCACGGTCCAG+AGG - tig0023324:75471-75490 None:intergenic 50.0%
CATCATGTCCCATCAGTGCA+AGG - tig0023324:75524-75543 None:intergenic 50.0%
TCTGTCCAGTAGTCATGGAG+TGG + tig0023324:75558-75577 Msa1407810:three_prime_UTR 50.0%
AACAGCCACTCCATGACTAC+TGG - tig0023324:75566-75585 None:intergenic 50.0%
GTAGTCATGGAGTGGCTGTT+TGG + tig0023324:75566-75585 Msa1407810:three_prime_UTR 50.0%
!! CAGAATTCGGTGACTTGCTG+TGG + tig0023324:75647-75666 Msa1407810:three_prime_UTR 50.0%
AACCTGCTCCCTCCCAACAT+TGG + tig0023324:73177-73196 Msa1407810:five_prime_UTR 55.0%
GGGTCTGCGTGTAAGTTTCG+CGG - tig0023324:73909-73928 None:intergenic 55.0%
! AGCTGTGCTGCTGTGGACAT+TGG + tig0023324:74190-74209 Msa1407810:CDS 55.0%
GCTGCTGTGGACATTGGATC+CGG + tig0023324:74196-74215 Msa1407810:CDS 55.0%
GGCTATCCACCCACCAAGAT+GGG - tig0023324:74629-74648 None:intergenic 55.0%
TGGCTATCCACCCACCAAGA+TGG - tig0023324:74630-74649 None:intergenic 55.0%
! AACGTTGAGCTTCTGGCTGC+AGG + tig0023324:75233-75252 Msa1407810:intron 55.0%
! GAGCTTCTGGCTGCAGGATT+TGG + tig0023324:75239-75258 Msa1407810:intron 55.0%
AGCCAATGTTGGGAGGGAGC+AGG - tig0023324:73182-73201 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0023324 gene 73168 76011 73168 ID=Msa1407810;Name=Msa1407810
tig0023324 mRNA 73168 76011 73168 ID=Msa1407810-mRNA-1;Parent=Msa1407810;Name=Msa1407810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=87|1|1|1|0.8|0.66|6|366|315
tig0023324 exon 73168 73330 73168 ID=Msa1407810-mRNA-1:exon:25247;Parent=Msa1407810-mRNA-1
tig0023324 exon 73836 73981 73836 ID=Msa1407810-mRNA-1:exon:25248;Parent=Msa1407810-mRNA-1
tig0023324 exon 74188 74406 74188 ID=Msa1407810-mRNA-1:exon:25249;Parent=Msa1407810-mRNA-1
tig0023324 exon 74757 74969 74757 ID=Msa1407810-mRNA-1:exon:25250;Parent=Msa1407810-mRNA-1
tig0023324 exon 75255 75800 75255 ID=Msa1407810-mRNA-1:exon:25251;Parent=Msa1407810-mRNA-1
tig0023324 exon 75898 76011 75898 ID=Msa1407810-mRNA-1:exon:25252;Parent=Msa1407810-mRNA-1
tig0023324 five_prime_UTR 73168 73254 73168 ID=Msa1407810-mRNA-1:five_prime_utr;Parent=Msa1407810-mRNA-1
tig0023324 CDS 73255 73330 73255 ID=Msa1407810-mRNA-1:cds;Parent=Msa1407810-mRNA-1
tig0023324 CDS 73836 73981 73836 ID=Msa1407810-mRNA-1:cds;Parent=Msa1407810-mRNA-1
tig0023324 CDS 74188 74406 74188 ID=Msa1407810-mRNA-1:cds;Parent=Msa1407810-mRNA-1
tig0023324 CDS 74757 74969 74757 ID=Msa1407810-mRNA-1:cds;Parent=Msa1407810-mRNA-1
tig0023324 CDS 75255 75548 75255 ID=Msa1407810-mRNA-1:cds;Parent=Msa1407810-mRNA-1
tig0023324 three_prime_UTR 75549 75800 75549 ID=Msa1407810-mRNA-1:three_prime_utr;Parent=Msa1407810-mRNA-1
tig0023324 three_prime_UTR 75898 76011 75898 ID=Msa1407810-mRNA-1:three_prime_utr;Parent=Msa1407810-mRNA-1
Gene Sequence

>Msa1407810

ATGGCGACATTGAAGATCCCCTCTCACGTTCCTTCTCCATCAGAAGACAGTGAACAATTGCGCGGTGCTTTTCAAGGATGGGGAACGAATGAAGGCTTGATAATATCGATCCTGGCTCATAGAAATGCAGCTCAGCGTAAGTCGATCCGCGAAACTTACACGCAGACCCATGGAGAAGATCTTCTTAAAGATCTTGACAAAGAACTTTCAAGTGATTTTGAGAAAGCTGTGCTGCTGTGGACATTGGATCCGGCCGAGCGTGATGCATTTTTAGCCAATCAAGCAACTAAAATGTTGACTTCAAACAATTCGATCATCGTGGAAATTGCTTCCACAAGATCTCCACTTGAACTTCTTAAGGCAAAGCAAGCATATCAAGTCCGTTTCAAAAAGTCCCTTGAAGAAGATGTTGCCTATCATACTTCTGGTGACATCCGCAAGCTTTTGGTTCCTCTTGTGGGCATACACCGTTATGAGGGAGATGAGGTGAACATGACATTGGCAAAATCTGAAGCTAAATTGCTTCATGAGAAGATTGCGGATAAGGCTTACAATCATGATGACCTGATCAGGATTGTAACAACAAGGAGTAAAGCGCAATTAAATGCAACTTTGAATCACTATAACAATGAGTTTGGGAATGTAATAGACAAGGATTTGGAAACTGATTCGGATGATGAATATCTGAAATTATTGAGGGCAGCAATTAAGGGCTTGACCTACCCTGAGAAATATTTTGAGGAACTCCTTAGGCTGGCTATAAACAAGATGGGAACCGATGAAAATGCTCTTACTAGAGTGGTGACAACTAGAGCTGAGGTTGATTTGCAGCGAATTGCGGAGGAATACCAGAGAAGAAACAGTGTTCCTCTGGACCGTGCAATTGACAAAGACACTTCTGGAGATTATCAGAAAATTCTCCTTGCACTGATGGGACATGATGAGTAG

Protein sequence

>Msa1407810

MATLKIPSHVPSPSEDSEQLRGAFQGWGTNEGLIISILAHRNAAQRKSIRETYTQTHGEDLLKDLDKELSSDFEKAVLLWTLDPAERDAFLANQATKMLTSNNSIIVEIASTRSPLELLKAKQAYQVRFKKSLEEDVAYHTSGDIRKLLVPLVGIHRYEGDEVNMTLAKSEAKLLHEKIADKAYNHDDLIRIVTTRSKAQLNATLNHYNNEFGNVIDKDLETDSDDEYLKLLRAAIKGLTYPEKYFEELLRLAINKMGTDENALTRVVTTRAEVDLQRIAEEYQRRNSVPLDRAIDKDTSGDYQKILLALMGHDE*