AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1082700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1082700 MtrunA17_Chr7g0270311 97.423 194 5 0 1 194 1 194 1.15e-137 382
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1082700 AT4G01900.1 64.737 190 64 2 2 188 3 192 3.79e-79 234

Find 68 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGGGTTTGTTGAAAA+TGG 0.110086 7_2:-82781454 Msa1082700:intron
GTATTGACTTAATTGAAATT+TGG 0.167379 7_2:+82783159 None:intergenic
AAGCATTTCCGTTGCTTCTT+AGG 0.201591 7_2:+82782947 None:intergenic
AAAGATTAGCATTTGCAATT+TGG 0.268026 7_2:-82779992 Msa1082700:three_prime_UTR
GAGCAGGCTGAGAGGATGGC+TGG 0.291038 7_2:-82780046 Msa1082700:CDS
TGTCAAGGGGTTTGGTGCTC+AGG 0.292542 7_2:-82781406 Msa1082700:CDS
GGCAGTGATAAACAAAATTA+TGG 0.303869 7_2:-82780464 Msa1082700:CDS
TATTGACTTAATTGAAATTT+GGG 0.311098 7_2:+82783160 None:intergenic
ACTTTGTAAAACTTGGATTC+AGG 0.343647 7_2:+82782800 None:intergenic
ATGACGCTGAAGCTTGAAAA+AGG 0.344708 7_2:+82783009 None:intergenic
GGCTTCAACTTTGTAAAACT+TGG 0.345055 7_2:+82782793 None:intergenic
TTGAAGGGTTTGTTGAAAAT+GGG 0.351307 7_2:-82781453 Msa1082700:intron
ATTAGAGCTCAAAACCTTCC+TGG 0.371130 7_2:-82782910 Msa1082700:intron
ATTATGGAGACGGCAAGAAC+TGG 0.371236 7_2:-82780448 Msa1082700:CDS
ATTCTTATTACATCAGATAC+AGG 0.377029 7_2:+82780184 None:intergenic
ATCATTGTTATCAATTCTAC+AGG 0.382470 7_2:+82779951 None:intergenic
TTGTGAGAAGTAAGAAGAAA+TGG 0.384017 7_2:-82783094 Msa1082700:exon
AAAAGTATTAGGAATGGGTT+TGG 0.394732 7_2:-82779674 Msa1082700:three_prime_UTR
GTATCTGATGTCAAGGGGTT+TGG 0.410939 7_2:-82781414 Msa1082700:CDS
GCAGGCTGAGAGGATGGCTG+GGG 0.412639 7_2:-82780044 Msa1082700:CDS
CTCAGGTGAGCGTGGGGAGC+AGG 0.426072 7_2:-82780062 Msa1082700:intron
AGCGTCATTCGCAAGCGTTT+CGG 0.427268 7_2:-82782994 Msa1082700:CDS
TTCAAACCGTTGAACACGTT+CGG 0.428080 7_2:+82783057 None:intergenic
ACGGCAAGAACTGGGGAGAT+TGG 0.438088 7_2:-82780439 Msa1082700:CDS
TTAATAAAAGTATTAGGAAT+GGG 0.441206 7_2:-82779679 Msa1082700:three_prime_UTR
GTCAAGGGGTTTGGTGCTCA+GGG 0.446794 7_2:-82781405 Msa1082700:CDS
GGGTGGCTCAAAAGAGAGGC+AGG 0.447663 7_2:-82781385 Msa1082700:CDS
TTTAATAAAAGTATTAGGAA+TGG 0.453532 7_2:-82779680 Msa1082700:three_prime_UTR
ACAAAGTTGAAGCCATTCTC+AGG 0.467569 7_2:-82782784 Msa1082700:intron
GAGAATCCCTCAGGTTTCTT+CGG 0.476128 7_2:-82782672 Msa1082700:intron
CAAAGTTAAAATGGAAATAG+TGG 0.476633 7_2:-82780910 Msa1082700:CDS
AGCAGGCTGAGAGGATGGCT+GGG 0.478955 7_2:-82780045 Msa1082700:CDS
CTAGCGAGCTAGTGAGAGTT+CGG 0.509005 7_2:-82783131 Msa1082700:five_prime_UTR
AAGAAGCAACGGAAATGCTT+CGG 0.517017 7_2:-82782944 Msa1082700:CDS
GCGAAACCGAACGTGTTCAA+CGG 0.522571 7_2:-82783063 Msa1082700:CDS
TTATGGAGACGGCAAGAACT+GGG 0.538464 7_2:-82780447 Msa1082700:CDS
TGGGGAGCAGGCTGAGAGGA+TGG 0.538555 7_2:-82780050 Msa1082700:CDS
CAGGCCATGGAGAATCCCTC+AGG 0.546227 7_2:-82782681 Msa1082700:CDS
TTGTTGAAAATGGGAATTCG+TGG 0.546383 7_2:-82781444 Msa1082700:CDS
TGTCACTGTATCTGATGTCA+AGG 0.549422 7_2:-82781421 Msa1082700:CDS
TACGAATTCTCAGGTGAGCG+TGG 0.552687 7_2:-82780070 Msa1082700:intron
GTCACTGTATCTGATGTCAA+GGG 0.559409 7_2:-82781420 Msa1082700:CDS
CAGGCTGAGAGGATGGCTGG+GGG 0.559678 7_2:-82780043 Msa1082700:CDS
ACGAATTCTCAGGTGAGCGT+GGG 0.562826 7_2:-82780069 Msa1082700:intron
GATAAACAAAATTATGGAGA+CGG 0.573347 7_2:-82780458 Msa1082700:CDS
AGAGTGTTATAACCTGAGAA+TGG 0.584237 7_2:+82782772 None:intergenic
AAGGGGTTTGGTGCTCAGGG+TGG 0.584971 7_2:-82781402 Msa1082700:CDS
TCATTGTTATCAATTCTACA+GGG 0.585106 7_2:+82779952 None:intergenic
CTCAGGGTGGCTCAAAAGAG+AGG 0.595032 7_2:-82781389 Msa1082700:CDS
AGAACTGGGGAGATTGGTGA+TGG 0.606984 7_2:-82780433 Msa1082700:CDS
GGTGGCTCAAAAGAGAGGCA+GGG 0.611036 7_2:-82781384 Msa1082700:CDS
GAAACCTGAGGGATTCTCCA+TGG 0.612179 7_2:+82782677 None:intergenic
AATAGTGGTGAGAAAAGACC+AGG 0.614772 7_2:-82780895 Msa1082700:intron
AAAAGGAAATCGAACCAGGA+AGG 0.619778 7_2:+82782896 None:intergenic
CGAATTCTCAGGTGAGCGTG+GGG 0.630631 7_2:-82780068 Msa1082700:intron
TCACTGTATCTGATGTCAAG+GGG 0.633367 7_2:-82781419 Msa1082700:CDS
TTCTTATTACATCAGATACA+GGG 0.641858 7_2:+82780185 None:intergenic
AATGTGGTCCTAAGAAGCAA+CGG 0.643539 7_2:-82782955 Msa1082700:CDS
GATGTAATAAGAATCCGCAC+AGG 0.649812 7_2:-82780175 Msa1082700:intron
AGCGTGGGGAGCAGGCTGAG+AGG 0.654625 7_2:-82780054 Msa1082700:CDS
TATGGAGACGGCAAGAACTG+GGG 0.666410 7_2:-82780446 Msa1082700:CDS
CATTGTTATCAATTCTACAG+GGG 0.667981 7_2:+82779953 None:intergenic
GGCTCAAAAGAGAGGCAGGG+AGG 0.670235 7_2:-82781381 Msa1082700:intron
GTATTACCGAAGAAACCTGA+GGG 0.672298 7_2:+82782666 None:intergenic
GGAGCAAATGGTTACCTGTG+CGG 0.676931 7_2:+82780161 None:intergenic
TGTATTACCGAAGAAACCTG+AGG 0.679907 7_2:+82782665 None:intergenic
AGATTCTTCTCATCGCAATG+TGG 0.698371 7_2:-82782971 Msa1082700:CDS
TACAGGGGAAAAGAGAACAG+AGG 0.739593 7_2:+82779968 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAGTTAATAAATTAATTAT+TGG - chr7_2:82780457-82780476 Msa1082700:CDS 10.0%
!!! TTTTTTATTGTAAAATTTGA+AGG - chr7_2:82781347-82781366 Msa1082700:intron 10.0%
!!! TTTTTATTGTAAAATTTGAA+GGG - chr7_2:82781348-82781367 Msa1082700:intron 10.0%
!! TTTCATAATAAAATAGTTTA+AGG - chr7_2:82782503-82782522 Msa1082700:intron 10.0%
!!! CATAATTTTTTTTTTTTGCA+TGG - chr7_2:82780185-82780204 Msa1082700:CDS 15.0%
!! TCAGTCAATAAATTAATTAT+TGG - chr7_2:82780429-82780448 Msa1082700:CDS 15.0%
!!! TAGTTTTATCATTAATAGAA+TGG - chr7_2:82781168-82781187 Msa1082700:intron 15.0%
!!! AGTTTTATCATTAATAGAAT+GGG - chr7_2:82781169-82781188 Msa1082700:intron 15.0%
!!! TGTTAATTGTTTAGAATATT+GGG + chr7_2:82782006-82782025 None:intergenic 15.0%
!!! ATGTTAATTGTTTAGAATAT+TGG + chr7_2:82782007-82782026 None:intergenic 15.0%
!!! ATTTTGTTTGTAATTAAAAG+TGG + chr7_2:82782282-82782301 None:intergenic 15.0%
!! AGATTCTAATAAAAAATATC+AGG + chr7_2:82782484-82782503 None:intergenic 15.0%
!! ATAATAAAATAGTTTAAGGA+GGG - chr7_2:82782507-82782526 Msa1082700:intron 15.0%
!!! AAAAATTTAGTTCATGTTTT+CGG - chr7_2:82783045-82783064 Msa1082700:CDS 15.0%
!!! TTTAATAAAAGTATTAGGAA+TGG - chr7_2:82783136-82783155 Msa1082700:five_prime_UTR 15.0%
!!! TTAATAAAAGTATTAGGAAT+GGG - chr7_2:82783137-82783156 Msa1082700:five_prime_UTR 15.0%
!!! TCTTGTTATTTTCACTAAAT+CGG - chr7_2:82780225-82780244 Msa1082700:intron 20.0%
!! TAACTGTTATGTTAATTAGT+TGG - chr7_2:82780490-82780509 Msa1082700:intron 20.0%
!! AATAGTTTAGTGATGAAATA+TGG + chr7_2:82781583-82781602 None:intergenic 20.0%
!! AAAGTTACAAACATAAAACA+CGG + chr7_2:82781712-82781731 None:intergenic 20.0%
!!! AATTACATTTTTCCTTCATT+TGG - chr7_2:82781760-82781779 Msa1082700:intron 20.0%
!!! ATTACATTTTTCCTTCATTT+GGG - chr7_2:82781761-82781780 Msa1082700:intron 20.0%
!!! TATATATCATGCATTTTTTC+AGG - chr7_2:82782325-82782344 Msa1082700:intron 20.0%
!! CATAATAAAATAGTTTAAGG+AGG - chr7_2:82782506-82782525 Msa1082700:intron 20.0%
!! TAAAACTACTAAACTCAATT+TGG - chr7_2:82782566-82782585 Msa1082700:intron 20.0%
! GCAAATTCAGTTAACTATTA+TGG - chr7_2:82780309-82780328 Msa1082700:intron 25.0%
!! CTAAATTCTGTTAGTGTTTT+TGG - chr7_2:82780343-82780362 Msa1082700:intron 25.0%
! TAACTAACACTGTTAATCTA+AGG + chr7_2:82780396-82780415 None:intergenic 25.0%
! GTTAGTATTTATAGCCATAA+GGG - chr7_2:82780652-82780671 Msa1082700:intron 25.0%
! TTAGTATTTATAGCCATAAG+GGG - chr7_2:82780653-82780672 Msa1082700:intron 25.0%
!!! TCTTTTTTTCTACTTCCAAA+AGG - chr7_2:82781054-82781073 Msa1082700:intron 25.0%
!! CTATTGAAAATGAAACCTTT+TGG + chr7_2:82781072-82781091 None:intergenic 25.0%
!! TATTGCTACAAATACTTTTG+TGG - chr7_2:82781122-82781141 Msa1082700:intron 25.0%
!! CATATATGTATTTTTCATCC+AGG - chr7_2:82781294-82781313 Msa1082700:intron 25.0%
! AAATTCAGTATATTAGCAGA+AGG + chr7_2:82781330-82781349 None:intergenic 25.0%
! TTTGTCTTAGAAGTTAACAA+GGG + chr7_2:82781508-82781527 None:intergenic 25.0%
! ATTTGTCTTAGAAGTTAACA+AGG + chr7_2:82781509-82781528 None:intergenic 25.0%
! ACAAATTCATGTTAAGAGTT+TGG - chr7_2:82781523-82781542 Msa1082700:intron 25.0%
!!! AAAGAGCAAGTGTTTTTTTA+AGG + chr7_2:82781634-82781653 None:intergenic 25.0%
!!! AAATTTTAGCGCACAAATTT+AGG - chr7_2:82781665-82781684 Msa1082700:intron 25.0%
!! TTTTGTTGCCAAAGTTAAAA+TGG - chr7_2:82781897-82781916 Msa1082700:intron 25.0%
!!! CACTATTTCCATTTTAACTT+TGG + chr7_2:82781908-82781927 None:intergenic 25.0%
! CAAAGTTAAAATGGAAATAG+TGG - chr7_2:82781906-82781925 Msa1082700:intron 25.0%
! GATAAACAAAATTATGGAGA+CGG - chr7_2:82782358-82782377 Msa1082700:intron 25.0%
! TGGAAATAAATTATACGTCA+TGG - chr7_2:82782437-82782456 Msa1082700:intron 25.0%
! TTCTTATTACATCAGATACA+GGG + chr7_2:82782634-82782653 None:intergenic 25.0%
! ATTCTTATTACATCAGATAC+AGG + chr7_2:82782635-82782654 None:intergenic 25.0%
!!! TATGTTTTTAGAGAATTCAC+TGG + chr7_2:82782679-82782698 None:intergenic 25.0%
!!! AGTTTTAAATACGAATTCTC+AGG - chr7_2:82782737-82782756 Msa1082700:intron 25.0%
! AAAGATTAGCATTTGCAATT+TGG - chr7_2:82782824-82782843 Msa1082700:intron 25.0%
! TCATTGTTATCAATTCTACA+GGG + chr7_2:82782867-82782886 None:intergenic 25.0%
! ATCATTGTTATCAATTCTAC+AGG + chr7_2:82782868-82782887 None:intergenic 25.0%
TTGTGAGAAGTAAGAAGAAA+TGG - chr7_2:82779722-82779741 Msa1082700:intron 30.0%
!!! AGGTTTTGAGCTCTAATTTT+GGG + chr7_2:82779903-82779922 None:intergenic 30.0%
!!! AAGGTTTTGAGCTCTAATTT+TGG + chr7_2:82779904-82779923 None:intergenic 30.0%
GATGAACATAGCAATAGAAA+AGG + chr7_2:82779940-82779959 None:intergenic 30.0%
ACTTTGTAAAACTTGGATTC+AGG + chr7_2:82780019-82780038 None:intergenic 30.0%
TTCTTGACATTGTTTACAAG+TGG - chr7_2:82780273-82780292 Msa1082700:intron 30.0%
GGTTAGTATTTATAGCCATA+AGG - chr7_2:82780651-82780670 Msa1082700:intron 30.0%
TAGTATTTATAGCCATAAGG+GGG - chr7_2:82780654-82780673 Msa1082700:intron 30.0%
GTCGTATTGTTCTTAATGAA+GGG - chr7_2:82780974-82780993 Msa1082700:intron 30.0%
! TTCAATAGATTTTCAGCAGT+TGG - chr7_2:82781084-82781103 Msa1082700:intron 30.0%
AAGTACAAACTCAAAAGTCA+TGG + chr7_2:82781219-82781238 None:intergenic 30.0%
!! AATAATTGGTTTGGTCAATG+CGG - chr7_2:82781269-82781288 Msa1082700:intron 30.0%
!! TTTGAAGGGTTTGTTGAAAA+TGG - chr7_2:82781362-82781381 Msa1082700:intron 30.0%
!! TTGAAGGGTTTGTTGAAAAT+GGG - chr7_2:82781363-82781382 Msa1082700:intron 30.0%
! ATAGAGCACTAAATTTAGGT+CGG + chr7_2:82781482-82781501 None:intergenic 30.0%
! GTGAATAGAGCACTAAATTT+AGG + chr7_2:82781486-82781505 None:intergenic 30.0%
AATTCATGTTAAGAGTTTGG+AGG - chr7_2:82781526-82781545 Msa1082700:intron 30.0%
!! ATTTTTCCTTCATTTGGGAT+TGG - chr7_2:82781766-82781785 Msa1082700:intron 30.0%
!!! GTTTTTTTGGCTAGATCTAT+TGG - chr7_2:82782063-82782082 Msa1082700:intron 30.0%
!! GTAAAGCACAAACTTTTTCT+TGG - chr7_2:82782091-82782110 Msa1082700:intron 30.0%
TATGATAAGACCATTACCAT+TGG - chr7_2:82782115-82782134 Msa1082700:intron 30.0%
GGCAGTGATAAACAAAATTA+TGG - chr7_2:82782352-82782371 Msa1082700:intron 30.0%
! TGATGGCAAAATTTTCTGTA+AGG - chr7_2:82782400-82782419 Msa1082700:intron 30.0%
TTATTTCCAGCAAAAGATGT+TGG + chr7_2:82782426-82782445 None:intergenic 30.0%
CATTGTTATCAATTCTACAG+GGG + chr7_2:82782866-82782885 None:intergenic 30.0%
! ACGAAAAATGCTGACTAAAT+TGG + chr7_2:82783019-82783038 None:intergenic 30.0%
!! AAAAGTATTAGGAATGGGTT+TGG - chr7_2:82783142-82783161 Msa1082700:five_prime_UTR 30.0%
ATAGAAAAGGAAATCGAACC+AGG + chr7_2:82779927-82779946 None:intergenic 35.0%
GGCTTCAACTTTGTAAAACT+TGG + chr7_2:82780026-82780045 None:intergenic 35.0%
! AGAGTGTTATAACCTGAGAA+TGG + chr7_2:82780047-82780066 None:intergenic 35.0%
GCTTATGTTTGAACATGAAC+AGG - chr7_2:82780116-82780135 Msa1082700:intron 35.0%
AAACAATGTCAAGAAACCAC+AGG + chr7_2:82780268-82780287 None:intergenic 35.0%
TTGACATTGTTTACAAGTGG+TGG - chr7_2:82780276-82780295 Msa1082700:intron 35.0%
TGAGTACGATTTATCAGACT+AGG - chr7_2:82780585-82780604 Msa1082700:intron 35.0%
CAGACTAGGTTAATCTGTTA+AGG - chr7_2:82780599-82780618 Msa1082700:intron 35.0%
TTGGATAAACCCTCTATTCT+AGG - chr7_2:82780677-82780696 Msa1082700:intron 35.0%
ACTAGGATAGGATAACTATC+AGG - chr7_2:82780709-82780728 Msa1082700:intron 35.0%
CTAGGATAGGATAACTATCA+GGG - chr7_2:82780710-82780729 Msa1082700:intron 35.0%
!! TGCTTCTAGAATATGCTCAT+TGG - chr7_2:82780741-82780760 Msa1082700:intron 35.0%
TCATTAAGAACAATACGACC+TGG + chr7_2:82780973-82780992 None:intergenic 35.0%
GGTCGTATTGTTCTTAATGA+AGG - chr7_2:82780973-82780992 Msa1082700:intron 35.0%
TGAATGGAATCAATTTGGAC+CGG + chr7_2:82781025-82781044 None:intergenic 35.0%
! AATGGGTTCATTACCCTATT+GGG - chr7_2:82781186-82781205 Msa1082700:intron 35.0%
ACCTTTACCTCTCGAATAAT+TGG - chr7_2:82781255-82781274 Msa1082700:intron 35.0%
ACCAATTATTCGAGAGGTAA+AGG + chr7_2:82781259-82781278 None:intergenic 35.0%
TACCTCTCGAATAATTGGTT+TGG - chr7_2:82781260-82781279 Msa1082700:intron 35.0%
TTGTTGAAAATGGGAATTCG+TGG - chr7_2:82781372-82781391 Msa1082700:intron 35.0%
TACAAACCAATCCCAAATGA+AGG + chr7_2:82781775-82781794 None:intergenic 35.0%
!! TTGGGATTGGTTTGTATACT+TGG - chr7_2:82781779-82781798 Msa1082700:intron 35.0%
! TGACATTTGGTAGTAATCAC+TGG - chr7_2:82781949-82781968 Msa1082700:intron 35.0%
ATGACAATGTCAGTTGTCAA+TGG - chr7_2:82782025-82782044 Msa1082700:intron 35.0%
! ATGTCAGTTGTCAATGGATT+TGG - chr7_2:82782031-82782050 Msa1082700:intron 35.0%
! TGTCAGTTGTCAATGGATTT+GGG - chr7_2:82782032-82782051 Msa1082700:intron 35.0%
!!! TTGGGTCTTCTCAGTTTTTT+TGG - chr7_2:82782050-82782069 Msa1082700:intron 35.0%
!!! TCATGCATTTTTTCAGGTTG+AGG - chr7_2:82782331-82782350 Msa1082700:intron 35.0%
TATATATGTGTGTGTGTGTG+TGG - chr7_2:82783073-82783092 Msa1082700:CDS 35.0%
TTCAAACCGTTGAACACGTT+CGG + chr7_2:82779762-82779781 None:intergenic 40.0%
ATGACGCTGAAGCTTGAAAA+AGG + chr7_2:82779810-82779829 None:intergenic 40.0%
AGATTCTTCTCATCGCAATG+TGG - chr7_2:82779845-82779864 Msa1082700:three_prime_UTR 40.0%
AATGTGGTCCTAAGAAGCAA+CGG - chr7_2:82779861-82779880 Msa1082700:three_prime_UTR 40.0%
AAGCATTTCCGTTGCTTCTT+AGG + chr7_2:82779872-82779891 None:intergenic 40.0%
AAGAAGCAACGGAAATGCTT+CGG - chr7_2:82779872-82779891 Msa1082700:three_prime_UTR 40.0%
ATTAGAGCTCAAAACCTTCC+TGG - chr7_2:82779906-82779925 Msa1082700:three_prime_UTR 40.0%
AAAAGGAAATCGAACCAGGA+AGG + chr7_2:82779923-82779942 None:intergenic 40.0%
ACAAAGTTGAAGCCATTCTC+AGG - chr7_2:82780032-82780051 Msa1082700:CDS 40.0%
GTATTACCGAAGAAACCTGA+GGG + chr7_2:82780153-82780172 None:intergenic 40.0%
TGTATTACCGAAGAAACCTG+AGG + chr7_2:82780154-82780173 None:intergenic 40.0%
TAACCTTGAGAGCTTTCTCA+AGG + chr7_2:82780636-82780655 None:intergenic 40.0%
ATTTATAGCCATAAGGGGGT+TGG - chr7_2:82780658-82780677 Msa1082700:intron 40.0%
AACTAAGCGCCTAGAATAGA+GGG + chr7_2:82780689-82780708 None:intergenic 40.0%
TAACTAAGCGCCTAGAATAG+AGG + chr7_2:82780690-82780709 None:intergenic 40.0%
ATTCTAGGCGCTTAGTTACT+AGG - chr7_2:82780692-82780711 Msa1082700:intron 40.0%
! CGAAGTGCTTTAGTCTAGAT+AGG - chr7_2:82780909-82780928 Msa1082700:CDS 40.0%
GAATGGAATCAATTTGGACC+GGG + chr7_2:82781024-82781043 None:intergenic 40.0%
GACGCTGAATGGAATCAATT+TGG + chr7_2:82781030-82781049 None:intergenic 40.0%
AAAAAGAGAGAGACGCTGAA+TGG + chr7_2:82781041-82781060 None:intergenic 40.0%
! GAATGGGTTCATTACCCTAT+TGG - chr7_2:82781185-82781204 Msa1082700:intron 40.0%
!! ATTCGAGAGGTAAAGGTACT+GGG + chr7_2:82781252-82781271 None:intergenic 40.0%
! TATTCGAGAGGTAAAGGTAC+TGG + chr7_2:82781253-82781272 None:intergenic 40.0%
GACCAAACCAATTATTCGAG+AGG + chr7_2:82781265-82781284 None:intergenic 40.0%
GTATATTAGCAGAAGGCCAA+GGG + chr7_2:82781323-82781342 None:intergenic 40.0%
AGTATATTAGCAGAAGGCCA+AGG + chr7_2:82781324-82781343 None:intergenic 40.0%
TGTCACTGTATCTGATGTCA+AGG - chr7_2:82781395-82781414 Msa1082700:CDS 40.0%
GTCACTGTATCTGATGTCAA+GGG - chr7_2:82781396-82781415 Msa1082700:CDS 40.0%
TCACTGTATCTGATGTCAAG+GGG - chr7_2:82781397-82781416 Msa1082700:CDS 40.0%
CATAAAACACGGCTGAAGTT+GGG + chr7_2:82781701-82781720 None:intergenic 40.0%
ACATAAAACACGGCTGAAGT+TGG + chr7_2:82781702-82781721 None:intergenic 40.0%
GAAGAATACACCATCAGTGA+AGG + chr7_2:82781851-82781870 None:intergenic 40.0%
! ACTGATGGTGTATTCTTCAC+AGG - chr7_2:82781853-82781872 Msa1082700:intron 40.0%
AATAGTGGTGAGAAAAGACC+AGG - chr7_2:82781921-82781940 Msa1082700:intron 40.0%
AACGTAGGAACCAATGGTAA+TGG + chr7_2:82782128-82782147 None:intergenic 40.0%
GTCATCTATGAGTTCAGAAG+AGG + chr7_2:82782156-82782175 None:intergenic 40.0%
! AACCGTTTTCTTCAGTTCAG+TGG - chr7_2:82782219-82782238 Msa1082700:intron 40.0%
CACCACTGAACTGAAGAAAA+CGG + chr7_2:82782224-82782243 None:intergenic 40.0%
GATGTAATAAGAATCCGCAC+AGG - chr7_2:82782641-82782660 Msa1082700:intron 40.0%
AGAGAATTCACTGGAGCAAA+TGG + chr7_2:82782670-82782689 None:intergenic 40.0%
GTTTGAACATGAACAGGCCA+TGG - chr7_2:82780122-82780141 Msa1082700:intron 45.0%
GAGAATCCCTCAGGTTTCTT+CGG - chr7_2:82780144-82780163 Msa1082700:intron 45.0%
TGCATTGTCTTTGATGCCTG+TGG - chr7_2:82780249-82780268 Msa1082700:intron 45.0%
TTGAGAGCTTTCTCAAGGCA+TGG + chr7_2:82780631-82780650 None:intergenic 45.0%
ATGCCTTGAGAAAGCTCTCA+AGG - chr7_2:82780630-82780649 Msa1082700:intron 45.0%
AGGCGCTTAGTTACTAGGAT+AGG - chr7_2:82780697-82780716 Msa1082700:intron 45.0%
AGCTAAGGCGACGTCTTTAT+AGG + chr7_2:82780772-82780791 None:intergenic 45.0%
ACCATAAGCGCCCTTCTAAA+GGG + chr7_2:82780803-82780822 None:intergenic 45.0%
GTCACTTGAGCCCTTATGAA+TGG - chr7_2:82780821-82780840 Msa1082700:intron 45.0%
GGACACAACGCCATTCATAA+GGG + chr7_2:82780834-82780853 None:intergenic 45.0%
AGGACACAACGCCATTCATA+AGG + chr7_2:82780835-82780854 None:intergenic 45.0%
ATGGCGTTGTGTCCTTTATC+CGG - chr7_2:82780840-82780859 Msa1082700:intron 45.0%
TTCACGTGTTTCCCTTGCTT+CGG - chr7_2:82780941-82780960 Msa1082700:CDS 45.0%
TCATGGATCTCGTCCCAATA+GGG + chr7_2:82781202-82781221 None:intergenic 45.0%
!! TTCGAGAGGTAAAGGTACTG+GGG + chr7_2:82781251-82781270 None:intergenic 45.0%
! TTTTTCATCCAGGAAGCCCT+TGG - chr7_2:82781304-82781323 Msa1082700:intron 45.0%
GTATCTGATGTCAAGGGGTT+TGG - chr7_2:82781402-82781421 Msa1082700:CDS 45.0%
ACATCCTTGTCCTTCACTGA+TGG - chr7_2:82781838-82781857 Msa1082700:intron 45.0%
TACACCATCAGTGAAGGACA+AGG + chr7_2:82781845-82781864 None:intergenic 45.0%
! AGACCAGGTGTGTTGACATT+TGG - chr7_2:82781936-82781955 Msa1082700:intron 45.0%
CTACCAAATGTCAACACACC+TGG + chr7_2:82781942-82781961 None:intergenic 45.0%
GCTGAAAACGTAGGAACCAA+TGG + chr7_2:82782134-82782153 None:intergenic 45.0%
TCAGAAGAGGCTGAAAACGT+AGG + chr7_2:82782143-82782162 None:intergenic 45.0%
ATTATGGAGACGGCAAGAAC+TGG - chr7_2:82782368-82782387 Msa1082700:intron 45.0%
TTATGGAGACGGCAAGAACT+GGG - chr7_2:82782369-82782388 Msa1082700:intron 45.0%
! GTAAGGCCAACATCTTTTGC+TGG - chr7_2:82782417-82782436 Msa1082700:intron 45.0%
TACAGGGGAAAAGAGAACAG+AGG + chr7_2:82782851-82782870 None:intergenic 45.0%
!! AAAAAAAAAAATTATGAAAA+AGG + chr7_2:82780181-82780200 None:intergenic 5.0%
!!! TTTTTTTTAATAAAAGTATT+AGG - chr7_2:82783131-82783150 Msa1082700:five_prime_UTR 5.0%
CTAGCGAGCTAGTGAGAGTT+CGG - chr7_2:82779685-82779704 Msa1082700:three_prime_UTR 50.0%
GCGAAACCGAACGTGTTCAA+CGG - chr7_2:82779753-82779772 Msa1082700:intron 50.0%
AGCGTCATTCGCAAGCGTTT+CGG - chr7_2:82779822-82779841 Msa1082700:three_prime_UTR 50.0%
GAAACCTGAGGGATTCTCCA+TGG + chr7_2:82780142-82780161 None:intergenic 50.0%
GGGTTTATCCAACCCCCTTA+TGG + chr7_2:82780669-82780688 None:intergenic 50.0%
TAAAGGGCCGAAGCAAGCTA+AGG + chr7_2:82780787-82780806 None:intergenic 50.0%
! CTTGCTTCGGCCCTTTAGAA+GGG - chr7_2:82780790-82780809 Msa1082700:intron 50.0%
GACCATAAGCGCCCTTCTAA+AGG + chr7_2:82780804-82780823 None:intergenic 50.0%
TGGCGTTGTGTCCTTTATCC+GGG - chr7_2:82780841-82780860 Msa1082700:intron 50.0%
! GTCCTTTATCCGGGTTTTCC+CGG - chr7_2:82780850-82780869 Msa1082700:intron 50.0%
AGAACAATACGACCTGGAGC+AGG + chr7_2:82780967-82780986 None:intergenic 50.0%
CAATTTGGACCGGGAAAACC+CGG + chr7_2:82781015-82781034 None:intergenic 50.0%
GTCATGGATCTCGTCCCAAT+AGG + chr7_2:82781203-82781222 None:intergenic 50.0%
AGCGCACAAATTTAGGCCTG+TGG - chr7_2:82781672-82781691 Msa1082700:intron 50.0%
AAAACACGGCTGAAGTTGGG+TGG + chr7_2:82781698-82781717 None:intergenic 50.0%
TATGGAGACGGCAAGAACTG+GGG - chr7_2:82782370-82782389 Msa1082700:intron 50.0%
AGAACTGGGGAGATTGGTGA+TGG - chr7_2:82782383-82782402 Msa1082700:intron 50.0%
GGAGCAAATGGTTACCTGTG+CGG + chr7_2:82782658-82782677 None:intergenic 50.0%
TACGAATTCTCAGGTGAGCG+TGG - chr7_2:82782746-82782765 Msa1082700:intron 50.0%
ACGAATTCTCAGGTGAGCGT+GGG - chr7_2:82782747-82782766 Msa1082700:intron 50.0%
!! GACGTCGCCTTAGCTTGCTT+CGG - chr7_2:82780777-82780796 Msa1082700:intron 55.0%
GCTTGCTTCGGCCCTTTAGA+AGG - chr7_2:82780789-82780808 Msa1082700:intron 55.0%
!! GCCCTTTAGAAGGGCGCTTA+TGG - chr7_2:82780799-82780818 Msa1082700:intron 55.0%
CACCGGGAAAACCCGGATAA+AGG + chr7_2:82780855-82780874 None:intergenic 55.0%
TTGTCCCAAGGCTCGTGCTT+GGG + chr7_2:82780887-82780906 None:intergenic 55.0%
AAGCACTTCGCCTTGTCCCA+AGG + chr7_2:82780899-82780918 None:intergenic 55.0%
!! TGTCAAGGGGTTTGGTGCTC+AGG - chr7_2:82781410-82781429 Msa1082700:CDS 55.0%
!! GTCAAGGGGTTTGGTGCTCA+GGG - chr7_2:82781411-82781430 Msa1082700:CDS 55.0%
CTCAGGGTGGCTCAAAAGAG+AGG - chr7_2:82781427-82781446 Msa1082700:CDS 55.0%
GGTGGCTCAAAAGAGAGGCA+GGG - chr7_2:82781432-82781451 Msa1082700:CDS 55.0%
GAGAGGCAGGGAGGTAAGTA+CGG - chr7_2:82781444-82781463 Msa1082700:CDS 55.0%
ACGGCAAGAACTGGGGAGAT+TGG - chr7_2:82782377-82782396 Msa1082700:intron 55.0%
CGAATTCTCAGGTGAGCGTG+GGG - chr7_2:82782748-82782767 Msa1082700:intron 55.0%
CAGGCCATGGAGAATCCCTC+AGG - chr7_2:82780135-82780154 Msa1082700:intron 60.0%
GCTTGTGCACCGGGAAAACC+CGG + chr7_2:82780862-82780881 None:intergenic 60.0%
TGTCCCAAGGCTCGTGCTTG+GGG + chr7_2:82780886-82780905 None:intergenic 60.0%
CTTGTCCCAAGGCTCGTGCT+TGG + chr7_2:82780888-82780907 None:intergenic 60.0%
CAAGCACGAGCCTTGGGACA+AGG - chr7_2:82780886-82780905 Msa1082700:intron 60.0%
ACCGGGAAAACCCGGATACG+GGG + chr7_2:82781007-82781026 None:intergenic 60.0%
GACCGGGAAAACCCGGATAC+GGG + chr7_2:82781008-82781027 None:intergenic 60.0%
GGACCGGGAAAACCCGGATA+CGG + chr7_2:82781009-82781028 None:intergenic 60.0%
!! AAGGGGTTTGGTGCTCAGGG+TGG - chr7_2:82781414-82781433 Msa1082700:CDS 60.0%
GGGTGGCTCAAAAGAGAGGC+AGG - chr7_2:82781431-82781450 Msa1082700:CDS 60.0%
GGCTCAAAAGAGAGGCAGGG+AGG - chr7_2:82781435-82781454 Msa1082700:CDS 60.0%
AGCAGGCTGAGAGGATGGCT+GGG - chr7_2:82782771-82782790 Msa1082700:intron 60.0%
TGCTTGGGGGGCTTGTGCAC+CGG + chr7_2:82780872-82780891 None:intergenic 65.0%
TCCCAAGGCTCGTGCTTGGG+GGG + chr7_2:82780884-82780903 None:intergenic 65.0%
GTCCCAAGGCTCGTGCTTGG+GGG + chr7_2:82780885-82780904 None:intergenic 65.0%
CCTGGAGCAGGCCGAAGCAA+GGG + chr7_2:82780955-82780974 None:intergenic 65.0%
ACCTGGAGCAGGCCGAAGCA+AGG + chr7_2:82780956-82780975 None:intergenic 65.0%
!! AGGGCACTGAGCCCCGTATC+CGG - chr7_2:82780993-82781012 Msa1082700:intron 65.0%
! GCCCCGTATCCGGGTTTTCC+CGG - chr7_2:82781003-82781022 Msa1082700:intron 65.0%
GCAGAAGGCCAAGGGCTTCC+TGG + chr7_2:82781315-82781334 None:intergenic 65.0%
GGCTGAAGTTGGGTGGCCAC+AGG + chr7_2:82781691-82781710 None:intergenic 65.0%
TGGGGAGCAGGCTGAGAGGA+TGG - chr7_2:82782766-82782785 Msa1082700:intron 65.0%
GAGCAGGCTGAGAGGATGGC+TGG - chr7_2:82782770-82782789 Msa1082700:intron 65.0%
GCAGGCTGAGAGGATGGCTG+GGG - chr7_2:82782772-82782791 Msa1082700:intron 65.0%
CAGGCTGAGAGGATGGCTGG+GGG - chr7_2:82782773-82782792 Msa1082700:intron 65.0%
GCTTGGGGGGCTTGTGCACC+GGG + chr7_2:82780871-82780890 None:intergenic 70.0%
AGCCCCCCAAGCACGAGCCT+TGG - chr7_2:82780879-82780898 Msa1082700:intron 70.0%
GCCCCCCAAGCACGAGCCTT+GGG - chr7_2:82780880-82780899 Msa1082700:intron 70.0%
CCCTTGCTTCGGCCTGCTCC+AGG - chr7_2:82780952-82780971 Msa1082700:intron 70.0%
!! GGGCACTGAGCCCCGTATCC+GGG - chr7_2:82780994-82781013 Msa1082700:intron 70.0%
CTCAGGTGAGCGTGGGGAGC+AGG - chr7_2:82782754-82782773 Msa1082700:intron 70.0%
AGCGTGGGGAGCAGGCTGAG+AGG - chr7_2:82782762-82782781 Msa1082700:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 82779658 82783180 82779658 ID=Msa1082700;Name=Msa1082700
chr7_2 mRNA 82779658 82783180 82779658 ID=Msa1082700-mRNA-1;Parent=Msa1082700;Name=Msa1082700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=83|1|1|1|0.87|0.77|9|332|194
chr7_2 exon 82779658 82779736 82779658 ID=Msa1082700-mRNA-1:exon:21536;Parent=Msa1082700-mRNA-1
chr7_2 exon 82779765 82780079 82779765 ID=Msa1082700-mRNA-1:exon:21535;Parent=Msa1082700-mRNA-1
chr7_2 exon 82780176 82780211 82780176 ID=Msa1082700-mRNA-1:exon:21534;Parent=Msa1082700-mRNA-1
chr7_2 exon 82780422 82780491 82780422 ID=Msa1082700-mRNA-1:exon:21533;Parent=Msa1082700-mRNA-1
chr7_2 exon 82780896 82780963 82780896 ID=Msa1082700-mRNA-1:exon:21532;Parent=Msa1082700-mRNA-1
chr7_2 exon 82781382 82781469 82781382 ID=Msa1082700-mRNA-1:exon:21531;Parent=Msa1082700-mRNA-1
chr7_2 exon 82782673 82782700 82782673 ID=Msa1082700-mRNA-1:exon:21530;Parent=Msa1082700-mRNA-1
chr7_2 exon 82782785 82782830 82782785 ID=Msa1082700-mRNA-1:exon:21529;Parent=Msa1082700-mRNA-1
chr7_2 exon 82782911 82783180 82782911 ID=Msa1082700-mRNA-1:exon:21528;Parent=Msa1082700-mRNA-1
chr7_2 five_prime_UTR 82783098 82783180 82783098 ID=Msa1082700-mRNA-1:five_prime_utr;Parent=Msa1082700-mRNA-1
chr7_2 CDS 82782911 82783097 82782911 ID=Msa1082700-mRNA-1:cds;Parent=Msa1082700-mRNA-1
chr7_2 CDS 82782785 82782830 82782785 ID=Msa1082700-mRNA-1:cds;Parent=Msa1082700-mRNA-1
chr7_2 CDS 82782673 82782700 82782673 ID=Msa1082700-mRNA-1:cds;Parent=Msa1082700-mRNA-1
chr7_2 CDS 82781382 82781469 82781382 ID=Msa1082700-mRNA-1:cds;Parent=Msa1082700-mRNA-1
chr7_2 CDS 82780896 82780963 82780896 ID=Msa1082700-mRNA-1:cds;Parent=Msa1082700-mRNA-1
chr7_2 CDS 82780422 82780491 82780422 ID=Msa1082700-mRNA-1:cds;Parent=Msa1082700-mRNA-1
chr7_2 CDS 82780176 82780211 82780176 ID=Msa1082700-mRNA-1:cds;Parent=Msa1082700-mRNA-1
chr7_2 CDS 82780018 82780079 82780018 ID=Msa1082700-mRNA-1:cds;Parent=Msa1082700-mRNA-1
chr7_2 three_prime_UTR 82779765 82780017 82779765 ID=Msa1082700-mRNA-1:three_prime_utr;Parent=Msa1082700-mRNA-1
chr7_2 three_prime_UTR 82779658 82779736 82779658 ID=Msa1082700-mRNA-1:three_prime_utr;Parent=Msa1082700-mRNA-1
Gene Sequence

>Msa1082700

ATGGCTTTGATTGCGAAACCGAACGTGTTCAACGGTTTGAATTTTAATATCAATGAAACTCAAATTCCTTTTTCAAGCTTCAGCGTCATTCGCAAGCGTTTCGGAGATTCTTCTCATCGCAATGTGGTCCTAAGAAGCAACGGAAATGCTTCGGTTCTTCCCAAAATTAGAGCTCAAAACCTTCCTGACTATGTTCCTGAATCCAAGTTTTACAAAGTTGAAGCCATTCTCAGGCCATGGAGAATCCCTCAGGTTTCTTCGGGTTTGTTGAAAATGGGAATTCGTGGTGTCACTGTATCTGATGTCAAGGGGTTTGGTGCTCAGGGTGGCTCAAAAGAGAGGCAGGGAGGCTCTGAATTTTCTGAAGACAATTTTGTTGCCAAAGTTAAAATGGAAATAGTGGTGAGAAAAGACCAGGTTGAGGCAGTGATAAACAAAATTATGGAGACGGCAAGAACTGGGGAGATTGGTGATGGCAAAATTTTCTTGATCCCTGTATCTGATGTAATAAGAATCCGCACAGGTGAGCGTGGGGAGCAGGCTGAGAGGATGGCTGGGGGACTAACTGACGCGTTGTATGTTTGA

Protein sequence

>Msa1082700

MALIAKPNVFNGLNFNINETQIPFSSFSVIRKRFGDSSHRNVVLRSNGNASVLPKIRAQNLPDYVPESKFYKVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKMEIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQAERMAGGLTDALYV*