AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1027870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1027870 MtrunA17_Chr7g0247311 100.000 259 0 0 1 259 1 259 0.0 528
Msa1027870 MtrunA17_Chr5g0405281 95.736 258 11 0 1 258 1 258 0.0 508
Msa1027870 MtrunA17_Chr3g0094604 33.333 186 112 4 29 214 49 222 1.00e-24 99.4
Msa1027870 MtrunA17_CPg0492514 33.333 186 112 4 29 214 49 222 1.06e-24 99.0
Msa1027870 MtrunA17_Chr3g0090924 33.333 186 112 4 29 214 49 222 1.06e-24 99.0
Msa1027870 MtrunA17_Chr4g0015984 33.333 186 112 4 29 214 49 222 1.06e-24 99.0
Msa1027870 MtrunA17_Chr4g0017184 33.333 186 112 4 29 214 56 229 4.70e-24 97.4
Msa1027870 MtrunA17_Chr2g0283311 41.026 117 63 3 98 214 51 161 7.29e-19 82.0
Msa1027870 MtrunA17_Chr4g0024444 29.078 141 93 2 29 169 49 182 4.53e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1027870 AT4G36130.1 93.023 258 18 0 1 258 1 258 0.0 498
Msa1027870 AT2G18020.1 92.636 258 19 0 1 258 1 258 4.17e-175 483
Msa1027870 AT3G51190.1 84.519 239 36 1 1 238 1 239 3.59e-153 427
Msa1027870 ATCG01310.1 32.632 190 108 4 29 214 60 233 1.49e-25 102
Msa1027870 ATCG00830.1 32.632 190 108 4 29 214 60 233 1.49e-25 102
Msa1027870 AT2G44065.3 36.691 139 80 3 97 234 58 189 9.45e-17 77.0
Msa1027870 AT2G44065.1 36.691 139 80 3 97 234 58 189 9.45e-17 77.0
Msa1027870 AT2G44065.2 36.691 139 80 3 97 234 58 189 9.45e-17 77.0

Find 118 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTTCTTTGAAATTCT+TGG 0.197598 7_1:-60413390 Msa1027870:three_prime_UTR
ATTTCTCGCCGCCGCTAAAA+TGG 0.206310 7_1:-60415160 Msa1027870:exon
GACACGAATTAATCAATAAA+TGG 0.230920 7_1:+60413411 None:intergenic
CCAAGAGGACTGGTCGTCTT+AGG 0.241658 7_1:-60413694 Msa1027870:CDS
AATCTAAACTGCTTATTTAT+CGG 0.245431 7_1:+60413643 None:intergenic
GTCACTTGGCACAATCTTCT+TGG 0.305373 7_1:+60413952 None:intergenic
GAACTTGTGGTAAGCATTAC+CGG 0.310318 7_1:+60413868 None:intergenic
AGTTTAACAAGAAACAAAAT+TGG 0.311409 7_1:+60413592 None:intergenic
CTTGGTCAGCCCAAGTTTCA+TGG 0.315017 7_1:-60413372 Msa1027870:three_prime_UTR
GTTTATTTACTGCGGTAAAA+AGG 0.324875 7_1:-60414884 Msa1027870:CDS
CTACTGATTTATTATTTGTT+TGG 0.333730 7_1:-60413471 Msa1027870:three_prime_UTR
CCTCCGTGGGGATGCTCAAC+AGG 0.334759 7_1:+60413797 None:intergenic
GCCATGATTGGGCAAGTTGC+TGG 0.355007 7_1:-60413923 Msa1027870:CDS
GAAGTCGAGGGAACGGAAAC+GGG 0.358567 7_1:+60415062 None:intergenic
CAAGAGGACTGGTCGTCTTA+GGG 0.368154 7_1:-60413693 Msa1027870:CDS
AGTGACTGCAGGGCCATGAT+TGG 0.371357 7_1:-60413935 Msa1027870:CDS
GGAAACGGGCGGGGCCTTTG+CGG 0.378068 7_1:+60415076 None:intergenic
TACCTAGAGGTATCATTATC+GGG 0.400292 7_1:+60414721 None:intergenic
GCTCCTTCTGTTTCTGATAA+CGG 0.408848 7_1:+60414941 None:intergenic
ATACCTAGAGGTATCATTAT+CGG 0.410207 7_1:+60414720 None:intergenic
GGCCTTTGCGGTGGTGTGTG+TGG 0.413149 7_1:+60415088 None:intergenic
GCCTTTGCGGTGGTGTGTGT+GGG 0.415084 7_1:+60415089 None:intergenic
TTACAAATCACAGCACCTTC+AGG 0.419108 7_1:+60414820 None:intergenic
GGGAAGTTCTAACCTAGGTT+TGG 0.425376 7_1:+60415204 None:intergenic
AATTATGCAGCCATGAAACT+TGG 0.428439 7_1:+60413362 None:intergenic
GCTGCTGAGGGTTTGTATAC+CGG 0.439273 7_1:-60414910 Msa1027870:CDS
ACCAGCAACTTGCCCAATCA+TGG 0.440792 7_1:+60413922 None:intergenic
TTTCTCGCCGCCGCTAAAAT+GGG 0.440883 7_1:-60415159 Msa1027870:exon
CGAGGGAACGGAAACGGGCG+GGG 0.441434 7_1:+60415067 None:intergenic
AACTGAGAAGCCAATGTTGA+AGG 0.451466 7_1:-60413891 Msa1027870:CDS
CGTCGGTGACGACTCCTTTG+AGG 0.452604 7_1:+60415022 None:intergenic
GGAGGTAATCACCAACATAT+TGG 0.453068 7_1:-60413776 Msa1027870:CDS
TCGAGGGAACGGAAACGGGC+GGG 0.454887 7_1:+60415066 None:intergenic
ATCAATAAATGGCGTGTCAC+CGG 0.455488 7_1:+60413422 None:intergenic
CTCATTGCTGCCAAGAGGAC+TGG 0.455821 7_1:-60413704 Msa1027870:CDS
GTCAGACGTGATGCTCCTCC+TGG 0.456100 7_1:-60413740 Msa1027870:CDS
CGAAGTCGAGGGAACGGAAA+CGG 0.463299 7_1:+60415061 None:intergenic
GCATTACCGGCCTTCAACAT+TGG 0.473847 7_1:+60413881 None:intergenic
TACAGGATCAAGCTTCCATC+TGG 0.475040 7_1:-60413977 Msa1027870:intron
AGATTGTGCCAAGTGACTGC+AGG 0.475752 7_1:-60413946 Msa1027870:CDS
CCTCTTAGATCTATTCCTGA+AGG 0.484222 7_1:-60414835 Msa1027870:CDS
AACTGTTGGCCTAAGGTTCG+TGG 0.487779 7_1:-60413833 Msa1027870:CDS
TGTCATCCGTGCCCAACGTA+AGG 0.492175 7_1:-60415133 Msa1027870:CDS
CGTTTCCGTTCCCTCGACTT+CGG 0.496555 7_1:-60415060 Msa1027870:CDS
TCCCACACACACCACCGCAA+AGG 0.498632 7_1:-60415090 Msa1027870:CDS
GTGACTGCAGGGCCATGATT+GGG 0.501153 7_1:-60413934 Msa1027870:CDS
GATTTATTATTTGTTTGGAA+TGG 0.507577 7_1:-60413466 Msa1027870:three_prime_UTR
GCTCCTCCTGGACAGAAGGT+TGG 0.508354 7_1:-60413728 Msa1027870:CDS
GGAACCTGCTCCCTTACGTT+GGG 0.510705 7_1:+60415122 None:intergenic
CGTGCCCAACGTAAGGGAGC+AGG 0.512987 7_1:-60415126 Msa1027870:CDS
TCCTCTTCACTCTGAACTTG+TGG 0.513229 7_1:+60413855 None:intergenic
CCTAAGACGACCAGTCCTCT+TGG 0.514272 7_1:+60413694 None:intergenic
ATTGGGCAAGTTGCTGGTGG+TGG 0.517875 7_1:-60413917 Msa1027870:CDS
ATGAGACCAACCTTCTGTCC+AGG 0.521573 7_1:+60413722 None:intergenic
AACGGGCGGGGCCTTTGCGG+TGG 0.529015 7_1:+60415079 None:intergenic
ATCATGGCCCTGCAGTCACT+TGG 0.530422 7_1:+60413938 None:intergenic
GCAAGAGGAGCACCACGACC+TGG 0.531863 7_1:+60414988 None:intergenic
TGCTGTGATTTGTAATGTTG+AGG 0.534385 7_1:-60414812 Msa1027870:CDS
ACCGACGTCATCCACGATCC+AGG 0.536026 7_1:-60415006 Msa1027870:CDS
AGCATCACGTCTGACAGTAC+TGG 0.537912 7_1:+60413748 None:intergenic
TTGGTGATTACCTCCTCCGT+GGG 0.541006 7_1:+60413784 None:intergenic
GTTGAGCATCCCCACGGAGG+AGG 0.543276 7_1:-60413794 Msa1027870:CDS
GTCATCCACGATCCAGGTCG+TGG 0.543374 7_1:-60415000 Msa1027870:CDS
AATAAATCAGTAGGCAGTGA+AGG 0.544552 7_1:+60413481 None:intergenic
CGTTGCGTTCGCCGAAGTCG+AGG 0.545445 7_1:+60415049 None:intergenic
GAAGAGGAACTGTTGGCCTA+AGG 0.546745 7_1:-60413840 Msa1027870:CDS
TCAGTAGGCAGTGAAGGTGC+AGG 0.548307 7_1:+60413487 None:intergenic
TGTAATGTTGAGGGTCATGT+TGG 0.553570 7_1:-60414802 Msa1027870:CDS
CAAACAAATAATAAATCAGT+AGG 0.555872 7_1:+60413472 None:intergenic
TCGTGGTGCTCCTCTTGCTA+AGG 0.557816 7_1:-60414983 Msa1027870:CDS
ATGATTGGGCAAGTTGCTGG+TGG 0.561494 7_1:-60413920 Msa1027870:CDS
CTTCTGTTTCTGATAACGGA+AGG 0.563357 7_1:+60414945 None:intergenic
TGATGCTCCTCCTGGACAGA+AGG 0.566122 7_1:-60413732 Msa1027870:CDS
CGGAACCTGCTCCCTTACGT+TGG 0.568166 7_1:+60415121 None:intergenic
TCTGATAACGGAAGGGATGA+CGG 0.568851 7_1:+60414953 None:intergenic
GCTGTGATTTGTAATGTTGA+GGG 0.572615 7_1:-60414811 Msa1027870:CDS
TTCTGTTTCTGATAACGGAA+GGG 0.573577 7_1:+60414946 None:intergenic
GAACGCAACGGTTACCTCAA+AGG 0.574638 7_1:-60415036 Msa1027870:CDS
GTCGAGGGAACGGAAACGGG+CGG 0.575776 7_1:+60415065 None:intergenic
GTTCGCCGAAGTCGAGGGAA+CGG 0.578749 7_1:+60415055 None:intergenic
CTGCTCCCTTACGTTGGGCA+CGG 0.579845 7_1:+60415127 None:intergenic
GAGAAGCCAATGTTGAAGGC+CGG 0.581735 7_1:-60413887 Msa1027870:CDS
TCAGAGTGAAGAGGAACTGT+TGG 0.582492 7_1:-60413847 Msa1027870:CDS
GTCATCCGTGCCCAACGTAA+GGG 0.585900 7_1:-60415132 Msa1027870:CDS
GTGTGTGTGGGATTTGAAAA+CGG 0.586676 7_1:+60415101 None:intergenic
CCTTCAGGAATAGATCTAAG+AGG 0.588316 7_1:+60414835 None:intergenic
ACCGCAGTAAATAAACTGAC+CGG 0.589138 7_1:+60414891 None:intergenic
GAGCACCACGACCTGGATCG+TGG 0.593947 7_1:+60414995 None:intergenic
ATAGCAACACCACGAACCTT+AGG 0.594313 7_1:+60413824 None:intergenic
CGGCGGCGAGAAATGGAGAA+GGG 0.594510 7_1:+60415169 None:intergenic
ACCGGTCAGTTTATTTACTG+CGG 0.597635 7_1:-60414892 Msa1027870:CDS
ACAATCTTCTTGGCACCAGA+TGG 0.597976 7_1:+60413962 None:intergenic
GATTGTGCCAAGTGACTGCA+GGG 0.598947 7_1:-60413945 Msa1027870:CDS
GGAATGGGAAGTTCTAACCT+AGG 0.608353 7_1:+60415199 None:intergenic
CTCGACTTCGGCGAACGCAA+CGG 0.608500 7_1:-60415048 Msa1027870:CDS
ATTATGCAGCCATGAAACTT+GGG 0.612152 7_1:+60413363 None:intergenic
GTTGCGTTCGCCGAAGTCGA+GGG 0.613842 7_1:+60415050 None:intergenic
AAGAGGACTGGTCGTCTTAG+GGG 0.622786 7_1:-60413692 Msa1027870:CDS
CGGAAAGTCACCTTAGCAAG+AGG 0.624941 7_1:+60414973 None:intergenic
GCGGCGGCGAGAAATGGAGA+AGG 0.628013 7_1:+60415168 None:intergenic
GTTGGTGATTACCTCCTCCG+TGG 0.630355 7_1:+60413783 None:intergenic
GGCGGCGAGAAATGGAGAAG+GGG 0.633246 7_1:+60415170 None:intergenic
ACCCCGATAATGATACCTCT+AGG 0.637049 7_1:-60414723 Msa1027870:intron
TAGGCAGTGAAGGTGCAGGA+AGG 0.644559 7_1:+60413491 None:intergenic
TTGGTCTCATTGCTGCCAAG+AGG 0.653221 7_1:-60413709 Msa1027870:CDS
TACTGGCATGACCAATATGT+TGG 0.654768 7_1:+60413765 None:intergenic
ACCACAAGTTCAGAGTGAAG+AGG 0.655234 7_1:-60413856 Msa1027870:CDS
GCGGCGAGAAATGGAGAAGG+GGG 0.655589 7_1:+60415171 None:intergenic
AATCCTGTTGAGCATCCCCA+CGG 0.655918 7_1:-60413800 Msa1027870:CDS
ACCTAGAGGTATCATTATCG+GGG 0.665372 7_1:+60414722 None:intergenic
CTTCCGTTATCAGAAACAGA+AGG 0.665450 7_1:-60414944 Msa1027870:CDS
GCAAAACATTACCAACAACA+AGG 0.667504 7_1:+60414857 None:intergenic
GAGGGTCATGTTGGTGACCG+TGG 0.688077 7_1:-60414793 Msa1027870:CDS
AGACCAACCTTCTGTCCAGG+AGG 0.695738 7_1:+60413725 None:intergenic
CAAAACATTACCAACAACAA+GGG 0.700199 7_1:+60414858 None:intergenic
ACCTGGATCGTGGATGACGT+CGG 0.724990 7_1:+60415005 None:intergenic
CCTGTTGAGCATCCCCACGG+AGG 0.744930 7_1:-60413797 Msa1027870:CDS
TGGTGATTACCTCCTCCGTG+GGG 0.779827 7_1:+60413785 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTGATGTTATTTTTAA+TGG - chr7_1:60413903-60413922 Msa1027870:CDS 10.0%
!!! AAATTTTTAATCAGATTTTA+AGG + chr7_1:60414370-60414389 None:intergenic 10.0%
!!! TTAAAAATTTATACCTTTTT+TGG - chr7_1:60414380-60414399 Msa1027870:intron 10.0%
!! TTTCGATTAATATTAATTTA+AGG - chr7_1:60414476-60414495 Msa1027870:intron 10.0%
!!! CAATATAATACTTTTTTATT+AGG - chr7_1:60414511-60414530 Msa1027870:intron 10.0%
!!! TTATTTGATGTTATTTTTAA+TGG - chr7_1:60413903-60413922 Msa1027870:CDS 10.0%
!!! AAATTTTTAATCAGATTTTA+AGG + chr7_1:60414370-60414389 None:intergenic 10.0%
!!! TTAAAAATTTATACCTTTTT+TGG - chr7_1:60414380-60414399 Msa1027870:intron 10.0%
!! TTTCGATTAATATTAATTTA+AGG - chr7_1:60414476-60414495 Msa1027870:intron 10.0%
!!! CAATATAATACTTTTTTATT+AGG - chr7_1:60414511-60414530 Msa1027870:intron 10.0%
!!! GTTTGATTATATTATGATTT+TGG - chr7_1:60413927-60413946 Msa1027870:CDS 15.0%
!!! TATGATTTTGGAATTAAATT+TGG - chr7_1:60413939-60413958 Msa1027870:CDS 15.0%
!!! TTATATTTTTGGATTGATTT+TGG - chr7_1:60414115-60414134 Msa1027870:intron 15.0%
!!! AAATTTGTTTTGTAAATTCA+TGG - chr7_1:60414259-60414278 Msa1027870:intron 15.0%
!!! TATCATTTAAAATCCAAAAA+AGG + chr7_1:60414396-60414415 None:intergenic 15.0%
!!! ATCATTTTCCTAAAATATTA+TGG - chr7_1:60415023-60415042 Msa1027870:CDS 15.0%
!!! GTTTGATTATATTATGATTT+TGG - chr7_1:60413927-60413946 Msa1027870:CDS 15.0%
!!! TATGATTTTGGAATTAAATT+TGG - chr7_1:60413939-60413958 Msa1027870:CDS 15.0%
!!! TTATATTTTTGGATTGATTT+TGG - chr7_1:60414115-60414134 Msa1027870:intron 15.0%
!!! AAATTTGTTTTGTAAATTCA+TGG - chr7_1:60414259-60414278 Msa1027870:intron 15.0%
!!! TATCATTTAAAATCCAAAAA+AGG + chr7_1:60414396-60414415 None:intergenic 15.0%
!!! ATCATTTTCCTAAAATATTA+TGG - chr7_1:60415023-60415042 Msa1027870:CDS 15.0%
!! AAGAATAAAAATATACCTAG+AGG + chr7_1:60413870-60413889 None:intergenic 20.0%
!! AATTAAATTTGGTATTTGAG+TGG - chr7_1:60413950-60413969 Msa1027870:CDS 20.0%
!! TTCAATAGAAATATTTGATC+TGG - chr7_1:60413982-60414001 Msa1027870:intron 20.0%
!! TCAATAGAAATATTTGATCT+GGG - chr7_1:60413983-60414002 Msa1027870:intron 20.0%
!!! GTATTTTTAGTAGATTGAAT+TGG - chr7_1:60414137-60414156 Msa1027870:intron 20.0%
!!! AAAATACTCTGAAAACTAAT+TGG + chr7_1:60414424-60414443 None:intergenic 20.0%
!! AATCTAAACTGCTTATTTAT+CGG + chr7_1:60414935-60414954 None:intergenic 20.0%
!! AGTTTAACAAGAAACAAAAT+TGG + chr7_1:60414986-60415005 None:intergenic 20.0%
!! CAAACAAATAATAAATCAGT+AGG + chr7_1:60415106-60415125 None:intergenic 20.0%
!!! CTACTGATTTATTATTTGTT+TGG - chr7_1:60415104-60415123 Msa1027870:CDS 20.0%
!! GATTTATTATTTGTTTGGAA+TGG - chr7_1:60415109-60415128 Msa1027870:CDS 20.0%
!!! AAATTGCTTTTATTTACAAC+CGG - chr7_1:60415134-60415153 Msa1027870:CDS 20.0%
!!! TCAAATTTCTTTGAAATTCT+TGG - chr7_1:60415185-60415204 Msa1027870:five_prime_UTR 20.0%
!! AAGAATAAAAATATACCTAG+AGG + chr7_1:60413870-60413889 None:intergenic 20.0%
!! AATTAAATTTGGTATTTGAG+TGG - chr7_1:60413950-60413969 Msa1027870:CDS 20.0%
!! TTCAATAGAAATATTTGATC+TGG - chr7_1:60413982-60414001 Msa1027870:intron 20.0%
!! TCAATAGAAATATTTGATCT+GGG - chr7_1:60413983-60414002 Msa1027870:intron 20.0%
!!! GTATTTTTAGTAGATTGAAT+TGG - chr7_1:60414137-60414156 Msa1027870:intron 20.0%
!!! AAAATACTCTGAAAACTAAT+TGG + chr7_1:60414424-60414443 None:intergenic 20.0%
!! AATCTAAACTGCTTATTTAT+CGG + chr7_1:60414935-60414954 None:intergenic 20.0%
!! AGTTTAACAAGAAACAAAAT+TGG + chr7_1:60414986-60415005 None:intergenic 20.0%
!! CAAACAAATAATAAATCAGT+AGG + chr7_1:60415106-60415125 None:intergenic 20.0%
!!! CTACTGATTTATTATTTGTT+TGG - chr7_1:60415104-60415123 Msa1027870:CDS 20.0%
!! GATTTATTATTTGTTTGGAA+TGG - chr7_1:60415109-60415128 Msa1027870:CDS 20.0%
!!! AAATTGCTTTTATTTACAAC+CGG - chr7_1:60415134-60415153 Msa1027870:CDS 20.0%
!!! TCAAATTTCTTTGAAATTCT+TGG - chr7_1:60415185-60415204 Msa1027870:five_prime_UTR 20.0%
!! GAATTGATGTTAGTGTTTTT+CGG - chr7_1:60414071-60414090 Msa1027870:intron 25.0%
!!! CAAATTTGATTTGTTTAAGC+TGG - chr7_1:60414187-60414206 Msa1027870:intron 25.0%
! TAGCACAATATAAACAAATC+GGG + chr7_1:60414313-60414332 None:intergenic 25.0%
! CTAGCACAATATAAACAAAT+CGG + chr7_1:60414314-60414333 None:intergenic 25.0%
! TTGATTTCAATGCAGAAAAT+TGG - chr7_1:60414338-60414357 Msa1027870:intron 25.0%
! TGATTTCAATGCAGAAAATT+GGG - chr7_1:60414339-60414358 Msa1027870:intron 25.0%
!!! AGGGTTTTGTTTGATTATTT+AGG - chr7_1:60414531-60414550 Msa1027870:intron 25.0%
! TTTAGGTGTATACTTGATTT+AGG - chr7_1:60414548-60414567 Msa1027870:intron 25.0%
!!! TGAAATGAGTTTTGTTATAC+AGG - chr7_1:60414581-60414600 Msa1027870:intron 25.0%
!! CAAAAGCTCCATAATATTTT+AGG + chr7_1:60415034-60415053 None:intergenic 25.0%
! GACACGAATTAATCAATAAA+TGG + chr7_1:60415167-60415186 None:intergenic 25.0%
!! GAATTGATGTTAGTGTTTTT+CGG - chr7_1:60414071-60414090 Msa1027870:intron 25.0%
!!! CAAATTTGATTTGTTTAAGC+TGG - chr7_1:60414187-60414206 Msa1027870:intron 25.0%
! TAGCACAATATAAACAAATC+GGG + chr7_1:60414313-60414332 None:intergenic 25.0%
! CTAGCACAATATAAACAAAT+CGG + chr7_1:60414314-60414333 None:intergenic 25.0%
! TTGATTTCAATGCAGAAAAT+TGG - chr7_1:60414338-60414357 Msa1027870:intron 25.0%
! TGATTTCAATGCAGAAAATT+GGG - chr7_1:60414339-60414358 Msa1027870:intron 25.0%
!!! AGGGTTTTGTTTGATTATTT+AGG - chr7_1:60414531-60414550 Msa1027870:intron 25.0%
! TTTAGGTGTATACTTGATTT+AGG - chr7_1:60414548-60414567 Msa1027870:intron 25.0%
!!! TGAAATGAGTTTTGTTATAC+AGG - chr7_1:60414581-60414600 Msa1027870:intron 25.0%
!! CAAAAGCTCCATAATATTTT+AGG + chr7_1:60415034-60415053 None:intergenic 25.0%
! GACACGAATTAATCAATAAA+TGG + chr7_1:60415167-60415186 None:intergenic 25.0%
GTTTATTTACTGCGGTAAAA+AGG - chr7_1:60413691-60413710 Msa1027870:CDS 30.0%
CAAAACATTACCAACAACAA+GGG + chr7_1:60413720-60413739 None:intergenic 30.0%
!! ATACCTAGAGGTATCATTAT+CGG + chr7_1:60413858-60413877 None:intergenic 30.0%
!! ATGTTAGTGTTTTTCGGTTA+TGG - chr7_1:60414077-60414096 Msa1027870:intron 30.0%
TAGATTGAATTGGAATTGAG+TGG - chr7_1:60414147-60414166 Msa1027870:intron 30.0%
AGATTGAATTGGAATTGAGT+GGG - chr7_1:60414148-60414167 Msa1027870:intron 30.0%
! ATACTCTGAAAACTAATTGG+AGG + chr7_1:60414421-60414440 None:intergenic 30.0%
GTTTATTTACTGCGGTAAAA+AGG - chr7_1:60413691-60413710 Msa1027870:CDS 30.0%
CAAAACATTACCAACAACAA+GGG + chr7_1:60413720-60413739 None:intergenic 30.0%
!! ATACCTAGAGGTATCATTAT+CGG + chr7_1:60413858-60413877 None:intergenic 30.0%
!! ATGTTAGTGTTTTTCGGTTA+TGG - chr7_1:60414077-60414096 Msa1027870:intron 30.0%
TAGATTGAATTGGAATTGAG+TGG - chr7_1:60414147-60414166 Msa1027870:intron 30.0%
AGATTGAATTGGAATTGAGT+GGG - chr7_1:60414148-60414167 Msa1027870:intron 30.0%
! ATACTCTGAAAACTAATTGG+AGG + chr7_1:60414421-60414440 None:intergenic 30.0%
!! TTCTGTTTCTGATAACGGAA+GGG + chr7_1:60413632-60413651 None:intergenic 35.0%
GCAAAACATTACCAACAACA+AGG + chr7_1:60413721-60413740 None:intergenic 35.0%
! TGCTGTGATTTGTAATGTTG+AGG - chr7_1:60413763-60413782 Msa1027870:CDS 35.0%
! GCTGTGATTTGTAATGTTGA+GGG - chr7_1:60413764-60413783 Msa1027870:CDS 35.0%
!! TACCTAGAGGTATCATTATC+GGG + chr7_1:60413857-60413876 None:intergenic 35.0%
ATCGGGTTCAAAATTCATCT+TGG + chr7_1:60414296-60414315 None:intergenic 35.0%
TGAAGTGAAGTCATGGATAT+AGG - chr7_1:60414451-60414470 Msa1027870:intron 35.0%
AATAAATCAGTAGGCAGTGA+AGG + chr7_1:60415097-60415116 None:intergenic 35.0%
!! TTCTGTTTCTGATAACGGAA+GGG + chr7_1:60413632-60413651 None:intergenic 35.0%
GCAAAACATTACCAACAACA+AGG + chr7_1:60413721-60413740 None:intergenic 35.0%
! TGCTGTGATTTGTAATGTTG+AGG - chr7_1:60413763-60413782 Msa1027870:CDS 35.0%
! GCTGTGATTTGTAATGTTGA+GGG - chr7_1:60413764-60413783 Msa1027870:CDS 35.0%
!! TACCTAGAGGTATCATTATC+GGG + chr7_1:60413857-60413876 None:intergenic 35.0%
ATCGGGTTCAAAATTCATCT+TGG + chr7_1:60414296-60414315 None:intergenic 35.0%
TGAAGTGAAGTCATGGATAT+AGG - chr7_1:60414451-60414470 Msa1027870:intron 35.0%
AATAAATCAGTAGGCAGTGA+AGG + chr7_1:60415097-60415116 None:intergenic 35.0%
GTGTGTGTGGGATTTGAAAA+CGG + chr7_1:60413477-60413496 None:intergenic 40.0%
!! CTTCTGTTTCTGATAACGGA+AGG + chr7_1:60413633-60413652 None:intergenic 40.0%
CTTCCGTTATCAGAAACAGA+AGG - chr7_1:60413631-60413650 Msa1027870:three_prime_UTR 40.0%
!! GCTCCTTCTGTTTCTGATAA+CGG + chr7_1:60413637-60413656 None:intergenic 40.0%
ACCGGTCAGTTTATTTACTG+CGG - chr7_1:60413683-60413702 Msa1027870:CDS 40.0%
ACCGCAGTAAATAAACTGAC+CGG + chr7_1:60413687-60413706 None:intergenic 40.0%
! AAAAAGGCTACCCTTGTTGT+TGG - chr7_1:60413707-60413726 Msa1027870:CDS 40.0%
CCTTCAGGAATAGATCTAAG+AGG + chr7_1:60413743-60413762 None:intergenic 40.0%
CCTCTTAGATCTATTCCTGA+AGG - chr7_1:60413740-60413759 Msa1027870:CDS 40.0%
TTACAAATCACAGCACCTTC+AGG + chr7_1:60413758-60413777 None:intergenic 40.0%
TGTAATGTTGAGGGTCATGT+TGG - chr7_1:60413773-60413792 Msa1027870:CDS 40.0%
! AAGCTCTAGCAAAAACACCA+CGG + chr7_1:60413802-60413821 None:intergenic 40.0%
!! ACCTAGAGGTATCATTATCG+GGG + chr7_1:60413856-60413875 None:intergenic 40.0%
TCATGACTGAAGTGAAGTCA+TGG - chr7_1:60414444-60414463 Msa1027870:intron 40.0%
AACTGAGAAGCCAATGTTGA+AGG - chr7_1:60414684-60414703 Msa1027870:intron 40.0%
GAACTTGTGGTAAGCATTAC+CGG + chr7_1:60414710-60414729 None:intergenic 40.0%
GGAGGTAATCACCAACATAT+TGG - chr7_1:60414799-60414818 Msa1027870:CDS 40.0%
TACTGGCATGACCAATATGT+TGG + chr7_1:60414813-60414832 None:intergenic 40.0%
ATCAATAAATGGCGTGTCAC+CGG + chr7_1:60415156-60415175 None:intergenic 40.0%
GTGTGTGTGGGATTTGAAAA+CGG + chr7_1:60413477-60413496 None:intergenic 40.0%
!! CTTCTGTTTCTGATAACGGA+AGG + chr7_1:60413633-60413652 None:intergenic 40.0%
CTTCCGTTATCAGAAACAGA+AGG - chr7_1:60413631-60413650 Msa1027870:three_prime_UTR 40.0%
!! GCTCCTTCTGTTTCTGATAA+CGG + chr7_1:60413637-60413656 None:intergenic 40.0%
ACCGGTCAGTTTATTTACTG+CGG - chr7_1:60413683-60413702 Msa1027870:CDS 40.0%
ACCGCAGTAAATAAACTGAC+CGG + chr7_1:60413687-60413706 None:intergenic 40.0%
! AAAAAGGCTACCCTTGTTGT+TGG - chr7_1:60413707-60413726 Msa1027870:CDS 40.0%
CCTTCAGGAATAGATCTAAG+AGG + chr7_1:60413743-60413762 None:intergenic 40.0%
CCTCTTAGATCTATTCCTGA+AGG - chr7_1:60413740-60413759 Msa1027870:CDS 40.0%
TTACAAATCACAGCACCTTC+AGG + chr7_1:60413758-60413777 None:intergenic 40.0%
TGTAATGTTGAGGGTCATGT+TGG - chr7_1:60413773-60413792 Msa1027870:CDS 40.0%
! AAGCTCTAGCAAAAACACCA+CGG + chr7_1:60413802-60413821 None:intergenic 40.0%
!! ACCTAGAGGTATCATTATCG+GGG + chr7_1:60413856-60413875 None:intergenic 40.0%
TCATGACTGAAGTGAAGTCA+TGG - chr7_1:60414444-60414463 Msa1027870:intron 40.0%
AACTGAGAAGCCAATGTTGA+AGG - chr7_1:60414684-60414703 Msa1027870:intron 40.0%
GAACTTGTGGTAAGCATTAC+CGG + chr7_1:60414710-60414729 None:intergenic 40.0%
GGAGGTAATCACCAACATAT+TGG - chr7_1:60414799-60414818 Msa1027870:CDS 40.0%
TACTGGCATGACCAATATGT+TGG + chr7_1:60414813-60414832 None:intergenic 40.0%
ATCAATAAATGGCGTGTCAC+CGG + chr7_1:60415156-60415175 None:intergenic 40.0%
! GGGAAGTTCTAACCTAGGTT+TGG + chr7_1:60413374-60413393 None:intergenic 45.0%
! GGAATGGGAAGTTCTAACCT+AGG + chr7_1:60413379-60413398 None:intergenic 45.0%
! GATGACACGACCCATTTTAG+CGG + chr7_1:60413429-60413448 None:intergenic 45.0%
!! TCTGATAACGGAAGGGATGA+CGG + chr7_1:60413625-60413644 None:intergenic 45.0%
!! GGTGTTTTTGCTAGAGCTTC+TGG - chr7_1:60413803-60413822 Msa1027870:CDS 45.0%
ACCCCGATAATGATACCTCT+AGG - chr7_1:60413852-60413871 Msa1027870:CDS 45.0%
TACAGGATCAAGCTTCCATC+TGG - chr7_1:60414598-60414617 Msa1027870:intron 45.0%
ACAATCTTCTTGGCACCAGA+TGG + chr7_1:60414616-60414635 None:intergenic 45.0%
GTCACTTGGCACAATCTTCT+TGG + chr7_1:60414626-60414645 None:intergenic 45.0%
ACCACAAGTTCAGAGTGAAG+AGG - chr7_1:60414719-60414738 Msa1027870:intron 45.0%
TCCTCTTCACTCTGAACTTG+TGG + chr7_1:60414723-60414742 None:intergenic 45.0%
TCAGAGTGAAGAGGAACTGT+TGG - chr7_1:60414728-60414747 Msa1027870:CDS 45.0%
ATAGCAACACCACGAACCTT+AGG + chr7_1:60414754-60414773 None:intergenic 45.0%
! GGGAAGTTCTAACCTAGGTT+TGG + chr7_1:60413374-60413393 None:intergenic 45.0%
! GGAATGGGAAGTTCTAACCT+AGG + chr7_1:60413379-60413398 None:intergenic 45.0%
! GATGACACGACCCATTTTAG+CGG + chr7_1:60413429-60413448 None:intergenic 45.0%
!! TCTGATAACGGAAGGGATGA+CGG + chr7_1:60413625-60413644 None:intergenic 45.0%
!! GGTGTTTTTGCTAGAGCTTC+TGG - chr7_1:60413803-60413822 Msa1027870:CDS 45.0%
ACCCCGATAATGATACCTCT+AGG - chr7_1:60413852-60413871 Msa1027870:CDS 45.0%
TACAGGATCAAGCTTCCATC+TGG - chr7_1:60414598-60414617 Msa1027870:intron 45.0%
ACAATCTTCTTGGCACCAGA+TGG + chr7_1:60414616-60414635 None:intergenic 45.0%
GTCACTTGGCACAATCTTCT+TGG + chr7_1:60414626-60414645 None:intergenic 45.0%
ACCACAAGTTCAGAGTGAAG+AGG - chr7_1:60414719-60414738 Msa1027870:intron 45.0%
TCCTCTTCACTCTGAACTTG+TGG + chr7_1:60414723-60414742 None:intergenic 45.0%
TCAGAGTGAAGAGGAACTGT+TGG - chr7_1:60414728-60414747 Msa1027870:CDS 45.0%
ATAGCAACACCACGAACCTT+AGG + chr7_1:60414754-60414773 None:intergenic 45.0%
!!! TTATTATTTGATTATATTTT+TGG - chr7_1:60414104-60414123 Msa1027870:intron 5.0%
!!! AATATAATACTTTTTTATTA+GGG - chr7_1:60414512-60414531 Msa1027870:intron 5.0%
!!! TTATTATTTGATTATATTTT+TGG - chr7_1:60414104-60414123 Msa1027870:intron 5.0%
!!! AATATAATACTTTTTTATTA+GGG - chr7_1:60414512-60414531 Msa1027870:intron 5.0%
!! ATTTTAGCGGCGGCGAGAAA+TGG + chr7_1:60413416-60413435 None:intergenic 50.0%
ATTTCTCGCCGCCGCTAAAA+TGG - chr7_1:60413415-60413434 Msa1027870:three_prime_UTR 50.0%
TTTCTCGCCGCCGCTAAAAT+GGG - chr7_1:60413416-60413435 Msa1027870:three_prime_UTR 50.0%
GAACGCAACGGTTACCTCAA+AGG - chr7_1:60413539-60413558 Msa1027870:three_prime_UTR 50.0%
CGGAAAGTCACCTTAGCAAG+AGG + chr7_1:60413605-60413624 None:intergenic 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG - chr7_1:60413653-60413672 Msa1027870:exon 50.0%
GCTGCTGAGGGTTTGTATAC+CGG - chr7_1:60413665-60413684 Msa1027870:CDS 50.0%
AGATTGTGCCAAGTGACTGC+AGG - chr7_1:60414629-60414648 Msa1027870:intron 50.0%
GATTGTGCCAAGTGACTGCA+GGG - chr7_1:60414630-60414649 Msa1027870:intron 50.0%
ACCAGCAACTTGCCCAATCA+TGG + chr7_1:60414656-60414675 None:intergenic 50.0%
ATGATTGGGCAAGTTGCTGG+TGG - chr7_1:60414655-60414674 Msa1027870:intron 50.0%
GAGAAGCCAATGTTGAAGGC+CGG - chr7_1:60414688-60414707 Msa1027870:intron 50.0%
GCATTACCGGCCTTCAACAT+TGG + chr7_1:60414697-60414716 None:intergenic 50.0%
! GAAGAGGAACTGTTGGCCTA+AGG - chr7_1:60414735-60414754 Msa1027870:CDS 50.0%
! AACTGTTGGCCTAAGGTTCG+TGG - chr7_1:60414742-60414761 Msa1027870:CDS 50.0%
AATCCTGTTGAGCATCCCCA+CGG - chr7_1:60414775-60414794 Msa1027870:CDS 50.0%
! TTGGTGATTACCTCCTCCGT+GGG + chr7_1:60414794-60414813 None:intergenic 50.0%
AGCATCACGTCTGACAGTAC+TGG + chr7_1:60414830-60414849 None:intergenic 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr7_1:60414856-60414875 None:intergenic 50.0%
TTGGTCTCATTGCTGCCAAG+AGG - chr7_1:60414866-60414885 Msa1027870:CDS 50.0%
!! CAAGAGGACTGGTCGTCTTA+GGG - chr7_1:60414882-60414901 Msa1027870:CDS 50.0%
!! AAGAGGACTGGTCGTCTTAG+GGG - chr7_1:60414883-60414902 Msa1027870:CDS 50.0%
CTTGGTCAGCCCAAGTTTCA+TGG - chr7_1:60415203-60415222 Msa1027870:five_prime_UTR 50.0%
!! ATTTTAGCGGCGGCGAGAAA+TGG + chr7_1:60413416-60413435 None:intergenic 50.0%
ATTTCTCGCCGCCGCTAAAA+TGG - chr7_1:60413415-60413434 Msa1027870:three_prime_UTR 50.0%
TTTCTCGCCGCCGCTAAAAT+GGG - chr7_1:60413416-60413435 Msa1027870:three_prime_UTR 50.0%
GAACGCAACGGTTACCTCAA+AGG - chr7_1:60413539-60413558 Msa1027870:three_prime_UTR 50.0%
CGGAAAGTCACCTTAGCAAG+AGG + chr7_1:60413605-60413624 None:intergenic 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG - chr7_1:60413653-60413672 Msa1027870:exon 50.0%
GCTGCTGAGGGTTTGTATAC+CGG - chr7_1:60413665-60413684 Msa1027870:CDS 50.0%
AGATTGTGCCAAGTGACTGC+AGG - chr7_1:60414629-60414648 Msa1027870:intron 50.0%
GATTGTGCCAAGTGACTGCA+GGG - chr7_1:60414630-60414649 Msa1027870:intron 50.0%
ACCAGCAACTTGCCCAATCA+TGG + chr7_1:60414656-60414675 None:intergenic 50.0%
ATGATTGGGCAAGTTGCTGG+TGG - chr7_1:60414655-60414674 Msa1027870:intron 50.0%
GAGAAGCCAATGTTGAAGGC+CGG - chr7_1:60414688-60414707 Msa1027870:intron 50.0%
GCATTACCGGCCTTCAACAT+TGG + chr7_1:60414697-60414716 None:intergenic 50.0%
! GAAGAGGAACTGTTGGCCTA+AGG - chr7_1:60414735-60414754 Msa1027870:CDS 50.0%
! AACTGTTGGCCTAAGGTTCG+TGG - chr7_1:60414742-60414761 Msa1027870:CDS 50.0%
AATCCTGTTGAGCATCCCCA+CGG - chr7_1:60414775-60414794 Msa1027870:CDS 50.0%
! TTGGTGATTACCTCCTCCGT+GGG + chr7_1:60414794-60414813 None:intergenic 50.0%
AGCATCACGTCTGACAGTAC+TGG + chr7_1:60414830-60414849 None:intergenic 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr7_1:60414856-60414875 None:intergenic 50.0%
TTGGTCTCATTGCTGCCAAG+AGG - chr7_1:60414866-60414885 Msa1027870:CDS 50.0%
!! CAAGAGGACTGGTCGTCTTA+GGG - chr7_1:60414882-60414901 Msa1027870:CDS 50.0%
!! AAGAGGACTGGTCGTCTTAG+GGG - chr7_1:60414883-60414902 Msa1027870:CDS 50.0%
CTTGGTCAGCCCAAGTTTCA+TGG - chr7_1:60415203-60415222 Msa1027870:five_prime_UTR 50.0%
GAGAAGGGGGAGTGAGGAAT+GGG + chr7_1:60413394-60413413 None:intergenic 55.0%
GAAATGGAGAAGGGGGAGTG+AGG + chr7_1:60413400-60413419 None:intergenic 55.0%
!! GACACGACCCATTTTAGCGG+CGG + chr7_1:60413426-60413445 None:intergenic 55.0%
TGTCATCCGTGCCCAACGTA+AGG - chr7_1:60413442-60413461 Msa1027870:three_prime_UTR 55.0%
GTCATCCGTGCCCAACGTAA+GGG - chr7_1:60413443-60413462 Msa1027870:three_prime_UTR 55.0%
GGAACCTGCTCCCTTACGTT+GGG + chr7_1:60413456-60413475 None:intergenic 55.0%
GAAGTCGAGGGAACGGAAAC+GGG + chr7_1:60413516-60413535 None:intergenic 55.0%
CGAAGTCGAGGGAACGGAAA+CGG + chr7_1:60413517-60413536 None:intergenic 55.0%
CGTTTCCGTTCCCTCGACTT+CGG - chr7_1:60413515-60413534 Msa1027870:three_prime_UTR 55.0%
ACCTGGATCGTGGATGACGT+CGG + chr7_1:60413573-60413592 None:intergenic 55.0%
TCGTGGTGCTCCTCTTGCTA+AGG - chr7_1:60413592-60413611 Msa1027870:three_prime_UTR 55.0%
! GGAGCTTTTCGTTGCTGCTG+AGG - chr7_1:60413652-60413671 Msa1027870:exon 55.0%
ATCATGGCCCTGCAGTCACT+TGG + chr7_1:60414640-60414659 None:intergenic 55.0%
AGTGACTGCAGGGCCATGAT+TGG - chr7_1:60414640-60414659 Msa1027870:intron 55.0%
GTGACTGCAGGGCCATGATT+GGG - chr7_1:60414641-60414660 Msa1027870:intron 55.0%
GCCATGATTGGGCAAGTTGC+TGG - chr7_1:60414652-60414671 Msa1027870:intron 55.0%
ATTGGGCAAGTTGCTGGTGG+TGG - chr7_1:60414658-60414677 Msa1027870:intron 55.0%
TGGTGATTACCTCCTCCGTG+GGG + chr7_1:60414793-60414812 None:intergenic 55.0%
!! GTTGGTGATTACCTCCTCCG+TGG + chr7_1:60414795-60414814 None:intergenic 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr7_1:60414843-60414862 Msa1027870:CDS 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr7_1:60414853-60414872 None:intergenic 55.0%
CTCATTGCTGCCAAGAGGAC+TGG - chr7_1:60414871-60414890 Msa1027870:CDS 55.0%
CCTAAGACGACCAGTCCTCT+TGG + chr7_1:60414884-60414903 None:intergenic 55.0%
!! CCAAGAGGACTGGTCGTCTT+AGG - chr7_1:60414881-60414900 Msa1027870:CDS 55.0%
! TAGGCAGTGAAGGTGCAGGA+AGG + chr7_1:60415087-60415106 None:intergenic 55.0%
! TCAGTAGGCAGTGAAGGTGC+AGG + chr7_1:60415091-60415110 None:intergenic 55.0%
GAGAAGGGGGAGTGAGGAAT+GGG + chr7_1:60413394-60413413 None:intergenic 55.0%
GAAATGGAGAAGGGGGAGTG+AGG + chr7_1:60413400-60413419 None:intergenic 55.0%
!! GACACGACCCATTTTAGCGG+CGG + chr7_1:60413426-60413445 None:intergenic 55.0%
TGTCATCCGTGCCCAACGTA+AGG - chr7_1:60413442-60413461 Msa1027870:three_prime_UTR 55.0%
GTCATCCGTGCCCAACGTAA+GGG - chr7_1:60413443-60413462 Msa1027870:three_prime_UTR 55.0%
GGAACCTGCTCCCTTACGTT+GGG + chr7_1:60413456-60413475 None:intergenic 55.0%
GAAGTCGAGGGAACGGAAAC+GGG + chr7_1:60413516-60413535 None:intergenic 55.0%
CGAAGTCGAGGGAACGGAAA+CGG + chr7_1:60413517-60413536 None:intergenic 55.0%
CGTTTCCGTTCCCTCGACTT+CGG - chr7_1:60413515-60413534 Msa1027870:three_prime_UTR 55.0%
ACCTGGATCGTGGATGACGT+CGG + chr7_1:60413573-60413592 None:intergenic 55.0%
TCGTGGTGCTCCTCTTGCTA+AGG - chr7_1:60413592-60413611 Msa1027870:three_prime_UTR 55.0%
! GGAGCTTTTCGTTGCTGCTG+AGG - chr7_1:60413652-60413671 Msa1027870:exon 55.0%
ATCATGGCCCTGCAGTCACT+TGG + chr7_1:60414640-60414659 None:intergenic 55.0%
AGTGACTGCAGGGCCATGAT+TGG - chr7_1:60414640-60414659 Msa1027870:intron 55.0%
GTGACTGCAGGGCCATGATT+GGG - chr7_1:60414641-60414660 Msa1027870:intron 55.0%
GCCATGATTGGGCAAGTTGC+TGG - chr7_1:60414652-60414671 Msa1027870:intron 55.0%
ATTGGGCAAGTTGCTGGTGG+TGG - chr7_1:60414658-60414677 Msa1027870:intron 55.0%
TGGTGATTACCTCCTCCGTG+GGG + chr7_1:60414793-60414812 None:intergenic 55.0%
!! GTTGGTGATTACCTCCTCCG+TGG + chr7_1:60414795-60414814 None:intergenic 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr7_1:60414843-60414862 Msa1027870:CDS 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr7_1:60414853-60414872 None:intergenic 55.0%
CTCATTGCTGCCAAGAGGAC+TGG - chr7_1:60414871-60414890 Msa1027870:CDS 55.0%
CCTAAGACGACCAGTCCTCT+TGG + chr7_1:60414884-60414903 None:intergenic 55.0%
!! CCAAGAGGACTGGTCGTCTT+AGG - chr7_1:60414881-60414900 Msa1027870:CDS 55.0%
! TAGGCAGTGAAGGTGCAGGA+AGG + chr7_1:60415087-60415106 None:intergenic 55.0%
! TCAGTAGGCAGTGAAGGTGC+AGG + chr7_1:60415091-60415110 None:intergenic 55.0%
GGAGAAGGGGGAGTGAGGAA+TGG + chr7_1:60413395-60413414 None:intergenic 60.0%
GCGGCGAGAAATGGAGAAGG+GGG + chr7_1:60413407-60413426 None:intergenic 60.0%
GGCGGCGAGAAATGGAGAAG+GGG + chr7_1:60413408-60413427 None:intergenic 60.0%
CGGCGGCGAGAAATGGAGAA+GGG + chr7_1:60413409-60413428 None:intergenic 60.0%
CTGCTCCCTTACGTTGGGCA+CGG + chr7_1:60413451-60413470 None:intergenic 60.0%
CGGAACCTGCTCCCTTACGT+TGG + chr7_1:60413457-60413476 None:intergenic 60.0%
TCCCACACACACCACCGCAA+AGG - chr7_1:60413485-60413504 Msa1027870:three_prime_UTR 60.0%
GCCTTTGCGGTGGTGTGTGT+GGG + chr7_1:60413489-60413508 None:intergenic 60.0%
GTTCGCCGAAGTCGAGGGAA+CGG + chr7_1:60413523-60413542 None:intergenic 60.0%
GTTGCGTTCGCCGAAGTCGA+GGG + chr7_1:60413528-60413547 None:intergenic 60.0%
CTCGACTTCGGCGAACGCAA+CGG - chr7_1:60413527-60413546 Msa1027870:three_prime_UTR 60.0%
CGTCGGTGACGACTCCTTTG+AGG + chr7_1:60413556-60413575 None:intergenic 60.0%
ACCGACGTCATCCACGATCC+AGG - chr7_1:60413569-60413588 Msa1027870:three_prime_UTR 60.0%
GTCATCCACGATCCAGGTCG+TGG - chr7_1:60413575-60413594 Msa1027870:three_prime_UTR 60.0%
!! GAGGGTCATGTTGGTGACCG+TGG - chr7_1:60413782-60413801 Msa1027870:CDS 60.0%
GTCAGACGTGATGCTCCTCC+TGG - chr7_1:60414835-60414854 Msa1027870:CDS 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr7_1:60414847-60414866 Msa1027870:CDS 60.0%
GGAGAAGGGGGAGTGAGGAA+TGG + chr7_1:60413395-60413414 None:intergenic 60.0%
GCGGCGAGAAATGGAGAAGG+GGG + chr7_1:60413407-60413426 None:intergenic 60.0%
GGCGGCGAGAAATGGAGAAG+GGG + chr7_1:60413408-60413427 None:intergenic 60.0%
CGGCGGCGAGAAATGGAGAA+GGG + chr7_1:60413409-60413428 None:intergenic 60.0%
CTGCTCCCTTACGTTGGGCA+CGG + chr7_1:60413451-60413470 None:intergenic 60.0%
CGGAACCTGCTCCCTTACGT+TGG + chr7_1:60413457-60413476 None:intergenic 60.0%
TCCCACACACACCACCGCAA+AGG - chr7_1:60413485-60413504 Msa1027870:three_prime_UTR 60.0%
GCCTTTGCGGTGGTGTGTGT+GGG + chr7_1:60413489-60413508 None:intergenic 60.0%
GTTCGCCGAAGTCGAGGGAA+CGG + chr7_1:60413523-60413542 None:intergenic 60.0%
GTTGCGTTCGCCGAAGTCGA+GGG + chr7_1:60413528-60413547 None:intergenic 60.0%
CTCGACTTCGGCGAACGCAA+CGG - chr7_1:60413527-60413546 Msa1027870:three_prime_UTR 60.0%
CGTCGGTGACGACTCCTTTG+AGG + chr7_1:60413556-60413575 None:intergenic 60.0%
ACCGACGTCATCCACGATCC+AGG - chr7_1:60413569-60413588 Msa1027870:three_prime_UTR 60.0%
GTCATCCACGATCCAGGTCG+TGG - chr7_1:60413575-60413594 Msa1027870:three_prime_UTR 60.0%
!! GAGGGTCATGTTGGTGACCG+TGG - chr7_1:60413782-60413801 Msa1027870:CDS 60.0%
GTCAGACGTGATGCTCCTCC+TGG - chr7_1:60414835-60414854 Msa1027870:CDS 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr7_1:60414847-60414866 Msa1027870:CDS 60.0%
GCGGCGGCGAGAAATGGAGA+AGG + chr7_1:60413410-60413429 None:intergenic 65.0%
CGTGCCCAACGTAAGGGAGC+AGG - chr7_1:60413449-60413468 Msa1027870:three_prime_UTR 65.0%
GGCCTTTGCGGTGGTGTGTG+TGG + chr7_1:60413490-60413509 None:intergenic 65.0%
TCGAGGGAACGGAAACGGGC+GGG + chr7_1:60413512-60413531 None:intergenic 65.0%
GTCGAGGGAACGGAAACGGG+CGG + chr7_1:60413513-60413532 None:intergenic 65.0%
CGTTGCGTTCGCCGAAGTCG+AGG + chr7_1:60413529-60413548 None:intergenic 65.0%
GAGCACCACGACCTGGATCG+TGG + chr7_1:60413583-60413602 None:intergenic 65.0%
!! GCAAGAGGAGCACCACGACC+TGG + chr7_1:60413590-60413609 None:intergenic 65.0%
CCTCCGTGGGGATGCTCAAC+AGG + chr7_1:60414781-60414800 None:intergenic 65.0%
CCTGTTGAGCATCCCCACGG+AGG - chr7_1:60414778-60414797 Msa1027870:CDS 65.0%
GTTGAGCATCCCCACGGAGG+AGG - chr7_1:60414781-60414800 Msa1027870:CDS 65.0%
GCGGCGGCGAGAAATGGAGA+AGG + chr7_1:60413410-60413429 None:intergenic 65.0%
CGTGCCCAACGTAAGGGAGC+AGG - chr7_1:60413449-60413468 Msa1027870:three_prime_UTR 65.0%
GGCCTTTGCGGTGGTGTGTG+TGG + chr7_1:60413490-60413509 None:intergenic 65.0%
TCGAGGGAACGGAAACGGGC+GGG + chr7_1:60413512-60413531 None:intergenic 65.0%
GTCGAGGGAACGGAAACGGG+CGG + chr7_1:60413513-60413532 None:intergenic 65.0%
CGTTGCGTTCGCCGAAGTCG+AGG + chr7_1:60413529-60413548 None:intergenic 65.0%
GAGCACCACGACCTGGATCG+TGG + chr7_1:60413583-60413602 None:intergenic 65.0%
!! GCAAGAGGAGCACCACGACC+TGG + chr7_1:60413590-60413609 None:intergenic 65.0%
CCTCCGTGGGGATGCTCAAC+AGG + chr7_1:60414781-60414800 None:intergenic 65.0%
CCTGTTGAGCATCCCCACGG+AGG - chr7_1:60414778-60414797 Msa1027870:CDS 65.0%
GTTGAGCATCCCCACGGAGG+AGG - chr7_1:60414781-60414800 Msa1027870:CDS 65.0%
GGAAACGGGCGGGGCCTTTG+CGG + chr7_1:60413502-60413521 None:intergenic 70.0%
CGAGGGAACGGAAACGGGCG+GGG + chr7_1:60413511-60413530 None:intergenic 70.0%
GGAAACGGGCGGGGCCTTTG+CGG + chr7_1:60413502-60413521 None:intergenic 70.0%
CGAGGGAACGGAAACGGGCG+GGG + chr7_1:60413511-60413530 None:intergenic 70.0%
AACGGGCGGGGCCTTTGCGG+TGG + chr7_1:60413499-60413518 None:intergenic 75.0%
AACGGGCGGGGCCTTTGCGG+TGG + chr7_1:60413499-60413518 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 60413369 60415228 60413369 ID=Msa1027870;Name=Msa1027870
chr7_1 mRNA 60413369 60415228 60413369 ID=Msa1027870-mRNA-1;Parent=Msa1027870;Name=Msa1027870-mRNA-1;_AED=0.33;_eAED=0.33;_QI=65|1|1|1|1|1|2|286|259
chr7_1 exon 60413369 60413994 60413369 ID=Msa1027870-mRNA-1:exon:12564;Parent=Msa1027870-mRNA-1
chr7_1 exon 60414724 60415228 60414724 ID=Msa1027870-mRNA-1:exon:12563;Parent=Msa1027870-mRNA-1
chr7_1 five_prime_UTR 60415164 60415228 60415164 ID=Msa1027870-mRNA-1:five_prime_utr;Parent=Msa1027870-mRNA-1
chr7_1 CDS 60414724 60415163 60414724 ID=Msa1027870-mRNA-1:cds;Parent=Msa1027870-mRNA-1
chr7_1 CDS 60413655 60413994 60413655 ID=Msa1027870-mRNA-1:cds;Parent=Msa1027870-mRNA-1
chr7_1 three_prime_UTR 60413369 60413654 60413369 ID=Msa1027870-mRNA-1:three_prime_utr;Parent=Msa1027870-mRNA-1
Gene Sequence

>Msa1027870

ATGGGTCGTGTCATCCGTGCCCAACGTAAGGGAGCAGGTTCCGTTTTCAAATCCCACACACACCACCGCAAAGGCCCCGCCCGTTTCCGTTCCCTCGACTTCGGCGAACGCAACGGTTACCTCAAAGGAGTCGTCACCGACGTCATCCACGATCCAGGTCGTGGTGCTCCTCTTGCTAAGGTGACTTTCCGTCATCCCTTCCGTTATCAGAAACAGAAGGAGCTTTTCGTTGCTGCTGAGGGTTTGTATACCGGTCAGTTTATTTACTGCGGTAAAAAGGCTACCCTTGTTGTTGGTAATGTTTTGCCTCTTAGATCTATTCCTGAAGGTGCTGTGATTTGTAATGTTGAGGGTCATGTTGGTGACCGTGGTGTTTTTGCTAGAGCTTCTGGTGATTATGCTATTGTTATCAGTCACAACCCCGATAATGATACCTCTAGGATCAAGCTTCCATCTGGTGCCAAGAAGATTGTGCCAAGTGACTGCAGGGCCATGATTGGGCAAGTTGCTGGTGGTGGAAGAACTGAGAAGCCAATGTTGAAGGCCGGTAATGCTTACCACAAGTTCAGAGTGAAGAGGAACTGTTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTTGAGCATCCCCACGGAGGAGGTAATCACCAACATATTGGTCATGCCAGTACTGTCAGACGTGATGCTCCTCCTGGACAGAAGGTTGGTCTCATTGCTGCCAAGAGGACTGGTCGTCTTAGGGGTCAAGCTGCTGCAAGTGCTGCTAAAGCCGATAAATAA
Protein sequence

>Msa1027870

MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYQKQKELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEGHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAASAAKADK*