Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427380 | ACJ84512.1 | 99.490 | 196 | 1 | 0 | 1 | 196 | 1 | 196 | 6.48e-143 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427380 | sp|O22518|RSSA_SOYBN | 97.340 | 188 | 5 | 0 | 9 | 196 | 13 | 200 | 1.66e-136 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427380 | B7FID3 | 99.490 | 196 | 1 | 0 | 1 | 196 | 1 | 196 | 3.09e-143 | 413 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa0427380 | 0.809051 | 2.290225e-50 | -8.615850e-47 |
| Msa0004760 | Msa0427380 | 0.841380 | 4.921159e-58 | -8.615850e-47 |
| Msa0004790 | Msa0427380 | 0.841941 | 3.501469e-58 | -8.615850e-47 |
| Msa0015100 | Msa0427380 | -0.821807 | 3.318313e-53 | -8.615850e-47 |
| Msa0042980 | Msa0427380 | 0.813983 | 1.941425e-51 | -8.615850e-47 |
| Msa0049770 | Msa0427380 | -0.817813 | 2.714169e-52 | -8.615850e-47 |
| Msa0094940 | Msa0427380 | 0.810477 | 1.130563e-50 | -8.615850e-47 |
| Msa0096940 | Msa0427380 | 0.808455 | 3.070571e-50 | -8.615850e-47 |
| Msa0144970 | Msa0427380 | 0.815073 | 1.114484e-51 | -8.615850e-47 |
| Msa0146910 | Msa0427380 | 0.812728 | 3.664314e-51 | -8.615850e-47 |
| Msa0226620 | Msa0427380 | 0.802764 | 4.805440e-49 | -8.615850e-47 |
| Msa0373350 | Msa0427380 | 0.838723 | 2.427816e-57 | -8.615850e-47 |
| Msa0377610 | Msa0427380 | 0.825687 | 4.091167e-54 | -8.615850e-47 |
| Msa0383490 | Msa0427380 | 0.807253 | 5.533096e-50 | -8.615850e-47 |
| Msa0388540 | Msa0427380 | 0.881722 | 1.895316e-70 | -8.615850e-47 |
| Msa0421920 | Msa0427380 | 0.874913 | 4.655137e-68 | -8.615850e-47 |
| Msa0426820 | Msa0427380 | 0.857120 | 2.026922e-62 | -8.615850e-47 |
| Msa0427380 | Msa0467740 | 0.886896 | 2.294628e-72 | -8.615850e-47 |
| Msa0427380 | Msa0477670 | 0.825580 | 4.337365e-54 | -8.615850e-47 |
| Msa0427380 | Msa0482190 | 0.821890 | 3.173889e-53 | -8.615850e-47 |
| Msa0427380 | Msa0485500 | 0.816706 | 4.815508e-52 | -8.615850e-47 |
| Msa0427380 | Msa0514130 | 0.893465 | 6.129208e-75 | -8.615850e-47 |
| Msa0427380 | Msa0524340 | 0.800241 | 1.580417e-48 | -8.615850e-47 |
| Msa0427380 | Msa0543900 | -0.807061 | 6.073824e-50 | -8.615850e-47 |
| Msa0427380 | Msa0576600 | -0.800761 | 1.238323e-48 | -8.615850e-47 |
| Msa0427380 | Msa0599770 | -0.803487 | 3.405124e-49 | -8.615850e-47 |
| Msa0427380 | Msa0610380 | 0.819792 | 9.642911e-53 | -8.615850e-47 |
| Msa0427380 | Msa0617830 | -0.802592 | 5.215525e-49 | -8.615850e-47 |
| Msa0427380 | Msa0621190 | 0.824225 | 9.057307e-54 | -8.615850e-47 |
| Msa0427380 | Msa0640380 | -0.814194 | 1.744439e-51 | -8.615850e-47 |
| Msa0427380 | Msa0650910 | 0.810920 | 9.066334e-51 | -8.615850e-47 |
| Msa0427380 | Msa0656680 | -0.804125 | 2.510522e-49 | -8.615850e-47 |
| Msa0427380 | Msa0663330 | -0.873972 | 9.709586e-68 | -8.615850e-47 |
| Msa0427380 | Msa0664020 | -0.863930 | 1.750512e-64 | -8.615850e-47 |
| Msa0427380 | Msa0722930 | -0.826391 | 2.782992e-54 | -8.615850e-47 |
| Msa0427380 | Msa0723140 | -0.827357 | 1.635611e-54 | -8.615850e-47 |
| Msa0427380 | Msa0843280 | -0.806630 | 7.492160e-50 | -8.615850e-47 |
| Msa0427380 | Msa0876850 | 0.843715 | 1.181382e-58 | -8.615850e-47 |
| Msa0427380 | Msa0942080 | 0.851446 | 8.829943e-61 | -8.615850e-47 |
| Msa0427380 | Msa0987570 | 0.800314 | 1.527229e-48 | -8.615850e-47 |
| Msa0427380 | Msa0992490 | 0.802151 | 6.428808e-49 | -8.615850e-47 |
| Msa0427380 | Msa1027870 | 0.809088 | 2.249346e-50 | -8.615850e-47 |
| Msa0427380 | Msa1041600 | 0.801078 | 1.067078e-48 | -8.615850e-47 |
| Msa0427380 | Msa1075080 | 0.830254 | 3.256778e-55 | -8.615850e-47 |
| Msa0427380 | Msa1080790 | -0.802623 | 5.138559e-49 | -8.615850e-47 |
| Msa0427380 | Msa1084850 | 0.800673 | 1.290505e-48 | -8.615850e-47 |
| Msa0427380 | Msa1116130 | 0.811929 | 5.474481e-51 | -8.615850e-47 |
| Msa0427380 | Msa1118930 | -0.803444 | 3.475830e-49 | -8.615850e-47 |
| Msa0427380 | Msa1139000 | 0.809735 | 1.633573e-50 | -8.615850e-47 |
| Msa0427380 | Msa1141250 | 0.812084 | 5.065042e-51 | -8.615850e-47 |
| Msa0427380 | Msa1144630 | 0.805022 | 1.631202e-49 | -8.615850e-47 |
| Msa0427380 | Msa1165700 | 0.835357 | 1.758475e-56 | -8.615850e-47 |
| Msa0427380 | Msa1166500 | 0.800848 | 1.188588e-48 | -8.615850e-47 |
| Msa0427380 | Msa1208340 | -0.816579 | 5.143220e-52 | -8.615850e-47 |
| Msa0427380 | Msa1225150 | 0.800590 | 1.341874e-48 | -8.615850e-47 |
| Msa0427380 | Msa1225730 | 0.808414 | 3.133912e-50 | -8.615850e-47 |
| Msa0427380 | Msa1258380 | 0.820808 | 5.639232e-53 | -8.615850e-47 |
| Msa0427380 | Msa1265340 | 0.805442 | 1.332555e-49 | -8.615850e-47 |
| Msa0427380 | Msa1363930 | 0.801633 | 8.212162e-49 | -8.615850e-47 |
| Msa0427380 | Msa1364330 | 0.802222 | 6.213832e-49 | -8.615850e-47 |
| Msa0427380 | Msa1365040 | 0.815128 | 1.083353e-51 | -8.615850e-47 |
| Msa0427380 | Msa1366540 | 0.807733 | 4.376761e-50 | -8.615850e-47 |
| Msa0427380 | Msa1387750 | 0.838734 | 2.411493e-57 | -8.615850e-47 |
| Msa0427380 | Msa1438820 | -0.800227 | 1.590990e-48 | -8.615850e-47 |
| Msa0427380 | Msa1444250 | 0.811609 | 6.426280e-51 | -8.615850e-47 |
| Msa0427380 | Msa1457670 | 0.816875 | 4.413502e-52 | -8.615850e-47 |
| Msa0427380 | Msa1461810 | 0.801105 | 1.053248e-48 | -8.615850e-47 |
| Msa0427380 | Msa1465890 | 0.885265 | 9.439542e-72 | -8.615850e-47 |
| Msa0260270 | Msa0427380 | 0.813621 | 2.333290e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427380 | MtrunA17_Chr3g0129861 | 99.490 | 196 | 1 | 0 | 1 | 196 | 1 | 196 | 7.41e-147 | 412 |
| Msa0427380 | MtrunA17_Chr7g0268451 | 97.895 | 190 | 4 | 0 | 7 | 196 | 3 | 192 | 9.09e-140 | 394 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427380 | AT3G04770.2 | 90.860 | 186 | 17 | 0 | 7 | 192 | 9 | 194 | 2.25e-130 | 370 |
| Msa0427380 | AT1G72370.2 | 92.473 | 186 | 14 | 0 | 7 | 192 | 8 | 193 | 7.16e-130 | 370 |
| Msa0427380 | AT1G72370.1 | 92.473 | 186 | 14 | 0 | 7 | 192 | 8 | 193 | 9.28e-130 | 369 |
| Msa0427380 | AT3G04770.1 | 90.860 | 186 | 17 | 0 | 7 | 192 | 9 | 194 | 8.01e-129 | 369 |
Find 65 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAAAGCGAAATCGAAAT+TGG | 0.211260 | 3_2:-78073652 | None:intergenic |
| ATAGCATCGGTTGTCTCTTT+TGG | 0.249875 | 3_2:+78072898 | Msa0427380:CDS |
| TTCACCTGATGGTCAGTTCT+AGG | 0.303947 | 3_2:-78072618 | None:intergenic |
| GTTCAATCTGCAAGGCCTTA+TGG | 0.305597 | 3_2:+78072465 | Msa0427380:CDS |
| CAATTTGGCAGCTAGGGTTT+TGG | 0.305738 | 3_2:-78071437 | None:intergenic |
| GGTATTTATATCATTAATCT+TGG | 0.324341 | 3_2:+78072372 | Msa0427380:intron |
| GAAGGAAACTTGCATTTGAT+TGG | 0.347451 | 3_2:-78072565 | None:intergenic |
| ATTTGATTGGTAAAGGTTCC+AGG | 0.371234 | 3_2:-78072552 | None:intergenic |
| GGCACTCTGTGATAACAATT+TGG | 0.372842 | 3_2:-78071452 | None:intergenic |
| CATCAGCAGCCAACATCATC+TGG | 0.391970 | 3_2:-78071582 | None:intergenic |
| TCCAAGAGCAGCTTCCTTGA+TGG | 0.403359 | 3_2:-78072790 | None:intergenic |
| CCCATCAAGGAAGCTGCTCT+TGG | 0.405552 | 3_2:+78072789 | Msa0427380:CDS |
| AGGAAGTGAATCGAGGATAA+AGG | 0.410345 | 3_2:-78073572 | None:intergenic |
| TGCTTTCCCTTGTTGTTAGC+GGG | 0.413093 | 3_2:-78072876 | None:intergenic |
| CCAAGAGCAGCTTCCTTGAT+GGG | 0.417623 | 3_2:-78072789 | None:intergenic |
| TGAAGCAATAACGTTCCATT+TGG | 0.418662 | 3_2:-78071633 | None:intergenic |
| ACTGGAGCTAATGCTATTGC+AGG | 0.451070 | 3_2:+78072519 | Msa0427380:CDS |
| GTGATAACAATTTGGCAGCT+AGG | 0.461647 | 3_2:-78071444 | None:intergenic |
| CGGAGATTCGCTCCCGTCGC+CGG | 0.463684 | 3_2:+78071487 | Msa0427380:five_prime_UTR |
| AACTTGCATTTGATTGGTAA+AGG | 0.474388 | 3_2:-78072559 | None:intergenic |
| TGCTGTCTACTGCCGGCGAC+GGG | 0.474415 | 3_2:-78071499 | None:intergenic |
| CAGATTGAACAATAATGTCC+TGG | 0.474422 | 3_2:-78072452 | None:intergenic |
| TGATAACAATTTGGCAGCTA+GGG | 0.476595 | 3_2:-78071443 | None:intergenic |
| CTTAAGTTTGCTCAGTACAC+TGG | 0.477075 | 3_2:+78072501 | Msa0427380:CDS |
| TAAGAACTGCGACTTCCAAA+TGG | 0.482705 | 3_2:+78071618 | Msa0427380:CDS |
| CCAATGTCAACATATCTCAT+AGG | 0.485555 | 3_2:-78072849 | None:intergenic |
| AGAGTGCCGCATCCAAGTTT+CGG | 0.494133 | 3_2:+78071467 | Msa0427380:five_prime_UTR |
| GGGAGCGAATCTCCGAAACT+TGG | 0.496426 | 3_2:-78071479 | None:intergenic |
| AGAAACTTCAACTAGCTGCC+AGG | 0.503788 | 3_2:+78072406 | Msa0427380:CDS |
| ATGCTTTCCCTTGTTGTTAG+CGG | 0.513106 | 3_2:-78072877 | None:intergenic |
| CCTATGAGATATGTTGACAT+TGG | 0.514354 | 3_2:+78072849 | Msa0427380:CDS |
| TGATCCTAGAACTGACCATC+AGG | 0.519085 | 3_2:+78072614 | Msa0427380:CDS |
| AGAACGGCTCTCTGTCCATA+AGG | 0.525873 | 3_2:-78072480 | None:intergenic |
| TGCTTCAAACGCCGCAACGA+TGG | 0.530057 | 3_2:+78071649 | Msa0427380:CDS |
| GTGTCACAGAAAGCAATAGT+TGG | 0.533846 | 3_2:-78072819 | None:intergenic |
| GACATTAGAAGCGAATATCA+AGG | 0.536180 | 3_2:-78073592 | None:intergenic |
| AGATTGAACAATAATGTCCT+GGG | 0.542615 | 3_2:-78072451 | None:intergenic |
| TTGGACAAGAGAATTACGAT+TGG | 0.545072 | 3_2:-78073633 | None:intergenic |
| CAGTAGACAGCATTCAATCA+TGG | 0.547924 | 3_2:+78071510 | Msa0427380:exon |
| CTGACGGGATGAGAGCTGTT+CGG | 0.554474 | 3_2:-78071536 | None:intergenic |
| GATTGAATGCTGTCTACTGC+CGG | 0.554663 | 3_2:-78071506 | None:intergenic |
| CGCAGTTCTTAGTGCCGAGG+TGG | 0.555885 | 3_2:-78071606 | None:intergenic |
| ATGCTGTCTACTGCCGGCGA+CGG | 0.556796 | 3_2:-78071500 | None:intergenic |
| TGGAATTCCCGCTAACAACA+AGG | 0.570440 | 3_2:+78072869 | Msa0427380:CDS |
| TGTTTGTTTGCAGCCCATCA+AGG | 0.579519 | 3_2:+78072776 | Msa0427380:intron |
| ATGCGTGGTACTATTCGCCC+AGG | 0.584833 | 3_2:+78072945 | Msa0427380:CDS |
| CTCGATTGCAACGATGACCC+TGG | 0.587596 | 3_2:-78072424 | None:intergenic |
| GAGAAGACGAGGCTCACTGA+AGG | 0.589438 | 3_2:-78072583 | None:intergenic |
| AACAAGGGAAAGCATAGCAT+CGG | 0.599533 | 3_2:+78072885 | Msa0427380:CDS |
| GAAACTTCAACTAGCTGCCA+GGG | 0.600433 | 3_2:+78072407 | Msa0427380:CDS |
| ACATTATTGTTCAATCTGCA+AGG | 0.601975 | 3_2:+78072457 | Msa0427380:CDS |
| GAATCGAAAGAGTCATAGAA+CGG | 0.611201 | 3_2:-78073725 | None:intergenic |
| ATTGCAGGTAGACACACTCC+TGG | 0.622813 | 3_2:+78072534 | Msa0427380:CDS |
| TTTGAACGTTACCATCGTTG+CGG | 0.631932 | 3_2:-78071660 | None:intergenic |
| AGTCGCAGTTCTTAGTGCCG+AGG | 0.635317 | 3_2:-78071609 | None:intergenic |
| GGAATTCCCGCTAACAACAA+GGG | 0.640044 | 3_2:+78072870 | Msa0427380:CDS |
| AGCTGACATCCAGATGATGT+TGG | 0.641030 | 3_2:+78071573 | Msa0427380:CDS |
| GTACTGAGCAAACTTAAGAA+CGG | 0.651453 | 3_2:-78072496 | None:intergenic |
| GAATCTCCGAAACTTGGATG+CGG | 0.653436 | 3_2:-78071473 | None:intergenic |
| GATTGAACAATAATGTCCTG+GGG | 0.658645 | 3_2:-78072450 | None:intergenic |
| TCAGTGAGGATGAGAAGACG+AGG | 0.674872 | 3_2:-78072594 | None:intergenic |
| AATATCAAGGAAGTGAATCG+AGG | 0.680584 | 3_2:-78073579 | None:intergenic |
| TTGGCTGCTGATGTCCACCT+CGG | 0.712261 | 3_2:+78071592 | Msa0427380:CDS |
| ATTGAACAATAATGTCCTGG+GGG | 0.723405 | 3_2:-78072449 | None:intergenic |
| GGTCAGTTCTAGGATCAGTG+AGG | 0.760014 | 3_2:-78072608 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTTTTGTTTTAATTT+AGG | + | chr3_2:78072351-78072370 | Msa0427380:intron | 10.0% |
| !!! | TTTGTTTTTTGTTTTAATTT+AGG | + | chr3_2:78072351-78072370 | Msa0427380:intron | 10.0% |
| !!! | AGGATAATTAATTACAATTT+TGG | + | chr3_2:78071842-78071861 | Msa0427380:intron | 15.0% |
| !!! | CTTTTATATCATATAAGAAT+GGG | - | chr3_2:78073094-78073113 | None:intergenic | 15.0% |
| !!! | AGGATAATTAATTACAATTT+TGG | + | chr3_2:78071842-78071861 | Msa0427380:intron | 15.0% |
| !!! | CTTTTATATCATATAAGAAT+GGG | - | chr3_2:78073094-78073113 | None:intergenic | 15.0% |
| !!! | TTTTATAGGTTAAAGCTTAT+AGG | - | chr3_2:78072011-78072030 | None:intergenic | 20.0% |
| !! | AAAACTCATATTTAAGCTAA+TGG | - | chr3_2:78072146-78072165 | None:intergenic | 20.0% |
| !! | TTGTAATGATGATATAATCA+AGG | - | chr3_2:78072264-78072283 | None:intergenic | 20.0% |
| !! | GGTATTTATATCATTAATCT+TGG | + | chr3_2:78072372-78072391 | Msa0427380:intron | 20.0% |
| !!! | TTGCTTGTTAATATCAATTA+TGG | + | chr3_2:78072660-78072679 | Msa0427380:intron | 20.0% |
| !!! | GCTATATTTTTTGTTGTTTT+AGG | + | chr3_2:78072682-78072701 | Msa0427380:intron | 20.0% |
| !!! | CCTTTTATATCATATAAGAA+TGG | - | chr3_2:78073095-78073114 | None:intergenic | 20.0% |
| !! | CCATTCTTATATGATATAAA+AGG | + | chr3_2:78073092-78073111 | Msa0427380:intron | 20.0% |
| !! | ATTCAGAATATGTAAAATAG+AGG | + | chr3_2:78073187-78073206 | Msa0427380:intron | 20.0% |
| !! | TTACACCTATATATTCTAAT+AGG | - | chr3_2:78073266-78073285 | None:intergenic | 20.0% |
| !!! | TTTTATAGGTTAAAGCTTAT+AGG | - | chr3_2:78072011-78072030 | None:intergenic | 20.0% |
| !! | AAAACTCATATTTAAGCTAA+TGG | - | chr3_2:78072146-78072165 | None:intergenic | 20.0% |
| !! | TTGTAATGATGATATAATCA+AGG | - | chr3_2:78072264-78072283 | None:intergenic | 20.0% |
| !! | GGTATTTATATCATTAATCT+TGG | + | chr3_2:78072372-78072391 | Msa0427380:intron | 20.0% |
| !!! | TTGCTTGTTAATATCAATTA+TGG | + | chr3_2:78072660-78072679 | Msa0427380:intron | 20.0% |
| !!! | GCTATATTTTTTGTTGTTTT+AGG | + | chr3_2:78072682-78072701 | Msa0427380:intron | 20.0% |
| !!! | CCTTTTATATCATATAAGAA+TGG | - | chr3_2:78073095-78073114 | None:intergenic | 20.0% |
| !! | CCATTCTTATATGATATAAA+AGG | + | chr3_2:78073092-78073111 | Msa0427380:intron | 20.0% |
| !! | ATTCAGAATATGTAAAATAG+AGG | + | chr3_2:78073187-78073206 | Msa0427380:intron | 20.0% |
| !! | TTACACCTATATATTCTAAT+AGG | - | chr3_2:78073266-78073285 | None:intergenic | 20.0% |
| ! | ATTAAGAAACACAATACTAG+AGG | - | chr3_2:78071730-78071749 | None:intergenic | 25.0% |
| !! | TTAACAATCTAGTAGTTTGT+AGG | + | chr3_2:78071822-78071841 | Msa0427380:intron | 25.0% |
| !! | AATTCTGTAAAACGGTTTTT+AGG | + | chr3_2:78071909-78071928 | Msa0427380:intron | 25.0% |
| !!! | TTTGCCTTTTGTTTGTTTTA+CGG | + | chr3_2:78072184-78072203 | Msa0427380:intron | 25.0% |
| ! | TTATCCGTAAAACAAACAAA+AGG | - | chr3_2:78072191-78072210 | None:intergenic | 25.0% |
| ! | AATGTTCAGTAGACTAAATA+TGG | + | chr3_2:78072317-78072336 | Msa0427380:intron | 25.0% |
| ! | TCATTAATCTTGGAAAAACT+TGG | + | chr3_2:78072382-78072401 | Msa0427380:CDS | 25.0% |
| ! | CATTAATCTTGGAAAAACTT+GGG | + | chr3_2:78072383-78072402 | Msa0427380:CDS | 25.0% |
| ! | ATTAACAAGCAAACATGTTA+AGG | - | chr3_2:78072652-78072671 | None:intergenic | 25.0% |
| ! | GGCTTATATATTTCCTTTAT+TGG | + | chr3_2:78072703-78072722 | Msa0427380:intron | 25.0% |
| ! | TATGTAAAATAGAGGATTCA+AGG | + | chr3_2:78073195-78073214 | Msa0427380:intron | 25.0% |
| ! | AGATACATAGTTTAGTTACA+AGG | + | chr3_2:78073231-78073250 | Msa0427380:intron | 25.0% |
| ! | CTAGTCCTATTAGAATATAT+AGG | + | chr3_2:78073258-78073277 | Msa0427380:intron | 25.0% |
| ! | TTGTGAATTCTTTCTATTGA+TGG | - | chr3_2:78073336-78073355 | None:intergenic | 25.0% |
| ! | ATTAAGAAACACAATACTAG+AGG | - | chr3_2:78071730-78071749 | None:intergenic | 25.0% |
| !! | TTAACAATCTAGTAGTTTGT+AGG | + | chr3_2:78071822-78071841 | Msa0427380:intron | 25.0% |
| !! | AATTCTGTAAAACGGTTTTT+AGG | + | chr3_2:78071909-78071928 | Msa0427380:intron | 25.0% |
| !!! | TTTGCCTTTTGTTTGTTTTA+CGG | + | chr3_2:78072184-78072203 | Msa0427380:intron | 25.0% |
| ! | TTATCCGTAAAACAAACAAA+AGG | - | chr3_2:78072191-78072210 | None:intergenic | 25.0% |
| ! | AATGTTCAGTAGACTAAATA+TGG | + | chr3_2:78072317-78072336 | Msa0427380:intron | 25.0% |
| ! | TCATTAATCTTGGAAAAACT+TGG | + | chr3_2:78072382-78072401 | Msa0427380:CDS | 25.0% |
| ! | CATTAATCTTGGAAAAACTT+GGG | + | chr3_2:78072383-78072402 | Msa0427380:CDS | 25.0% |
| ! | ATTAACAAGCAAACATGTTA+AGG | - | chr3_2:78072652-78072671 | None:intergenic | 25.0% |
| ! | GGCTTATATATTTCCTTTAT+TGG | + | chr3_2:78072703-78072722 | Msa0427380:intron | 25.0% |
| ! | TATGTAAAATAGAGGATTCA+AGG | + | chr3_2:78073195-78073214 | Msa0427380:intron | 25.0% |
| ! | AGATACATAGTTTAGTTACA+AGG | + | chr3_2:78073231-78073250 | Msa0427380:intron | 25.0% |
| ! | CTAGTCCTATTAGAATATAT+AGG | + | chr3_2:78073258-78073277 | Msa0427380:intron | 25.0% |
| ! | TTGTGAATTCTTTCTATTGA+TGG | - | chr3_2:78073336-78073355 | None:intergenic | 25.0% |
| TGTTAAGAATCGAGATTAAG+TGG | + | chr3_2:78071778-78071797 | Msa0427380:intron | 30.0% | |
| ! | CTGTTTGGAATTCTGTAAAA+CGG | + | chr3_2:78071901-78071920 | Msa0427380:intron | 30.0% |
| !!! | CCAATGCTACACTTTTTTAT+AGG | - | chr3_2:78072025-78072044 | None:intergenic | 30.0% |
| ! | CCTATAAAAAAGTGTAGCAT+TGG | + | chr3_2:78072022-78072041 | Msa0427380:intron | 30.0% |
| ACAAACAAAAGGCAAAACTA+AGG | - | chr3_2:78072180-78072199 | None:intergenic | 30.0% | |
| ACACAAGGTGTAACTTAATT+GGG | - | chr3_2:78072234-78072253 | None:intergenic | 30.0% | |
| AACACAAGGTGTAACTTAAT+TGG | - | chr3_2:78072235-78072254 | None:intergenic | 30.0% | |
| ATTAAGTTACACCTTGTGTT+TGG | + | chr3_2:78072235-78072254 | Msa0427380:intron | 30.0% | |
| TTAAGTTACACCTTGTGTTT+GGG | + | chr3_2:78072236-78072255 | Msa0427380:intron | 30.0% | |
| AGATTGAACAATAATGTCCT+GGG | - | chr3_2:78072454-78072473 | None:intergenic | 30.0% | |
| ACATTATTGTTCAATCTGCA+AGG | + | chr3_2:78072457-78072476 | Msa0427380:CDS | 30.0% | |
| AACTTGCATTTGATTGGTAA+AGG | - | chr3_2:78072562-78072581 | None:intergenic | 30.0% | |
| AGCAAACATGTTAAGGATAA+TGG | - | chr3_2:78072645-78072664 | None:intergenic | 30.0% | |
| GCACAAATATCAACCAATAA+AGG | - | chr3_2:78072719-78072738 | None:intergenic | 30.0% | |
| !! | TTGTGCATTTCGCTTTTATA+AGG | + | chr3_2:78072733-78072752 | Msa0427380:intron | 30.0% |
| AAAGGCAAAGTAAAGAAACT+AGG | + | chr3_2:78073110-78073129 | Msa0427380:intron | 30.0% | |
| TGATACCATGATATGAAACA+TGG | - | chr3_2:78073385-78073404 | None:intergenic | 30.0% | |
| ! | TTCTTTTTCCTTTGTTCTTC+TGG | + | chr3_2:78073497-78073516 | Msa0427380:intron | 30.0% |
| AATCTGGAGAAACAGAATTA+GGG | - | chr3_2:78073530-78073549 | None:intergenic | 30.0% | |
| AAATCTGGAGAAACAGAATT+AGG | - | chr3_2:78073531-78073550 | None:intergenic | 30.0% | |
| ! | TAATTCTGTTTCTCCAGATT+TGG | + | chr3_2:78073530-78073549 | Msa0427380:intron | 30.0% |
| ATCAAAAGCGAAATCGAAAT+TGG | - | chr3_2:78073655-78073674 | None:intergenic | 30.0% | |
| TGTTAAGAATCGAGATTAAG+TGG | + | chr3_2:78071778-78071797 | Msa0427380:intron | 30.0% | |
| ! | CTGTTTGGAATTCTGTAAAA+CGG | + | chr3_2:78071901-78071920 | Msa0427380:intron | 30.0% |
| !!! | CCAATGCTACACTTTTTTAT+AGG | - | chr3_2:78072025-78072044 | None:intergenic | 30.0% |
| ! | CCTATAAAAAAGTGTAGCAT+TGG | + | chr3_2:78072022-78072041 | Msa0427380:intron | 30.0% |
| ACAAACAAAAGGCAAAACTA+AGG | - | chr3_2:78072180-78072199 | None:intergenic | 30.0% | |
| ACACAAGGTGTAACTTAATT+GGG | - | chr3_2:78072234-78072253 | None:intergenic | 30.0% | |
| AACACAAGGTGTAACTTAAT+TGG | - | chr3_2:78072235-78072254 | None:intergenic | 30.0% | |
| ATTAAGTTACACCTTGTGTT+TGG | + | chr3_2:78072235-78072254 | Msa0427380:intron | 30.0% | |
| TTAAGTTACACCTTGTGTTT+GGG | + | chr3_2:78072236-78072255 | Msa0427380:intron | 30.0% | |
| AGATTGAACAATAATGTCCT+GGG | - | chr3_2:78072454-78072473 | None:intergenic | 30.0% | |
| ACATTATTGTTCAATCTGCA+AGG | + | chr3_2:78072457-78072476 | Msa0427380:CDS | 30.0% | |
| AACTTGCATTTGATTGGTAA+AGG | - | chr3_2:78072562-78072581 | None:intergenic | 30.0% | |
| AGCAAACATGTTAAGGATAA+TGG | - | chr3_2:78072645-78072664 | None:intergenic | 30.0% | |
| GCACAAATATCAACCAATAA+AGG | - | chr3_2:78072719-78072738 | None:intergenic | 30.0% | |
| !! | TTGTGCATTTCGCTTTTATA+AGG | + | chr3_2:78072733-78072752 | Msa0427380:intron | 30.0% |
| AAAGGCAAAGTAAAGAAACT+AGG | + | chr3_2:78073110-78073129 | Msa0427380:intron | 30.0% | |
| TGATACCATGATATGAAACA+TGG | - | chr3_2:78073385-78073404 | None:intergenic | 30.0% | |
| ! | TTCTTTTTCCTTTGTTCTTC+TGG | + | chr3_2:78073497-78073516 | Msa0427380:intron | 30.0% |
| AATCTGGAGAAACAGAATTA+GGG | - | chr3_2:78073530-78073549 | None:intergenic | 30.0% | |
| AAATCTGGAGAAACAGAATT+AGG | - | chr3_2:78073531-78073550 | None:intergenic | 30.0% | |
| ! | TAATTCTGTTTCTCCAGATT+TGG | + | chr3_2:78073530-78073549 | Msa0427380:intron | 30.0% |
| ATCAAAAGCGAAATCGAAAT+TGG | - | chr3_2:78073655-78073674 | None:intergenic | 30.0% | |
| TGATAACAATTTGGCAGCTA+GGG | - | chr3_2:78071446-78071465 | None:intergenic | 35.0% | |
| TGAAGCAATAACGTTCCATT+TGG | - | chr3_2:78071636-78071655 | None:intergenic | 35.0% | |
| ATTGAACAATAATGTCCTGG+GGG | - | chr3_2:78072452-78072471 | None:intergenic | 35.0% | |
| GATTGAACAATAATGTCCTG+GGG | - | chr3_2:78072453-78072472 | None:intergenic | 35.0% | |
| CAGATTGAACAATAATGTCC+TGG | - | chr3_2:78072455-78072474 | None:intergenic | 35.0% | |
| GTACTGAGCAAACTTAAGAA+CGG | - | chr3_2:78072499-78072518 | None:intergenic | 35.0% | |
| ATTTGATTGGTAAAGGTTCC+AGG | - | chr3_2:78072555-78072574 | None:intergenic | 35.0% | |
| GAAGGAAACTTGCATTTGAT+TGG | - | chr3_2:78072568-78072587 | None:intergenic | 35.0% | |
| CCAATGTCAACATATCTCAT+AGG | - | chr3_2:78072852-78072871 | None:intergenic | 35.0% | |
| CCTATGAGATATGTTGACAT+TGG | + | chr3_2:78072849-78072868 | Msa0427380:CDS | 35.0% | |
| AAAGTAAAGAAACTAGGAGG+AGG | + | chr3_2:78073116-78073135 | Msa0427380:intron | 35.0% | |
| CATATTCTGAATTTCCAAGC+TGG | - | chr3_2:78073179-78073198 | None:intergenic | 35.0% | |
| AGAAAGTTAACCCACTTATG+GGG | - | chr3_2:78073292-78073311 | None:intergenic | 35.0% | |
| GAGAAAGTTAACCCACTTAT+GGG | - | chr3_2:78073293-78073312 | None:intergenic | 35.0% | |
| TGAGAAAGTTAACCCACTTA+TGG | - | chr3_2:78073294-78073313 | None:intergenic | 35.0% | |
| TCATGGTATCAGAGCAAAAT+TGG | + | chr3_2:78073394-78073413 | Msa0427380:intron | 35.0% | |
| AAAATTGGTATCCACCTTGA+AGG | + | chr3_2:78073409-78073428 | Msa0427380:intron | 35.0% | |
| ! | TATTTTCCGCTGCATTTTCT+TGG | + | chr3_2:78073433-78073452 | Msa0427380:intron | 35.0% |
| ! | ATTTTCCGCTGCATTTTCTT+GGG | + | chr3_2:78073434-78073453 | Msa0427380:intron | 35.0% |
| ! | ATTTTCCCAAGAAAATGCAG+CGG | - | chr3_2:78073442-78073461 | None:intergenic | 35.0% |
| ! | GATTTTCTCCAGAAGAACAA+AGG | - | chr3_2:78073508-78073527 | None:intergenic | 35.0% |
| AATATCAAGGAAGTGAATCG+AGG | - | chr3_2:78073582-78073601 | None:intergenic | 35.0% | |
| GACATTAGAAGCGAATATCA+AGG | - | chr3_2:78073595-78073614 | None:intergenic | 35.0% | |
| TTGGACAAGAGAATTACGAT+TGG | - | chr3_2:78073636-78073655 | None:intergenic | 35.0% | |
| GAATCGAAAGAGTCATAGAA+CGG | - | chr3_2:78073728-78073747 | None:intergenic | 35.0% | |
| TGATAACAATTTGGCAGCTA+GGG | - | chr3_2:78071446-78071465 | None:intergenic | 35.0% | |
| TGAAGCAATAACGTTCCATT+TGG | - | chr3_2:78071636-78071655 | None:intergenic | 35.0% | |
| ATTGAACAATAATGTCCTGG+GGG | - | chr3_2:78072452-78072471 | None:intergenic | 35.0% | |
| GATTGAACAATAATGTCCTG+GGG | - | chr3_2:78072453-78072472 | None:intergenic | 35.0% | |
| CAGATTGAACAATAATGTCC+TGG | - | chr3_2:78072455-78072474 | None:intergenic | 35.0% | |
| GTACTGAGCAAACTTAAGAA+CGG | - | chr3_2:78072499-78072518 | None:intergenic | 35.0% | |
| ATTTGATTGGTAAAGGTTCC+AGG | - | chr3_2:78072555-78072574 | None:intergenic | 35.0% | |
| GAAGGAAACTTGCATTTGAT+TGG | - | chr3_2:78072568-78072587 | None:intergenic | 35.0% | |
| CCAATGTCAACATATCTCAT+AGG | - | chr3_2:78072852-78072871 | None:intergenic | 35.0% | |
| CCTATGAGATATGTTGACAT+TGG | + | chr3_2:78072849-78072868 | Msa0427380:CDS | 35.0% | |
| AAAGTAAAGAAACTAGGAGG+AGG | + | chr3_2:78073116-78073135 | Msa0427380:intron | 35.0% | |
| CATATTCTGAATTTCCAAGC+TGG | - | chr3_2:78073179-78073198 | None:intergenic | 35.0% | |
| AGAAAGTTAACCCACTTATG+GGG | - | chr3_2:78073292-78073311 | None:intergenic | 35.0% | |
| GAGAAAGTTAACCCACTTAT+GGG | - | chr3_2:78073293-78073312 | None:intergenic | 35.0% | |
| TGAGAAAGTTAACCCACTTA+TGG | - | chr3_2:78073294-78073313 | None:intergenic | 35.0% | |
| TCATGGTATCAGAGCAAAAT+TGG | + | chr3_2:78073394-78073413 | Msa0427380:intron | 35.0% | |
| AAAATTGGTATCCACCTTGA+AGG | + | chr3_2:78073409-78073428 | Msa0427380:intron | 35.0% | |
| ! | TATTTTCCGCTGCATTTTCT+TGG | + | chr3_2:78073433-78073452 | Msa0427380:intron | 35.0% |
| ! | ATTTTCCGCTGCATTTTCTT+GGG | + | chr3_2:78073434-78073453 | Msa0427380:intron | 35.0% |
| ! | ATTTTCCCAAGAAAATGCAG+CGG | - | chr3_2:78073442-78073461 | None:intergenic | 35.0% |
| ! | GATTTTCTCCAGAAGAACAA+AGG | - | chr3_2:78073508-78073527 | None:intergenic | 35.0% |
| AATATCAAGGAAGTGAATCG+AGG | - | chr3_2:78073582-78073601 | None:intergenic | 35.0% | |
| GACATTAGAAGCGAATATCA+AGG | - | chr3_2:78073595-78073614 | None:intergenic | 35.0% | |
| TTGGACAAGAGAATTACGAT+TGG | - | chr3_2:78073636-78073655 | None:intergenic | 35.0% | |
| GAATCGAAAGAGTCATAGAA+CGG | - | chr3_2:78073728-78073747 | None:intergenic | 35.0% | |
| GTGATAACAATTTGGCAGCT+AGG | - | chr3_2:78071447-78071466 | None:intergenic | 40.0% | |
| GGCACTCTGTGATAACAATT+TGG | - | chr3_2:78071455-78071474 | None:intergenic | 40.0% | |
| CAGTAGACAGCATTCAATCA+TGG | + | chr3_2:78071510-78071529 | Msa0427380:exon | 40.0% | |
| !! | TTCTTTTTGAGAGAGCTGAC+GGG | - | chr3_2:78071554-78071573 | None:intergenic | 40.0% |
| !! | CTTCTTTTTGAGAGAGCTGA+CGG | - | chr3_2:78071555-78071574 | None:intergenic | 40.0% |
| TAAGAACTGCGACTTCCAAA+TGG | + | chr3_2:78071618-78071637 | Msa0427380:CDS | 40.0% | |
| TTTGAACGTTACCATCGTTG+CGG | - | chr3_2:78071663-78071682 | None:intergenic | 40.0% | |
| ! | GTTGCACTTTCATTTTGTGC+TGG | + | chr3_2:78071876-78071895 | Msa0427380:intron | 40.0% |
| !! | AACGGTTTTTAGGCACTGTT+TGG | + | chr3_2:78071919-78071938 | Msa0427380:intron | 40.0% |
| !! | TTTTAGGCACTGTTTGGTAG+CGG | + | chr3_2:78071925-78071944 | Msa0427380:intron | 40.0% |
| GGCAAAACTAAGGATCTGTT+TGG | - | chr3_2:78072170-78072189 | None:intergenic | 40.0% | |
| AATCAAGGAACCCAAACACA+AGG | - | chr3_2:78072249-78072268 | None:intergenic | 40.0% | |
| ! | CTTAAGTTTGCTCAGTACAC+TGG | + | chr3_2:78072501-78072520 | Msa0427380:CDS | 40.0% |
| ! | AGGATAATGGTTTCACCTGA+TGG | - | chr3_2:78072632-78072651 | None:intergenic | 40.0% |
| GTGTCACAGAAAGCAATAGT+TGG | - | chr3_2:78072822-78072841 | None:intergenic | 40.0% | |
| !! | ATGCTTTCCCTTGTTGTTAG+CGG | - | chr3_2:78072880-78072899 | None:intergenic | 40.0% |
| ! | AACAAGGGAAAGCATAGCAT+CGG | + | chr3_2:78072885-78072904 | Msa0427380:CDS | 40.0% |
| !!! | ATAGCATCGGTTGTCTCTTT+TGG | + | chr3_2:78072898-78072917 | Msa0427380:CDS | 40.0% |
| GGCAAAGTAAAGAAACTAGG+AGG | + | chr3_2:78073113-78073132 | Msa0427380:intron | 40.0% | |
| TAAAGAAACTAGGAGGAGGA+TGG | + | chr3_2:78073120-78073139 | Msa0427380:intron | 40.0% | |
| ! | GCTTTTCTCTCCTTCATCAA+TGG | + | chr3_2:78073356-78073375 | Msa0427380:intron | 40.0% |
| AACATGGCATCCATTGATGA+AGG | - | chr3_2:78073369-78073388 | None:intergenic | 40.0% | |
| GGATGCCATGTTTCATATCA+TGG | + | chr3_2:78073377-78073396 | Msa0427380:intron | 40.0% | |
| GTAGAAGAAGAAGCCAAATC+TGG | - | chr3_2:78073546-78073565 | None:intergenic | 40.0% | |
| AGGAAGTGAATCGAGGATAA+AGG | - | chr3_2:78073575-78073594 | None:intergenic | 40.0% | |
| GTGATAACAATTTGGCAGCT+AGG | - | chr3_2:78071447-78071466 | None:intergenic | 40.0% | |
| GGCACTCTGTGATAACAATT+TGG | - | chr3_2:78071455-78071474 | None:intergenic | 40.0% | |
| CAGTAGACAGCATTCAATCA+TGG | + | chr3_2:78071510-78071529 | Msa0427380:exon | 40.0% | |
| !! | TTCTTTTTGAGAGAGCTGAC+GGG | - | chr3_2:78071554-78071573 | None:intergenic | 40.0% |
| !! | CTTCTTTTTGAGAGAGCTGA+CGG | - | chr3_2:78071555-78071574 | None:intergenic | 40.0% |
| TAAGAACTGCGACTTCCAAA+TGG | + | chr3_2:78071618-78071637 | Msa0427380:CDS | 40.0% | |
| TTTGAACGTTACCATCGTTG+CGG | - | chr3_2:78071663-78071682 | None:intergenic | 40.0% | |
| ! | GTTGCACTTTCATTTTGTGC+TGG | + | chr3_2:78071876-78071895 | Msa0427380:intron | 40.0% |
| !! | AACGGTTTTTAGGCACTGTT+TGG | + | chr3_2:78071919-78071938 | Msa0427380:intron | 40.0% |
| !! | TTTTAGGCACTGTTTGGTAG+CGG | + | chr3_2:78071925-78071944 | Msa0427380:intron | 40.0% |
| GGCAAAACTAAGGATCTGTT+TGG | - | chr3_2:78072170-78072189 | None:intergenic | 40.0% | |
| AATCAAGGAACCCAAACACA+AGG | - | chr3_2:78072249-78072268 | None:intergenic | 40.0% | |
| ! | CTTAAGTTTGCTCAGTACAC+TGG | + | chr3_2:78072501-78072520 | Msa0427380:CDS | 40.0% |
| ! | AGGATAATGGTTTCACCTGA+TGG | - | chr3_2:78072632-78072651 | None:intergenic | 40.0% |
| GTGTCACAGAAAGCAATAGT+TGG | - | chr3_2:78072822-78072841 | None:intergenic | 40.0% | |
| !! | ATGCTTTCCCTTGTTGTTAG+CGG | - | chr3_2:78072880-78072899 | None:intergenic | 40.0% |
| ! | AACAAGGGAAAGCATAGCAT+CGG | + | chr3_2:78072885-78072904 | Msa0427380:CDS | 40.0% |
| !!! | ATAGCATCGGTTGTCTCTTT+TGG | + | chr3_2:78072898-78072917 | Msa0427380:CDS | 40.0% |
| GGCAAAGTAAAGAAACTAGG+AGG | + | chr3_2:78073113-78073132 | Msa0427380:intron | 40.0% | |
| TAAAGAAACTAGGAGGAGGA+TGG | + | chr3_2:78073120-78073139 | Msa0427380:intron | 40.0% | |
| ! | GCTTTTCTCTCCTTCATCAA+TGG | + | chr3_2:78073356-78073375 | Msa0427380:intron | 40.0% |
| AACATGGCATCCATTGATGA+AGG | - | chr3_2:78073369-78073388 | None:intergenic | 40.0% | |
| GGATGCCATGTTTCATATCA+TGG | + | chr3_2:78073377-78073396 | Msa0427380:intron | 40.0% | |
| GTAGAAGAAGAAGCCAAATC+TGG | - | chr3_2:78073546-78073565 | None:intergenic | 40.0% | |
| AGGAAGTGAATCGAGGATAA+AGG | - | chr3_2:78073575-78073594 | None:intergenic | 40.0% | |
| ! | CAATTTGGCAGCTAGGGTTT+TGG | - | chr3_2:78071440-78071459 | None:intergenic | 45.0% |
| GAATCTCCGAAACTTGGATG+CGG | - | chr3_2:78071476-78071495 | None:intergenic | 45.0% | |
| GATTGAATGCTGTCTACTGC+CGG | - | chr3_2:78071509-78071528 | None:intergenic | 45.0% | |
| AGCTGACATCCAGATGATGT+TGG | + | chr3_2:78071573-78071592 | Msa0427380:CDS | 45.0% | |
| !!! | CATTTTGTGCTGGCTCTGTT+TGG | + | chr3_2:78071886-78071905 | Msa0427380:intron | 45.0% |
| AGAAACTTCAACTAGCTGCC+AGG | + | chr3_2:78072406-78072425 | Msa0427380:CDS | 45.0% | |
| GAAACTTCAACTAGCTGCCA+GGG | + | chr3_2:78072407-78072426 | Msa0427380:CDS | 45.0% | |
| GTTCAATCTGCAAGGCCTTA+TGG | + | chr3_2:78072465-78072484 | Msa0427380:CDS | 45.0% | |
| ACTGGAGCTAATGCTATTGC+AGG | + | chr3_2:78072519-78072538 | Msa0427380:CDS | 45.0% | |
| TGATCCTAGAACTGACCATC+AGG | + | chr3_2:78072614-78072633 | Msa0427380:CDS | 45.0% | |
| TTCACCTGATGGTCAGTTCT+AGG | - | chr3_2:78072621-78072640 | None:intergenic | 45.0% | |
| TGTTTGTTTGCAGCCCATCA+AGG | + | chr3_2:78072776-78072795 | Msa0427380:intron | 45.0% | |
| TGGAATTCCCGCTAACAACA+AGG | + | chr3_2:78072869-78072888 | Msa0427380:CDS | 45.0% | |
| GGAATTCCCGCTAACAACAA+GGG | + | chr3_2:78072870-78072889 | Msa0427380:CDS | 45.0% | |
| !! | TGCTTTCCCTTGTTGTTAGC+GGG | - | chr3_2:78072879-78072898 | None:intergenic | 45.0% |
| !!! | CGGTTGTCTCTTTTGGCTTT+TGG | + | chr3_2:78072905-78072924 | Msa0427380:CDS | 45.0% |
| !!! | GTCTCTTTTGGCTTTTGGCT+AGG | + | chr3_2:78072910-78072929 | Msa0427380:CDS | 45.0% |
| !!! | CTTTTGGCTTTTGGCTAGGA+TGG | + | chr3_2:78072914-78072933 | Msa0427380:CDS | 45.0% |
| TATTCGCCCAGGTCTTAAGT+GGG | + | chr3_2:78072956-78072975 | Msa0427380:intron | 45.0% | |
| TCACATCCCACTTAAGACCT+GGG | - | chr3_2:78072965-78072984 | None:intergenic | 45.0% | |
| ATCACATCCCACTTAAGACC+TGG | - | chr3_2:78072966-78072985 | None:intergenic | 45.0% | |
| AGGTCTTAAGTGGGATGTGA+TGG | + | chr3_2:78072965-78072984 | Msa0427380:intron | 45.0% | |
| ! | CTCTTGTTCTTTTGCCAGCT+TGG | + | chr3_2:78073162-78073181 | Msa0427380:intron | 45.0% |
| AAGTTAACCCACTTATGGGG+AGG | - | chr3_2:78073289-78073308 | None:intergenic | 45.0% | |
| GCGGAAAATATCCTTCAAGG+TGG | - | chr3_2:78073423-78073442 | None:intergenic | 45.0% | |
| GCAGCGGAAAATATCCTTCA+AGG | - | chr3_2:78073426-78073445 | None:intergenic | 45.0% | |
| ! | CAATTTGGCAGCTAGGGTTT+TGG | - | chr3_2:78071440-78071459 | None:intergenic | 45.0% |
| GAATCTCCGAAACTTGGATG+CGG | - | chr3_2:78071476-78071495 | None:intergenic | 45.0% | |
| GATTGAATGCTGTCTACTGC+CGG | - | chr3_2:78071509-78071528 | None:intergenic | 45.0% | |
| AGCTGACATCCAGATGATGT+TGG | + | chr3_2:78071573-78071592 | Msa0427380:CDS | 45.0% | |
| !!! | CATTTTGTGCTGGCTCTGTT+TGG | + | chr3_2:78071886-78071905 | Msa0427380:intron | 45.0% |
| AGAAACTTCAACTAGCTGCC+AGG | + | chr3_2:78072406-78072425 | Msa0427380:CDS | 45.0% | |
| GAAACTTCAACTAGCTGCCA+GGG | + | chr3_2:78072407-78072426 | Msa0427380:CDS | 45.0% | |
| GTTCAATCTGCAAGGCCTTA+TGG | + | chr3_2:78072465-78072484 | Msa0427380:CDS | 45.0% | |
| ACTGGAGCTAATGCTATTGC+AGG | + | chr3_2:78072519-78072538 | Msa0427380:CDS | 45.0% | |
| TGATCCTAGAACTGACCATC+AGG | + | chr3_2:78072614-78072633 | Msa0427380:CDS | 45.0% | |
| TTCACCTGATGGTCAGTTCT+AGG | - | chr3_2:78072621-78072640 | None:intergenic | 45.0% | |
| TGTTTGTTTGCAGCCCATCA+AGG | + | chr3_2:78072776-78072795 | Msa0427380:intron | 45.0% | |
| TGGAATTCCCGCTAACAACA+AGG | + | chr3_2:78072869-78072888 | Msa0427380:CDS | 45.0% | |
| GGAATTCCCGCTAACAACAA+GGG | + | chr3_2:78072870-78072889 | Msa0427380:CDS | 45.0% | |
| !! | TGCTTTCCCTTGTTGTTAGC+GGG | - | chr3_2:78072879-78072898 | None:intergenic | 45.0% |
| !!! | CGGTTGTCTCTTTTGGCTTT+TGG | + | chr3_2:78072905-78072924 | Msa0427380:CDS | 45.0% |
| !!! | GTCTCTTTTGGCTTTTGGCT+AGG | + | chr3_2:78072910-78072929 | Msa0427380:CDS | 45.0% |
| !!! | CTTTTGGCTTTTGGCTAGGA+TGG | + | chr3_2:78072914-78072933 | Msa0427380:CDS | 45.0% |
| TATTCGCCCAGGTCTTAAGT+GGG | + | chr3_2:78072956-78072975 | Msa0427380:intron | 45.0% | |
| TCACATCCCACTTAAGACCT+GGG | - | chr3_2:78072965-78072984 | None:intergenic | 45.0% | |
| ATCACATCCCACTTAAGACC+TGG | - | chr3_2:78072966-78072985 | None:intergenic | 45.0% | |
| AGGTCTTAAGTGGGATGTGA+TGG | + | chr3_2:78072965-78072984 | Msa0427380:intron | 45.0% | |
| ! | CTCTTGTTCTTTTGCCAGCT+TGG | + | chr3_2:78073162-78073181 | Msa0427380:intron | 45.0% |
| AAGTTAACCCACTTATGGGG+AGG | - | chr3_2:78073289-78073308 | None:intergenic | 45.0% | |
| GCGGAAAATATCCTTCAAGG+TGG | - | chr3_2:78073423-78073442 | None:intergenic | 45.0% | |
| GCAGCGGAAAATATCCTTCA+AGG | - | chr3_2:78073426-78073445 | None:intergenic | 45.0% | |
| !! | AGAGTGCCGCATCCAAGTTT+CGG | + | chr3_2:78071467-78071486 | Msa0427380:five_prime_UTR | 50.0% |
| CATCAGCAGCCAACATCATC+TGG | - | chr3_2:78071585-78071604 | None:intergenic | 50.0% | |
| AGAACGGCTCTCTGTCCATA+AGG | - | chr3_2:78072483-78072502 | None:intergenic | 50.0% | |
| ATTGCAGGTAGACACACTCC+TGG | + | chr3_2:78072534-78072553 | Msa0427380:CDS | 50.0% | |
| TCAGTGAGGATGAGAAGACG+AGG | - | chr3_2:78072597-78072616 | None:intergenic | 50.0% | |
| !! | GGTCAGTTCTAGGATCAGTG+AGG | - | chr3_2:78072611-78072630 | None:intergenic | 50.0% |
| CCAAGAGCAGCTTCCTTGAT+GGG | - | chr3_2:78072792-78072811 | None:intergenic | 50.0% | |
| TCCAAGAGCAGCTTCCTTGA+TGG | - | chr3_2:78072793-78072812 | None:intergenic | 50.0% | |
| !! | AGGATGGTTTTGCAGATGCG+TGG | + | chr3_2:78072930-78072949 | Msa0427380:CDS | 50.0% |
| CTATTCGCCCAGGTCTTAAG+TGG | + | chr3_2:78072955-78072974 | Msa0427380:intron | 50.0% | |
| AGGTGTAACCTCCCCATAAG+TGG | + | chr3_2:78073278-78073297 | Msa0427380:intron | 50.0% | |
| GGTGTAACCTCCCCATAAGT+GGG | + | chr3_2:78073279-78073298 | Msa0427380:intron | 50.0% | |
| !! | AGAGTGCCGCATCCAAGTTT+CGG | + | chr3_2:78071467-78071486 | Msa0427380:five_prime_UTR | 50.0% |
| CATCAGCAGCCAACATCATC+TGG | - | chr3_2:78071585-78071604 | None:intergenic | 50.0% | |
| AGAACGGCTCTCTGTCCATA+AGG | - | chr3_2:78072483-78072502 | None:intergenic | 50.0% | |
| ATTGCAGGTAGACACACTCC+TGG | + | chr3_2:78072534-78072553 | Msa0427380:CDS | 50.0% | |
| TCAGTGAGGATGAGAAGACG+AGG | - | chr3_2:78072597-78072616 | None:intergenic | 50.0% | |
| !! | GGTCAGTTCTAGGATCAGTG+AGG | - | chr3_2:78072611-78072630 | None:intergenic | 50.0% |
| CCAAGAGCAGCTTCCTTGAT+GGG | - | chr3_2:78072792-78072811 | None:intergenic | 50.0% | |
| TCCAAGAGCAGCTTCCTTGA+TGG | - | chr3_2:78072793-78072812 | None:intergenic | 50.0% | |
| !! | AGGATGGTTTTGCAGATGCG+TGG | + | chr3_2:78072930-78072949 | Msa0427380:CDS | 50.0% |
| CTATTCGCCCAGGTCTTAAG+TGG | + | chr3_2:78072955-78072974 | Msa0427380:intron | 50.0% | |
| AGGTGTAACCTCCCCATAAG+TGG | + | chr3_2:78073278-78073297 | Msa0427380:intron | 50.0% | |
| GGTGTAACCTCCCCATAAGT+GGG | + | chr3_2:78073279-78073298 | Msa0427380:intron | 50.0% | |
| GGGAGCGAATCTCCGAAACT+TGG | - | chr3_2:78071482-78071501 | None:intergenic | 55.0% | |
| CTGACGGGATGAGAGCTGTT+CGG | - | chr3_2:78071539-78071558 | None:intergenic | 55.0% | |
| TTGGCTGCTGATGTCCACCT+CGG | + | chr3_2:78071592-78071611 | Msa0427380:CDS | 55.0% | |
| AGTCGCAGTTCTTAGTGCCG+AGG | - | chr3_2:78071612-78071631 | None:intergenic | 55.0% | |
| TGCTTCAAACGCCGCAACGA+TGG | + | chr3_2:78071649-78071668 | Msa0427380:CDS | 55.0% | |
| CTCGATTGCAACGATGACCC+TGG | - | chr3_2:78072427-78072446 | None:intergenic | 55.0% | |
| GAGAAGACGAGGCTCACTGA+AGG | - | chr3_2:78072586-78072605 | None:intergenic | 55.0% | |
| CCCATCAAGGAAGCTGCTCT+TGG | + | chr3_2:78072789-78072808 | Msa0427380:CDS | 55.0% | |
| ATGCGTGGTACTATTCGCCC+AGG | + | chr3_2:78072945-78072964 | Msa0427380:CDS | 55.0% | |
| GGGAGCGAATCTCCGAAACT+TGG | - | chr3_2:78071482-78071501 | None:intergenic | 55.0% | |
| CTGACGGGATGAGAGCTGTT+CGG | - | chr3_2:78071539-78071558 | None:intergenic | 55.0% | |
| TTGGCTGCTGATGTCCACCT+CGG | + | chr3_2:78071592-78071611 | Msa0427380:CDS | 55.0% | |
| AGTCGCAGTTCTTAGTGCCG+AGG | - | chr3_2:78071612-78071631 | None:intergenic | 55.0% | |
| TGCTTCAAACGCCGCAACGA+TGG | + | chr3_2:78071649-78071668 | Msa0427380:CDS | 55.0% | |
| CTCGATTGCAACGATGACCC+TGG | - | chr3_2:78072427-78072446 | None:intergenic | 55.0% | |
| GAGAAGACGAGGCTCACTGA+AGG | - | chr3_2:78072586-78072605 | None:intergenic | 55.0% | |
| CCCATCAAGGAAGCTGCTCT+TGG | + | chr3_2:78072789-78072808 | Msa0427380:CDS | 55.0% | |
| ATGCGTGGTACTATTCGCCC+AGG | + | chr3_2:78072945-78072964 | Msa0427380:CDS | 55.0% | |
| ATGCTGTCTACTGCCGGCGA+CGG | - | chr3_2:78071503-78071522 | None:intergenic | 60.0% | |
| ! | CGCAGTTCTTAGTGCCGAGG+TGG | - | chr3_2:78071609-78071628 | None:intergenic | 60.0% |
| CGTTGCAATCGAGAACCCCC+AGG | + | chr3_2:78072434-78072453 | Msa0427380:CDS | 60.0% | |
| ATGCTGTCTACTGCCGGCGA+CGG | - | chr3_2:78071503-78071522 | None:intergenic | 60.0% | |
| ! | CGCAGTTCTTAGTGCCGAGG+TGG | - | chr3_2:78071609-78071628 | None:intergenic | 60.0% |
| CGTTGCAATCGAGAACCCCC+AGG | + | chr3_2:78072434-78072453 | Msa0427380:CDS | 60.0% | |
| TGCTGTCTACTGCCGGCGAC+GGG | - | chr3_2:78071502-78071521 | None:intergenic | 65.0% | |
| TGCTGTCTACTGCCGGCGAC+GGG | - | chr3_2:78071502-78071521 | None:intergenic | 65.0% | |
| CGGAGATTCGCTCCCGTCGC+CGG | + | chr3_2:78071487-78071506 | Msa0427380:five_prime_UTR | 70.0% | |
| CGGAGATTCGCTCCCGTCGC+CGG | + | chr3_2:78071487-78071506 | Msa0427380:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 78071433 | 78073755 | 78071433 | ID=Msa0427380;Name=Msa0427380 |
| chr3_2 | mRNA | 78071433 | 78073755 | 78071433 | ID=Msa0427380-mRNA-1;Parent=Msa0427380;Name=Msa0427380-mRNA-1;_AED=0.24;_eAED=0.24;_QI=96|0.66|0.5|0.75|1|1|4|0|263 |
| chr3_2 | exon | 78071433 | 78071670 | 78071433 | ID=Msa0427380-mRNA-1:exon:20478;Parent=Msa0427380-mRNA-1 |
| chr3_2 | exon | 78072373 | 78072635 | 78072373 | ID=Msa0427380-mRNA-1:exon:20479;Parent=Msa0427380-mRNA-1 |
| chr3_2 | exon | 78072789 | 78072966 | 78072789 | ID=Msa0427380-mRNA-1:exon:20480;Parent=Msa0427380-mRNA-1 |
| chr3_2 | exon | 78073547 | 78073755 | 78073547 | ID=Msa0427380-mRNA-1:exon:20481;Parent=Msa0427380-mRNA-1 |
| chr3_2 | five_prime_UTR | 78071433 | 78071528 | 78071433 | ID=Msa0427380-mRNA-1:five_prime_utr;Parent=Msa0427380-mRNA-1 |
| chr3_2 | CDS | 78071529 | 78071670 | 78071529 | ID=Msa0427380-mRNA-1:cds;Parent=Msa0427380-mRNA-1 |
| chr3_2 | CDS | 78072373 | 78072635 | 78072373 | ID=Msa0427380-mRNA-1:cds;Parent=Msa0427380-mRNA-1 |
| chr3_2 | CDS | 78072789 | 78072966 | 78072789 | ID=Msa0427380-mRNA-1:cds;Parent=Msa0427380-mRNA-1 |
| chr3_2 | CDS | 78073547 | 78073755 | 78073547 | ID=Msa0427380-mRNA-1:cds;Parent=Msa0427380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
