AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1038930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038930 MtrunA17_Chr7g0273171 91.667 168 10 2 1 168 1 164 1.80e-104 296
Msa1038930 MtrunA17_Chr2g0288981 39.645 169 89 4 7 165 2 167 2.15e-31 111
Msa1038930 MtrunA17_Chr4g0025231 35.429 175 88 3 13 166 7 177 2.37e-29 106
Msa1038930 MtrunA17_Chr2g0304821 36.810 163 90 2 17 166 14 176 2.70e-26 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038930 AT1G05070.1 38.922 167 83 5 15 166 6 168 1.53e-31 112
Msa1038930 AT2G32580.1 37.423 163 90 3 15 166 6 167 3.64e-30 108
Msa1038930 AT2G24290.1 40.994 161 80 3 21 166 12 172 2.17e-29 106
Msa1038930 AT4G04360.1 42.236 161 79 4 18 166 10 168 2.84e-28 103
Msa1038930 AT4G30996.1 38.365 159 84 2 21 165 12 170 3.49e-28 103
Msa1038930 AT2G32580.2 43.000 100 57 0 67 166 6 105 3.53e-23 89.0

Find 54 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAAACTAAATTAGTATTT+TGG 0.141693 7_1:+75954154 Msa1038930:three_prime_UTR
GGAATATCCCCTTGCTTCTT+TGG 0.181884 7_1:+75953038 Msa1038930:CDS
GAAGAACGAGCTCGTGATTA+TGG 0.234749 7_1:+75953991 Msa1038930:CDS
TTCATTTCCTCCTTCATTGT+TGG 0.237361 7_1:-75953745 None:intergenic
AGCGCAGGTTGACGGCATTA+TGG 0.273292 7_1:+75953968 Msa1038930:CDS
GTTCAATTGAGTGACAAATT+TGG 0.277581 7_1:+75952815 Msa1038930:five_prime_UTR
GAGCAAAGACAATGTTCTTA+TGG 0.346328 7_1:+75952880 Msa1038930:CDS
TTTGAGGATTTGGGTCTTGT+TGG 0.351369 7_1:-75952773 None:intergenic
CTGTTCCTCACTTGCCTCAC+TGG 0.367272 7_1:+75953017 Msa1038930:CDS
TGTTACCTTGTGTTCACAAT+TGG 0.371180 7_1:+75952937 Msa1038930:CDS
GAATATCCCCTTGCTTCTTT+GGG 0.371490 7_1:+75953039 Msa1038930:CDS
AAATTTGGTTTGGTTTGGTT+TGG 0.388892 7_1:+75952830 Msa1038930:five_prime_UTR
GCGCAGGTTGACGGCATTAT+GGG 0.391190 7_1:+75953969 Msa1038930:CDS
GTGACAAATTTGGTTTGGTT+TGG 0.404272 7_1:+75952825 Msa1038930:five_prime_UTR
ATTGAGTGACAAATTTGGTT+TGG 0.407348 7_1:+75952820 Msa1038930:five_prime_UTR
TTACTATATGTACAGATTGT+GGG 0.418392 7_1:+75953713 Msa1038930:intron
AGTAGTGATAGTTTATTAGT+TGG 0.424734 7_1:-75954056 None:intergenic
GAAGTAGAAAAGTGCAGCAT+AGG 0.426789 7_1:+75953892 Msa1038930:CDS
CAGAGCTTGTTGAAGAGCGC+AGG 0.429709 7_1:+75953953 Msa1038930:CDS
TTTGGTTTGGTTTGCAATGA+GGG 0.434025 7_1:+75952843 Msa1038930:exon
AAGAACGAGCTCGTGATTAT+GGG 0.441049 7_1:+75953992 Msa1038930:CDS
GGTCTGTTCCAAAGTCTCAT+TGG 0.443502 7_1:-75953821 None:intergenic
TTTAAGACCCTGCCGTTAAG+TGG 0.447186 7_1:-75954183 None:intergenic
AATTGTAGCCAATGAGACTT+TGG 0.447499 7_1:+75953813 Msa1038930:CDS
GTGATTATGGGTGGAAGGAC+AGG 0.457853 7_1:+75954004 Msa1038930:CDS
TGTTGAAGAGCGCAGGTTGA+CGG 0.500440 7_1:+75953960 Msa1038930:CDS
GGTGAATTCCACTTAACGGC+AGG 0.511432 7_1:+75954175 Msa1038930:three_prime_UTR
AAGTAGAAAAGTGCAGCATA+GGG 0.518644 7_1:+75953893 Msa1038930:CDS
GTTTGGTTTGGTTTGCAATG+AGG 0.525335 7_1:+75952842 Msa1038930:exon
TTCTTCAAACGCCAGCGAGA+TGG 0.541960 7_1:-75952964 None:intergenic
AGAAAAGTGCAGCATAGGGA+TGG 0.556983 7_1:+75953897 Msa1038930:CDS
CAATCATGACATTGAGGACA+AGG 0.561176 7_1:-75952991 None:intergenic
CAATTGGACCACCATCTCGC+TGG 0.563845 7_1:+75952953 Msa1038930:CDS
TGGAAACTTGTGAAGAAGCA+AGG 0.573605 7_1:+75953917 Msa1038930:CDS
TTCAAACGCCAGCGAGATGG+TGG 0.580007 7_1:-75952961 None:intergenic
TAATTGTGATTATTTAACCA+TGG 0.581787 7_1:+75954121 Msa1038930:three_prime_UTR
AGAAGCAAGGGAGAGAGCAG+AGG 0.585238 7_1:+75953930 Msa1038930:CDS
AAACTTACCCAAAGAAGCAA+GGG 0.586401 7_1:-75953046 None:intergenic
GAGACATGATCCAACAATGA+AGG 0.590741 7_1:+75953735 Msa1038930:CDS
GAAACTTACCCAAAGAAGCA+AGG 0.595699 7_1:-75953047 None:intergenic
AGCTCGTGATTATGGGTGGA+AGG 0.596678 7_1:+75953999 Msa1038930:CDS
TCCTCTGATAGCATTGTCAG+TGG 0.601328 7_1:-75953775 None:intergenic
AACGAGCTCGTGATTATGGG+TGG 0.612321 7_1:+75953995 Msa1038930:CDS
GTGAATTCCACTTAACGGCA+GGG 0.613965 7_1:+75954176 Msa1038930:three_prime_UTR
GGAAACTTGTGAAGAAGCAA+GGG 0.615984 7_1:+75953918 Msa1038930:CDS
TTGTGATTATTTAACCATGG+AGG 0.625180 7_1:+75954124 Msa1038930:three_prime_UTR
ATATTCCAGTGAGGCAAGTG+AGG 0.630993 7_1:-75953022 None:intergenic
CAGTAACAATCATGACATTG+AGG 0.634830 7_1:-75952997 None:intergenic
TCCACTGACAATGCTATCAG+AGG 0.642154 7_1:+75953774 Msa1038930:CDS
ACATGATCCAACAATGAAGG+AGG 0.647322 7_1:+75953738 Msa1038930:CDS
GTGGTCCAATTGTGAACACA+AGG 0.658093 7_1:-75952942 None:intergenic
AATGAAGGAGGAAATGAACA+AGG 0.667487 7_1:+75953750 Msa1038930:CDS
AACTTACCCAAAGAAGCAAG+GGG 0.668009 7_1:-75953045 None:intergenic
AGCAAGGGGATATTCCAGTG+AGG 0.757977 7_1:-75953031 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATAAATTTTACTTAAAG+TGG - chr7_1:75953572-75953591 None:intergenic 10.0%
!!! AAAATACTAATTTAGTTTTA+AGG - chr7_1:75954155-75954174 None:intergenic 10.0%
!!! TTAAAACTAAATTAGTATTT+TGG + chr7_1:75954154-75954173 Msa1038930:three_prime_UTR 10.0%
!!! ATTATAAATTTTACTTAAAG+TGG - chr7_1:75953572-75953591 None:intergenic 10.0%
!!! AAAATACTAATTTAGTTTTA+AGG - chr7_1:75954155-75954174 None:intergenic 10.0%
!!! TTAAAACTAAATTAGTATTT+TGG + chr7_1:75954154-75954173 Msa1038930:three_prime_UTR 10.0%
!! TTATTCAATTCATATGTATT+AGG + chr7_1:75953260-75953279 Msa1038930:intron 15.0%
!! TTATTCAATTCATATGTATT+AGG + chr7_1:75953260-75953279 Msa1038930:intron 15.0%
!! TAGTAATTAGAAAAATTCAC+TGG + chr7_1:75953182-75953201 Msa1038930:intron 20.0%
!! TAGGTTTATATATTAATTCG+TGG + chr7_1:75953279-75953298 Msa1038930:intron 20.0%
!! AGAAATGCAAAACATTTAAA+TGG - chr7_1:75953487-75953506 None:intergenic 20.0%
!!! TGCATTTTTTACTAATCTTT+TGG - chr7_1:75953845-75953864 None:intergenic 20.0%
!! AAAGATTAGTAAAAAATGCA+AGG + chr7_1:75953845-75953864 Msa1038930:CDS 20.0%
!! TAATTGTGATTATTTAACCA+TGG + chr7_1:75954121-75954140 Msa1038930:three_prime_UTR 20.0%
!! TAGTAATTAGAAAAATTCAC+TGG + chr7_1:75953182-75953201 Msa1038930:intron 20.0%
!! TAGGTTTATATATTAATTCG+TGG + chr7_1:75953279-75953298 Msa1038930:intron 20.0%
!! AGAAATGCAAAACATTTAAA+TGG - chr7_1:75953487-75953506 None:intergenic 20.0%
!!! TGCATTTTTTACTAATCTTT+TGG - chr7_1:75953845-75953864 None:intergenic 20.0%
!! AAAGATTAGTAAAAAATGCA+AGG + chr7_1:75953845-75953864 Msa1038930:CDS 20.0%
!! TAATTGTGATTATTTAACCA+TGG + chr7_1:75954121-75954140 Msa1038930:three_prime_UTR 20.0%
!!! TTTGTTTTGTTTGAGGATTT+GGG - chr7_1:75952785-75952804 None:intergenic 25.0%
!!! TTTTGTTTTGTTTGAGGATT+TGG - chr7_1:75952786-75952805 None:intergenic 25.0%
!!! GTTTTGTTTTGTTTTGTTTG+AGG - chr7_1:75952792-75952811 None:intergenic 25.0%
! ATTTGTAGAGTAAGTGAAAA+GGG - chr7_1:75953072-75953091 None:intergenic 25.0%
! AATTTGTAGAGTAAGTGAAA+AGG - chr7_1:75953073-75953092 None:intergenic 25.0%
!!! CATCATTTTTCAAACACAAA+GGG - chr7_1:75953159-75953178 None:intergenic 25.0%
! ATTGAATAACCAAAACATTC+TGG - chr7_1:75953249-75953268 None:intergenic 25.0%
!! TCAACATAACTTTGTTTATG+TGG + chr7_1:75953508-75953527 Msa1038930:intron 25.0%
! TTTACTATATGTACAGATTG+TGG + chr7_1:75953712-75953731 Msa1038930:intron 25.0%
! TTACTATATGTACAGATTGT+GGG + chr7_1:75953713-75953732 Msa1038930:intron 25.0%
! AGTAGTGATAGTTTATTAGT+TGG - chr7_1:75954059-75954078 None:intergenic 25.0%
!!! TTTGTTTTGTTTGAGGATTT+GGG - chr7_1:75952785-75952804 None:intergenic 25.0%
!!! TTTTGTTTTGTTTGAGGATT+TGG - chr7_1:75952786-75952805 None:intergenic 25.0%
!!! GTTTTGTTTTGTTTTGTTTG+AGG - chr7_1:75952792-75952811 None:intergenic 25.0%
! ATTTGTAGAGTAAGTGAAAA+GGG - chr7_1:75953072-75953091 None:intergenic 25.0%
! AATTTGTAGAGTAAGTGAAA+AGG - chr7_1:75953073-75953092 None:intergenic 25.0%
!!! CATCATTTTTCAAACACAAA+GGG - chr7_1:75953159-75953178 None:intergenic 25.0%
! ATTGAATAACCAAAACATTC+TGG - chr7_1:75953249-75953268 None:intergenic 25.0%
!! TCAACATAACTTTGTTTATG+TGG + chr7_1:75953508-75953527 Msa1038930:intron 25.0%
! TTTACTATATGTACAGATTG+TGG + chr7_1:75953712-75953731 Msa1038930:intron 25.0%
! TTACTATATGTACAGATTGT+GGG + chr7_1:75953713-75953732 Msa1038930:intron 25.0%
! AGTAGTGATAGTTTATTAGT+TGG - chr7_1:75954059-75954078 None:intergenic 25.0%
GTTCAATTGAGTGACAAATT+TGG + chr7_1:75952815-75952834 Msa1038930:five_prime_UTR 30.0%
ATTGAGTGACAAATTTGGTT+TGG + chr7_1:75952820-75952839 Msa1038930:five_prime_UTR 30.0%
!! AAATTTGGTTTGGTTTGGTT+TGG + chr7_1:75952830-75952849 Msa1038930:five_prime_UTR 30.0%
!!! TTCTTATGGTGTTTTGAAGT+GGG + chr7_1:75952894-75952913 Msa1038930:CDS 30.0%
ACTCTACAAATTAACAGACT+TGG + chr7_1:75953081-75953100 Msa1038930:intron 30.0%
ACAAGTTTGATTAGATGTAC+AGG + chr7_1:75953120-75953139 Msa1038930:intron 30.0%
!! GCATCATTTTTCAAACACAA+AGG - chr7_1:75953160-75953179 None:intergenic 30.0%
CTTTGTTCTGATTCTCAAAA+AGG - chr7_1:75953211-75953230 None:intergenic 30.0%
! TTAGTCTATCCAGAATGTTT+TGG + chr7_1:75953237-75953256 Msa1038930:intron 30.0%
! ATGTATGTTTTGTATCACAG+TGG - chr7_1:75953369-75953388 None:intergenic 30.0%
TGATACAAAACATACATCGA+AGG + chr7_1:75953372-75953391 Msa1038930:intron 30.0%
CTAAAAATGAGAACAGAATG+AGG - chr7_1:75953632-75953651 None:intergenic 30.0%
ATAATGTCCAAAAGACAACA+TGG - chr7_1:75953674-75953693 None:intergenic 30.0%
TTGTGATTATTTAACCATGG+AGG + chr7_1:75954124-75954143 Msa1038930:three_prime_UTR 30.0%
! TTTTGGTGAATTCCACTTAA+CGG + chr7_1:75954171-75954190 Msa1038930:three_prime_UTR 30.0%
GTTCAATTGAGTGACAAATT+TGG + chr7_1:75952815-75952834 Msa1038930:five_prime_UTR 30.0%
ATTGAGTGACAAATTTGGTT+TGG + chr7_1:75952820-75952839 Msa1038930:five_prime_UTR 30.0%
!! AAATTTGGTTTGGTTTGGTT+TGG + chr7_1:75952830-75952849 Msa1038930:five_prime_UTR 30.0%
!!! TTCTTATGGTGTTTTGAAGT+GGG + chr7_1:75952894-75952913 Msa1038930:CDS 30.0%
ACTCTACAAATTAACAGACT+TGG + chr7_1:75953081-75953100 Msa1038930:intron 30.0%
ACAAGTTTGATTAGATGTAC+AGG + chr7_1:75953120-75953139 Msa1038930:intron 30.0%
!! GCATCATTTTTCAAACACAA+AGG - chr7_1:75953160-75953179 None:intergenic 30.0%
CTTTGTTCTGATTCTCAAAA+AGG - chr7_1:75953211-75953230 None:intergenic 30.0%
! TTAGTCTATCCAGAATGTTT+TGG + chr7_1:75953237-75953256 Msa1038930:intron 30.0%
! ATGTATGTTTTGTATCACAG+TGG - chr7_1:75953369-75953388 None:intergenic 30.0%
TGATACAAAACATACATCGA+AGG + chr7_1:75953372-75953391 Msa1038930:intron 30.0%
CTAAAAATGAGAACAGAATG+AGG - chr7_1:75953632-75953651 None:intergenic 30.0%
ATAATGTCCAAAAGACAACA+TGG - chr7_1:75953674-75953693 None:intergenic 30.0%
TTGTGATTATTTAACCATGG+AGG + chr7_1:75954124-75954143 Msa1038930:three_prime_UTR 30.0%
! TTTTGGTGAATTCCACTTAA+CGG + chr7_1:75954171-75954190 Msa1038930:three_prime_UTR 30.0%
!! GTGACAAATTTGGTTTGGTT+TGG + chr7_1:75952825-75952844 Msa1038930:five_prime_UTR 35.0%
!! TTTGGTTTGGTTTGCAATGA+GGG + chr7_1:75952843-75952862 Msa1038930:exon 35.0%
GAGCAAAGACAATGTTCTTA+TGG + chr7_1:75952880-75952899 Msa1038930:CDS 35.0%
!!! GTTCTTATGGTGTTTTGAAG+TGG + chr7_1:75952893-75952912 Msa1038930:CDS 35.0%
!!! TTTTGAAGTGGGTTTTGGTT+TGG + chr7_1:75952905-75952924 Msa1038930:CDS 35.0%
TGTTACCTTGTGTTCACAAT+TGG + chr7_1:75952937-75952956 Msa1038930:CDS 35.0%
CAGTAACAATCATGACATTG+AGG - chr7_1:75953000-75953019 None:intergenic 35.0%
AAACTTACCCAAAGAAGCAA+GGG - chr7_1:75953049-75953068 None:intergenic 35.0%
GTTGAGCTAAACAACTTACA+AGG - chr7_1:75953404-75953423 None:intergenic 35.0%
! GTAAGTTGTTTAGCTCAACA+CGG + chr7_1:75953405-75953424 Msa1038930:intron 35.0%
TTCATTTCCTCCTTCATTGT+TGG - chr7_1:75953748-75953767 None:intergenic 35.0%
AATGAAGGAGGAAATGAACA+AGG + chr7_1:75953750-75953769 Msa1038930:CDS 35.0%
AATTGTAGCCAATGAGACTT+TGG + chr7_1:75953813-75953832 Msa1038930:CDS 35.0%
! AAGTAGAAAAGTGCAGCATA+GGG + chr7_1:75953893-75953912 Msa1038930:CDS 35.0%
!! GTGACAAATTTGGTTTGGTT+TGG + chr7_1:75952825-75952844 Msa1038930:five_prime_UTR 35.0%
!! TTTGGTTTGGTTTGCAATGA+GGG + chr7_1:75952843-75952862 Msa1038930:exon 35.0%
GAGCAAAGACAATGTTCTTA+TGG + chr7_1:75952880-75952899 Msa1038930:CDS 35.0%
!!! GTTCTTATGGTGTTTTGAAG+TGG + chr7_1:75952893-75952912 Msa1038930:CDS 35.0%
!!! TTTTGAAGTGGGTTTTGGTT+TGG + chr7_1:75952905-75952924 Msa1038930:CDS 35.0%
TGTTACCTTGTGTTCACAAT+TGG + chr7_1:75952937-75952956 Msa1038930:CDS 35.0%
CAGTAACAATCATGACATTG+AGG - chr7_1:75953000-75953019 None:intergenic 35.0%
AAACTTACCCAAAGAAGCAA+GGG - chr7_1:75953049-75953068 None:intergenic 35.0%
GTTGAGCTAAACAACTTACA+AGG - chr7_1:75953404-75953423 None:intergenic 35.0%
! GTAAGTTGTTTAGCTCAACA+CGG + chr7_1:75953405-75953424 Msa1038930:intron 35.0%
TTCATTTCCTCCTTCATTGT+TGG - chr7_1:75953748-75953767 None:intergenic 35.0%
AATGAAGGAGGAAATGAACA+AGG + chr7_1:75953750-75953769 Msa1038930:CDS 35.0%
AATTGTAGCCAATGAGACTT+TGG + chr7_1:75953813-75953832 Msa1038930:CDS 35.0%
! AAGTAGAAAAGTGCAGCATA+GGG + chr7_1:75953893-75953912 Msa1038930:CDS 35.0%
!! GTTTGGTTTGGTTTGCAATG+AGG + chr7_1:75952842-75952861 Msa1038930:exon 40.0%
!!! TGGTGTTTTGAAGTGGGTTT+TGG + chr7_1:75952900-75952919 Msa1038930:CDS 40.0%
CAATCATGACATTGAGGACA+AGG - chr7_1:75952994-75953013 None:intergenic 40.0%
GAATATCCCCTTGCTTCTTT+GGG + chr7_1:75953039-75953058 Msa1038930:CDS 40.0%
AACTTACCCAAAGAAGCAAG+GGG - chr7_1:75953048-75953067 None:intergenic 40.0%
GAAACTTACCCAAAGAAGCA+AGG - chr7_1:75953050-75953069 None:intergenic 40.0%
! TTGTTTAGCTCAACACGGTA+CGG + chr7_1:75953410-75953429 Msa1038930:intron 40.0%
! TTCACCACCATGTTGTCTTT+TGG + chr7_1:75953664-75953683 Msa1038930:intron 40.0%
ATGTCCAAAAGACAACATGG+TGG - chr7_1:75953671-75953690 None:intergenic 40.0%
GAGACATGATCCAACAATGA+AGG + chr7_1:75953735-75953754 Msa1038930:CDS 40.0%
ACATGATCCAACAATGAAGG+AGG + chr7_1:75953738-75953757 Msa1038930:CDS 40.0%
! GAAGTAGAAAAGTGCAGCAT+AGG + chr7_1:75953892-75953911 Msa1038930:CDS 40.0%
TGGAAACTTGTGAAGAAGCA+AGG + chr7_1:75953917-75953936 Msa1038930:CDS 40.0%
GGAAACTTGTGAAGAAGCAA+GGG + chr7_1:75953918-75953937 Msa1038930:CDS 40.0%
AAGAACGAGCTCGTGATTAT+GGG + chr7_1:75953992-75954011 Msa1038930:CDS 40.0%
!! GTTTGGTTTGGTTTGCAATG+AGG + chr7_1:75952842-75952861 Msa1038930:exon 40.0%
!!! TGGTGTTTTGAAGTGGGTTT+TGG + chr7_1:75952900-75952919 Msa1038930:CDS 40.0%
CAATCATGACATTGAGGACA+AGG - chr7_1:75952994-75953013 None:intergenic 40.0%
GAATATCCCCTTGCTTCTTT+GGG + chr7_1:75953039-75953058 Msa1038930:CDS 40.0%
AACTTACCCAAAGAAGCAAG+GGG - chr7_1:75953048-75953067 None:intergenic 40.0%
GAAACTTACCCAAAGAAGCA+AGG - chr7_1:75953050-75953069 None:intergenic 40.0%
! TTGTTTAGCTCAACACGGTA+CGG + chr7_1:75953410-75953429 Msa1038930:intron 40.0%
! TTCACCACCATGTTGTCTTT+TGG + chr7_1:75953664-75953683 Msa1038930:intron 40.0%
ATGTCCAAAAGACAACATGG+TGG - chr7_1:75953671-75953690 None:intergenic 40.0%
GAGACATGATCCAACAATGA+AGG + chr7_1:75953735-75953754 Msa1038930:CDS 40.0%
ACATGATCCAACAATGAAGG+AGG + chr7_1:75953738-75953757 Msa1038930:CDS 40.0%
! GAAGTAGAAAAGTGCAGCAT+AGG + chr7_1:75953892-75953911 Msa1038930:CDS 40.0%
TGGAAACTTGTGAAGAAGCA+AGG + chr7_1:75953917-75953936 Msa1038930:CDS 40.0%
GGAAACTTGTGAAGAAGCAA+GGG + chr7_1:75953918-75953937 Msa1038930:CDS 40.0%
AAGAACGAGCTCGTGATTAT+GGG + chr7_1:75953992-75954011 Msa1038930:CDS 40.0%
GTGGTCCAATTGTGAACACA+AGG - chr7_1:75952945-75952964 None:intergenic 45.0%
ATATTCCAGTGAGGCAAGTG+AGG - chr7_1:75953025-75953044 None:intergenic 45.0%
GGAATATCCCCTTGCTTCTT+TGG + chr7_1:75953038-75953057 Msa1038930:CDS 45.0%
! TGTTTAGCTCAACACGGTAC+GGG + chr7_1:75953411-75953430 Msa1038930:intron 45.0%
TCCACTGACAATGCTATCAG+AGG + chr7_1:75953774-75953793 Msa1038930:CDS 45.0%
TCCTCTGATAGCATTGTCAG+TGG - chr7_1:75953778-75953797 None:intergenic 45.0%
GGTCTGTTCCAAAGTCTCAT+TGG - chr7_1:75953824-75953843 None:intergenic 45.0%
! AGAAAAGTGCAGCATAGGGA+TGG + chr7_1:75953897-75953916 Msa1038930:CDS 45.0%
GAAGAACGAGCTCGTGATTA+TGG + chr7_1:75953991-75954010 Msa1038930:CDS 45.0%
!!! GTTTTAAGGCATAGCCTCCA+TGG - chr7_1:75954141-75954160 None:intergenic 45.0%
GTGAATTCCACTTAACGGCA+GGG + chr7_1:75954176-75954195 Msa1038930:three_prime_UTR 45.0%
GTGGTCCAATTGTGAACACA+AGG - chr7_1:75952945-75952964 None:intergenic 45.0%
ATATTCCAGTGAGGCAAGTG+AGG - chr7_1:75953025-75953044 None:intergenic 45.0%
GGAATATCCCCTTGCTTCTT+TGG + chr7_1:75953038-75953057 Msa1038930:CDS 45.0%
! TGTTTAGCTCAACACGGTAC+GGG + chr7_1:75953411-75953430 Msa1038930:intron 45.0%
TCCACTGACAATGCTATCAG+AGG + chr7_1:75953774-75953793 Msa1038930:CDS 45.0%
TCCTCTGATAGCATTGTCAG+TGG - chr7_1:75953778-75953797 None:intergenic 45.0%
GGTCTGTTCCAAAGTCTCAT+TGG - chr7_1:75953824-75953843 None:intergenic 45.0%
! AGAAAAGTGCAGCATAGGGA+TGG + chr7_1:75953897-75953916 Msa1038930:CDS 45.0%
GAAGAACGAGCTCGTGATTA+TGG + chr7_1:75953991-75954010 Msa1038930:CDS 45.0%
!!! GTTTTAAGGCATAGCCTCCA+TGG - chr7_1:75954141-75954160 None:intergenic 45.0%
GTGAATTCCACTTAACGGCA+GGG + chr7_1:75954176-75954195 Msa1038930:three_prime_UTR 45.0%
TTCTTCAAACGCCAGCGAGA+TGG - chr7_1:75952967-75952986 None:intergenic 50.0%
AGCAAGGGGATATTCCAGTG+AGG - chr7_1:75953034-75953053 None:intergenic 50.0%
! GTTTAGCTCAACACGGTACG+GGG + chr7_1:75953412-75953431 Msa1038930:intron 50.0%
! TGTTGAAGAGCGCAGGTTGA+CGG + chr7_1:75953960-75953979 Msa1038930:CDS 50.0%
AACGAGCTCGTGATTATGGG+TGG + chr7_1:75953995-75954014 Msa1038930:CDS 50.0%
AGCTCGTGATTATGGGTGGA+AGG + chr7_1:75953999-75954018 Msa1038930:CDS 50.0%
GTGATTATGGGTGGAAGGAC+AGG + chr7_1:75954004-75954023 Msa1038930:CDS 50.0%
GGTGAATTCCACTTAACGGC+AGG + chr7_1:75954175-75954194 Msa1038930:three_prime_UTR 50.0%
TTCTTCAAACGCCAGCGAGA+TGG - chr7_1:75952967-75952986 None:intergenic 50.0%
AGCAAGGGGATATTCCAGTG+AGG - chr7_1:75953034-75953053 None:intergenic 50.0%
! GTTTAGCTCAACACGGTACG+GGG + chr7_1:75953412-75953431 Msa1038930:intron 50.0%
! TGTTGAAGAGCGCAGGTTGA+CGG + chr7_1:75953960-75953979 Msa1038930:CDS 50.0%
AACGAGCTCGTGATTATGGG+TGG + chr7_1:75953995-75954014 Msa1038930:CDS 50.0%
AGCTCGTGATTATGGGTGGA+AGG + chr7_1:75953999-75954018 Msa1038930:CDS 50.0%
GTGATTATGGGTGGAAGGAC+AGG + chr7_1:75954004-75954023 Msa1038930:CDS 50.0%
GGTGAATTCCACTTAACGGC+AGG + chr7_1:75954175-75954194 Msa1038930:three_prime_UTR 50.0%
CAATTGGACCACCATCTCGC+TGG + chr7_1:75952953-75952972 Msa1038930:CDS 55.0%
TTCAAACGCCAGCGAGATGG+TGG - chr7_1:75952964-75952983 None:intergenic 55.0%
CTGTTCCTCACTTGCCTCAC+TGG + chr7_1:75953017-75953036 Msa1038930:CDS 55.0%
AGAAGCAAGGGAGAGAGCAG+AGG + chr7_1:75953930-75953949 Msa1038930:CDS 55.0%
!! CAGAGCTTGTTGAAGAGCGC+AGG + chr7_1:75953953-75953972 Msa1038930:CDS 55.0%
! AGCGCAGGTTGACGGCATTA+TGG + chr7_1:75953968-75953987 Msa1038930:CDS 55.0%
! GCGCAGGTTGACGGCATTAT+GGG + chr7_1:75953969-75953988 Msa1038930:CDS 55.0%
CAATTGGACCACCATCTCGC+TGG + chr7_1:75952953-75952972 Msa1038930:CDS 55.0%
TTCAAACGCCAGCGAGATGG+TGG - chr7_1:75952964-75952983 None:intergenic 55.0%
CTGTTCCTCACTTGCCTCAC+TGG + chr7_1:75953017-75953036 Msa1038930:CDS 55.0%
AGAAGCAAGGGAGAGAGCAG+AGG + chr7_1:75953930-75953949 Msa1038930:CDS 55.0%
!! CAGAGCTTGTTGAAGAGCGC+AGG + chr7_1:75953953-75953972 Msa1038930:CDS 55.0%
! AGCGCAGGTTGACGGCATTA+TGG + chr7_1:75953968-75953987 Msa1038930:CDS 55.0%
! GCGCAGGTTGACGGCATTAT+GGG + chr7_1:75953969-75953988 Msa1038930:CDS 55.0%
GCTCAACACGGTACGGGGAT+TGG + chr7_1:75953417-75953436 Msa1038930:intron 60.0%
GCTCAACACGGTACGGGGAT+TGG + chr7_1:75953417-75953436 Msa1038930:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 75952775 75954204 75952775 ID=Msa1038930;Name=Msa1038930
chr7_1 mRNA 75952775 75954204 75952775 ID=Msa1038930-mRNA-1;Parent=Msa1038930;Name=Msa1038930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=84|1|1|1|1|1|2|172|168
chr7_1 exon 75952775 75953060 75952775 ID=Msa1038930-mRNA-1:exon:19554;Parent=Msa1038930-mRNA-1
chr7_1 exon 75953728 75954204 75953728 ID=Msa1038930-mRNA-1:exon:19555;Parent=Msa1038930-mRNA-1
chr7_1 five_prime_UTR 75952775 75952858 75952775 ID=Msa1038930-mRNA-1:five_prime_utr;Parent=Msa1038930-mRNA-1
chr7_1 CDS 75952859 75953060 75952859 ID=Msa1038930-mRNA-1:cds;Parent=Msa1038930-mRNA-1
chr7_1 CDS 75953728 75954032 75953728 ID=Msa1038930-mRNA-1:cds;Parent=Msa1038930-mRNA-1
chr7_1 three_prime_UTR 75954033 75954204 75954033 ID=Msa1038930-mRNA-1:three_prime_utr;Parent=Msa1038930-mRNA-1
Gene Sequence

>Msa1038930

ATGAGGGTTCATCATCAAAATGAGCAAAGACAATGTTCTTATGGTGTTTTGAAGTGGGTTTTGGTTTGGATGAGTGTGTGTTACCTTGTGTTCACAATTGGACCACCATCTCGCTGGCGTTTGAAGAAATCTCCTTGTCCTCAATGTCATGATTGTTACTGTTCCTCACTTGCCTCACTGGAATATCCCCTTGCTTCTTTGGATTGTGGGAGACATGATCCAACAATGAAGGAGGAAATGAACAAGGATCCACTGACAATGCTATCAGAGGAGTTAAAGTTGCAGAAAATTGTAGCCAATGAGACTTTGGAACAGACCAAAAGATTAGTAAAAAATGCAAGGAATACTTTCTCTCATTATAAAAAAGAAGTAGAAAAGTGCAGCATAGGGATGGAAACTTGTGAAGAAGCAAGGGAGAGAGCAGAGGCAGAGCTTGTTGAAGAGCGCAGGTTGACGGCATTATGGGAAGAACGAGCTCGTGATTATGGGTGGAAGGACAGGAGATGA
Protein sequence

>Msa1038930

MRVHHQNEQRQCSYGVLKWVLVWMSVCYLVFTIGPPSRWRLKKSPCPQCHDCYCSSLASLEYPLASLDCGRHDPTMKEEMNKDPLTMLSEELKLQKIVANETLEQTKRLVKNARNTFSHYKKEVEKCSIGMETCEEARERAEAELVEERRLTALWEERARDYGWKDRR*