AlfalfaGEDB | Msa1038930

M. sativa cultivar zhongmu-4 / Msa1038930

KEGG: -
GO: -
PFAM: PF06364.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038930	XP_003626325.2	91.667	168	10	2	1	168	1	164	1.95e-100	296

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038930	G7KZQ0	91.667	168	10	2	1	168	1	164	9.33e-101	296

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa1038930	0.817727	2.838288e-52	-8.615850e-47
Msa0094120	Msa1038930	0.800655	1.301676e-48	-8.615850e-47
Msa0110970	Msa1038930	0.811352	7.309329e-51	-8.615850e-47
Msa0157290	Msa1038930	0.817404	3.356916e-52	-8.615850e-47
Msa0243100	Msa1038930	0.809152	2.178669e-50	-8.615850e-47
Msa0267220	Msa1038930	0.813626	2.326580e-51	-8.615850e-47
Msa0469030	Msa1038930	0.805934	1.050174e-49	-8.615850e-47
Msa0880140	Msa1038930	0.815375	9.546812e-52	-8.615850e-47
Msa1038930	Msa1125000	0.803793	2.942127e-49	-8.615850e-47
Msa1038930	Msa1128710	0.862928	3.580323e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038930	MtrunA17_Chr7g0273171	91.667	168	10	2	1	168	1	164	1.80e-104	296
Msa1038930	MtrunA17_Chr2g0288981	39.645	169	89	4	7	165	2	167	2.15e-31	111
Msa1038930	MtrunA17_Chr4g0025231	35.429	175	88	3	13	166	7	177	2.37e-29	106
Msa1038930	MtrunA17_Chr2g0304821	36.810	163	90	2	17	166	14	176	2.70e-26	98.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1038930	AT1G05070.1	38.922	167	83	5	15	166	6	168	1.53e-31	112
Msa1038930	AT2G32580.1	37.423	163	90	3	15	166	6	167	3.64e-30	108
Msa1038930	AT2G24290.1	40.994	161	80	3	21	166	12	172	2.17e-29	106
Msa1038930	AT4G04360.1	42.236	161	79	4	18	166	10	168	2.84e-28	103
Msa1038930	AT4G30996.1	38.365	159	84	2	21	165	12	170	3.49e-28	103
Msa1038930	AT2G32580.2	43.000	100	57	0	67	166	6	105	3.53e-23	89.0

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Find 54 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTACCCAAAGAAGCAA+GGG	0.586401	7_1:-75953046	None:intergenic
AAATTTGGTTTGGTTTGGTT+TGG	0.388892	7_1:+75952830	Msa1038930:five_prime_UTR
AACGAGCTCGTGATTATGGG+TGG	0.612321	7_1:+75953995	Msa1038930:CDS
AACTTACCCAAAGAAGCAAG+GGG	0.668009	7_1:-75953045	None:intergenic
AAGAACGAGCTCGTGATTAT+GGG	0.441049	7_1:+75953992	Msa1038930:CDS
AAGTAGAAAAGTGCAGCATA+GGG	0.518644	7_1:+75953893	Msa1038930:CDS
AATGAAGGAGGAAATGAACA+AGG	0.667487	7_1:+75953750	Msa1038930:CDS
AATTGTAGCCAATGAGACTT+TGG	0.447499	7_1:+75953813	Msa1038930:CDS
ACATGATCCAACAATGAAGG+AGG	0.647322	7_1:+75953738	Msa1038930:CDS
AGAAAAGTGCAGCATAGGGA+TGG	0.556983	7_1:+75953897	Msa1038930:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTCAATTGAGTGACAAATT+TGG	+	chr7_1:75952815-75952834	Msa1038930:five_prime_UTR	30.0%
ATTGAGTGACAAATTTGGTT+TGG	+	chr7_1:75952820-75952839	Msa1038930:five_prime_UTR	30.0%
ACTCTACAAATTAACAGACT+TGG	+	chr7_1:75953081-75953100	Msa1038930:intron	30.0%
ACAAGTTTGATTAGATGTAC+AGG	+	chr7_1:75953120-75953139	Msa1038930:intron	30.0%
CTTTGTTCTGATTCTCAAAA+AGG	-	chr7_1:75953211-75953230	None:intergenic	30.0%
TGATACAAAACATACATCGA+AGG	+	chr7_1:75953372-75953391	Msa1038930:intron	30.0%
CTAAAAATGAGAACAGAATG+AGG	-	chr7_1:75953632-75953651	None:intergenic	30.0%
ATAATGTCCAAAAGACAACA+TGG	-	chr7_1:75953674-75953693	None:intergenic	30.0%
TTGTGATTATTTAACCATGG+AGG	+	chr7_1:75954124-75954143	Msa1038930:three_prime_UTR	30.0%
GTTCAATTGAGTGACAAATT+TGG	+	chr7_1:75952815-75952834	Msa1038930:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	75952775	75954204	75952775	ID=Msa1038930;Name=Msa1038930
chr7_1	mRNA	75952775	75954204	75952775	ID=Msa1038930-mRNA-1;Parent=Msa1038930;Name=Msa1038930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=84\|1\|1\|1\|1\|1\|2\|172\|168
chr7_1	exon	75952775	75953060	75952775	ID=Msa1038930-mRNA-1:exon:19554;Parent=Msa1038930-mRNA-1
chr7_1	exon	75953728	75954204	75953728	ID=Msa1038930-mRNA-1:exon:19555;Parent=Msa1038930-mRNA-1
chr7_1	five_prime_UTR	75952775	75952858	75952775	ID=Msa1038930-mRNA-1:five_prime_utr;Parent=Msa1038930-mRNA-1
chr7_1	CDS	75952859	75953060	75952859	ID=Msa1038930-mRNA-1:cds;Parent=Msa1038930-mRNA-1
chr7_1	CDS	75953728	75954032	75953728	ID=Msa1038930-mRNA-1:cds;Parent=Msa1038930-mRNA-1
chr7_1	three_prime_UTR	75954033	75954204	75954033	ID=Msa1038930-mRNA-1:three_prime_utr;Parent=Msa1038930-mRNA-1

Gene Sequence

>Msa1038930

ATGAGGGTTCATCATCAAAATGAGCAAAGACAATGTTCTTATGGTGTTTTGAAGTGGGTTTTGGTTTGGATGAGTGTGTGTTACCTTGTGTTCACAATTGGACCACCATCTCGCTGGCGTTTGAAGAAATCTCCTTGTCCTCAATGTCATGATTGTTACTGTTCCTCACTTGCCTCACTGGAATATCCCCTTGCTTCTTTGGATTGTGGGAGACATGATCCAACAATGAAGGAGGAAATGAACAAGGATCCACTGACAATGCTATCAGAGGAGTTAAAGTTGCAGAAAATTGTAGCCAATGAGACTTTGGAACAGACCAAAAGATTAGTAAAAAATGCAAGGAATACTTTCTCTCATTATAAAAAAGAAGTAGAAAAGTGCAGCATAGGGATGGAAACTTGTGAAGAAGCAAGGGAGAGAGCAGAGGCAGAGCTTGTTGAAGAGCGCAGGTTGACGGCATTATGGGAAGAACGAGCTCGTGATTATGGGTGGAAGGACAGGAGATGA

Protein sequence

>Msa1038930

MRVHHQNEQRQCSYGVLKWVLVWMSVCYLVFTIGPPSRWRLKKSPCPQCHDCYCSSLASLEYPLASLDCGRHDPTMKEEMNKDPLTMLSEELKLQKIVANETLEQTKRLVKNARNTFSHYKKEVEKCSIGMETCEEARERAEAELVEERRLTALWEERARDYGWKDRR*